HHsearch alignment for GI: 254781049 and conserved domain: pfam08443

>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.

Probab=98.84  E-value=5.6e-08  Score=72.21  Aligned_cols=93  Identities=24%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf             999999998689888815747999999999872-9986999712136876565655677777770799589999999999
Q gi|254781049|r    6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTL-PGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR   84 (398)
Q Consensus         6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~i-g~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~   84 (398)
T Consensus         5 ~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~Pv-VvKP~--~g~~g~------------gV~~v~~~~el~~~~~   69 (190)
T pfam08443         5 AKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPV-VVKSV--FGSQGI------------GVFLAEDEQSLEQLLE   69 (190)
T ss_pred             HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCE-EEECC--CCCCCC------------CEEEEECHHHHHHHHH
T ss_conf             99999999879797998998899999999998089838-99678--899984------------5588606377778888


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCEEECCCCCC--CEEEEEEEEEEC
Q ss_conf             861876544212222244330110345556--505899999834
Q gi|254781049|r   85 EILGSTLITKQTGPTGSRVNCVYVEDGADI--LRELYLSLLVDR  126 (398)
Q Consensus        85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~--~~E~ylgi~~Dr  126 (398)
T Consensus        70 ~~~~~~-------------~~vlvqefI~~~~~~dirv~vi~~~  100 (190)
T pfam08443        70 AFKWLK-------------NQILVQEFIAEAGNRDIRCLVVGGE  100 (190)
T ss_pred             HHHHCC-------------CCEEEEEEEECCCCCEEEEEEECCC
T ss_conf             886348-------------7377555660478854899996063