HHsearch alignment for GI: 254781049 and conserved domain: cd06292
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.75 E-value=0.57 Score=26.09 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999996589962488427888989999999998619986589996358613289999999999997299987999748
Q gi|254781049|r 281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 (398)
Q Consensus 281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~ 360 (398)
T Consensus 143 G~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-~~ai~-------~~nD~~A~g~~~~l~~~g~~ip~di~Vi 214 (273)
T cd06292 143 GFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSG-PTAIV-------AASDLMALGAIRAARRRGLRVPEDVSVV 214 (273)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 999999984999771489716777788999999997479-96577-------4585999999999998399899965999
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 98589999999976995899499899999999985
Q gi|254781049|r 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 361 Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 215 gfD~~~~~~~~-~p~LT-tI~q~~~~~g~~a~~~l 247 (273)
T cd06292 215 GYDDSALMAFT-DPPLT-TVRQPVEEMAAAAVDRL 247 (273)
T ss_pred EECCHHHHHHC-CCCCE-EEECCHHHHHHHHHHHH
T ss_conf 99985899815-89967-99959999999999999