HHsearch alignment for GI: 254781049 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=98.92 E-value=1.8e-07 Score=68.95 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=94.3
Q ss_pred HHHHCCCCCCCCEEECCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 9998689888815747999----999999872998699971213687656565567777777079958999999999986
Q gi|254781049|r 11 LLRKYNVPVAKGVVISSVH----AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREI 86 (398)
Q Consensus 11 lL~~~GIpvp~g~~a~s~~----ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~i 86 (398)
T Consensus 1 ll~~~Giptp~~~~v~~~~~~~~~~~~i~~~lg~P~-vvKP~--~~gss------------~Gv~~v~~~~el~~~i~~~ 65 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTREDWVLATIEKVEEKLGYPV-FVKPA--NLGSS------------VGISKVTSREELQSAIEEA 65 (201)
T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCE-EEEEC--CCCCC------------CCEEEECCHHHHHHHHHHH
T ss_conf 955659999990898253234357999998659988-99989--99986------------6879995846879999998
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE----ECCCCC-CHHHHHHHCHHHHEEEECCC
Q ss_conf 1876544212222244330110345556505899999834778048998----447884-02455574831220332144
Q gi|254781049|r 87 LGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA----STQGGM-DIEEVAKDYPQKIFKLLIDP 161 (398)
Q Consensus 87 lg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~----S~~GGv-dIE~va~~~p~~I~~~~id~ 161 (398)
T Consensus 66 ~~~~-------------~~vlVEefi~-G~E~~v~vl~~~~---~~~~~~~e~~~~~~~~~~~~k~--~~~~--~----- 119 (201)
T pfam07478 66 FQYD-------------NKVLIEEAIE-GREIECAVLGNED---LEVSPVGEIRLSGGFYDYEAKY--ILSS--A----- 119 (201)
T ss_pred HHCC-------------CCEEEEECCC-CCEEEEEEEECCC---EEEEEEEEEECCCCEEEHHHEE--CCCC--C-----
T ss_conf 7459-------------8079998566-9679999970898---0898758994377502676801--3687--2-----
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 45789578887887519888998859999999989999559751023267990599679940
Q gi|254781049|r 162 LIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLD 223 (398)
Q Consensus 162 ~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlD 223 (398)
T Consensus 120 ----------~~~~Pa~l~~~~~~~i~~~A~~~~~aLg~~g~~rvD~---~~d~~g~~~vlE 168 (201)
T pfam07478 120 ----------QIIVPADLPEEVEEQIQELALKAYKALGCRGLARIDF---FLTEDGEIYLNE 168 (201)
T ss_pred ----------EEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EECCCCCEEEEE
T ss_conf ----------3761566859999999999999999848876057999---996899499999