HHsearch alignment for GI: 254781049 and conserved domain: cd06301
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=90.53 E-value=1.4 Score=23.54 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-C-EEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8889899999999-9861998658999635861328999999999999729998-7-99974898589999999976995
Q gi|254781049|r 301 GGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINI-P-LVMRLEGANVDIGNRLIAESGLN 377 (398)
Q Consensus 301 G~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~-p-ivvRl~Gtn~~~g~~il~~~g~~ 377 (398)
T Consensus 163 ~~~~~~~a~~~~~~~L~~~~~~~aI~~-------~nd~~a~Ga~~al~~~g~~~~~i~v~G~D~~--~~~~~~i~~g~~~ 233 (272)
T cd06301 163 ANWSRAEAMDLMENWLSSGGKIDAVVA-------NNDEMALGAIMALKAAGKSDKDVPVAGIDGT--PDALAAVKKGDLD 233 (272)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCC--HHHHHHHHCCCCE
T ss_conf 312357899999999983677787995-------5827899999999986989998799998985--9999998749976
Q ss_pred EEEECCHHHHHHHHHHHH
Q ss_conf 899499899999999985
Q gi|254781049|r 378 VITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 378 ~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 234 ~tv~q~~~~~G~~av~~~ 251 (272)
T cd06301 234 VTVFQDAKGQGAGALDAA 251 (272)
T ss_pred EEEECCHHHHHHHHHHHH
T ss_conf 998069999999999999