HHsearch alignment for GI: 254781049 and conserved domain: cd06311
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.26 E-value=0.93 Score=24.68 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCC-
Q ss_conf 278889899999999-986199865899963586132899999999999972999-87999748985899999999769-
Q gi|254781049|r 299 VGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESG- 375 (398)
Q Consensus 299 ~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g- 375 (398)
T Consensus 163 ~~~~~~~~~a~~~~~~~L~~~pdi~~If-------a~nD~ma~Ga~~Al~~aG~~~~~~vvG~Dg~~--~~~~~i~~G~~ 233 (274)
T cd06311 163 QYANWNRDDAFSVMQDLLTKFPKIDAVW-------AHDDDMAVGVLAAIKQAGRTDIKFVVGGAGSK--DMIKMIMDGDP 233 (274)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCCCHHHHHHHHHHHCCCCCCCEEEEECCCH--HHHHHHHCCCC
T ss_conf 0387568999999999984388888899-------88980589999999976999997899965998--99999976997
Q ss_pred -CCEEEECC---HHHHHHHHHHHHHC
Q ss_conf -95899499---89999999998506
Q gi|254781049|r 376 -LNVITAID---LDDAAQKIVHAVKG 397 (398)
Q Consensus 376 -~~~~~~~~---~~~A~~~~v~~~k~ 397 (398)
T Consensus 234 ~~~atv~~~p~~~~~Av~~a~~~l~G 259 (274)
T cd06311 234 LIPADVLYPPSMIASAIDLTVALFQG 259 (274)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 48999808999999999999999779