HHsearch alignment for GI: 254781049 and conserved domain: cd06286
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=92.21 E-value=0.94 Score=24.65 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 999999658996248842788898999999999861-9986589996358613289999999999997299987999748
Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 (398)
Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~ 360 (398)
T Consensus 136 f~~al~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~ai~-------~~nd~~A~g~~~al~~~g~~vP~di~vi 208 (260)
T cd06286 136 YKDALEEYGLTPDEEWIFEGCFTIEDGERIGHQLLKMKDRPDAIF-------TGSDEVAAGIITEAKKQGIRVPEDLAII 208 (260)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 999999779997730364465206679999999984499987367-------3689999999999997299999976999
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 98589999999976995899499899999999985
Q gi|254781049|r 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 361 Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 209 gfdd~~---~~~~p~lTt-v~~~~~~~g~~A~~~l 239 (260)
T cd06286 209 GFDNQP---ISELLGITT-IDQPVKELGEKAFELL 239 (260)
T ss_pred EECCHH---HHCCCCCCE-EECCHHHHHHHHHHHH
T ss_conf 989849---982899758-9359999999999999