HHsearch alignment for GI: 254781049 and conserved domain: cd06317
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.17 E-value=0.71 Score=25.47 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHHHHH-C-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCC
Q ss_conf 278889899999999986-1-99865899963586132899999999999972999-87999748985899999999769
Q gi|254781049|r 299 VGGGADQDKVAAAFKIIT-S-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESG 375 (398)
Q Consensus 299 ~gG~a~~e~~~~a~~~il-~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g 375 (398)
T Consensus 164 ~~~~~~~~~a~~~~~~lL~~~~~~i~~I~-------~~nd~~a~Ga~~Al~~~G~~~~v~vvg~d~~--~~~~~~i~~G~ 234 (275)
T cd06317 164 QPADWDREKAQVAMEALITKFGDDIDGVY-------AGDDNMARGALNAAKEAGLAGGIVIVGANNF--AVGYEAIRAGK 234 (275)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCEEE-------CCCCHHHHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHCCC
T ss_conf 74147789999999999873457533440-------5895789999999997499899879987980--99999998599
Q ss_pred CCEEEECCHHHHHHHHHHHH
Q ss_conf 95899499899999999985
Q gi|254781049|r 376 LNVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 376 ~~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 235 ~~~tv~q~p~~~G~~av~~~ 254 (275)
T cd06317 235 YYGTIYQSPVDDGEAALQTA 254 (275)
T ss_pred CEEEEECCHHHHHHHHHHHH
T ss_conf 83999259999999999999