HHsearch alignment for GI: 254781049 and conserved domain: cd06286

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=92.21  E-value=0.94  Score=24.65  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             999999658996248842788898999999999861-9986589996358613289999999999997299987999748
Q gi|254781049|r  282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE  360 (398)
Q Consensus       282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~  360 (398)
T Consensus       136 f~~al~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~ai~-------~~nd~~A~g~~~al~~~g~~vP~di~vi  208 (260)
T cd06286         136 YKDALEEYGLTPDEEWIFEGCFTIEDGERIGHQLLKMKDRPDAIF-------TGSDEVAAGIITEAKKQGIRVPEDLAII  208 (260)
T ss_pred             HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             999999779997730364465206679999999984499987367-------3689999999999997299999976999


Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             98589999999976995899499899999999985
Q gi|254781049|r  361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       361 Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       209 gfdd~~---~~~~p~lTt-v~~~~~~~g~~A~~~l  239 (260)
T cd06286         209 GFDNQP---ISELLGITT-IDQPVKELGEKAFELL  239 (260)
T ss_pred             EECCHH---HHCCCCCCE-EECCHHHHHHHHHHHH
T ss_conf             989849---982899758-9359999999999999