HHsearch alignment for GI: 254781049 and conserved domain: cd06298

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=94.48  E-value=0.41  Score=27.03  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf             99999965899624884278889899999999986199865899963586132899999999999972999879997489
Q gi|254781049|r  282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEG  361 (398)
Q Consensus       282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~G  361 (398)
T Consensus       139 f~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~nD~~A~g~l~~l~~~g~~vP~disvig  211 (268)
T cd06298         139 YKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFV-------TDDELAIGILNAAQDAGLKVPEDFEIIG  211 (268)
T ss_pred             HHHHHHHCCCCCCHHHEECCCHHHHHHHHHHHHHHHCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             999999849997601200354037789999999983699978996-------6879999999999974999998749999


Q ss_pred             CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             8589999999976995899499899999999985
Q gi|254781049|r  362 ANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       362 tn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       212 fDd~~~a~-~~~P~LTt-v~~~~~~~G~~A~~~l  243 (268)
T cd06298         212 FNNTKLAS-MVRPQLTS-VTQPLYDIGAVAMRLL  243 (268)
T ss_pred             ECCHHHHH-CCCCCCEE-EECCHHHHHHHHHHHH
T ss_conf             78818997-14899769-9729999999999999