HHsearch alignment for GI: 254781049 and conserved domain: cd06316
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.28 E-value=1.5 Score=23.40 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHH-HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 788898999999-99986199865899963586132899999999999972999-8799974898589999999976995
Q gi|254781049|r 300 GGGADQDKVAAA-FKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESGLN 377 (398)
Q Consensus 300 gG~a~~e~~~~a-~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g~~ 377 (398)
T Consensus 165 ~~~~~~~~a~~~~~~~L~~~Pdi~~I~~-------~nd~~a~Ga~~Al~~aG~~~v~iv-g~d~-g~~~~~~~i~~G~~~ 235 (294)
T cd06316 165 KGIDGPSKAEDIANAMLTQNPDLKGIYA-------VWDVPAEGVIAALRAAGRDDIKVT-TVDL-GLNVALDMAKGGNVA 235 (294)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEE-EEEC-CCHHHHHHHHCCCCE
T ss_conf 3888889999999999973999888998-------686365999999998199983799-9958-968999999779977
Q ss_pred EEEECCHH----HHHHHHHHHHH
Q ss_conf 89949989----99999999850
Q gi|254781049|r 378 VITAIDLD----DAAQKIVHAVK 396 (398)
Q Consensus 378 ~~~~~~~~----~A~~~~v~~~k 396 (398)
T Consensus 236 atv~q~p~~~G~~~v~~a~~~l~ 258 (294)
T cd06316 236 GIGAQRPYDQGVAEARLAALALI 258 (294)
T ss_pred EEEEECHHHHHHHHHHHHHHHHC
T ss_conf 99983889999999999999977