HHsearch alignment for GI: 254781049 and conserved domain: cd06317

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.17  E-value=0.71  Score=25.47  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             CCCCCCHHHHHHHHHHHH-C-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCC
Q ss_conf             278889899999999986-1-99865899963586132899999999999972999-87999748985899999999769
Q gi|254781049|r  299 VGGGADQDKVAAAFKIIT-S-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESG  375 (398)
Q Consensus       299 ~gG~a~~e~~~~a~~~il-~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g  375 (398)
T Consensus       164 ~~~~~~~~~a~~~~~~lL~~~~~~i~~I~-------~~nd~~a~Ga~~Al~~~G~~~~v~vvg~d~~--~~~~~~i~~G~  234 (275)
T cd06317         164 QPADWDREKAQVAMEALITKFGDDIDGVY-------AGDDNMARGALNAAKEAGLAGGIVIVGANNF--AVGYEAIRAGK  234 (275)
T ss_pred             EECCCCHHHHHHHHHHHHHHCCCCCCEEE-------CCCCHHHHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHCCC
T ss_conf             74147789999999999873457533440-------5895789999999997499899879987980--99999998599


Q ss_pred             CCEEEECCHHHHHHHHHHHH
Q ss_conf             95899499899999999985
Q gi|254781049|r  376 LNVITAIDLDDAAQKIVHAV  395 (398)
Q Consensus       376 ~~~~~~~~~~~A~~~~v~~~  395 (398)
T Consensus       235 ~~~tv~q~p~~~G~~av~~~  254 (275)
T cd06317         235 YYGTIYQSPVDDGEAALQTA  254 (275)
T ss_pred             CEEEEECCHHHHHHHHHHHH
T ss_conf             83999259999999999999