HHsearch results for GI: 254781049 and protein with PDBid: 2i87_A
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A*
Probab=98.80 E-value=5.5e-07 Score=64.28 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHH-------HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHH
Q ss_conf 79999999986898888157479999-------99999872998699971213687656565567777777079958999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHA-------AESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLK 77 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~e-------a~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ 77 (398)
=+.+|++|+++|||+|++.+....+. +..+...++||+ |||+--..|+ =||.++.+.+
T Consensus 130 K~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~l~~~~~~~~~Pv-vvKP~~~g~S--------------~Gv~~v~~~~ 194 (364)
T 2i87_A 130 KLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPV-FVKPANLGSS--------------VGISKCNNEA 194 (364)
T ss_dssp HHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCSSE-EEEESSCSSC--------------TTCEEESSHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCC--------------CCCEEECCHH
T ss_conf 899999999869986986676134222005889999997628986-9984677778--------------7616844789
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEEC
Q ss_conf 9999999861876544212222244330110345556505899999834
Q gi|254781049|r 78 SVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDR 126 (398)
Q Consensus 78 ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr 126 (398)
|+.++.++.+... +.++||+.++ .+|+.+++..+.
T Consensus 195 el~~~i~~~~~~~-------------~~~lvEe~i~-g~E~~~~v~~~~ 229 (364)
T 2i87_A 195 ELKEGIKEAFQFD-------------RKLVIEQGVN-AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHHTTC-------------SEEEEEECCC-CEEEEEEEEESS
T ss_pred HHHHHHHHHHHCC-------------HHHHHHCCCC-CEEEEEEEEECC
T ss_conf 9999999997508-------------4544430427-679999851135