HHsearch results for GI: 254781049 and protein with PDBid: 3i12_A
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium}
Probab=98.85 E-value=2.9e-07 Score=66.11 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=101.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 7999999998689888815747999----999999872998699971213687656565567777777079958999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVH----AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~----ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398)
-+..|++|+++|||+|++.+.+..+ ........+++|+ ++|+ ...| ..-||..+++.+++.
T Consensus 141 K~~~k~~l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~~~~P~-ivKP-~~~G-------------sS~Gv~~v~~~~el~ 205 (364)
T 3i12_A 141 KDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPL-FVKP-ANQG-------------SSVGVSKVANEAQYQ 205 (364)
T ss_dssp HHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSE-EEEE-TTCC-------------TTTTCEEESSHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EECC-CCCC-------------CCCCCEEECCHHHHH
T ss_conf 037799999859986326874033113455788777617977-8877-6678-------------888752422177799
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEE--CCCCCCHHHHHHHCHHHHEEEE
Q ss_conf 99998618765442122222443301103455565058999998347780489984--4788402455574831220332
Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAS--TQGGMDIEEVAKDYPQKIFKLL 158 (398)
Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S--~~GGvdIE~va~~~p~~I~~~~ 158 (398)
++....+.. -+.+||||.++ ++|+-+++..+.... .+.... ...+..... .... .......
T Consensus 206 ~~~~~~~~~-------------~~~vlvEefI~-G~E~tV~v~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 268 (364)
T 3i12_A 206 QAVALAFEF-------------DHKVVVEQGIK-GREIECAVLGNDNPQ-ASTCGEIVLNSEFYAYD-TKYI-DDNGAQV 268 (364)
T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSSCE-EEEEEEEECCTTCC--T-TTTS-GGGGCEE
T ss_pred HHHHHHHHH-------------HHHCCHHCEEE-EEEEEEEECCCCCCE-EEEEEEECCCCCCCCCC-HHCC-CCCCCCC
T ss_conf 999998874-------------01001103572-279998514544653-53114532466654400-1103-6665334
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE
Q ss_conf 144457895788878875198889988599999999899995597510232679905996799400
Q gi|254781049|r 159 IDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398)
Q Consensus 159 id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398)
+.| ..++.+..+.+.++..+.|+.+--.+..-++ +.++++|+++.++.
T Consensus 269 ~~p---------------~~l~~e~~~~i~~~A~~a~~~Lg~~g~~RvD---f~~d~~g~~yvlEv 316 (364)
T 3i12_A 269 VVP---------------AQIPSEVNDKIRAIAIQAYQTLGCAGMARVD---VFLTADNEVVINEI 316 (364)
T ss_dssp ESS---------------CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE---EEECTTCCEEEEEE
T ss_pred CCC---------------CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EEEECCCCEEEEEE
T ss_conf 566---------------1004999999999999999971998469888---99918996899986