HHsearch results for GI: 254781049 and protein with PDBid: 3e5n_A
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV}
Probab=98.91 E-value=1.9e-07 Score=67.27 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=101.4
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 79999999986898888157479999----99999872998699971213687656565567777777079958999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHA----AESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~e----a~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398)
-+.+|++|+++|||||++......+. ....+..+++|+ |||+- .|| ..-||..+++.++..
T Consensus 160 K~~~K~il~~~gIptp~~~~~~~~~~~~~~~~~~~~~lg~P~-iVKP~--~~G------------sS~Gv~~v~~~~el~ 224 (386)
T 3e5n_A 160 KDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPL-FVKPA--NQG------------SSVGVSQVRTADAFA 224 (386)
T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHCSSE-EEEES--BSC------------SSTTCEEECSGGGHH
T ss_pred CCCCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCE-EECCC--CCC------------CCCCCEEECCHHHHH
T ss_conf 661088997638987531110022203567888888618972-43457--876------------688852650699999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEE-C--CCCCC-HHHHHHHCHHHHEE
Q ss_conf 99998618765442122222443301103455565058999998347780489984-4--78840-24555748312203
Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAS-T--QGGMD-IEEVAKDYPQKIFK 156 (398)
Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S-~--~GGvd-IE~va~~~p~~I~~ 156 (398)
++....+... ..+|||++++ ++|+.+++..++.. +.+... . ..+.. -+. +.... -..
T Consensus 225 ~~~~~a~~~~-------------~~vlvEefI~-GrEitV~v~g~~~~--~~~~~~~~i~~~~~~~~~~--k~~~~-~~~ 285 (386)
T 3e5n_A 225 AALALALAYD-------------HKVLVEAAVA-GREIECAVLGNAVP--HASVCGEVVVHDAFYSYAT--KYISE-HGA 285 (386)
T ss_dssp HHHHHHTTTC-------------SEEEEEECCC-SEEEEEEEECSSSC--EEEEEEEECC--------------------
T ss_pred HHHHHHHCCC-------------HHHCCCCCCC-EEEEEEEECCCCCC--CCCCCCEEECCCCCCCHHH--HHHHC-CCC
T ss_conf 9998621234-------------0001233112-04999975354335--4344443760576531567--64303-773
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEE
Q ss_conf 321444578957888788751988899885999999998999955975102326799059967994001
Q gi|254781049|r 157 LLIDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSK 225 (398)
Q Consensus 157 ~~id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAK 225 (398)
....| ..++.+....+.++..+.|+++--.+..-+|. .++++|+++.++.-
T Consensus 286 ~~~~p---------------a~~~~~~~~~i~~~A~ka~~aLg~~g~~RiDf---~ld~dG~~y~lEvN 336 (386)
T 3e5n_A 286 EIVIP---------------ADIDAQTQQRIQQIAVQAYQALGCAGMARVDV---FLCADGRIVINEVN 336 (386)
T ss_dssp CEESS---------------CSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEE---EECTTCCEEEEEEE
T ss_pred CCCCC---------------CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEEE
T ss_conf 10266---------------43338999999999999999849982699999---99379958999810