HHsearch alignment for GI: 254781049 and conserved domain: cd06301

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=90.53  E-value=1.4  Score=23.54  Aligned_cols=86  Identities=13%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-C-EEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             8889899999999-9861998658999635861328999999999999729998-7-99974898589999999976995
Q gi|254781049|r  301 GGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINI-P-LVMRLEGANVDIGNRLIAESGLN  377 (398)
Q Consensus       301 G~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~-p-ivvRl~Gtn~~~g~~il~~~g~~  377 (398)
T Consensus       163 ~~~~~~~a~~~~~~~L~~~~~~~aI~~-------~nd~~a~Ga~~al~~~g~~~~~i~v~G~D~~--~~~~~~i~~g~~~  233 (272)
T cd06301         163 ANWSRAEAMDLMENWLSSGGKIDAVVA-------NNDEMALGAIMALKAAGKSDKDVPVAGIDGT--PDALAAVKKGDLD  233 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCC--HHHHHHHHCCCCE
T ss_conf             312357899999999983677787995-------5827899999999986989998799998985--9999998749976


Q ss_pred             EEEECCHHHHHHHHHHHH
Q ss_conf             899499899999999985
Q gi|254781049|r  378 VITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       378 ~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       234 ~tv~q~~~~~G~~av~~~  251 (272)
T cd06301         234 VTVFQDAKGQGAGALDAA  251 (272)
T ss_pred             EEEECCHHHHHHHHHHHH
T ss_conf             998069999999999999