Query gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 398 No_of_seqs 206 out of 1932 Neff 6.1 Searched_HMMs 23785 Date Wed Jun 1 01:07:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781049.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2fp4_B Succinyl-COA ligase [GD 100.0 0 0 981.3 45.0 394 1-397 1-394 (395) 2 2nu8_B SCS-beta, succinyl-COA 100.0 0 0 966.5 46.6 387 1-397 1-387 (388) 3 3mwd_A ATP-citrate synthase; A 100.0 0 0 728.0 23.8 373 2-397 5-420 (425) 4 1wr2_A Hypothetical protein PH 100.0 1.4E-44 0 311.9 13.4 215 1-231 18-237 (238) 5 1a9x_A Carbamoyl phosphate syn 99.3 4.7E-10 2E-14 84.5 15.7 142 6-180 130-278 (1073) 6 2yw2_A Phosphoribosylamine--gl 99.2 1.8E-10 7.6E-15 87.2 13.0 101 5-128 103-203 (424) 7 2csu_A 457AA long hypothetical 99.1 2.3E-09 9.6E-14 80.0 14.8 128 266-395 293-445 (457) 8 3lp8_A Phosphoribosylamine-gly 99.1 1.5E-09 6.3E-14 81.2 13.8 199 6-253 125-328 (442) 9 1vkz_A Phosphoribosylamine--gl 99.1 5.6E-10 2.4E-14 84.0 11.5 100 6-128 108-207 (412) 10 2ip4_A PURD, phosphoribosylami 99.1 8.5E-10 3.6E-14 82.8 11.9 195 5-253 102-301 (417) 11 2qk4_A Trifunctional purine bi 99.1 1.2E-09 4.9E-14 81.9 12.2 101 7-129 131-231 (452) 12 2yrx_A Phosphoribosylglycinami 99.1 9.8E-10 4.1E-14 82.4 11.3 100 5-127 124-223 (451) 13 3mjf_A Phosphoribosylamine--gl 99.0 4.3E-09 1.8E-13 78.2 11.8 189 7-253 110-313 (431) 14 3ouz_A Biotin carboxylase; str 99.0 4.1E-09 1.7E-13 78.3 11.6 169 6-222 121-291 (446) 15 1ulz_A Pyruvate carboxylase N- 99.0 1.8E-08 7.6E-13 74.1 13.3 107 5-134 115-223 (451) 16 1ehi_A LMDDL2, D-alanine:D-lac 98.9 1.3E-07 5.3E-12 68.5 15.7 182 5-235 136-330 (377) 17 3e5n_A D-alanine-D-alanine lig 98.9 1.9E-07 8.1E-12 67.3 16.6 169 5-225 160-336 (386) 18 2dwc_A PH0318, 433AA long hypo 98.9 1.3E-08 5.4E-13 75.0 10.5 98 8-129 125-222 (433) 19 1w96_A ACC, acetyl-coenzyme A 98.9 4.8E-08 2E-12 71.2 13.3 102 6-134 175-302 (554) 20 1iow_A DD-ligase, DDLB, D-ALA\ 98.9 1.7E-07 7E-12 67.7 15.7 168 5-224 97-271 (306) 21 3i12_A D-alanine-D-alanine lig 98.9 2.9E-07 1.2E-11 66.1 15.9 170 5-224 141-316 (364) 22 3glk_A Acetyl-COA carboxylase 98.8 1.1E-07 4.6E-12 68.9 13.4 103 6-135 166-297 (540) 23 2vpq_A Acetyl-COA carboxylase; 98.8 4.4E-08 1.9E-12 71.5 10.8 108 5-135 115-224 (451) 24 2pvp_A D-alanine-D-alanine lig 98.8 2E-08 8.3E-13 73.8 8.6 95 5-127 150-245 (367) 25 2i87_A D-alanine-D-alanine lig 98.8 5.5E-07 2.3E-11 64.3 15.8 93 5-126 130-229 (364) 26 1a9x_A Carbamoyl phosphate syn 98.8 2E-07 8.4E-12 67.2 13.0 324 6-395 676-1054(1073) 27 3jrx_A Acetyl-COA carboxylase 98.8 2.6E-07 1.1E-11 66.4 13.4 102 6-134 182-312 (587) 28 3n6r_A Propionyl-COA carboxyla 98.8 2.3E-08 9.5E-13 73.4 7.8 111 5-138 116-228 (681) 29 3hbl_A Pyruvate carboxylase; T 98.7 5.4E-09 2.3E-13 77.5 4.3 107 5-134 119-227 (1150) 30 1e4e_A Vancomycin/teicoplanin 98.7 4.4E-07 1.8E-11 64.9 13.1 169 5-224 133-306 (343) 31 2dzd_A Pyruvate carboxylase; b 98.7 1.3E-07 5.5E-12 68.4 9.9 106 6-134 122-229 (461) 32 3eth_A Phosphoribosylaminoimid 98.7 2.7E-08 1.1E-12 72.9 6.2 157 5-221 80-236 (355) 33 3lwb_A D-alanine--D-alanine li 98.7 4.5E-07 1.9E-11 64.8 12.2 170 5-222 152-329 (373) 34 2w70_A Biotin carboxylase; lig 98.6 3.3E-07 1.4E-11 65.8 10.3 107 6-135 117-226 (449) 35 2r7k_A 5-formaminoimidazole-4- 98.6 2.8E-07 1.2E-11 66.2 8.6 105 5-140 125-229 (361) 36 3k3p_A D-alanine--D-alanine li 98.5 2.9E-06 1.2E-10 59.5 13.1 171 5-224 162-337 (383) 37 3k5i_A Phosphoribosyl-aminoimi 98.5 5.9E-07 2.5E-11 64.1 9.5 96 5-131 124-221 (403) 38 2r85_A PURP protein PF1517; AT 98.5 4.9E-06 2.1E-10 58.0 13.4 98 5-135 101-198 (334) 39 2fb9_A D-alanine:D-alanine lig 98.5 2E-06 8.4E-11 60.6 11.0 164 5-223 119-285 (322) 40 2qf7_A Pyruvate carboxylase pr 98.4 2.5E-07 1E-11 66.5 5.6 108 5-135 135-244 (1165) 41 1kjq_A GART 2, phosphoribosylg 98.4 2E-06 8.5E-11 60.5 9.5 98 6-127 115-212 (391) 42 2cqy_A Propionyl-COA carboxyla 98.3 2E-07 8.6E-12 67.1 3.4 90 7-118 11-102 (108) 43 2pn1_A Carbamoylphosphate synt 98.3 2.3E-06 9.6E-11 60.2 7.2 97 6-135 116-212 (331) 44 3dmy_A Protein FDRA; predicted 98.1 0.00019 7.9E-09 47.6 13.4 129 267-397 250-414 (480) 45 1uc8_A LYSX, lysine biosynthes 98.0 6.7E-06 2.8E-10 57.1 5.5 49 6-55 90-138 (280) 46 3mwd_B ATP-citrate synthase; A 97.7 0.00059 2.5E-08 44.3 10.4 125 265-393 167-316 (334) 47 2yv2_A Succinyl-COA synthetase 97.6 0.0036 1.5E-07 39.1 13.5 122 266-393 151-293 (297) 48 2fp4_A Succinyl-COA ligase [GD 97.5 0.00044 1.8E-08 45.2 8.6 128 265-394 151-301 (305) 49 2nu8_A Succinyl-COA ligase [AD 97.3 0.0058 2.4E-07 37.8 12.2 124 265-395 143-287 (288) 50 3dmy_A Protein FDRA; predicted 97.3 0.0061 2.6E-07 37.6 11.8 120 266-396 112-236 (480) 51 2yv1_A Succinyl-COA ligase [AD 97.1 0.0099 4.2E-07 36.2 11.6 119 266-392 150-289 (294) 52 1i7n_A Synapsin II; synapse, p 97.0 8E-05 3.4E-09 50.0 0.1 94 5-126 114-211 (309) 53 1oi7_A Succinyl-COA synthetase 96.9 0.019 7.9E-07 34.4 11.5 119 266-391 144-283 (288) 54 1z2n_X Inositol 1,3,4-trisphos 96.9 0.0025 1.1E-07 40.2 6.8 98 6-125 100-199 (324) 55 2z04_A Phosphoribosylaminoimid 96.8 0.0035 1.5E-07 39.2 6.7 95 6-129 94-188 (365) 56 2pbz_A Hypothetical protein; N 96.8 0.0004 1.7E-08 45.4 1.8 92 5-137 99-190 (320) 57 2p0a_A Synapsin-3, synapsin II 96.5 0.00033 1.4E-08 46.0 0.2 94 5-127 131-228 (344) 58 2q7d_A Inositol-tetrakisphosph 96.3 0.0096 4.1E-07 36.3 6.4 63 5-80 117-190 (346) 59 1pk8_A RAT synapsin I; ATP bin 96.1 0.0022 9.4E-08 40.5 2.4 78 14-119 237-316 (422) 60 2csu_A 457AA long hypothetical 96.0 0.085 3.6E-06 30.1 13.0 121 266-394 149-286 (457) 61 3l6u_A ABC-type sugar transpor 95.8 0.1 4.3E-06 29.5 12.3 92 296-396 170-262 (293) 62 1tjy_A Sugar transport protein 93.7 0.35 1.5E-05 26.0 11.0 87 300-395 168-255 (316) 63 2h0a_A TTHA0807, transcription 91.9 0.5 2.1E-05 25.0 6.7 100 282-395 141-244 (276) 64 2ioy_A Periplasmic sugar-bindi 91.2 0.73 3.1E-05 23.9 13.5 89 298-395 160-249 (283) 65 3df7_A Putative ATP-grAsp supe 89.8 0.25 1.1E-05 27.0 3.6 68 6-127 112-179 (305) 66 2fvy_A D-galactose-binding per 89.4 1 4.3E-05 22.9 12.8 106 281-395 161-269 (309) 67 3mvn_A UDP-N-acetylmuramate:L- 88.9 1.1 4.6E-05 22.8 6.9 30 367-396 108-137 (163) 68 2rgy_A Transcriptional regulat 88.4 1.2 5E-05 22.5 7.2 102 282-395 150-255 (290) 69 1h4x_A SPOIIAA, anti-sigma F f 88.4 0.52 2.2E-05 24.9 4.4 83 305-391 26-111 (117) 70 2fn9_A Ribose ABC transporter, 88.3 1.2 5.1E-05 22.5 12.1 88 299-395 169-258 (290) 71 3egc_A Putative ribose operon 87.4 0.75 3.1E-05 23.9 4.7 100 282-395 147-252 (291) 72 3bf0_A Protease 4; bacterial, 86.9 1.4 5.7E-05 22.2 5.8 64 301-367 320-386 (593) 73 3kke_A LACI family transcripti 86.8 1.5 6.2E-05 21.9 8.1 116 268-395 133-263 (303) 74 3dbi_A Sugar-binding transcrip 86.8 1.5 6.3E-05 21.9 8.6 117 267-395 182-308 (338) 75 3gv0_A Transcriptional regulat 86.2 1.6 6.7E-05 21.7 12.3 116 268-395 129-254 (288) 76 1gsa_A Glutathione synthetase; 85.5 0.69 2.9E-05 24.1 3.7 44 9-54 125-168 (316) 77 3gyb_A Transcriptional regulat 84.1 2 8.3E-05 21.1 11.5 100 282-395 138-242 (280) 78 8abp_A L-arabinose-binding pro 84.1 2 8.4E-05 21.1 10.7 105 283-394 156-266 (306) 79 3g1w_A Sugar ABC transporter; 83.5 2.1 8.8E-05 20.9 13.0 88 299-395 165-254 (305) 80 3d8u_A PURR transcriptional re 82.8 2.2 9.4E-05 20.7 12.9 102 282-395 142-247 (275) 81 3h75_A Periplasmic sugar-bindi 82.5 2.3 9.7E-05 20.7 12.0 81 300-389 184-268 (350) 82 2h3h_A Sugar ABC transporter, 82.0 2.4 0.0001 20.6 9.7 86 301-395 162-249 (313) 83 3brq_A HTH-type transcriptiona 80.9 2.6 0.00011 20.3 6.8 100 282-394 161-265 (296) 84 1gud_A ALBP, D-allose-binding 80.2 2.7 0.00012 20.2 11.4 88 299-395 171-260 (288) 85 3k9c_A Transcriptional regulat 79.4 2.9 0.00012 20.0 9.1 102 281-395 146-251 (289) 86 1jx6_A LUXP protein; protein-l 78.3 3.1 0.00013 19.8 11.3 104 282-395 196-300 (342) 87 2hsg_A Glucose-resistance amyl 77.6 3.3 0.00014 19.6 9.6 116 268-395 179-305 (332) 88 3kjx_A Transcriptional regulat 76.5 3.5 0.00015 19.4 9.1 116 268-395 187-313 (344) 89 3g85_A Transcriptional regulat 76.3 3.6 0.00015 19.4 9.7 103 282-395 149-256 (289) 90 2vk2_A YTFQ, ABC transporter p 75.3 3.8 0.00016 19.2 11.9 82 293-383 160-248 (306) 91 3clk_A Transcription regulator 75.3 3.8 0.00016 19.2 11.9 98 284-394 149-250 (290) 92 1sbo_A Putative anti-sigma fac 75.2 1.1 4.5E-05 22.9 1.8 81 303-387 26-110 (110) 93 2fep_A Catabolite control prot 74.5 4 0.00017 19.1 11.6 102 282-396 156-262 (289) 94 2x7x_A Sensor protein; transfe 72.6 4.4 0.00018 18.8 11.3 123 267-397 129-262 (325) 95 1th8_B Anti-sigma F factor ant 72.4 3.6 0.00015 19.3 4.0 84 304-390 26-112 (116) 96 3c3k_A Alanine racemase; struc 72.2 4.5 0.00019 18.8 9.5 115 268-395 126-250 (285) 97 2rjo_A Twin-arginine transloca 70.8 4.8 0.0002 18.6 10.0 85 301-394 176-263 (332) 98 3d02_A Putative LACI-type tran 67.5 5.6 0.00024 18.1 10.3 88 299-395 167-256 (303) 99 3ksm_A ABC-type sugar transpor 66.9 5.8 0.00024 18.0 10.7 84 302-394 168-253 (276) 100 3hs3_A Ribose operon repressor 66.1 6 0.00025 17.9 4.3 72 312-395 170-244 (277) 101 3llo_A Prestin; STAS domain, c 61.1 7.3 0.00031 17.3 4.3 98 269-391 31-138 (143) 102 3miz_A Putative transcriptiona 60.3 7.6 0.00032 17.2 5.2 103 282-395 153-264 (301) 103 3brs_A Periplasmic binding pro 60.1 7.6 0.00032 17.2 11.4 85 301-394 170-256 (289) 104 2dri_A D-ribose-binding protei 59.3 7.9 0.00033 17.1 15.7 83 304-395 165-248 (271) 105 3oj0_A Glutr, glutamyl-tRNA re 57.5 8.4 0.00035 16.9 4.4 17 70-86 47-64 (144) 106 2ka5_A Putative anti-sigma fac 57.2 8.5 0.00036 16.9 4.6 80 305-390 36-121 (125) 107 2vy9_A Anti-sigma-factor antag 57.0 8.6 0.00036 16.9 6.9 96 297-395 16-118 (123) 108 3oir_A Sulfate transporter sul 56.4 4.7 0.0002 18.6 2.0 83 306-396 39-130 (135) 109 3h5t_A Transcriptional regulat 56.0 8.9 0.00038 16.8 12.5 101 280-395 226-332 (366) 110 3mgl_A Sulfate permease family 55.5 7.2 0.0003 17.4 2.9 87 305-396 35-127 (130) 111 3m9w_A D-xylose-binding peripl 54.5 9.4 0.0004 16.6 10.4 88 299-395 165-255 (313) 112 1byk_A Protein (trehalose oper 53.7 9.7 0.00041 16.5 11.2 81 302-395 155-235 (255) 113 3e3m_A Transcriptional regulat 51.9 10 0.00044 16.4 12.9 116 267-395 188-316 (355) 114 1dbq_A Purine repressor; trans 49.2 11 0.00048 16.1 7.3 106 277-395 143-253 (289) 115 3cs3_A Sugar-binding transcrip 49.1 11 0.00048 16.1 8.4 99 282-395 140-243 (277) 116 1w78_A FOLC bifunctional prote 48.1 12 0.0005 16.0 6.9 115 259-397 280-394 (422) 117 3fwz_A Inner membrane protein 47.2 12 0.00051 15.9 7.0 84 299-395 54-137 (140) 118 2x5e_A UPF0271 protein PA4511; 46.3 13 0.00053 15.8 8.4 64 315-379 103-170 (252) 119 3l9w_A Glutathione-regulated p 44.9 13 0.00056 15.7 7.7 31 9-42 20-50 (413) 120 3l49_A ABC sugar (ribose) tran 44.1 14 0.00057 15.6 9.9 82 305-395 173-259 (291) 121 3jy6_A Transcriptional regulat 44.1 14 0.00057 15.6 8.1 85 299-395 159-247 (276) 122 1qpz_A PURA, protein (purine n 44.0 14 0.00057 15.6 7.3 104 280-395 197-304 (340) 123 3huu_A Transcription regulator 43.7 14 0.00058 15.5 7.4 100 281-395 165-268 (305) 124 2iks_A DNA-binding transcripti 43.1 14 0.00059 15.5 10.4 97 284-395 162-263 (293) 125 3ctp_A Periplasmic binding pro 42.8 14 0.0006 15.4 9.1 115 268-395 174-297 (330) 126 3jvd_A Transcriptional regulat 41.9 15 0.00062 15.4 11.7 113 268-395 176-297 (333) 127 1jye_A Lactose operon represso 41.3 15 0.00063 15.3 10.0 114 268-395 181-304 (349) 128 3k1t_A Glutamate--cysteine lig 41.2 7.8 0.00033 17.2 1.2 14 183-196 211-224 (432) 129 1dys_A Endoglucanase, cellulas 40.0 16 0.00066 15.2 5.0 67 291-357 173-265 (348) 130 2oga_A Transaminase; PLP-depen 38.4 17 0.0007 15.0 3.5 23 325-347 370-394 (399) 131 2i4r_A V-type ATP synthase sub 37.9 13 0.00056 15.6 1.9 54 304-365 37-92 (102) 132 3dr4_A Putative perosamine syn 37.5 9 0.00038 16.7 1.0 58 340-398 321-389 (391) 133 3lk7_A UDP-N-acetylmuramoylala 37.3 17 0.00073 14.9 6.8 93 294-397 323-415 (451) 134 3h5o_A Transcriptional regulat 36.9 18 0.00074 14.8 8.4 116 267-395 179-305 (339) 135 2j0w_A Lysine-sensitive aspart 36.8 18 0.00074 14.8 3.9 36 266-301 190-225 (449) 136 3p04_A Uncharacterized BCR; SE 33.4 20 0.00084 14.5 4.8 30 340-372 19-48 (87) 137 1vbg_A Pyruvate,orthophosphate 33.1 14 0.0006 15.4 1.5 17 12-28 34-50 (876) 138 2r3s_A Uncharacterized protein 33.1 20 0.00085 14.5 5.7 46 279-328 152-197 (335) 139 1h6z_A Pyruvate phosphate diki 32.9 15 0.00061 15.4 1.5 16 12-27 35-50 (913) 140 3cqy_A Anhydro-N-acetylmuramic 32.4 17 0.00072 14.9 1.8 114 276-392 190-338 (370) 141 3hcw_A Maltose operon transcri 31.8 21 0.00088 14.3 7.6 71 311-395 183-258 (295) 142 2vos_A Folylpolyglutamate synt 31.0 22 0.00091 14.2 6.5 119 254-396 324-448 (487) 143 1fov_A Glutaredoxin 3, GRX3; a 30.8 19 0.00082 14.6 1.8 25 6-30 15-39 (82) 144 2khp_A Glutaredoxin; thioredox 30.4 22 0.00093 14.2 2.8 35 6-41 20-55 (92) 145 3fvh_A Serine/threonine-protei 29.8 16 0.00069 15.0 1.3 13 260-272 184-196 (237) 146 2uvj_A TOGB, ABC type periplas 29.7 23 0.00096 14.1 3.1 33 300-333 292-324 (408) 147 3gdw_A Sigma-54 interaction do 28.4 24 0.001 13.9 13.3 115 266-394 2-124 (139) 148 1kbl_A PPDK, pyruvate phosphat 27.7 20 0.00085 14.4 1.5 30 104-133 234-267 (873) 149 2vsy_A XCC0866; transferase, g 27.6 25 0.001 13.9 2.6 47 351-397 475-522 (568) 150 2ols_A Phosphoenolpyruvate syn 26.3 20 0.00082 14.5 1.2 59 73-131 148-214 (794) 151 3nyt_A Aminotransferase WBPE; 26.1 19 0.0008 14.6 1.1 13 385-397 347-359 (367) 152 2rbd_A BH2358 protein; putativ 23.6 29 0.0012 13.4 1.9 17 187-203 59-75 (171) 153 2kob_A Uncharacterized protein 23.6 29 0.0012 13.4 5.7 49 161-211 43-91 (108) 154 3bbl_A Regulatory protein of L 23.5 29 0.0012 13.4 12.4 82 301-395 166-254 (287) 155 1o0p_A Splicing factor U2AF 65 21.8 32 0.0013 13.1 6.4 58 39-110 37-95 (104) 156 2yxb_A Coenzyme B12-dependent 21.0 33 0.0014 13.0 12.2 104 282-396 38-144 (161) 157 1id1_A Putative potassium chan 20.9 33 0.0014 13.0 9.1 85 299-396 54-138 (153) 158 2btm_A TIM, protein (triosepho 20.8 33 0.0014 13.0 2.2 44 296-347 206-250 (252) 159 1eu8_A Trehalose/maltose bindi 20.1 34 0.0014 12.9 3.4 20 300-319 300-319 (409) No 1 >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Probab=100.00 E-value=0 Score=981.33 Aligned_cols=394 Identities=43% Similarity=0.691 Sum_probs=387.6 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 98657999999998689888815747999999999872998699971213687656565567777777079958999999 Q gi|254781049|r 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 1 M~L~EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) |||||||||+||++||||||+|.+++|++|+.+++++|+.|+||+|||||+||||||++. ++..|||++++|++|+. T Consensus 1 M~l~EyqaK~ll~~~gipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQv~aGgRGKa~~~---~~~~GGVk~~~s~~ea~ 77 (395) T 2fp4_B 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS---SGLKGGVHLTKDPEVVG 77 (395) T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEET---TSCBCSEEEESCHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC---CCCCCCEEEECCHHHHH T ss_conf 960289999999986998999323289999999999709996899904225877546677---78888489959999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECC Q ss_conf 99998618765442122222443301103455565058999998347780489984478840245557483122033214 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLID 160 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id 160 (398) +++++|||++++|+||++.|++|++|||||+++|.+|||+|+++||++++|++|+|++||||||++|+++|++|.+.++| T Consensus 78 ~~a~~~lg~~l~t~qt~~~G~~v~~vlvee~~~i~~E~Ylsi~iDr~~~~~~ii~S~eGGvdIEeva~~~p~~I~~~~i~ 157 (395) T 2fp4_B 78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID 157 (395) T ss_dssp HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEEC T ss_conf 99999745224324357788242459999666654107999996268885699980788986556566441212246621 Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHH Q ss_conf 44578957888788751988899885999999998999955975102326799059967994001321573556410278 Q gi|254781049|r 161 PLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 (398) Q Consensus 161 ~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iDDnA~fR~~~~~ 240 (398) |..+++++++++++..+|++++...++.+++.+||++|.++||+|+|||||++|++|+++|||||++|||||+|||+++. T Consensus 158 p~~g~~~~~~~~~~~~lgl~~~~~~~~~~ii~~Ly~~F~e~Da~LlEINPLv~t~~g~~~aLDaK~~iDDnA~fR~~~~~ 237 (395) T 2fp4_B 158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 237 (395) T ss_dssp TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECCCCCEEEEEEEECCCCCHHHHCCCHH T ss_conf 44455536899999974996677788999999999999856823066011488699987972246224656565353212 Q ss_pred HHHCCCCCCHHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 63100015622245775398644228817999555036899999999658996248842788898999999999861998 Q gi|254781049|r 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSS 320 (398) Q Consensus 241 ~~~d~~~~~~~E~~A~~~~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~ 320 (398) ++||+++++|.|.+|++++|+||+||||||||||||||||+|||+|+++||+||||||+||+||.++|++||+++++||+ T Consensus 238 ~~~d~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGLaMaTmD~i~~~Gg~pANFlD~GG~a~~e~v~~a~~iil~d~~ 317 (395) T 2fp4_B 238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK 317 (395) T ss_dssp TTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTT T ss_pred HCCCCCCCCHHHHHHHHCCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC T ss_conf 13677559977899987598665147827898437642110257898715773315641788878999999999963999 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC Q ss_conf 65899963586132899999999999972999879997489858999999997699589949989999999998506 Q gi|254781049|r 321 VKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 321 vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) ||+|||||||||+|||+||+||++|+++.++++||||||+|||+++|+++|+++|+++++++||++||+++|++++. T Consensus 318 vk~iliNIfGGI~~cd~vA~GIi~A~~e~~~~vpivVRl~Gtn~~eg~~iL~~sgl~i~~~~~l~~A~~kaV~~~~~ 394 (395) T 2fp4_B 318 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTK 394 (395) T ss_dssp CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTTC- T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC T ss_conf 87899998087303599999999999961999878999998998999999997799748748999999999999636 No 2 >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Probab=100.00 E-value=0 Score=966.55 Aligned_cols=387 Identities=51% Similarity=0.822 Sum_probs=383.9 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 98657999999998689888815747999999999872998699971213687656565567777777079958999999 Q gi|254781049|r 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 1 M~L~EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) |||||||||+||++||||||+|.+++|++|+.++++++++++||||||||+|||||+ |||++++|++|+. T Consensus 1 M~l~EyqaK~ll~~~gipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQvlaGGRGKa----------GGVki~~s~~ea~ 70 (388) T 2nu8_B 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKA----------GGVKVVNSKEDIR 70 (388) T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTT----------TCEEEECSHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC----------CEEEEECCHHHHH T ss_conf 963499999999985998999427899999999999868995999855247887666----------7179969999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECC Q ss_conf 99998618765442122222443301103455565058999998347780489984478840245557483122033214 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLID 160 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id 160 (398) +++++|||++++|+||+++|++|++|||||+++|.+|||+|+++||++++|++++|.+||||||++|+++|++|.++++| T Consensus 71 ~~a~~~lg~~l~t~qt~~~G~~v~~vlvee~~~i~~E~Ylsi~~Dr~~~~~~ii~S~~GGvdIEeva~~~p~~i~~~~id 150 (388) T 2nu8_B 71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD 150 (388) T ss_dssp HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEC T ss_conf 99999847320131347788276699997035765006999996377782699985689974655445384523003567 Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHH Q ss_conf 44578957888788751988899885999999998999955975102326799059967994001321573556410278 Q gi|254781049|r 161 PLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 (398) Q Consensus 161 ~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iDDnA~fR~~~~~ 240 (398) |..+++++++|.++..+|+++....++.+++.+||++|.++||+|+|||||++|++|+++|||||+++||||+||||+|. T Consensus 151 ~~~g~~~~~~~~~~~~lg~~~~~~~~~~~~i~~Ly~~F~~~D~~llEINPLv~t~~g~l~aLDaK~~~DdnA~fR~~~~~ 230 (388) T 2nu8_B 151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230 (388) T ss_dssp TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHH T ss_conf 45578879999999864997377899999999999999856764045553135589978997635325665000492445 Q ss_pred HHHCCCCCCHHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC Q ss_conf 63100015622245775398644228817999555036899999999658996248842788898999999999861998 Q gi|254781049|r 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSS 320 (398) Q Consensus 241 ~~~d~~~~~~~E~~A~~~~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~ 320 (398) +++++++++|.|.+|++++|+||+||||||||||||||||+|||+|+++||+||||||+||+||.|+|++||+++++||+ T Consensus 231 ~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~mvnGaGlamaTmD~i~~~Gg~pANfld~gG~a~~e~v~~a~kiil~d~~ 310 (388) T 2nu8_B 231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDK 310 (388) T ss_dssp HHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTT T ss_pred HCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC T ss_conf 41476647976999876797632579738999658429999999999849984226873699978999999999865999 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC Q ss_conf 65899963586132899999999999972999879997489858999999997699589949989999999998506 Q gi|254781049|r 321 VKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 321 vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) ||+|||||||||+|||+||+||++|+++.++++||||||+|||+++|+++|+++|+++++++||++||+++|+++|| T Consensus 311 vk~iliNIfGGI~rcd~vA~GIi~A~~~~~~~vpivVRl~Gtn~eeg~~il~~~gl~i~~~~~l~~Aa~~~V~~~~g 387 (388) T 2nu8_B 311 VKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEG 387 (388) T ss_dssp CCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHHTTT T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCC T ss_conf 65899996076455899999999999970999878999998998999999997899868708999999999998559 No 3 >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Probab=100.00 E-value=0 Score=728.02 Aligned_cols=373 Identities=23% Similarity=0.294 Sum_probs=315.9 Q ss_pred CCCHHHHHHHHHHCCCCCCCCEE------ECCHHHHHHHH---HHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 86579999999986898888157------47999999999---872-998699971213687656565567777777079 Q gi|254781049|r 2 NIHEYQAKALLRKYNVPVAKGVV------ISSVHAAESAI---KTL-PGPLYVVKSQIHAGGRGKGRFKELPADSKGGVR 71 (398) Q Consensus 2 ~L~EyqaK~lL~~~GIpvp~g~~------a~s~~ea~~~a---~~i-g~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~ 71 (398) .|||||||+||++||||||++.+ +++..++.... .|+ +.| +|+|+|||+|||||+ |||+ T Consensus 5 ~l~E~~~K~lL~~~gi~vp~~~~~~~~~~v~~~~~~a~~~~~~~~l~~~~-~VvKaqVl~ggRGKa----------GGVk 73 (425) T 3mwd_A 5 AISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQN-LVVKPDQLIKRRGKL----------GLVG 73 (425) T ss_dssp EECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSC-EEEEECSSCSCTTTT----------TCCE T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCC-EEEECCCCCCCCCCC----------CEEE T ss_conf 33699999999980997888654532232374578998733487346788-799777346887646----------5699 Q ss_pred EECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCC--EEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHH Q ss_conf 95899999999998618765442122222443301103455565--0589999983477804899844788402455574 Q gi|254781049|r 72 VESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADIL--RELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKD 149 (398) Q Consensus 72 l~~s~~ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~--~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~ 149 (398) ++.|++|+.+++++||++++ |+.+.|.++++||||+|+++. .|||+|+.+||+++ .+++|++|||+||++++. T Consensus 74 l~~~~eea~~~a~~~l~~~~---~~~~~g~~v~~vlVE~mv~~~~~~El~vgi~~D~~~~--~vi~sg~GGvdIE~vad~ 148 (425) T 3mwd_A 74 VNLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGD--YVLFHHEGGVDVGDVDAK 148 (425) T ss_dssp EEECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEE--EEEEESSCSTTCCSHHHH T ss_pred EECCHHHHHHHHHHHHCCCC---CCCCCCCEECEEEEEECCCCCCCEEEEEEEEECCCCC--EEEEECCCCCEEEEECCC T ss_conf 97999999999999863134---4378997767699996245788739999999638886--068977888578753245 Q ss_pred CHHHHEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEEC Q ss_conf 83122033214445789578887887519888998859999999989999559751023267990599679940013215 Q gi|254781049|r 150 YPQKIFKLLIDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFD 229 (398) Q Consensus 150 ~p~~I~~~~id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iD 229 (398) +|..+.. +++ .+.....+. ....+.++....++.+++.+||++|.++|++++|||||++|++| ++|||||++|| T Consensus 149 ~p~~i~~--~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~L~~lf~e~d~~llEINPLvvt~~g-~~alDAki~iD 222 (425) T 3mwd_A 149 AQKLLVG--VDE--KLNPEDIKK-HLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD 222 (425) T ss_dssp SEEEEEE--TTC--CCCHHHHHH-TTTTTSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEE T ss_pred CCEEEEC--CCC--CCCHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCC-EEEEEEEECCC T ss_conf 8602424--641--112789999-97513966789999999999999998538500016420670685-49985363147 Q ss_pred CCHHHHHHHHHHHHCCCC-------------CCHHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHCCC--CCC Q ss_conf 735564102786310001-------------56222457753986442288179995550368999999996589--962 Q gi|254781049|r 230 DNALYRHLDIQELRDVSE-------------EDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGG--APA 294 (398) Q Consensus 230 DnA~fR~~~~~~~~d~~~-------------~~~~E~~A~~~~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg--~pA 294 (398) |||+|||+++....+..+ +++.|.+|+++++|||+||||||||+|||||+|+|||+|+++|| +|| T Consensus 223 dnA~fR~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~a~~~~l~yV~LdG~Ig~~~nGaGl~mat~D~i~~~gg~~~pA 302 (425) T 3mwd_A 223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA 302 (425) T ss_dssp GGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBC T ss_pred CCHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC T ss_conf 76344184554133336860333101122355544433320661598048867999732302456899999827887886 Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCHHHHHHHH---HHHHHHHHHCC-----CCCCEEEECCCC Q ss_conf 4884278889899999999986----19986589996358613289999---99999999729-----998799974898 Q gi|254781049|r 295 NFLDVGGGADQDKVAAAFKIIT----SDSSVKGILINIFGGIMRCDVLV---KGILSAVKEVK-----INIPLVMRLEGA 362 (398) Q Consensus 295 NFlD~gG~a~~e~~~~a~~~il----~~~~vk~iliNifGGI~~cd~vA---~gii~a~~~~~-----~~~pivvRl~Gt 362 (398) ||||+||+|+.++++++|++++ +||++|+|||||||||+|||+|| +||++|+++.+ +++||||||+|| T Consensus 303 NflD~gG~~~~e~v~~~~~~~l~l~~~~~~v~~i~ini~GGI~~~~~va~~~~gIv~a~~~~~~~~~~~~vpivvRl~Gt 382 (425) T 3mwd_A 303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP 382 (425) T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBST T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC T ss_conf 57887289968899999999997761389988899997488544378887766899999984102245774099989989 Q ss_pred CHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHC Q ss_conf 589999999976----99589949989999999998506 Q gi|254781049|r 363 NVDIGNRLIAES----GLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 363 n~~~g~~il~~~----g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) |+++|+++|+++ |+|++.+ +++.|+..+|.+|=+ T Consensus 383 n~eeg~~iL~~~g~~~g~pi~v~-~~~~~~~~~v~~a~~ 420 (425) T 3mwd_A 383 NYQEGLRVMGEVGKTTGIPIHVF-GTETHMTAIVGMALG 420 (425) T ss_dssp THHHHHHHHHHHHHHHTCCEEEE-CTTSCTTHHHHHHTT T ss_pred CHHHHHHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHHHC T ss_conf 88999999997234329967996-660249999999855 No 4 >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=1.4e-44 Score=311.92 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=175.8 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE-ECCHHHH Q ss_conf 986579999999986898888157479999999998729986999712136876565655677777770799-5899999 Q gi|254781049|r 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRV-ESSLKSV 79 (398) Q Consensus 1 M~L~EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l-~~s~~ea 79 (398) +.|||||||+||++||||||++.+++|++|+..++++||||+ |+|+|. +...||++.|||++ ..+.+++ T Consensus 18 ~~L~E~qak~lL~~~GIpvP~~~~~~s~~ea~~~a~~ig~Pv-VlK~~~---------~~~~~k~~~GgV~l~i~~~~~~ 87 (238) T 1wr2_A 18 TAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPV-VLKLMS---------PQILHKSDAKVVMLNIKNEEEL 87 (238) T ss_dssp CEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCSSE-EEEEEC---------TTCCCHHHHTCEEEEECSHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCE-EEEEEC---------CCCCCCCCCCEEECCCCCHHHH T ss_conf 866999999999976999999517699999999999819978-999845---------8777689851584667887999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEEC Q ss_conf 99999861876544212222244330110345556505899999834778048998447884024555748312203321 Q gi|254781049|r 80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLI 159 (398) Q Consensus 80 ~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~i 159 (398) ..++..++. +.|+...+.++++||||+|+++.+|||+|+++||+++++++++ .||+++|..++..+..+...+. T Consensus 88 ~~a~~~~~~----~~~~~~~~~~v~~vlVe~~~~~~~Elylgi~~D~~~g~vi~~~--~GG~~iE~~~~~~~~~~p~~~~ 161 (238) T 1wr2_A 88 KKKWEEIHE----NAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFG--LGGIFVEILKDVTFRLVPITEK 161 (238) T ss_dssp HHHHHHHHH----HHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEE--ECSTTHHHHCCCEEEESSCCHH T ss_pred HHHHHHHHH----HHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEE--CCCCCEEEECCCCCCCCCCCHH T ss_conf 999999887----6641287653351899970358718999986478987279995--3886158850201455786888 Q ss_pred CCCCCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCEEEECCCCC-EEEEEEEEEECCC Q ss_conf 444578957888788751-9888998859999999989999559751--0232679905996-7994001321573 Q gi|254781049|r 160 DPLIGVTSEDVASLCDML-ELQGQARIDGGDLFPNLYKAFCDKDMSL--LEINPLIIMKNGR-LRVLDSKISFDDN 231 (398) Q Consensus 160 d~~~gl~~~~~~~l~~~l-g~~~~~~~~~~~ii~~L~~~f~e~Da~l--iEINPLvvt~dg~-vvAlDAKi~iDDn 231 (398) ++...+...++..++... |.+......+.+++.+||++|.++++++ +|||||+++++|+ ++||||||++++. T Consensus 162 ~~~~~~~~~~~~~~l~g~~g~~~~d~~~l~~~i~~l~~l~~~~~~~l~elEINPL~v~~~~~~~vAlDAkv~l~~~ 237 (238) T 1wr2_A 162 DARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSRIILKPK 237 (238) T ss_dssp HHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEEEEECCC T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCEEEEEEEEEEECCC T ss_conf 9888776789999987743997568999999999999999828686689970283983399819999739996489 No 5 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=99.26 E-value=4.7e-10 Score=84.51 Aligned_cols=142 Identities=11% Similarity=0.166 Sum_probs=94.6 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) ..+|+++.+.|+|+|++..++|.+||.+++++||||+ +||+----|||| -+++.|.+|+.+.+++ T Consensus 130 ~~~r~~m~~~gvPv~~s~~v~s~eea~~~A~~IGyPV-iIrps~~~GG~G--------------m~iv~~~~eL~~~~~~ 194 (1073) T 1a9x_A 130 RRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPC-IIRPSFTMGGSG--------------GGIAYNREEFEEICAR 194 (1073) T ss_dssp HHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCSSE-EEEETTCCTTTT--------------CEEESSHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCE-EEEECCCCCCCC--------------CCEECCHHHHHHHHHH T ss_conf 9999999977999899722089999999998659988-999787789987--------------6077799999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCCC Q ss_conf 61876544212222244330110345556505899999834778048998447884024555748312203321444578 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGV 165 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~gl 165 (398) =+. -.+.+.|+||+.+...+|+-+=++.|.. +..+++++.+ .++.+...+.+.|. +.|...+ T Consensus 195 a~~-----------~s~~~~vliEk~i~g~keIEvqVlrD~~-gn~i~v~~~E---~~d~~GihtgdsI~---vaPa~tL 256 (1073) T 1a9x_A 195 GLD-----------LSPTKELLIDESLIGWKEYEMEVVRDKN-DNCIIVCSIE---NFDAMGIHTGDSIT---VAPAQTL 256 (1073) T ss_dssp HHH-----------HCTTSCEEEEECCTTSEEEEEEEEECTT-CCEEEEEEEE---ESSCTTSCGGGSCE---EESCCSC T ss_pred HHH-----------HCCCCCEEEEEECCCCEEEEEEEEECCC-CCEEEEEECH---HHHHHCCCCCCEEE---EECCCCC T ss_conf 997-----------3899867999851785589999987179-9889994101---13342022466048---8127638 Q ss_pred CHH-------HHHHHHHHCCCC Q ss_conf 957-------888788751988 Q gi|254781049|r 166 TSE-------DVASLCDMLELQ 180 (398) Q Consensus 166 ~~~-------~~~~l~~~lg~~ 180 (398) ++. .+.+++..+|+. T Consensus 257 ~d~~~q~lr~aA~kia~~l~~~ 278 (1073) T 1a9x_A 257 TDKEYQIMRNASMAVLREIGVE 278 (1073) T ss_dssp CHHHHHHHHHHHHHHHHHHTCC T ss_pred CHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999999974943 No 6 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=99.24 E-value=1.8e-10 Score=87.19 Aligned_cols=101 Identities=22% Similarity=0.370 Sum_probs=83.2 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) -+.+|++++++|||+|++.++++.+||.++++++|||+ |+|+--.+||| ||.++.+.+|+.++.. T Consensus 103 K~~~k~~~~~~gipt~~~~~~~~~~ea~~~~~~~g~P~-VIKp~~~~gGk--------------Gv~v~~~~~e~~~al~ 167 (424) T 2yw2_A 103 KAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGAPI-VVKADGLAAGK--------------GAVVCETVEKAIETLD 167 (424) T ss_dssp HHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSE-EEEESSCCTTC--------------SEEEESSHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCCC--------------CCEEEEEHHHHHHHHH T ss_conf 89999999984989634445561999999998649978-99857876777--------------7388850266899999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCC Q ss_conf 86187654421222224433011034555650589999983477 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTS 128 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~ 128 (398) ..+.... .|..-++|+|||.+.. .|+-+-+..|... T Consensus 168 ~~~~~~~-------~~~~~~~vlvEe~l~G-~e~s~~~~~dg~~ 203 (424) T 2yw2_A 168 RFLNKKI-------FGKSSERVVIEEFLEG-EEASYIVMINGDR 203 (424) T ss_dssp HHHTSCT-------TGGGGSSEEEEECCCS-EEEEEEEEEETTE T ss_pred HHHHHHH-------HCCCCCCEEEEEEECC-CCEEEEEEECCCC T ss_conf 9753212-------1267873899987538-6217999987994 No 7 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=99.15 E-value=2.3e-09 Score=79.95 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=106.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCC---------------------CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEE Q ss_conf 881799955503689999999965899---------------------62488427888989999999998619986589 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGA---------------------PANFLDVGGGADQDKVAAAFKIITSDSSVKGI 324 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~---------------------pANFlD~gG~a~~e~~~~a~~~il~~~~vk~i 324 (398) .++|+++.|++|++.-+.|.....|.+ +.|=+|+++.++.+...++++.+++||++.+| T Consensus 293 g~rvaivs~sGG~~~l~aD~~~~~Gl~l~~ls~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~dp~vD~v 372 (457) T 2csu_A 293 GNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDML 372 (457) T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEE T ss_conf 98189997781688999999998599858999999999862155655776975388999999999999999739997989 Q ss_pred EEE-CCCCH--HHHHHHHHHHHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 996-35861--3289999999999997299987999-74898589999999976995899499899999999985 Q gi|254781049|r 325 LIN-IFGGI--MRCDVLVKGILSAVKEVKINIPLVM-RLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 325 liN-ifGGI--~~cd~vA~gii~a~~~~~~~~pivv-Rl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) ++. .++.. ..++.+++.++++.++.+.++||++ .+.|+..++.++.|+++|++++ .+.++|++....+. T Consensus 373 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kPvv~~~~g~~~~~~~~~~l~~~Gip~f--~~pe~a~~Al~~l~ 445 (457) T 2csu_A 373 IAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTY--ERPEDVASAAYALV 445 (457) T ss_dssp EEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCEE--SSHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHH T ss_conf 99974786567874799999999999848999789997897660999999986899867--99999999999999 No 8 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=99.15 E-value=1.5e-09 Score=81.18 Aligned_cols=199 Identities=21% Similarity=0.199 Sum_probs=118.5 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) --+|+++++||||+|++..+++.+||.+.++++++|+ |||+.-++||+ ||.++.+.+|+.++.++ T Consensus 125 ~f~k~~m~~~~IPta~~~~~~~~~ea~~~~~~~~~P~-VIK~dgla~GK--------------GV~i~~~~~ea~~~~~~ 189 (442) T 3lp8_A 125 GFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKLPL-VVKADGLAQGK--------------GTVICHTHEEAYNAVDA 189 (442) T ss_dssp HHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCSSE-EEEESSCCTTT--------------SEEEESSHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCE-EEECCCCCCCC--------------EEEEECCHHHHHHHHHH T ss_conf 9999999986888751001388999999986079978-99747667897--------------59997576899999998 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCC- Q ss_conf 6187654421222224433011034555650589999983477804899844788402455574831220332144457- Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIG- 164 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~g- 164 (398) ++-... .|..=.+|+|||++.. .|+=+-...|-..-.++-.. + |.. ++..-...|..| T Consensus 190 ~~~~~~-------~g~~~~~vvIEE~l~G-~E~S~~a~~dg~~~~~lp~~--q---D~K--------r~~d~d~GpnTGG 248 (442) T 3lp8_A 190 MLVHHK-------FGEAGCAIIIEEFLEG-KEISFFTLVDGSNPVILGVA--Q---DYK--------TIGDNNKGPNTGG 248 (442) T ss_dssp HHTSCT-------TGGGGSSEEEEECCCS-EEEEEEEEEESSCEEEEEEE--E---ECC--------EEEGGGEEEECSC T ss_pred HHHCCC-------CCCCCCEEEEEECCCC-CEEEEEEEECCCEEEECCCH--H---HCC--------CCCCCCCCCCCCC T ss_conf 753121-------2246761897521487-16778999738906968637--7---510--------2358999998898 Q ss_pred CCHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHCCCCC---CCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHH Q ss_conf 895788878875198889988-59999999989999559751---02326799059967994001321573556410278 Q gi|254781049|r 165 VTSEDVASLCDMLELQGQARI-DGGDLFPNLYKAFCDKDMSL---LEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 (398) Q Consensus 165 l~~~~~~~l~~~lg~~~~~~~-~~~~ii~~L~~~f~e~Da~l---iEINPLvvt~dg~vvAlDAKi~iDDnA~fR~~~~~ 240 (398) +-.+.-.. -+...... -...++....+.+.+..... +=++ |++|++| +..+ .=|+.|--|+.. T Consensus 249 MGa~sp~p-----~~~~~~~~~i~~~i~~p~~~~l~~~g~~y~GvLy~g-lmlt~~g-p~vi------E~N~RfGDPE~q 315 (442) T 3lp8_A 249 MGSYSKPN-----IITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAG-IIIKKNE-PKLL------EYNVRFGDPETQ 315 (442) T ss_dssp SEEEECTT-----SSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEE-EEEETTE-EEEE------EEESSCCTTHHH T ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEE-EEEECCC-CEEE------EEEEEECCCCCE T ss_conf 76667875-----344888889888742627899986699359887547-9996897-1699------874220798550 Q ss_pred HHHCCCCCCHHHH Q ss_conf 6310001562224 Q gi|254781049|r 241 ELRDVSEEDSREI 253 (398) Q Consensus 241 ~~~d~~~~~~~E~ 253 (398) .+....+.+-.+. T Consensus 316 ~ll~~l~sdl~~~ 328 (442) T 3lp8_A 316 SILPRLNSDFLKL 328 (442) T ss_dssp HHGGGBCSCHHHH T ss_pred EEECCCCCCHHHH T ss_conf 4530368869999 No 9 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=99.15 E-value=5.6e-10 Score=83.98 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=82.9 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) .-+|+++++||||+|++..+++.+||.+..+++++|+ |||+.-++||+ ||.++.+.+|+.++..+ T Consensus 108 ~faK~~m~~~~IPta~~~~f~~~~ea~~~~~~~~~Pv-VIKadgla~GK--------------GV~i~~~~~ea~~~~~~ 172 (412) T 1vkz_A 108 VYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPY-VIKADGLARGK--------------GVLILDSKEETIEKGSK 172 (412) T ss_dssp HHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSCSSE-EEEESSCCSSC--------------CEEEESSHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCCC--------------CEEEEECHHHHHHHHHH T ss_conf 9999999970889885110267999999987179978-99708667888--------------64898415768999998 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCC Q ss_conf 6187654421222224433011034555650589999983477 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTS 128 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~ 128 (398) ++..... +..-..|+|||++.. .|+=+-...|... T Consensus 173 ~~~~~~~-------~~~~~~vvIEe~l~G-~E~S~~~~~dG~~ 207 (412) T 1vkz_A 173 LIIGELI-------KGVKGPVVIDEFLAG-NELSAMAVVNGRN 207 (412) T ss_dssp HHHTSSS-------TTCCSCEEEEECCCS-EEEEEEEEEETTE T ss_pred HHCCCCC-------CCCCCEEEHHHHCCC-CEEEEEEEECCCE T ss_conf 6024202-------676302554755579-6237999943895 No 10 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=99.13 E-value=8.5e-10 Score=82.78 Aligned_cols=195 Identities=22% Similarity=0.279 Sum_probs=115.6 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) -.-+|+++++||||+|++..+++.+||.+.++++++|+ |+|+.-++||| ||.++.+.+|+.++.. T Consensus 102 K~~~k~~m~~~gIpt~~~~~~~~~~ea~~~~~~~~~P~-ViKp~~~a~gk--------------Gv~i~~~~~e~~~~~~ 166 (417) T 2ip4_A 102 KAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGVPV-VVKDSGLAAGK--------------GVTVAFDLHQAKQAVA 166 (417) T ss_dssp HHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHCSSE-EEECTTSCSST--------------TCEEESCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCCCE-EEECCCCCCCC--------------CEEEECCHHHHHHHHH T ss_conf 89999999981989888549935899999999769988-99727878987--------------6466400788888876 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHH--HCHHHHEEEECCCC Q ss_conf 8618765442122222443301103455565058999998347780489984478840245557--48312203321444 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAK--DYPQKIFKLLIDPL 162 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~--~~p~~I~~~~id~~ 162 (398) +++... .+ ..|+|||+++. .|+=+-...|-.. .+.+...+ |.....+ .-|..--.-.+.|. T Consensus 167 ~~~~~~--------~~---~~VlIEE~l~G-~E~s~~~~~dg~~--~~~l~~~q---d~kr~~~gd~GpntggmGa~~p~ 229 (417) T 2ip4_A 167 NILNRA--------EG---GEVVVEEYLEG-EEATVLALTDGET--ILPLLPSQ---DHKRLLDGDQGPMTGGMGAVAPY 229 (417) T ss_dssp HHTTSS--------SC---CCEEEEECCCS-CEEEEEEEESSSC--EEECCCBE---ECCEEETTTEEEECSCSEEEESC T ss_pred HHHHHC--------CC---CEEHHHHHHCC-CCCEEEEEECCCC--CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCC T ss_conf 432004--------68---60607656354-5525899963785--33466422---54134569999988987677888 Q ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCEEEECCCCCEEEEEEEEEECCCHHHHHHHH Q ss_conf 578957888788751988899885999999998999955975---10232679905996799400132157355641027 Q gi|254781049|r 163 IGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMS---LLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDI 239 (398) Q Consensus 163 ~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~---liEINPLvvt~dg~vvAlDAKi~iDDnA~fR~~~~ 239 (398) .+... .......+++....+.+...... .+-+. |.+|++| +.. +.=|+.|..|+. T Consensus 230 -~~~~~-------------~~~~~~~~i~~~~~~~l~~~g~~y~G~l~~g-lmlt~~g-p~v------iE~N~R~Gdpe~ 287 (417) T 2ip4_A 230 -PMDEA-------------TLRRVEEEILGPLVRGLRAEGVVYRGVVYAG-LMLTREG-PKV------LEFNARFGDPEA 287 (417) T ss_dssp -CCCHH-------------HHHHHHHHTHHHHHHHHHHTTCCCCEEEEEE-EEECSSC-EEE------EEEESSCCTTHH T ss_pred -CCCHH-------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEEECCC-CEE------EEEECCCCCCCC T ss_conf -63047-------------8999999999999999997199744300103-4784588-779------998513589865 Q ss_pred HHHHCCCCCCHHHH Q ss_conf 86310001562224 Q gi|254781049|r 240 QELRDVSEEDSREI 253 (398) Q Consensus 240 ~~~~d~~~~~~~E~ 253 (398) ..+....+.+-.+. T Consensus 288 ~~~l~~l~~dl~~~ 301 (417) T 2ip4_A 288 QALLPLLENDLVEL 301 (417) T ss_dssp HHHTTTBCSCHHHH T ss_pred CEEEECCCCCHHHH T ss_conf 34652246765888 No 11 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=99.12 E-value=1.2e-09 Score=81.88 Aligned_cols=101 Identities=24% Similarity=0.243 Sum_probs=83.1 Q ss_pred HHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH Q ss_conf 99999998689888815747999999999872998699971213687656565567777777079958999999999986 Q gi|254781049|r 7 QAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREI 86 (398) Q Consensus 7 qaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~i 86 (398) -+|+++.+||||+|++..+++.+||.+.++++++|.+|+|+.-++||+ ||.++.|.+|+.++.+++ T Consensus 131 f~k~~m~~~~Ipta~~~~~~~~~ea~~~i~~~~~P~vVIK~dgla~GK--------------GV~v~~~~~ea~~~~~~~ 196 (452) T 2qk4_A 131 FAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGK--------------GVIVAKSKEEACKAVQEI 196 (452) T ss_dssp HHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCSSCEEEEEESBC---C--------------CEEECSSHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHEEEECHHHHHHHHHHCCCCCEEEECCCCCCCC--------------CEEEEECHHHHHHHHHHH T ss_conf 999999851799970239946899999998669982787347657887--------------606552478999999987 Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCC Q ss_conf 1876544212222244330110345556505899999834778 Q gi|254781049|r 87 LGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSG 129 (398) Q Consensus 87 lg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~ 129 (398) +.... .|..-+.|+||+.+. +.|+=+-...|...- T Consensus 197 ~~~~~-------~g~~~~~VviEe~l~-G~E~S~~a~~dg~~~ 231 (452) T 2qk4_A 197 MQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDGKTV 231 (452) T ss_dssp TTC--------------CCEEEEECCC-SEEEEEEEEECSSCE T ss_pred HHCCC-------CCCCCCEEEEEECCC-CEEEEEEEEECCCCE T ss_conf 40364-------256797399996258-736777999869804 No 12 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=99.10 E-value=9.8e-10 Score=82.36 Aligned_cols=100 Identities=24% Similarity=0.363 Sum_probs=79.2 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) ...+|+++.+||||+|++..+++.+||.++++++++|+ |||+.-++||+ ||.++.+.+|+.++.+ T Consensus 124 K~faK~~m~~~~IPta~~~~~~~~~ea~~~~~~~g~P~-VIK~~glagGK--------------Gv~v~~~~~e~~~a~~ 188 (451) T 2yrx_A 124 KAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGAPI-VIKADGLAAGK--------------GVTVAQTVEEALAAAK 188 (451) T ss_dssp HHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCSSE-EEEECC----C--------------CEEEESSHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCE-EEECCCCCCCC--------------CCCCCCHHHHHHHHHH T ss_conf 79899999972979878389978999999986049966-99616455678--------------7302321566788888 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC Q ss_conf 8618765442122222443301103455565058999998347 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398) +++.... .|..-+.|+|||++. +.|+=+-...|-. T Consensus 189 ~~~~~~~-------~g~~~~~VvIEE~l~-G~E~S~~~~~dG~ 223 (451) T 2yrx_A 189 AALVDGQ-------FGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451) T ss_dssp HHHHHSC-------CBTTBCCEEEEECCC-SEEEEEEEEEETT T ss_pred HHHCCCC-------CCCCCCEEEEEEECC-CCCEEEEEEECCC T ss_conf 7630233-------356787088334048-8722689994399 No 13 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=99.02 E-value=4.3e-09 Score=78.16 Aligned_cols=189 Identities=21% Similarity=0.243 Sum_probs=120.2 Q ss_pred HHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH Q ss_conf 99999998689888815747999999999872998699971213687656565567777777079958999999999986 Q gi|254781049|r 7 QAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREI 86 (398) Q Consensus 7 qaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~i 86 (398) -+|+++++||||+|++..+++.++|.+..++.++|. |+|+.-++||+ ||.++.+.+++.++.+++ T Consensus 110 fak~~m~~~~IPta~~~~~~~~~~a~~~~~~~~~p~-VIK~dgla~GK--------------GV~v~~~~~ea~~a~~~~ 174 (431) T 3mjf_A 110 FTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPI-VIKADGLAAGK--------------GVIVAMTQEEAETAVNDM 174 (431) T ss_dssp HHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHCSSE-EEEESSSCTTC--------------SEEEECSHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCE-EEEECCCCCCC--------------CCEEEECHHHHHHHHHHH T ss_conf 999998752658874699589999998752569877-99716667877--------------626752116889989998 Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE------------ECCCCCCHHHHHHHCHHHH Q ss_conf 1876544212222244330110345556505899999834778048998------------4478840245557483122 Q gi|254781049|r 87 LGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA------------STQGGMDIEEVAKDYPQKI 154 (398) Q Consensus 87 lg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~------------S~~GGvdIE~va~~~p~~I 154 (398) +.... .|..-..|+|||++. +.|+=+-...|-..-.|+... -.-|||-- T Consensus 175 ~~~~~-------~g~~g~~vvIEE~L~-G~E~S~~a~~dG~~~~~lp~~qDhKR~~dgD~GPNTGGMGa----------- 235 (431) T 3mjf_A 175 LAGNA-------FGDAGHRIVVEEFLD-GEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGA----------- 235 (431) T ss_dssp HTTHH-------HHCCCCCEEEEECCC-SEEEEEEEEEESSCEEECCCBEECCEEETTTEEEECSCSEE----------- T ss_pred HHHCC-------CCCCCCEEEEECCCC-CEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----------- T ss_conf 75113-------456455576212067-53899999977995995323001522247999998898864----------- Q ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCEEEECCCCCEEEEEEEEEECCC Q ss_conf 033214445789578887887519888998859999999989999559751---02326799059967994001321573 Q gi|254781049|r 155 FKLLIDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSL---LEINPLIIMKNGRLRVLDSKISFDDN 231 (398) Q Consensus 155 ~~~~id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~l---iEINPLvvt~dg~vvAlDAKi~iDDn 231 (398) +.|.-.+++... ......++....+.+.+..... +=+. |.+|++|.+.. |.=| T Consensus 236 ----~sp~p~~~~~l~-------------~~i~~~ii~p~~~~l~~~g~~y~GvLy~g-lMlt~~G~pkV------iEyN 291 (431) T 3mjf_A 236 ----YSPAPVVTDDVH-------------QRVMDQVIWPTVRGMAAEGNIYTGFLYAG-LMISADGQPKV------IEFN 291 (431) T ss_dssp ----EESCTTSCHHHH-------------HHHHHHTHHHHHHHHHHTTCCCEEEEEEE-EEECTTSCEEE------EEEC T ss_pred ----CCCCCCCCHHHH-------------HHHHHHHCCHHHHHHHHCCCCCCCEEEEE-EEECCCCCEEE------EEEE T ss_conf ----688987898999-------------99987500117778863599521235311-58836898789------9987 Q ss_pred HHHHHHHHHHHHCCCCCCHHHH Q ss_conf 5564102786310001562224 Q gi|254781049|r 232 ALYRHLDIQELRDVSEEDSREI 253 (398) Q Consensus 232 A~fR~~~~~~~~d~~~~~~~E~ 253 (398) +.|--|+...+....+.|..|+ T Consensus 292 ~RfGDPE~q~ll~~l~~dl~e~ 313 (431) T 3mjf_A 292 CRFGDPETQPIMLRMRSDLVEL 313 (431) T ss_dssp GGGSTTTHHHHHHHBCSCHHHH T ss_pred EECCCCCHHHHHHHCCCCHHHH T ss_conf 3037840445565316748999 No 14 >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} Probab=99.02 E-value=4.1e-09 Score=78.31 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=101.1 Q ss_pred HHHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 99999999868988881--5747999999999872998699971213687656565567777777079958999999999 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398) ..+|++++++|||+|++ ..+++.+|+.++++++|||+ |||+---.||| |++++.+.+|+.++. T Consensus 121 ~~~k~~~~~~Gvpv~~~~~~~~~~~ee~~~~a~~iGyPv-iVKps~ggGGr--------------G~~iV~~~~el~~~~ 185 (446) T 3ouz_A 121 SKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPV-ILKAAAGGGGR--------------GMRVVENEKDLEKAY 185 (446) T ss_dssp HHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSE-EEEETTCCTTC--------------SEEEECSGGGHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEEECCCCCCC--------------CEEEECCHHHHHHHH T ss_conf 989999998699660476756799999999999749989-99978889988--------------158975816769999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCC Q ss_conf 98618765442122222443301103455565058999998347780489984478840245557483122033214445 Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLI 163 (398) Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~ 163 (398) ...+..-. ....-..|+||++++..+|+=+.+..|.... .+.++ --+. ++...+++.+. .-|.. T Consensus 186 ~~a~~ea~-------~~~~~~~vlvEk~l~g~reiEVqvl~D~~g~-~i~~~----~r~~-s~~~~~~~~ie---~~P~~ 249 (446) T 3ouz_A 186 WSAESEAM-------TAFGDGTMYMEKYIQNPRHIEVQVIGDSFGN-VIHVG----ERDC-SMQRRHQKLIE---ESPAI 249 (446) T ss_dssp HHHHHHHH-------HHHSCCCEEEEECCSSCEEEEEEEEECTTSC-EEEEE----EEEE-EEEETTEEEEE---EESCT T ss_pred HHHHHHHH-------HHCCCCCEEEEEECCCCEEEEEEEEECCCCC-EEEEE----EECC-CCCCCCCCEEE---EECCC T ss_conf 99999999-------7389987899982599889999999769999-99985----4506-66777774799---93898 Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE Q ss_conf 78957888788751988899885999999998999955975102326799059967994 Q gi|254781049|r 164 GVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVL 222 (398) Q Consensus 164 gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAl 222 (398) . ++.+..+++.+...++.+..--..+.-+|. +++++|+++.+ T Consensus 250 ~--------------l~~~~~~~l~~~a~~~~~alg~~g~~~vef---~v~~~g~~y~i 291 (446) T 3ouz_A 250 L--------------LDEKTRTRLHETAIKAAKAIGYEGAGTFEF---LVDKNLDFYFI 291 (446) T ss_dssp T--------------SCHHHHHHHHHHHHHHHHHTTCCEEEEEEE---EECTTCCEEEE T ss_pred C--------------CCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---EECCCCCEEEE T ss_conf 7--------------999999999999999999709857637999---82378856899 No 15 >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=98.97 E-value=1.8e-08 Score=74.05 Aligned_cols=107 Identities=19% Similarity=0.361 Sum_probs=80.5 Q ss_pred HHHHHHHHHHCCCCCCCCE--EECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 7999999998689888815--74799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGV--VISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~--~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -..+|+++.+.|+|++++. .+++.+|+.+++++||||+ +||+-- ||-|| |++++.+++|+.++ T Consensus 115 K~~ar~~a~~~GvP~~pg~~~~~~s~~ea~~~a~~iGyPv-iiKa~~--ggGGr------------Gmriv~~~~el~~~ 179 (451) T 1ulz_A 115 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPV-LLKATA--GGGGR------------GIRICRNEEELVKN 179 (451) T ss_dssp HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSE-EEEECS--SSSCC------------SCEEESSHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECC--CCCCC------------CEEEECCHHHHHHH T ss_conf 9999999998699828997766699999999998649979-999876--89988------------63786898999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEE Q ss_conf 9986187654421222224433011034555650589999983477804899 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFI 134 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii 134 (398) +.+...-- + .-..-..|+||+.+...+++=+-+..|.... ++-+ T Consensus 180 ~~~a~~ea----~---~~fg~~~v~iEk~i~~~rhiEvqvl~D~~Gn-vi~l 223 (451) T 1ulz_A 180 YEQASREA----E---KAFGRGDLLLEKFIENPKHIEYQVLGDKHGN-VIHL 223 (451) T ss_dssp HHHHHHHH----H---HTTSCCCEEEEECCCSCEEEEEEEEECTTSC-EEEE T ss_pred HHHHHHHH----H---HHCCCCCEEEEEECCCCEEEEEEEEEECCCC-EEEE T ss_conf 99999999----9---8569985899982377479899999968998-8997 No 16 >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Probab=98.91 E-value=1.3e-07 Score=68.50 Aligned_cols=182 Identities=12% Similarity=0.131 Sum_probs=105.0 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 7999999998689888815747999----999999872998699971213687656565567777777079958999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVH----AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~----ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) =+.+|++|+++|||+|++.+....+ .......++++|+ +||+- .. +..-||..+++.++.. T Consensus 136 K~~tk~~l~~~gIptp~~~~~~~~~~~~~~~~~~~~~l~~P~-iVKP~-~~-------------GsS~GI~~v~~~~el~ 200 (377) T 1ehi_A 136 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIV-FVKAA-NQ-------------GSSVGISRVTNAEEYT 200 (377) T ss_dssp HHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCE-EEEES-SC-------------CTTTTEEEECSHHHHH T ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCE-EECCC-CC-------------CCCCCCEECCCHHHHH T ss_conf 557777678601245512311511010445899988708968-97478-88-------------7764633147899999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECC Q ss_conf 99998618765442122222443301103455565058999998347780489984478840245557483122033214 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLID 160 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id 160 (398) .+....+... +.++|||.++..+|+.+++.-+... ++..... ..+... . T Consensus 201 ~~~~~~~~~~-------------~~vlvEefi~G~rE~tv~v~~~~~~--~~~~~~~---~~~~~~-------------~ 249 (377) T 1ehi_A 201 EALSDSFQYD-------------YKVLIEEAVNGARELEVGVIGNDQP--LVSEIGA---HTVPNQ-------------G 249 (377) T ss_dssp HHHHHHTTTC-------------SCEEEEECCCCSCEEEEEEEESSSC--EEEEEEE---EECTTS-------------S T ss_pred HHHHHHHHHH-------------HHCEEEEEECCCEEEEEEEECCCCC--CEEEEEE---EEECCC-------------C T ss_conf 9999987640-------------1000455423867999998458887--3356302---630332-------------5 Q ss_pred CCCCCCHHHHHHHH-------HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEE--EEECCC Q ss_conf 44578957888788-------751988899885999999998999955975102326799059967994001--321573 Q gi|254781049|r 161 PLIGVTSEDVASLC-------DMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSK--ISFDDN 231 (398) Q Consensus 161 ~~~gl~~~~~~~l~-------~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAK--i~iDDn 231 (398) ...++.++...... .-..++....+.+.++..++|+++--.+..-+++ .++++|+++.++.- =.+-.+ T Consensus 250 ~~~~~~dy~~Ky~~~~~~~~~~pa~l~~~~~~~i~~~A~~a~~~Lg~~g~aRiDf---~ld~~g~~y~lEvNt~PGlt~~ 326 (377) T 1ehi_A 250 SGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF---LLDENNVPYLGEPNTLPGFTNM 326 (377) T ss_dssp SSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE---EECTTCCEEEEEEESSCCCSTT T ss_pred CCCCEEECHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEECCCCCCCCC T ss_conf 7775452100036644410025765448999999999999999969994699999---9968997899985599998840 Q ss_pred HHHH Q ss_conf 5564 Q gi|254781049|r 232 ALYR 235 (398) Q Consensus 232 A~fR 235 (398) ++|- T Consensus 327 S~~p 330 (377) T 1ehi_A 327 SLFK 330 (377) T ss_dssp CGGG T ss_pred CHHH T ss_conf 3899 No 17 >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} Probab=98.91 E-value=1.9e-07 Score=67.27 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=101.4 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 79999999986898888157479999----99999872998699971213687656565567777777079958999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHA----AESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~e----a~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) -+.+|++|+++|||||++......+. ....+..+++|+ |||+- .|| ..-||..+++.++.. T Consensus 160 K~~~K~il~~~gIptp~~~~~~~~~~~~~~~~~~~~~lg~P~-iVKP~--~~G------------sS~Gv~~v~~~~el~ 224 (386) T 3e5n_A 160 KDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPL-FVKPA--NQG------------SSVGVSQVRTADAFA 224 (386) T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHCSSE-EEEES--BSC------------SSTTCEEECSGGGHH T ss_pred CCCCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCE-EECCC--CCC------------CCCCCEEECCHHHHH T ss_conf 661088997638987531110022203567888888618972-43457--876------------688852650699999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEE-C--CCCCC-HHHHHHHCHHHHEE Q ss_conf 99998618765442122222443301103455565058999998347780489984-4--78840-24555748312203 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAS-T--QGGMD-IEEVAKDYPQKIFK 156 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S-~--~GGvd-IE~va~~~p~~I~~ 156 (398) ++....+... ..+|||++++ ++|+.+++..++.. +.+... . ..+.. -+. +.... -.. T Consensus 225 ~~~~~a~~~~-------------~~vlvEefI~-GrEitV~v~g~~~~--~~~~~~~~i~~~~~~~~~~--k~~~~-~~~ 285 (386) T 3e5n_A 225 AALALALAYD-------------HKVLVEAAVA-GREIECAVLGNAVP--HASVCGEVVVHDAFYSYAT--KYISE-HGA 285 (386) T ss_dssp HHHHHHTTTC-------------SEEEEEECCC-SEEEEEEEECSSSC--EEEEEEEECC-------------------- T ss_pred HHHHHHHCCC-------------HHHCCCCCCC-EEEEEEEECCCCCC--CCCCCCEEECCCCCCCHHH--HHHHC-CCC T ss_conf 9998621234-------------0001233112-04999975354335--4344443760576531567--64303-773 Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEE Q ss_conf 321444578957888788751988899885999999998999955975102326799059967994001 Q gi|254781049|r 157 LLIDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSK 225 (398) Q Consensus 157 ~~id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAK 225 (398) ....| ..++.+....+.++..+.|+++--.+..-+|. .++++|+++.++.- T Consensus 286 ~~~~p---------------a~~~~~~~~~i~~~A~ka~~aLg~~g~~RiDf---~ld~dG~~y~lEvN 336 (386) T 3e5n_A 286 EIVIP---------------ADIDAQTQQRIQQIAVQAYQALGCAGMARVDV---FLCADGRIVINEVN 336 (386) T ss_dssp CEESS---------------CSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEE---EECTTCCEEEEEEE T ss_pred CCCCC---------------CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEEE T ss_conf 10266---------------43338999999999999999849982699999---99379958999810 No 18 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=98.90 E-value=1.3e-08 Score=75.00 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=74.6 Q ss_pred HHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHC Q ss_conf 99999986898888157479999999998729986999712136876565655677777770799589999999999861 Q gi|254781049|r 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREIL 87 (398) Q Consensus 8 aK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~il 87 (398) .|++|+++|||+|++..++|.+|+..+++++|||+ |+|+--.+|| -||.++.+.+|+.++.++.. T Consensus 125 ~~~ll~~~gIpt~~~~~v~s~~e~~~~~~~ig~Pv-VvKp~~~~gg--------------~Gv~~v~~~~el~~a~~~a~ 189 (433) T 2dwc_A 125 RETLVKEAKVPTSRYMYATTLDELYEACEKIGYPC-HTKAIMSSSG--------------KGSYFVKGPEDIPKAWEEAK 189 (433) T ss_dssp HHHHHHTSCCCCCCEEEESSHHHHHHHHHHHCSSE-EEEECCC--------------------EEECSGGGHHHHHHC-- T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEEEEEECCC--------------CCCEEECCHHHHHHHHHHHH T ss_conf 99999866999578521289999999999838840-3211352369--------------86379779899999999999 Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCC Q ss_conf 876544212222244330110345556505899999834778 Q gi|254781049|r 88 GSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSG 129 (398) Q Consensus 88 g~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~ 129 (398) .... +. ...+++|+.++...|...-+..+.... T Consensus 190 ~~~~--------~~-~~~v~~e~~i~~~~e~~~~~~~~~~~~ 222 (433) T 2dwc_A 190 TKAR--------GS-AEKIIVEEHIDFDVEVTELAVRHFDEN 222 (433) T ss_dssp ----------------CCEEEEECCCCSEEEEECCEEEECTT T ss_pred HHCC--------CC-CCCCCCEEECCCCCCEEEEEEEECCCC T ss_conf 7512--------46-676431001145641379999946997 No 19 >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Probab=98.90 E-value=4.8e-08 Score=71.22 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=78.4 Q ss_pred HHHHHHHHHCCCCCCCC--------------------------EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC Q ss_conf 99999999868988881--------------------------5747999999999872998699971213687656565 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG--------------------------VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRF 59 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g--------------------------~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~ 59 (398) .++|+++.+.|+|+.+| ..++|.+||...+++||||+ +||+-- ||-| T Consensus 175 ~~ar~la~~~GVPviPgs~~~i~~~~~~~~~~~~~~~~~~~~~g~~~s~eea~~~A~~IGyPV-ivKps~--ggGG---- 247 (554) T 1w96_A 175 ISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPV-MIKASE--GGGG---- 247 (554) T ss_dssp HHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSE-EEEETT--CCTT---- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCE-EEEECC--CCCC---- T ss_conf 999999998399947887766441011221011223210000233489999999997569878-997235--6887---- Q ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEE Q ss_conf 567777777079958999999999986187654421222224433011034555650589999983477804899 Q gi|254781049|r 60 KELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFI 134 (398) Q Consensus 60 ~~~hk~~~GGV~l~~s~~ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii 134 (398) -|++++.+.+|+..+.++-... . .-..+|||+.+...+|+=+-+..|.... .+.+ T Consensus 248 --------rGm~iv~~~~el~~a~~~a~~~------~-----~~~~vliEk~l~~~rhiEVqvi~D~~G~-~v~l 302 (554) T 1w96_A 248 --------KGIRQVEREEDFIALYHQAANE------I-----PGSPIFIMKLAGRARHLEVQLLADQYGT-NISL 302 (554) T ss_dssp --------TTEEEECSHHHHHHHHHHHHHH------S-----TTCCEEEEECCCSCEEEEEEEEECTTSC-EEEE T ss_pred --------CEEEEECCHHHHHHHHHHHHHH------C-----CCCCEEEEEECHHHEEEEEEEEEECCCC-EEEE T ss_conf --------3679972747766667888862------6-----8986799982311111124789826998-8999 No 20 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=98.89 E-value=1.7e-07 Score=67.68 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=102.7 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHH-------HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHH Q ss_conf 79999999986898888157479999-------99999872998699971213687656565567777777079958999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHA-------AESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLK 77 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~e-------a~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ 77 (398) =+..|++|+++|||+|++.+.+..+. ....++.++||+ |||+- . ||- .-||..+++.+ T Consensus 97 K~~~K~~~~~~gi~tp~~~~~~~~~~~~~~~~~~~~~~~~l~~P~-vvKP~-~-~g~------------s~Gi~~~~~~~ 161 (306) T 1iow_A 97 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV-IVKPS-R-EGS------------SVGMSKVVAEN 161 (306) T ss_dssp HHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHHHHHTTCSSE-EEEET-T-CCT------------TTTCEEESSGG T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCE-EEEEC-C-CCC------------CCCCCCCCCHH T ss_conf 187899877426888985777301102230477888876129988-99828-9-888------------88851258999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEE Q ss_conf 99999998618765442122222443301103455565058999998347780489984478840245557483122033 Q gi|254781049|r 78 SVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKL 157 (398) Q Consensus 78 ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~ 157 (398) |+.++.+.++... +.+|||+.++ ++|+.+++..+.... ++.+....+=.+.+. ..... ... T Consensus 162 el~~~~~~~~~~~-------------~~~lvEefi~-G~E~~v~v~~~~~~~-~~~i~~~~~~~~~~~--~~~~~--~~~ 222 (306) T 1iow_A 162 ALQDALRLAFQHD-------------EEVLIEKWLS-GPEFTVAILGEEILP-SIRIQPSGTFYDYEA--KFLSD--ETQ 222 (306) T ss_dssp GHHHHHHHHTTTC-------------SEEEEEECCC-CCEEEEEEETTEECC-CEEEECSSSSSCHHH--HHTCS--CCE T ss_pred HHHHHHHHHHHCC-------------HHHHHHHCCC-CCEEEEEEECCCCCC-EEEEEECCCCCCCCC--CCCCC--CCC T ss_conf 9999999866348-------------3566764567-977999985576787-699963676432000--10134--334 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE Q ss_conf 2144457895788878875198889988599999999899995597510232679905996799400 Q gi|254781049|r 158 LIDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398) Q Consensus 158 ~id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398) .+.|. .++......+.++..+.++++--.+..-+| +.++++|+++.++. T Consensus 223 ~~~~~---------------~~~~~~~~~i~~~a~k~~~~lg~~g~~riD---f~~d~~g~~~~lEv 271 (306) T 1iow_A 223 YFCPA---------------GLEASQEANLQALVLKAWTTLGCKGWGRID---VMLDSDGQFYLLEA 271 (306) T ss_dssp EESSC---------------CCCHHHHHHHHHHHHHHHHHHTCCSEEEEE---EEECTTSCEEEEEE T ss_pred CCCCC---------------CCCHHHHHHHHHHHHHHHHHHCCCCEEEEE---EEEECCCCEEEEEE T ss_conf 57777---------------887677666899999999994996479999---99958998999986 No 21 >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} Probab=98.85 E-value=2.9e-07 Score=66.11 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=101.7 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 7999999998689888815747999----999999872998699971213687656565567777777079958999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVH----AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~----ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) -+..|++|+++|||+|++.+.+..+ ........+++|+ ++|+ ...| ..-||..+++.+++. T Consensus 141 K~~~k~~l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~~~~P~-ivKP-~~~G-------------sS~Gv~~v~~~~el~ 205 (364) T 3i12_A 141 KDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPL-FVKP-ANQG-------------SSVGVSKVANEAQYQ 205 (364) T ss_dssp HHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSE-EEEE-TTCC-------------TTTTCEEESSHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EECC-CCCC-------------CCCCCEEECCHHHHH T ss_conf 037799999859986326874033113455788777617977-8877-6678-------------888752422177799 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEE--CCCCCCHHHHHHHCHHHHEEEE Q ss_conf 99998618765442122222443301103455565058999998347780489984--4788402455574831220332 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAS--TQGGMDIEEVAKDYPQKIFKLL 158 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S--~~GGvdIE~va~~~p~~I~~~~ 158 (398) ++....+.. -+.+||||.++ ++|+-+++..+.... .+.... ...+..... .... ....... T Consensus 206 ~~~~~~~~~-------------~~~vlvEefI~-G~E~tV~v~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 268 (364) T 3i12_A 206 QAVALAFEF-------------DHKVVVEQGIK-GREIECAVLGNDNPQ-ASTCGEIVLNSEFYAYD-TKYI-DDNGAQV 268 (364) T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSSCE-EEEEEEEECCTTCC--T-TTTS-GGGGCEE T ss_pred HHHHHHHHH-------------HHHCCHHCEEE-EEEEEEEECCCCCCE-EEEEEEECCCCCCCCCC-HHCC-CCCCCCC T ss_conf 999998874-------------01001103572-279998514544653-53114532466654400-1103-6665334 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE Q ss_conf 144457895788878875198889988599999999899995597510232679905996799400 Q gi|254781049|r 159 IDPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398) Q Consensus 159 id~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398) +.| ..++.+..+.+.++..+.|+.+--.+..-++ +.++++|+++.++. T Consensus 269 ~~p---------------~~l~~e~~~~i~~~A~~a~~~Lg~~g~~RvD---f~~d~~g~~yvlEv 316 (364) T 3i12_A 269 VVP---------------AQIPSEVNDKIRAIAIQAYQTLGCAGMARVD---VFLTADNEVVINEI 316 (364) T ss_dssp ESS---------------CSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE---EEECTTCCEEEEEE T ss_pred CCC---------------CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EEEECCCCEEEEEE T ss_conf 566---------------1004999999999999999971998469888---99918996899986 No 22 >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A Probab=98.84 E-value=1.1e-07 Score=68.90 Aligned_cols=103 Identities=19% Similarity=0.265 Sum_probs=77.9 Q ss_pred HHHHHHHHHCCCCCCCC-----------------------------EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCC Q ss_conf 99999999868988881-----------------------------5747999999999872998699971213687656 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG-----------------------------VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGK 56 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g-----------------------------~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGK 56 (398) .++|+++.+.|||+.+| ..++|.+||..++++||||+ +||+-- ||-|+ T Consensus 166 ~~ar~~a~~~gVPvvPgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eEa~~~A~~IGyPv-~iKps~--ggGGr 242 (540) T 3glk_A 166 IASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPL-MIKASE--GGGGK 242 (540) T ss_dssp HHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSE-EEEETT--CC--- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECC--CCCCC T ss_conf 878999998389947988876541100012332210134322233343489999999998559988-999657--79974 Q ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 5655677777770799589999999999861876544212222244330110345556505899999834778048998 Q gi|254781049|r 57 GRFKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 57 a~~~~~hk~~~GGV~l~~s~~ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) |++++.+.+++.++.++.+.. . .-..+++|+.++..+|+=+-+..|.... .+.++ T Consensus 243 ------------Gm~iv~~~~el~~a~~~A~~~------~-----~~~~v~vEk~i~~~rhiEvqvl~D~~Gn-~i~l~ 297 (540) T 3glk_A 243 ------------GIRKAESAEDFPILFRQVQSE------I-----PGSPIFLMKLAQHARHLEVQILADQYGN-AVSLF 297 (540) T ss_dssp -------------EEEECSTTTHHHHHHHHHHH------S-----TTCCEEEEECCSSEEEEEEEEEECTTSC-EEEEE T ss_pred ------------EEEEECCHHHHHHHHHHHHHC------C-----CCCCEEEEEEECCCCCCEEEEEEECCCC-EEEEE T ss_conf ------------348827999999989999841------8-----8885799996427754247999975898-89997 No 23 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=98.82 E-value=4.4e-08 Score=71.47 Aligned_cols=108 Identities=27% Similarity=0.374 Sum_probs=80.2 Q ss_pred HHHHHHHHHHCCCCCCCCE--EECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 7999999998689888815--74799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGV--VISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~--~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -..+|+++.+.|+|++++. .+++.+|+.+++++||||+ +||+-- ||-|| |++++.+.+|+.++ T Consensus 115 K~~ar~~a~~~gvPv~pg~~~~~~~~~ea~~~a~~IGyPv-iIKas~--ggGGr------------GmriV~~~~el~~a 179 (451) T 2vpq_A 115 KDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPV-IIKATA--GGGGK------------GIRVARDEKELETG 179 (451) T ss_dssp HHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSE-EEEETT--CCTTC------------SEEEESSHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECC--CCCCC------------CCEEECCCHHHHHH T ss_conf 6899999998699918997777799999999998739969-999887--89988------------62687582456999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 99861876544212222244330110345556505899999834778048998 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) .+.-.+.- .....-..|+||+.+...+|+=+-+..|... ..+.++ T Consensus 180 ~~~a~~ea-------~~~f~~~~v~iE~~i~~~rhiEvqvl~D~~G-~~i~l~ 224 (451) T 2vpq_A 180 FRMTEQEA-------QTAFGNGGLYMEKFIENFRHIEIQIVGDSYG-NVIHLG 224 (451) T ss_dssp HHHHHHHH-------HHHHSCCCEEEEECCCSEEEEEEEEEECTTS-CEEEEE T ss_pred HHHHHHHH-------HHCCCCCCEEEEEECCCCEEEEEEEEEECCC-CEEEEE T ss_conf 99999999-------8547998389997359977999999980899-999994 No 24 >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} Probab=98.81 E-value=2e-08 Score=73.79 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=72.6 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 799999999868988881574799999999-9872998699971213687656565567777777079958999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESA-IKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~-a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398) =+..|++|+++|||+|++.+.++.++.... ...++||+ |+|+-- ||-| =||.++.|.+|+.++. T Consensus 150 K~~~k~~l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~P~-vvKP~~--~gsS------------~GV~~v~~~~el~~ai 214 (367) T 2pvp_A 150 KYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPF-IVKPSN--AGSS------------LGVNVVKEEKELIYAL 214 (367) T ss_dssp HHHHHHHHHHHTCBCCCCEEECTTTGGGHHHHCCSCSCE-EEEESS--CCTT------------TTCEEESSTTSHHHHH T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-EEEECC--CCCC------------CCCEEEECCHHHHHHH T ss_conf 599888898729995631134444478899987659988-999566--4578------------9878996133179999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC Q ss_conf 98618765442122222443301103455565058999998347 Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398) Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398) ++.+... +.+||||.++..+|+-+++..+.. T Consensus 215 ~~~~~~~-------------~~vlVEe~I~G~~E~~v~v~~~~~ 245 (367) T 2pvp_A 215 DSAFEYS-------------KEVLIEPFIQGVKEYNLAGCKIKK 245 (367) T ss_dssp HHHTTTC-------------SCEEEEECCTTCEEEEEEEEEETT T ss_pred HHHHHHC-------------CCEEEEEECCCCEEEEEEEECCCC T ss_conf 9987614-------------413578862797874787742689 No 25 >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A* Probab=98.80 E-value=5.5e-07 Score=64.28 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=69.9 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHH-------HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHH Q ss_conf 79999999986898888157479999-------99999872998699971213687656565567777777079958999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHA-------AESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLK 77 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~e-------a~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ 77 (398) =+.+|++|+++|||+|++.+....+. +..+...++||+ |||+--..|+ =||.++.+.+ T Consensus 130 K~~~k~~l~~~gIptp~~~~~~~~~~~~~~~~~l~~~~~~~~~Pv-vvKP~~~g~S--------------~Gv~~v~~~~ 194 (364) T 2i87_A 130 KLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPV-FVKPANLGSS--------------VGISKCNNEA 194 (364) T ss_dssp HHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCSSE-EEEESSCSSC--------------TTCEEESSHH T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCC--------------CCCEEECCHH T ss_conf 899999999869986986676134222005889999997628986-9984677778--------------7616844789 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEEC Q ss_conf 9999999861876544212222244330110345556505899999834 Q gi|254781049|r 78 SVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDR 126 (398) Q Consensus 78 ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr 126 (398) |+.++.++.+... +.++||+.++ .+|+.+++..+. T Consensus 195 el~~~i~~~~~~~-------------~~~lvEe~i~-g~E~~~~v~~~~ 229 (364) T 2i87_A 195 ELKEGIKEAFQFD-------------RKLVIEQGVN-AREIEVAVLGND 229 (364) T ss_dssp HHHHHHHHHHTTC-------------SEEEEEECCC-CEEEEEEEEESS T ss_pred HHHHHHHHHHHCC-------------HHHHHHCCCC-CEEEEEEEEECC T ss_conf 9999999997508-------------4544430427-679999851135 No 26 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=98.77 E-value=2e-07 Score=67.15 Aligned_cols=324 Identities=13% Similarity=0.114 Sum_probs=170.5 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) ...++++.+.|||+|++..++|.+||.+.++++|||+ .+|+----||| |.+++.|.+|+.+..++ T Consensus 676 ~~f~~ll~~lgi~~p~~~~~~s~eea~~~a~~iGyPV-lvRpSyvlGG~--------------~M~iv~~~~eL~~~l~~ 740 (1073) T 1a9x_A 676 ERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPL-VVRASYVLGGR--------------AMEIVYDEADLRRYFQT 740 (1073) T ss_dssp HHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSE-EEEC---------------------CEEEECSHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCCCC--------------CEEEEECHHHHHHHHHH T ss_conf 9999999972888888754487889999998649976-97413356677--------------42799648999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCCC Q ss_conf 61876544212222244330110345556505899999834778048998447884024555748312203321444578 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGV 165 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~gl 165 (398) -... . + -..|+|++++...+|+=+=+..|.. ...+.+..+ +||...-++.|..... |...+ T Consensus 741 a~~~------s-~----~~~vlIekfl~~~~EiEvd~i~Dg~--~v~i~~i~E---hIe~aGvHsgDs~~v~---P~~~L 801 (1073) T 1a9x_A 741 AVSV------S-N----DAPVLLDHFLDDAVEVDVDAICDGE--MVLIGGIME---HIEQAGVHSGDSACSL---PAYTL 801 (1073) T ss_dssp CC-------------------EEEBCCTTCEEEEEEEEECSS--CEEEEEEEE---ESSCTTSCGGGCCEEE---SCSSC T ss_pred HHHH------C-C----CCCEEEEEECCCCEEEEEEEECCCC--EEEEEECCC---CCCCCCCCCCCCCCCC---CCCCC T ss_conf 9964------9-9----9988887615786577766212687--589940401---3234776324534507---98336 Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCHHHH----H----- Q ss_conf 9578887887519888998859999999989999559751023267990599679940013215735564----1----- Q gi|254781049|r 166 TSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYR----H----- 236 (398) Q Consensus 166 ~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDAKi~iDDnA~fR----~----- 236 (398) ++ +..+.+.+...++.+.+.-..+ +|==.+.+|++++.+-+.-...-+.-|- - T Consensus 802 s~--------------~~~~~i~~~a~kia~~l~i~G~----~niQF~vkd~~~yviE~NpRasrt~pf~sk~tG~~lv~ 863 (1073) T 1a9x_A 802 SQ--------------EIQDVMRQQVQKLAFELQVRGL----MNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAK 863 (1073) T ss_dssp CH--------------HHHHHHHHHHHHHHHHTTCCEE----EEEEEEECSSCEEEEEEECSCCTTHHHHHHHHSCCHHH T ss_pred CH--------------HHHHHHHHHHHHHHHHCCCCCC----EEEEEEEECCEEEEEECCCCCCCCCHHHHHHHCCCHHH T ss_conf 99--------------9999999999999986462342----27999998999999974242012208999884987999 Q ss_pred --------HHHHHHHCCCCCCHHHHHHHHCCCCEEECC-------------CCEEEEECCCHHHHHHHHHHHHCCCCC-- Q ss_conf --------027863100015622245775398644228-------------817999555036899999999658996-- Q gi|254781049|r 237 --------LDIQELRDVSEEDSREIEAKQHNLSYIALD-------------GNIGCMVNGAGLAMATMDIIKLYGGAP-- 293 (398) Q Consensus 237 --------~~~~~~~d~~~~~~~E~~A~~~~l~yv~Ld-------------G~Ig~~vnGaGlamatmD~i~~~Gg~p-- 293 (398) +.+.++....+..+.-.--+..=++|-+|. |.+.|+ |--+..|..-.....|.+. T Consensus 864 ~a~~i~lG~~L~~~~~~~~~~~~~~~VK~pvfsf~k~~g~d~~LgpeMkSTGEvmg~--g~~~~eA~~Ka~~a~~~~ip~ 941 (1073) T 1a9x_A 864 VAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGV--GRTFAEAFAKAQLGSNSTMKK 941 (1073) T ss_dssp HHHHHHTTCCHHHHTCCSCCCCSSEEEEEEECGGGGCTTSCCCCCSSCCCCEEEEEE--ESSHHHHHHHHHHHTTCCCCS T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCCEECCCCEEE--CCCHHHHHHHHHHHCCCCCCC T ss_conf 999998499610048886778980899900377110589989889880023455674--399999999999974998798 Q ss_pred -CEEEECCCCCCHHHHHHHHHHH----------------HCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf -2488427888989999999998----------------6199865899963-586132899999999999972999879 Q gi|254781049|r 294 -ANFLDVGGGADQDKVAAAFKII----------------TSDSSVKGILINI-FGGIMRCDVLVKGILSAVKEVKINIPL 355 (398) Q Consensus 294 -ANFlD~gG~a~~e~~~~a~~~i----------------l~~~~vk~iliNi-fGGI~~cd~vA~gii~a~~~~~~~~pi 355 (398) .+.+=.....+.+++....+.+ |.+.++++-.||- .-|- .-|++.+++.+++ + T Consensus 942 ~g~v~isv~d~dK~~~~~~a~~l~~lGf~i~aT~GTa~~L~~~gi~~~~v~kv~e~~-------p~i~d~i~~~~i~--l 1012 (1073) T 1a9x_A 942 HGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGR-------PHIQDRIKNGEYT--Y 1012 (1073) T ss_dssp SSEEEEECCGGGGTTHHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCS-------SBHHHHHHHTCCS--E T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEECCCCCCC-------CCHHHHHHCCCEE--E T ss_conf 887999962243899999999999869989985699999997699159962668999-------3599999769857--9 Q ss_pred EEECCCCC-H-HHHHH---HHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 99748985-8-99999---99976995899499899999999985 Q gi|254781049|r 356 VMRLEGAN-V-DIGNR---LIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 356 vvRl~Gtn-~-~~g~~---il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+-....+ . +.|.+ .--+.++|+++ +++ +++..++.. T Consensus 1013 VINt~~~~~~~~d~~~iRr~Av~~~ip~~T--~~~-~a~~~~~al 1054 (1073) T 1a9x_A 1013 IINTTSGRRAIEDSRVIRRSALQYKVHYDT--TLN-GGFATAMAL 1054 (1073) T ss_dssp EEECCCSHHHHHHTHHHHHHHHHTTCEEES--SHH-HHHHHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCEEE--CHH-HHHHHHHHH T ss_conf 998999987677649999999972999894--799-999999999 No 27 >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Probab=98.77 E-value=2.6e-07 Score=66.37 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=76.9 Q ss_pred HHHHHHHHHCCCCCCCC-----------------------------EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCC Q ss_conf 99999999868988881-----------------------------5747999999999872998699971213687656 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG-----------------------------VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGK 56 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g-----------------------------~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGK 56 (398) .++|+++.+.|||+.+| ..+++.+||..++++||||+ +||+-- ||-|+ T Consensus 182 ~~ar~la~~agVPvvPgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~s~eEa~~~A~~IGyPV-mVKps~--ggGGr 258 (587) T 3jrx_A 182 IASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPL-MIKASE--GGGGK 258 (587) T ss_dssp HHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSE-EEEETT--CCSSS T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECC--CCCCC T ss_conf 999999998089947988876652111013443210134322233343489999999998549988-999667--78984 Q ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEE Q ss_conf 565567777777079958999999999986187654421222224433011034555650589999983477804899 Q gi|254781049|r 57 GRFKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFI 134 (398) Q Consensus 57 a~~~~~hk~~~GGV~l~~s~~ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii 134 (398) |++++.+.+|+.++.++-... ..-..+++|+.++..+|+-+-+..|.... .+.+ T Consensus 259 ------------Gmriv~~~eel~~a~~~A~~~-----------~~~~~vliEk~i~~~rhiEVqvl~D~~G~-~i~l 312 (587) T 3jrx_A 259 ------------GIRKAESAEDFPILFRQVQSE-----------IPGSPIFLMKLAQHARHLEVQILADQYGN-AVSL 312 (587) T ss_dssp ------------SEEEECSTTTHHHHHHHHHHH-----------STTCCEEEEECCCSCEEEEEEEEECSSSC-EEEE T ss_pred ------------EEEEECCHHHHHHHHHHHHHC-----------CCCCCEEEEEEEHHHHHCCEEEEEECCCC-EEEE T ss_conf ------------337836858999999999841-----------88885699984012210202578725894-8999 No 28 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=98.76 E-value=2.3e-08 Score=73.39 Aligned_cols=111 Identities=18% Similarity=0.304 Sum_probs=81.9 Q ss_pred HHHHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 799999999868988881--574799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -..+|+++.+.|||++++ ..+++.+++.+++++||||+ +||+ -.||-|| |.+++++.+|+.+. T Consensus 116 K~~~k~~~~~~gvp~~p~~~~~~~~~~~~~~~~~~iG~Pv-~lKa--~~gggGk------------G~~~v~~~~~l~~~ 180 (681) T 3n6r_A 116 KITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPV-MIKA--SAGGGGK------------GMRIAWNDQEAREG 180 (681) T ss_dssp HHHHHHHHHTTTCCCCCC-------------------------------------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEE--CCCCCCC------------CCEEECCCHHHHHH T ss_conf 9999999998698929897877799999999987649978-9996--4368857------------22798370352455 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECC Q ss_conf 99861876544212222244330110345556505899999834778048998447 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQ 138 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~ 138 (398) +....+--. .. ..-..+++|++++..+|+-+-+..|.. |..+.++... T Consensus 181 ~~~~~~ea~---~~----~~~~~~~iE~~i~~~rhievqv~~d~~-G~~v~~~~r~ 228 (681) T 3n6r_A 181 FQSSKNEAA---NS----FGDDRIFIEKFVTQPRHIEIQVLCDSH-GNGIYLGERE 228 (681) T ss_dssp -----------------------------CCSCEEEEEEEECCSS-SCCEEEEEEE T ss_pred HHHHHHHHH---HH----CCCCCEEEEEECCCCCEEEEEEEEECC-CCEEEEECCC T ss_conf 556788999---72----599868999821223011789999878-9889994244 No 29 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=98.75 E-value=5.4e-09 Score=77.48 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=81.5 Q ss_pred HHHHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 799999999868988881--574799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -+.+|++++++|||++++ ..+++.+|+.+++++||||+ |||+--..||| |++++.+.+|+.++ T Consensus 119 K~~~k~~~~~~gvp~~p~~~~~~~~~~~a~~~a~~ig~Pv-vlK~~~g~gG~--------------G~~~v~~~~el~~a 183 (1150) T 3hbl_A 119 KVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL-MIKATSGGGGK--------------GMRIVREESELEDA 183 (1150) T ss_dssp HHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSE-EEECCC---------------------CEECCSSSCTHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCCC--------------CEEEECCHHHHHHH T ss_conf 9999999998699848896877799999999998669989-99988899978--------------85788999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEE Q ss_conf 9986187654421222224433011034555650589999983477804899 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFI 134 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii 134 (398) ++.....-. +. ..-..|+||+.++..+|+-+.+..|.... .+.+ T Consensus 184 ~~~~~~~~~----~~---f~~~~v~iE~~~~~~~~iev~v~~d~~g~-~i~~ 227 (1150) T 3hbl_A 184 FHRAKSEAE----KS---FGNSEVYIERYIDNPKHIEVQVIGDEHGN-IVHL 227 (1150) T ss_dssp HHSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSSSC-EEEE T ss_pred HHHHHHHHH----HH---CCCCCEEEEEECCCCEEEEEEEEEECCCC-EEEE T ss_conf 999999999----73---69986899983389859999999838999-8996 No 30 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=98.71 E-value=4.4e-07 Score=64.92 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=100.7 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) =+..|++|+++|||+|++.+....+.. ...++++|+ |||+-- || ..-||..+++.++..++.+ T Consensus 133 K~~~k~il~~~gI~tp~~~~~~~~~~~--~~~~~~~P~-vVKP~~--~g------------sS~Gv~~v~~~~el~~~~~ 195 (343) T 1e4e_A 133 KSLTYIVAKNAGIATPAFWVINKDDRP--VAATFTYPV-FVKPAR--SG------------SSFGVKKVNSADELDYAIE 195 (343) T ss_dssp HHHHHHHHHHTTCBCCCEEEECTTCCC--CGGGSCSCE-EEEESS--CC------------TTTTCEEECSGGGHHHHHH T ss_pred CHHHHHHHHHCCCCCCCHHCCCCHHHH--HHHHCCCCE-EEEECC--CC------------CCCCCCCCCCHHHHHHHHH T ss_conf 066688999809998702001214288--887538985-788667--77------------7778652465788899999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCE---EEEEECCCCCCHHHHHHHCHHHHE--EEEC Q ss_conf 86187654421222224433011034555650589999983477804---899844788402455574831220--3321 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMV---AFIASTQGGMDIEEVAKDYPQKIF--KLLI 159 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~---vii~S~~GGvdIE~va~~~p~~I~--~~~i 159 (398) +.+.. -+.+||||+++ ++|+-+++..+...-.+ .-+....+--+.... ..+.... ...+ T Consensus 196 ~~~~~-------------~~~vlvEefI~-G~E~~v~vl~~~~~~~~~~i~ei~~~~~~~~~~~~--~~~~~~~~~~~~~ 259 (343) T 1e4e_A 196 SARQY-------------DSKILIEQAVS-GCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQE--VEPEKGSENAVIT 259 (343) T ss_dssp HHTTT-------------CSSEEEEECCC-SEEEEEEEEEETTCCEECCCEEEEESSSCCCGGGS--SSGGGCCSSEEEC T ss_pred HHHHH-------------HHHHHHHHCCC-CEEEEEEEECCCCCEEEEECCCCCCCCCCCEEHHH--CCCCCCCCCCEEC T ss_conf 99863-------------24667874468-74999999658884067611331345664200111--0233577761111 Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE Q ss_conf 44457895788878875198889988599999999899995597510232679905996799400 Q gi|254781049|r 160 DPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398) Q Consensus 160 d~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398) .| ..++....+.+.++..+.++++--.+..-+|+ .++++|+++.++. T Consensus 260 ~P---------------a~~~~~~~~~i~~~A~k~~~~lg~~g~~RvDf---~~d~~g~~yvlEv 306 (343) T 1e4e_A 260 VP---------------ADLSAEERGRIQETVKKIYKTLGCRGLARVDM---FLQDNGRIVLNEV 306 (343) T ss_dssp SS---------------CSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEE---EECTTCCEEEEEE T ss_pred CC---------------CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEECCCCEEEEEE T ss_conf 44---------------32348999999999999999839950799899---9948992999985 No 31 >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Probab=98.69 E-value=1.3e-07 Score=68.36 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=78.7 Q ss_pred HHHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 99999999868988881--5747999999999872998699971213687656565567777777079958999999999 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398) ..+|+++.++|+|+|++ ..+++.+|+.++++++|||+ ++|+---.||| |.+++.|.+|+.++. T Consensus 122 ~~~r~~~~~~gvp~~p~~~~~~~~~eea~~~a~~iGyPv-iiKps~ggGGr--------------Gm~vV~~~~el~~a~ 186 (461) T 2dzd_A 122 VKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPI-IIKAALGGGGR--------------GMRIVRSKSEVKEAF 186 (461) T ss_dssp HHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCE-EEEESTTCSSS--------------SEEEECCGGGHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCCC--------------CCEEECCHHHHHHHH T ss_conf 998999998699835663556899999999887519858-97402478998--------------725758999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEE Q ss_conf 986187654421222224433011034555650589999983477804899 Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFI 134 (398) Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii 134 (398) +.-...- .....-..|+||++++..+|+=+-+..|.... .+.+ T Consensus 187 ~~a~~ea-------~~~fg~~~v~vEk~i~~~rhiEVqvl~D~~g~-~i~l 229 (461) T 2dzd_A 187 ERAKSEA-------KAAFGSDEVYVEKLIENPKHIEVQILGDYEGN-IVHL 229 (461) T ss_dssp HHHHHHH-------HHHTSCCCEEEEECCCSCEEEEEEEEECTTCC-EEEE T ss_pred HHHHHHH-------HHHCCCCCEEEEEECCCCEEEEEEEEECCCCC-EEEE T ss_conf 9999988-------87469986899984399749999999838881-9997 No 32 >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Probab=98.68 E-value=2.7e-08 Score=72.89 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=90.9 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) =+..|++|.+.|||+|++..+++.+|+.++++++|||+ |+|+- ..|.-| +|+.++++.++....+ T Consensus 80 K~~~K~~l~~~gIpt~~~~~v~s~~el~~~~~~iG~P~-VlKp~-~~g~~g------------~g~~vv~~~e~~~~~~- 144 (355) T 3eth_A 80 RLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELA-IVKRR-TGGYDG------------RGQWRLRANETEQLPA- 144 (355) T ss_dssp HHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSEE-EEEES-SSCCTT------------TTEEEEETTCGGGSCG- T ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCE-EEEEC-CCCCCC------------CCCEECCCHHHHHHHH- T ss_conf 39999999976989887332368999999887539826-99981-345467------------6315459588999988- Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCCCC Q ss_conf 86187654421222224433011034555650589999983477804899844788402455574831220332144457 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIG 164 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~~g 164 (398) + ....+++|++++..+|+-+.+.+|.. ..++.... .| .. .+.-+....+.|. T Consensus 145 ~----------------~~~~~ivEe~i~~~~E~sv~~~r~~~--~~~~~~~~-----~~-~~--~~~~~~~~~~~P~-- 196 (355) T 3eth_A 145 E----------------CYGECIVEQGINFSGEVSLVGARGFD--GSTVFYPL-----TH-NL--HQDGILRTSVAFP-- 196 (355) T ss_dssp G----------------GTTTEEEEECCCCSEEEEEEEEECTT--SCEEECCC-----EE-EE--EETTEEEEEEECS-- T ss_pred H----------------CCCCEEEEECCCCCEEEEEEEEECCC--CEEEEECC-----EE-EE--CCCCCCEEEECCC-- T ss_conf 6----------------47861565215763788763133388--50997034-----02-00--1245420330251-- Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEE Q ss_conf 895788878875198889988599999999899995597510232679905996799 Q gi|254781049|r 165 VTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRV 221 (398) Q Consensus 165 l~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvA 221 (398) .++......+.++..++.+.+--....-+| +.++++| ++. T Consensus 197 -------------~i~~~~~~~~~~~a~~i~~~l~~~Gv~~vE---f~v~~~~-~~v 236 (355) T 3eth_A 197 -------------QANAQQQARAEEMLSAIMQELGYVGVMAME---CFVTPQG-LLI 236 (355) T ss_dssp -------------SCCHHHHHHHHHHHHHHHHHHTCCEEEEEE---EEEETTE-EEE T ss_pred -------------CHHHHHHHHHHHHHHHHHHHCCCCCCEEEE---EEEECCC-EEE T ss_conf -------------010689999999999999856471764889---9997895-699 No 33 >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Probab=98.67 E-value=4.5e-07 Score=64.85 Aligned_cols=170 Identities=19% Similarity=0.152 Sum_probs=100.0 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 799999999868988881574799999--999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAA--ESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea--~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) =+.+|++|+++|||+|++.+..+.++. ....+.++||+ |||+- .. |- .=||.++++.+++.++ T Consensus 152 K~~tk~il~~~gIptp~~~~~~~~~~~~~~~~~~~l~~P~-vVKP~-~~-Gs------------S~GV~~v~~~~el~~~ 216 (373) T 3lwb_A 152 KEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPV-FVKPA-RG-GS------------SIGVSRVSSWDQLPAA 216 (373) T ss_dssp HHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCSCE-EEEES-BC-ST------------TTTCEEECSGGGHHHH T ss_pred CHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCCCE-EEEEC-CC-CC------------CCCCEECCCHHHHHHH T ss_conf 3989999997286755301001013579999988619988-99978-88-64------------1797630668888888 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCC Q ss_conf 99861876544212222244330110345556505899999834778048998447884024555748312203321444 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPL 162 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~ 162 (398) .+..+... +.++||+.++ .+|+.+++..++... + ..+..+-+... . ..... T Consensus 217 ~~~~~~~~-------------~~vlvE~~I~-g~E~~v~vi~~~~g~-~--~~~~~~ei~~~--~----------~~~~~ 267 (373) T 3lwb_A 217 VARARRHD-------------PKVIVEAAIS-GRELECGVLEMPDGT-L--EASTLGEIRVA--G----------VRGRE 267 (373) T ss_dssp HHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTTSC-E--EECCCEEEECC--S----------TTCSE T ss_pred HHHHHCCC-------------CCCCCEEEEC-CCEEEEEEEECCCCC-C--CCCEEEEEEEC--C----------CCCCC T ss_conf 88643037-------------5324225761-507999999615786-2--10101027713--3----------12554 Q ss_pred CCCCHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE Q ss_conf 5789578887887------51988899885999999998999955975102326799059967994 Q gi|254781049|r 163 IGVTSEDVASLCD------MLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVL 222 (398) Q Consensus 163 ~gl~~~~~~~l~~------~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAl 222 (398) ....+++...... -..++....+.+.++..+.|+++--.+..-++ +.++++| ++.+ T Consensus 268 ~~~~dy~~ky~~~~~~~~~pa~~~~~~~~~i~~~A~~a~~aLg~~g~~RvD---f~~~~~~-~yvl 329 (373) T 3lwb_A 268 DSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVD---FFLTDDG-PVIN 329 (373) T ss_dssp ESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEE---EEEETTE-EEEE T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE---EEEECCE-EEEE T ss_conf 332443330035775346787678899999999999999996994089899---9999990-7999 No 34 >2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... Probab=98.63 E-value=3.3e-07 Score=65.76 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=79.8 Q ss_pred HHHHHHHHHCCCCCCCC---EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 99999999868988881---574799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 6 YQAKALLRKYNVPVAKG---VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g---~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) ..+|++..+.|+|+.++ .+.++.+++.+++++||||+ +||+---.|||| .+++.+.+|+.++ T Consensus 117 ~~ar~la~~~gvp~ip~~~~~~~~~~~ea~~~a~~iGyPV-iIKas~ggGGrG--------------mriv~~~~el~~~ 181 (449) T 2w70_A 117 VSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPV-IIKASGGGGGRG--------------MRVVRGDAELAQS 181 (449) T ss_dssp HHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSE-EEEETTCCTTTT--------------CEEECSHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECCCCCCCC--------------CEEECCCHHHHHH T ss_conf 9999999985999689876666885999999998669966-885211212246--------------3898681667999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 99861876544212222244330110345556505899999834778048998 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) .+.....- + ....-..|+||+.++..+|.-+-+..|.... .+.++ T Consensus 182 ~~~~~~ea----~---~~f~~~~v~iE~~l~~~rhiEvqv~~D~~g~-~i~l~ 226 (449) T 2w70_A 182 ISMTRAEA----K---AAFSNDMVYMEKYLENPRHVEIQVLADGQGN-AIYLA 226 (449) T ss_dssp HHHHHHHH----H---HHHSCCCEEEEECCSSCEEEEEEEEECTTSC-EEEEE T ss_pred HHHHHHHH----H---HHCCCCCEEEEECCCCCHHHHEEEEECCCCC-EEEEC T ss_conf 99999999----9---8469985786101047141114677438997-50124 No 35 >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Probab=98.57 E-value=2.8e-07 Score=66.22 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=74.2 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) -..+|+++++.|||+|+.. ..+++++||+ ++|+.-..||| |+.++.|++|+.++.. T Consensus 125 k~~~k~~l~~~gip~p~~~---------~~~~~ig~Pv-ivKp~~~~Gg~--------------G~~iv~~~~el~~~~~ 180 (361) T 2r7k_A 125 RSLEGKLLREAGLRVPKKY---------ESPEDIDGTV-IVKFPGARGGR--------------GYFIASSTEEFYKKAE 180 (361) T ss_dssp HHHHHHHHHHTTCCCCCEE---------SSGGGCCSCE-EEECSCCCC-----------------EEEESSHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHH---------HHHHHCCCCE-EEEECCCCCCC--------------EEEEECCHHHHHHHHH T ss_conf 9999999997499983555---------4554067778-99975678980--------------3899789999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCC Q ss_conf 86187654421222224433011034555650589999983477804899844788 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGG 140 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GG 140 (398) +....... .....+.+++|++++. .+|+.....++.....-+++-..|. T Consensus 181 ~~~~~~~~------~~~~~~~~lieefi~G-~~~~~~~~~~~~~~e~ev~~~~~g~ 229 (361) T 2r7k_A 181 DLKKRGIL------TDEDIANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRY 229 (361) T ss_dssp HHHHTTSC------CHHHHHHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEE T ss_pred HHHHHHHH------CCCCHHHHHHHHHCCC-CEEEEEEECCCCCCEEEEEEECCCC T ss_conf 99986342------2463167899870478-4566542046642147997753687 No 36 >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Probab=98.53 E-value=2.9e-06 Score=59.49 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=98.1 Q ss_pred HHHHHHHHHH-CCCCCCCCEEECC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH Q ss_conf 7999999998-6898888157479----9999999987299869997121368765656556777777707995899999 Q gi|254781049|r 5 EYQAKALLRK-YNVPVAKGVVISS----VHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSV 79 (398) Q Consensus 5 EyqaK~lL~~-~GIpvp~g~~a~s----~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea 79 (398) =+.+|++|+. .|+|+|++.+... .+.....+++++||+ |+|+- .||- .-||.++.+.+|+ T Consensus 162 K~~tK~il~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~lg~Pv-ivKP~--~gGs------------S~Gv~~V~~~~el 226 (383) T 3k3p_A 162 KITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPV-FVKPA--NMGS------------SVGISKAENRTDL 226 (383) T ss_dssp HHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCSSE-EEEEC--C------------------CEEESSHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECC--CCCC------------CCCCCCCCCHHHH T ss_conf 9999999987168887642123433204678999999738988-99788--8677------------9897221489999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEEC Q ss_conf 99999861876544212222244330110345556505899999834778048998447884024555748312203321 Q gi|254781049|r 80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLI 159 (398) Q Consensus 80 ~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~i 159 (398) ..+....+.. -+.+|||+.++ .+|+-+++..++... ++... .-+......... T Consensus 227 ~~a~~~a~~~-------------~~~vlvEefI~-g~E~tv~v~~~~~~~--~~~~~--e~i~~~~~~~~~--------- 279 (383) T 3k3p_A 227 KQAIALALKY-------------DSRVLIEQGVD-AREIEVGILGNTDVK--TTLPG--EIVKDVAFYDYE--------- 279 (383) T ss_dssp HHHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSSCE--ECCCE--EEC------------------ T ss_pred HHHHHHHHHH-------------HHHHHHHCEEC-CCCCEEEEEECCCCE--EEEEC--CCCCCCCCCCHH--------- T ss_conf 9999987644-------------37878515651-332178887247750--55200--100246653300--------- Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE Q ss_conf 44457895788878875198889988599999999899995597510232679905996799400 Q gi|254781049|r 160 DPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398) Q Consensus 160 d~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398) .-.............++.+..+++.++..++|+.+--.+..-+|+ .++++|+++.++. T Consensus 280 ----~~~~~~~~~~~~pa~~~~~l~~~i~~~A~ka~~~Lg~~g~~RiDf---~ld~dg~~y~lEv 337 (383) T 3k3p_A 280 ----AKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF---FLTEDGKVYLNEL 337 (383) T ss_dssp ------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE---EECTTCCEEEEEE T ss_pred ----EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEE T ss_conf ----134168744457766579999999999999999849952798999---9938996899986 No 37 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=98.53 E-value=5.9e-07 Score=64.08 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=68.8 Q ss_pred HHHHHHHHHHCCCCCCCCEE--ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 79999999986898888157--4799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVV--ISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~--a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -+..|++|++.|||+|++.. .+|++|+..+++++|||+ |+|+-. .|+- .+|..++++.++..++ T Consensus 124 R~~eK~~l~~~gipt~~~~~~~~~s~~dl~~~~~~iG~P~-vlK~~~-~Gyd------------g~gq~~i~~~~d~~~~ 189 (403) T 3k5i_A 124 KFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPL-MLKSKT-MAYD------------GRGNFRVNSQDDIPEA 189 (403) T ss_dssp HHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHCSSE-EEEESS-SCCT------------TTTEEEECSTTSHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEECE-ECCC------------CCCCEECCCHHHHHHH T ss_conf 9999998886599988750336689999999999718988-999640-5668------------8773301422457888 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCE Q ss_conf 9986187654421222224433011034555650589999983477804 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMV 131 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~ 131 (398) ....- + ..+++|++++..+|+-+-+. |..+.. T Consensus 190 ~~~~~------------~---~~~i~E~~v~~~~Eisviv~--r~~~~i 221 (403) T 3k5i_A 190 LEALK------------D---RPLYAEKWAYFKMELAVIVV--KTKDEV 221 (403) T ss_dssp HHHTT------------T---SCEEEEECCCEEEEEEEEEE--ECSSCE T ss_pred HHHCC------------C---CEEEEEEEEEEEEEEEEEEE--ECCCCE T ss_conf 75137------------8---54898756657765437898--615865 No 38 >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Probab=98.49 E-value=4.9e-06 Score=57.99 Aligned_cols=98 Identities=12% Similarity=0.213 Sum_probs=68.9 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) -+..|++|+++|||+|+.. +.+++++||+ |+|+.--.||| |+.+++|.+|+.++.+ T Consensus 101 K~~~k~~l~~~Gip~p~~~---------~~~~~ig~Pv-ivKp~~g~gg~--------------G~~iv~~~~el~~~~~ 156 (334) T 2r85_A 101 RNLERKWLKKAGIRVPEVY---------EDPDDIEKPV-IVKPHGAKGGK--------------GYFLAKDPEDFWRKAE 156 (334) T ss_dssp HHHHHHHHHHTTCCCCCBC---------SCGGGCCSCE-EEEECC----T--------------TCEEESSHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHH---------HHHHHCCCCE-EEEECCCCCCC--------------EEEEECCHHHHHHHHH T ss_conf 9999999998597997467---------6487669825-88554789993--------------3799779999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 861876544212222244330110345556505899999834778048998 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) +..... .....+.+++||.+. +.|+.+....+.......++. T Consensus 157 ~~~~~~--------~~~~~~~~iiee~i~-G~~~~~~~~~~~~~~~~~v~~ 198 (334) T 2r85_A 157 KFLGIK--------RKEDLKNIQIQEYVL-GVPVYPHYFYSKVREELELMS 198 (334) T ss_dssp HHHCCC--------SGGGCCSEEEEECCC-CEEEEEEEEEETTTTEEEEEE T ss_pred HHHHHH--------HHCCCCCEEEEEEEC-CCEEEEEEECCCCCEEEEEEE T ss_conf 998765--------427888779999835-846876653256530699999 No 39 >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Probab=98.47 E-value=2e-06 Score=60.57 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=96.6 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) =+.+|++|+++|||+|++....+.++ ...+++||+ |||+- . ||- .-||.++++.+|+.++.+ T Consensus 119 K~~~k~~l~~~gIptp~~~~~~~~~~---~~~~~~~P~-ivKP~-~-~gs------------S~Gv~~v~~~~el~~a~~ 180 (322) T 2fb9_A 119 KDLSKRVLAQAGVPVVPWVAVRKGEP---PVVPFDPPF-FVKPA-N-TGS------------SVGISRVERFQDLEAALA 180 (322) T ss_dssp HHHHHHHHHHTTCCCCCEEEEETTSC---CCCCSCSCE-EEEET-T-CCT------------TTTCEEESSHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHH---HHHCCCCCE-EEEEC-C-CCC------------CCCCEEECCHHHHHHHHH T ss_conf 99999999983998533433222023---553258868-99726-8-887------------768668368999999987 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEEC--CCCC-CHHHHHHHCHHHHEEEECCC Q ss_conf 86187654421222224433011034555650589999983477804899844--7884-02455574831220332144 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAST--QGGM-DIEEVAKDYPQKIFKLLIDP 161 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~--~GGv-dIE~va~~~p~~I~~~~id~ 161 (398) ..+... ..+++|+.+...+|+-+++..+.... .+.+... ..+. +-+ ++..+. ....+.| T Consensus 181 ~~~~~~-------------~~~~~e~~i~~g~E~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~--~k~~~~--~~~~~~p 242 (322) T 2fb9_A 181 LAFRYD-------------EKAVVEKALSPVRELEVGVLGNVFGE-ASPVGEVRYEAPFYDYE--TKYTPG--RAELLIP 242 (322) T ss_dssp HHTTTC-------------SEEEEEECCSSCEEEEEEEESSSSCE-EEEEEEEEEECCEEETT--TEEECC--EEEEESS T ss_pred HHHCCC-------------CCCCCHHEEECCEEEEEEEEECCCCC-EEEEEEECCCCCCCCHH--HEEECC--CCCCCCC T ss_conf 530022-------------23342001312308999997234462-20135531345764241--168237--6311468 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE Q ss_conf 45789578887887519888998859999999989999559751023267990599679940 Q gi|254781049|r 162 LIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLD 223 (398) Q Consensus 162 ~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlD 223 (398) ..++.+....+.++..++++.+--.+..-+| +.++ +|+++.++ T Consensus 243 ---------------~~~~~~~~~~i~~~a~k~~~~Lg~~g~~rvD---f~~~-~g~~yvlE 285 (322) T 2fb9_A 243 ---------------APLDPGTQETVQELALKAYKVLGVRGMARVD---FFLA-EGELYLNE 285 (322) T ss_dssp ---------------CCCCTTHHHHHHHHHHHHHHHHTCCSEEEEE---EEEE-TTEEEEEE T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EEEE-CCEEEEEE T ss_conf ---------------7414667568999999999981996179999---9999-99899998 No 40 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=98.44 E-value=2.5e-07 Score=66.53 Aligned_cols=108 Identities=20% Similarity=0.279 Sum_probs=81.6 Q ss_pred HHHHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 799999999868988881--574799999999987299869997121368765656556777777707995899999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398) -+.+|++..+.|+|+++| .+.++.+|+.+++++||||+ +||+- +||-|+ |.++|.+.+|+.++ T Consensus 135 k~~~r~~a~~~~vp~~~g~~~~~~~~~~~~~~~~~ig~pv-~~k~~--~gggg~------------g~~~~~~~~~~~~~ 199 (1165) T 2qf7_A 135 KVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPV-MLKAS--WGGGGR------------GMRVIRSEADLAKE 199 (1165) T ss_dssp HHHHHHHHHHTTCCBC---------------------------------------------------------------- T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE-EEEEC--CCCCCC------------CCEEECCHHHHHHH T ss_conf 9999999998598988897888899999999998649978-99978--889977------------52697899999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 99861876544212222244330110345556505899999834778048998 Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) +++....- ++ ...-.+|++|+.++..+++=+-+..|+... .+-++ T Consensus 200 ~~~~~~~~----~~---~f~~~~v~~e~~~~~~rhievq~~~d~~g~-~~~~~ 244 (1165) T 2qf7_A 200 VTEAKREA----MA---AFGKDEVYLEKLVERARHVESQILGDTHGN-VVHLF 244 (1165) T ss_dssp ---------------------------CCCSSEEEEEEEEEECTTSC-EEEEE T ss_pred HHHHHHHH----HH---HCCCCCEEEEEECCCCEEEEEEEEECCCCC-EEEEE T ss_conf 99999999----97---269985899985288708999999718898-89971 No 41 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=98.40 E-value=2e-06 Score=60.54 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=73.2 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) ...|++++++|||++++..+++.+++...++++++|+ |+|+--..|| +||.++.+.++..++.+. T Consensus 115 ~~~k~~~~~~~ipt~~~~~~~~~~e~~~~~~~~~~Pv-viK~~~~~gg--------------~gv~~v~~~~~~~~a~~~ 179 (391) T 1kjq_A 115 GIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPC-IVKPVMSSSG--------------KGQTFIRSAEQLAQAWKY 179 (391) T ss_dssp HHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSSE-EEEESCC-----------------CCCEEECSGGGHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-EEEEEECCCC--------------CCEEEECCHHHHHHHHHH T ss_conf 9998766515888401346699999999998728872-4543203688--------------854997688899999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC Q ss_conf 618765442122222443301103455565058999998347 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398) ...... .+ -..+++|+..+..+|.-+.+..|.. T Consensus 180 a~~~~~-------~~--~~~~~~e~~~~~~~~~~~~~~~~~~ 212 (391) T 1kjq_A 180 AQQGGR-------AG--AGRVIVEGVVKFDFEITLLTVSAVD 212 (391) T ss_dssp HHHHSG-------GG--CCCEEEEECCCCSEEEEEEEEEETT T ss_pred HHHHCC-------CC--CCCCEEEEEEECCEEEEEEEEECCC T ss_conf 887522-------58--8761489997222246887786168 No 42 >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.35 E-value=2e-07 Score=67.11 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=65.0 Q ss_pred HHHHHHHHCCCCCCCC--EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 9999999868988881--57479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 7 QAKALLRKYNVPVAKG--VVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 7 qaK~lL~~~GIpvp~g--~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) .||+++++.|||+.++ ..+++.+|+...++++|||+ ++|+.--.||| |++++++.+|+.+++. T Consensus 11 ~Ak~la~~aGVP~vPg~~~~~~~~~ea~~~a~~iG~Pv-~vKaa~GGGG~--------------Gm~iv~~~~el~~a~~ 75 (108) T 2cqy_A 11 ESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPV-MIKASAGGGGK--------------GMRIAWDDEETRDGFR 75 (108) T ss_dssp CSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSE-EEEETTSCCTT--------------TCEEESSHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCE-EEECCCCCCCC--------------CEEEECCHHHHHHHHH T ss_conf 99999999391928886988899999999998719974-98814567544--------------0278689999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEE Q ss_conf 8618765442122222443301103455565058 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILREL 118 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ 118 (398) ..... .+ ....=..+|||++++..|+. T Consensus 76 ~a~~e----A~---~~Fgd~~v~iEk~i~~~RHI 102 (108) T 2cqy_A 76 LSSQE----AA---SSFGDDRLLIEKFIDNPRHI 102 (108) T ss_dssp HHHHH----HH---HHTSSCCEEEEECCSSSSCC T ss_pred HHHHH----HH---HCCCCCCEEEEEECCCCEEE T ss_conf 98899----99---70799978988707998088 No 43 >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} Probab=98.26 E-value=2.3e-06 Score=60.19 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=74.0 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) +..+++|+++|||+|+...+.+..+......+++||+ |+|+..-+|+| ||..++|.+|+.....+ T Consensus 116 ~~~~~~l~~~gip~p~~~~~~~~~e~~~~~~~~~~P~-vvKP~~g~gs~--------------gv~~i~~~~el~~~~~~ 180 (331) T 2pn1_A 116 YTMYEYCLRQGIAHARTYATMASFEEALAAGEVQLPV-FVKPRNGSASI--------------EVRRVETVEEVEQLFSK 180 (331) T ss_dssp HHHHHHHHHHTCCCCCEESSHHHHHHHHHTTSSCSCE-EEEESBC----------------------------------- T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCE-EEEECCCCCCC--------------CEEEECCHHHHHHHHHH T ss_conf 9999999986998322213346588999887538977-99868889888--------------75997479999999872 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEE Q ss_conf 61876544212222244330110345556505899999834778048998 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIA 135 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~ 135 (398) . ..++|||.++. .|+-+.+..|...+.+..+. T Consensus 181 ~-----------------~~~iiqe~i~G-~e~~v~~~~~~~~g~~~~~~ 212 (331) T 2pn1_A 181 N-----------------TDLIVQELLVG-QELGVDAYVDLISGKVTSIF 212 (331) T ss_dssp -------------------CEEEEECCCS-EEEEEEEEECTTTCCEEEEE T ss_pred C-----------------CCHHHHHHHCC-CEEEEEEEEECCCCCEEEEE T ss_conf 6-----------------12212454067-33279999985799165430 No 44 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=98.05 E-value=0.00019 Score=47.60 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=94.0 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCC---------------CEEEECCCC----------CCHHHHHHHHHHHHCCCCC Q ss_conf 817999555036899999999658996---------------248842788----------8989999999998619986 Q gi|254781049|r 267 GNIGCMVNGAGLAMATMDIIKLYGGAP---------------ANFLDVGGG----------ADQDKVAAAFKIITSDSSV 321 (398) Q Consensus 267 G~Ig~~vnGaGlamatmD~i~~~Gg~p---------------ANFlD~gG~----------a~~e~~~~a~~~il~~~~v 321 (398) +.|..+..|+.|+--.++.+...++.. ..+.|+|.. .+++...+++..++.||+| T Consensus 250 ~~i~gl~sGGtLa~ea~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~dlgdd~~T~GrphpmiDP~~r~~~l~~~~~Dp~v 329 (480) T 3dmy_A 250 GFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQV 329 (480) T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHHHHHGGGCTTE T ss_pred CCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 32022036215999989998864156777420002220478886423476254246866565868999999998459987 Q ss_pred CEEEEEC-CCCHHH---HHHHHHHHHHHHHHC--CCCCCEEEECCCCC-----HHHHHHHHHHCCCCEEEECCHHHHHHH Q ss_conf 5899963-586132---899999999999972--99987999748985-----899999999769958994998999999 Q gi|254781049|r 322 KGILINI-FGGIMR---CDVLVKGILSAVKEV--KINIPLVMRLEGAN-----VDIGNRLIAESGLNVITAIDLDDAAQK 390 (398) Q Consensus 322 k~iliNi-fGGI~~---cd~vA~gii~a~~~~--~~~~pivvRl~Gtn-----~~~g~~il~~~g~~~~~~~~~~~A~~~ 390 (398) -+|++.+ +|--.. .-.++..|.++.+.. +..+|+|+-..||. .++.++.|+++|++++ .+.++|++. T Consensus 330 ~vVLldvVlg~ga~~dpa~~l~~aI~~a~~a~~~~~~~~vVa~v~Gt~~dpq~~~~~~~~L~~AGV~v~--~S~~~A~r~ 407 (480) T 3dmy_A 330 RVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVV--SSLPEATLL 407 (480) T ss_dssp EEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEEC--SSHHHHHHH T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEE--CCHHHHHHH T ss_conf 789996303576565728889999999998644289816999975777786247999999997898342--888999999 Q ss_pred HHHHHHC Q ss_conf 9998506 Q gi|254781049|r 391 IVHAVKG 397 (398) Q Consensus 391 ~v~~~k~ 397 (398) +.++.+. T Consensus 408 a~~l~~~ 414 (480) T 3dmy_A 408 AAALIHP 414 (480) T ss_dssp HHHHTSC T ss_pred HHHHHCC T ss_conf 9997087 No 45 >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Probab=98.02 E-value=6.7e-06 Score=57.13 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=41.2 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCC Q ss_conf 99999999868988881574799999999987299869997121368765 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRG 55 (398) +..|++|+++|||+|++..+++.+++..+++++++|+ |+|+---+||+| T Consensus 90 ~~~~~~l~~~gip~P~~~~~~~~~~~~~~~~~~~~P~-VvKP~~g~~g~G 138 (280) T 1uc8_A 90 WATSVALAKAGLPQPKTALATDREEALRLMEAFGYPV-VLKPVIGSWGRL 138 (280) T ss_dssp HHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSE-EEECSBCCBCSH T ss_pred HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCE-EEECCCCCCCCC T ss_conf 9999999987979688799799999999999709968-997288888767 No 46 >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Probab=97.65 E-value=0.00059 Score=44.32 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=93.3 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 28817999555036899999999658996248842788898-99999999986199865899963586132899999999 Q gi|254781049|r 265 LDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQ-DKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGIL 343 (398) Q Consensus 265 LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~-e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii 343 (398) -.|+||++.--++|+...++.+...|---.-+.-+||.+.. .....+++.+..||+.|+|++ ||-+-+-+. +-.. T Consensus 167 ~~G~VgivSqSG~l~~ei~~~~~~~g~G~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~Ivl--y~E~~g~~e--~~~a 242 (334) T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVV--LGEIGGTEE--YKIC 242 (334) T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEE--EEESSSSHH--HHHH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEE--ECCCCCCHH--HHHH T ss_conf 787479996565289999999998299875898058887568749999998644999849999--845478379--9999 Q ss_pred HHHHHCCCCCCEEEECCCCCHHHH-----------------------HHHHHHCCCCEE-EECCHHHHHHHHHH Q ss_conf 999972999879997489858999-----------------------999997699589-94998999999999 Q gi|254781049|r 344 SAVKEVKINIPLVMRLEGANVDIG-----------------------NRLIAESGLNVI-TAIDLDDAAQKIVH 393 (398) Q Consensus 344 ~a~~~~~~~~pivvRl~Gtn~~~g-----------------------~~il~~~g~~~~-~~~~~~~A~~~~v~ 393 (398) ++.++...++|||+-..|..+..+ .+.|+++|+.+. +.++|-++.++..+ T Consensus 243 ~~~k~~~~~KPVVa~kaGrsa~~~~~~~~mgHtGAia~~~~gsa~~k~~al~~aGv~vv~~~~el~~~l~~~~~ 316 (334) T 3mwd_B 243 RGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 316 (334) T ss_dssp HHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHH T ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH T ss_conf 99985589998899997326777885555535312036898899999999998799687999999999999999 No 47 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} Probab=97.57 E-value=0.0036 Score=39.13 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=88.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH Q ss_conf 8817999555036899999999658996248842788898-999999999861998658999635861328999999999 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQ-DKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILS 344 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~-e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~ 344 (398) .|+|+.+...++++.+.+|.....|---..|.-+|+.+.. ......++.+..||++|+|++-+=++-..-..+ .. T Consensus 151 ~G~va~iSQSG~l~~~i~~~~~~~g~G~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~~~~~~~~----~~ 226 (297) T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERA----AE 226 (297) T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHH----HH T ss_pred CCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHH----HH T ss_conf 98767997335899999999998499757899537875357517799999864788667999997036530577----78 Q ss_pred HHHHCCCCCCEEEECCCCCHHHH--------------------HHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 99972999879997489858999--------------------99999769958994998999999999 Q gi|254781049|r 345 AVKEVKINIPLVMRLEGANVDIG--------------------NRLIAESGLNVITAIDLDDAAQKIVH 393 (398) Q Consensus 345 a~~~~~~~~pivvRl~Gtn~~~g--------------------~~il~~~g~~~~~~~~~~~A~~~~v~ 393 (398) +.+....++|||+-..|..+..+ ...++++| +..+++++|-..-+-+ T Consensus 227 ~~~~~~~~KPVv~lk~Grs~~~~~a~sHTGal~~~~aG~~~~~~aa~~qaG--Vi~v~~~~el~~~lk~ 293 (297) T 2yv2_A 227 MIKKGEFTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAG--VEVAETPFEVPELVRK 293 (297) T ss_dssp HHHTTSCCSCEEEEESCCC------------------CSHHHHHHHHHTTT--CEEESSGGGHHHHHHH T ss_pred HHHHCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCC--CEEECCHHHHHHHHHH T ss_conf 877347999889999515787432333254412688888999999999879--8591999999999999 No 48 >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Probab=97.55 E-value=0.00044 Score=45.17 Aligned_cols=128 Identities=16% Similarity=0.237 Sum_probs=95.1 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCCCH-HHHHHHHHHH Q ss_conf 2881799955503689999999965899624884278889-8999999999861998658999635861-3289999999 Q gi|254781049|r 265 LDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGAD-QDKVAAAFKIITSDSSVKGILINIFGGI-MRCDVLVKGI 342 (398) Q Consensus 265 LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~-~e~~~~a~~~il~~~~vk~iliNifGGI-~~cd~vA~gi 342 (398) ..|+||.+..-++++.+.+|.....|.--.-|.-+|+.+. -.....+++.+..||+.|+|++ ++-+ -+-..-+... T Consensus 151 ~~G~vgiiSqSG~l~~~i~~~~~~~G~G~S~~Vs~Gn~~~~g~~~~D~L~~l~~Dp~Tk~I~l--y~E~~~~~e~~~~~~ 228 (305) T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIIL--IGEIGGNAEENAAEF 228 (305) T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEE--EEESSSSHHHHHHHH T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEE--EEEECCCHHHHHHHH T ss_conf 776614998224389999999997699879998079886689988999999854988738999--986447467788899 Q ss_pred HHHHHHCCCCCCEEEECCCCCH--------------------HHHHHHHHHCCCCEE-EECCHHHHHHHHHHH Q ss_conf 9999972999879997489858--------------------999999997699589-949989999999998 Q gi|254781049|r 343 LSAVKEVKINIPLVMRLEGANV--------------------DIGNRLIAESGLNVI-TAIDLDDAAQKIVHA 394 (398) Q Consensus 343 i~a~~~~~~~~pivvRl~Gtn~--------------------~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~ 394 (398) +++.++...++|||+-..|..+ +.-...|+++|+... +.++|-+..+++.+- T Consensus 229 ~~a~~~~~~~KPVVa~k~Grsa~~~~a~sHtGAia~~~~g~~~~~~aa~rqaGVi~v~s~~El~~~l~~~~~~ 301 (305) T 2fp4_A 229 LKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301 (305) T ss_dssp HHHHSCSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHHHHH T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHH T ss_conf 9999746778757999832447865646626541047888899999999988886869999999999999986 No 49 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=97.34 E-value=0.0058 Score=37.79 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=89.2 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 288179995550368999999996589962488427888989-9999999986199865899963586132899999999 Q gi|254781049|r 265 LDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQD-KVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGIL 343 (398) Q Consensus 265 LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e-~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii 343 (398) ..|+||.+.--++++.+.+|.....|---..|.-+|+.++.. .....++.+..||+.|+|++-+= ++-+-...+. T Consensus 143 ~~G~i~~iSqSG~l~~~i~~~~~~~giG~S~~vs~Gn~a~v~~~~~D~l~~l~~D~~T~~I~ly~E-~~~~~~~f~~--- 218 (288) T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGE-IGGSAEEEAA--- 218 (288) T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEE-SSSSHHHHHH--- T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE-ECCCHHHHHH--- T ss_conf 788723897034179999998644599876898468775457539999999864668728999997-3688899999--- Q ss_pred HHHHHCCCCCCEEEECCCCC--------------------HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 99997299987999748985--------------------89999999976995899499899999999985 Q gi|254781049|r 344 SAVKEVKINIPLVMRLEGAN--------------------VDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 344 ~a~~~~~~~~pivvRl~Gtn--------------------~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) +++....++|||+-..|.. ++.-...++.+|+ ..+++++|-...+-.+. T Consensus 219 -~a~~~~~~KPVV~lk~Grsa~~~~a~~h~ga~~ag~~~~~~~~~aal~~aGv--~~v~~~~el~~~lk~lL 287 (288) T 2nu8_A 219 -AYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGV--KTVRSLADIGEALKTVL 287 (288) T ss_dssp -HHHHHHCCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTC--EECSSGGGHHHHHHHHC T ss_pred -HHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHH T ss_conf -9999865898799983466887665654545533887659999999997897--58299999999999984 No 50 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=97.28 E-value=0.0061 Score=37.61 Aligned_cols=120 Identities=20% Similarity=0.224 Sum_probs=89.5 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCH-----HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 8817999555036899999999658996248842788898-----99999999986199865899963586132899999 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQ-----DKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVK 340 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~-----e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~ 340 (398) .|+||++.--++++...++.+...|.--..|.-+||.+.. -.+..+++.+..||+.|+|++ +.-++- |.... T Consensus 112 ~G~IgivSqSG~~~~~i~~~~~~~G~G~S~~vs~Gn~~~~~~v~gi~~~d~l~~l~~Dp~T~vIvl-~~E~~~--~~~~~ 188 (480) T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAF-VSKPPA--EAVRL 188 (480) T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEE-EESCCC--HHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE-EEECCC--CHHHH T ss_conf 984589964736999999999974998679998389766565368639999999704999608999-982488--69999 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 99999997299987999748985899999999769958994998999999999850 Q gi|254781049|r 341 GILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 341 gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k 396 (398) -...... ..++|||+-..|-.+... .....++...++||+.+++.+++ T Consensus 189 ~~~~~a~--~~~KPVV~~k~Grs~~~~------~~a~shta~~l~eaA~~a~~L~~ 236 (480) T 3dmy_A 189 KIVNAMK--ATGKPTVALFLGYTPAVA------RDENVWFASSLDEAARLACLLSR 236 (480) T ss_dssp HHHHHHH--HHCSCEEEEETTCCCSSS------EETTEEEESSHHHHHHHHHHHHH T ss_pred HHHHHHH--CCCCCEEEEEECCCCCCC------CCCCEEHHHHHHHHHHHHHHHHC T ss_conf 9999986--189978999846888763------11341013329999999876513 No 51 >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} Probab=97.14 E-value=0.0099 Score=36.24 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=85.8 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCC-HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH Q ss_conf 881799955503689999999965899624884278889-8999999999861998658999635861328999999999 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGAD-QDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILS 344 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~-~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~ 344 (398) .|+||++..-++++.+.++.....|---.-|.-+|+.+. -......++.+..||+.|+|++-+=++-.+-...++ T Consensus 150 ~G~igiiSqSG~l~~~i~~~~~~~G~G~S~~vs~Gn~~~~d~~~~d~l~~~~~Dp~T~~I~ly~E~~g~~~~~~~~---- 225 (294) T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAK---- 225 (294) T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHH---- T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHH---- T ss_conf 8876899813649999999999839988999944887323434999999752499862899999966865089999---- Q ss_pred HHHHCCCCCCEEEECCCCCHHHHH--------------------HHHHHCCCCEEEECCHHHHHHHHH Q ss_conf 999729998799974898589999--------------------999976995899499899999999 Q gi|254781049|r 345 AVKEVKINIPLVMRLEGANVDIGN--------------------RLIAESGLNVITAIDLDDAAQKIV 392 (398) Q Consensus 345 a~~~~~~~~pivvRl~Gtn~~~g~--------------------~il~~~g~~~~~~~~~~~A~~~~v 392 (398) +.+ ..++|||+-..|..+..++ ..++++|+ ..+++++|..+.+- T Consensus 226 ~~~--~~~KPVV~~k~Grsa~~~~a~sHtGala~~~~G~~~~~~aa~~qaGV--~~v~~~~el~~~l~ 289 (294) T 2yv1_A 226 FIE--KMKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGA--YVAKNISDIPKLLA 289 (294) T ss_dssp HHT--TCSSCEEEEEECC-------------------CCHHHHHHHHHHHTC--EECSSTTHHHHHHH T ss_pred HHH--HCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHH T ss_conf 998--64995799982055786444542666416889889999999997798--68399999999999 No 52 >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Probab=97.04 E-value=8e-05 Score=50.02 Aligned_cols=94 Identities=10% Similarity=-0.063 Sum_probs=63.6 Q ss_pred HHHHHHHHHHCCCCCCCCEEE--C--CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 799999999868988881574--7--999999999872998699971213687656565567777777079958999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVI--S--SVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a--~--s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) =+.++.+|+++|+|+|+.... . +..+.......+++|+ |+|+ ..|+.|+ ||.++++.++.. T Consensus 114 K~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~P~-vvKp--~~g~~G~------------Gv~~v~~~~~l~ 178 (309) T 1i7n_A 114 KPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPV-VVKI--GHAHSGM------------GKVKVENHYDFQ 178 (309) T ss_dssp HHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSE-EEEE--SSCSTTT------------TEEEECSHHHHH T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCE-EEEE--CCCCCCC------------CEEEEECHHHHH T ss_conf 799999999729999988621056663788777652269998-9997--9888998------------879996558899 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEEC Q ss_conf 9999861876544212222244330110345556505899999834 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDR 126 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr 126 (398) .+...+.... ..+++|+.++..+|+-+.+.-++ T Consensus 179 ~~~~~~~~~~-------------~~v~ve~~i~~~~d~rv~vi~~~ 211 (309) T 1i7n_A 179 DIASVVALTQ-------------TYATAEPFIDAKYDIRVQKIGNN 211 (309) T ss_dssp HHHHHHHHHT-------------CCEEEEECCCEEEEEEEEEETTE T ss_pred HHHHHHHCCC-------------CCEEEEEEECCCCEEEEEEECCE T ss_conf 9999997239-------------81589876146725899999998 No 53 >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Probab=96.93 E-value=0.019 Score=34.41 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=84.4 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH Q ss_conf 88179995550368999999996589962488427888989-99999999861998658999635861328999999999 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQD-KVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILS 344 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e-~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~ 344 (398) .|+|+.+.-.+++..+.++.....|.--.-|.-+|..+... ....+++.+..||+.|+|++-+=++ -+-..-+. T Consensus 144 ~G~i~~iSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~a~vd~~~~d~l~~l~~D~~T~vI~ly~E~~-~~~~~f~~---- 218 (288) T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAA---- 218 (288) T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHH---- T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEC-CCHHHHHH---- T ss_conf 9981169842137999999999769886999716887657832999999971599976899999968-88999999---- Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHH--------------------HHHHCCCCEEEECCHHHHHHHH Q ss_conf 9997299987999748985899999--------------------9997699589949989999999 Q gi|254781049|r 345 AVKEVKINIPLVMRLEGANVDIGNR--------------------LIAESGLNVITAIDLDDAAQKI 391 (398) Q Consensus 345 a~~~~~~~~pivvRl~Gtn~~~g~~--------------------il~~~g~~~~~~~~~~~A~~~~ 391 (398) +......++|||+-..|..+..++. .++++|+ ..+++++|-..-+ T Consensus 219 ~~~~~~~kKpVV~~k~G~s~~~~~a~sHTgala~~~~G~~~~~~aaf~qaGV--i~v~~~~el~d~a 283 (288) T 1oi7_A 219 AWVKDHMKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGI--PVADTIDEIVELV 283 (288) T ss_dssp HHHHHHCCSCEEEEESCC------------------CCSHHHHHHHHHHHTC--CBCSSHHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHH T ss_conf 9999735798899977643763335430544026788889999999997897--5859999999999 No 54 >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica hm-1} PDB: 1z2o_X* 1z2p_X* Probab=96.91 E-value=0.0025 Score=40.18 Aligned_cols=98 Identities=17% Similarity=0.083 Sum_probs=59.1 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 99999999868988881574799999999987--2998699971213687656565567777777079958999999999 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKT--LPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~--ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398) ...|.+|.+.|||+|++..+++.+++.....+ +++|+ |+|+..-.|++|- | -+.++.+.++..... T Consensus 100 ~~~~~~l~~~~IpvP~~~~v~~~e~~~~~~~~~~l~~P~-vvKP~~~~gs~Gv------h-----~~~iv~~~~~l~~~~ 167 (324) T 1z2n_X 100 EEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLILPF-IVKPENAQGTFNA------H-----QMKIVLEQEGIDDIH 167 (324) T ss_dssp HHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCSCSSE-EEEESBCSSSSGG------G-----EEEEECSGGGGTTCC T ss_pred HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCCCE-EEECCCCCCCCCE------E-----EEEEHHHHHHHHHHH T ss_conf 999999997798989979988889999999862668973-7851657887654------7-----874312066654557 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEE Q ss_conf 986187654421222224433011034555650589999983 Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVD 125 (398) Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~D 125 (398) ...+ .|. -..-..+++++.+. +.|+.+++..+ T Consensus 168 ~~~v------~q~---f~~~~~vl~e~yv~-G~ei~v~~r~s 199 (324) T 1z2n_X 168 FPCL------CQH---YINHNNKIVKVFCI-GNTLKWQTRTS 199 (324) T ss_dssp SSEE------EEE---CCCCTTCEEEEEEE-TTEEEEEEECC T ss_pred HHHH------HHH---HCCCCCEEEEEEEE-CCEEEEEEEEC T ss_conf 9999------987---52478659999971-87679999714 No 55 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=96.77 E-value=0.0035 Score=39.19 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=61.4 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) ...|+.+.+.|+|+|......+.++ ...+..+++|+ ++|.-...|+|| |..+..+.++....+.. T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~k~~~~~~~~g-------------~~~~~~~~~~~~~~~~~ 158 (365) T 2z04_A 94 IREKLFLKKHGFPVPEFLVIKRDEI-IDALKSFKLPV-VIKAEKLGYDGK-------------GQYRIKKLEDANQVVKN 158 (365) T ss_dssp HHHHHHHHTTTCCCCCEEEC---------------CE-EEECC------------------------------------- T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHCCCCC-EEEEECCCCCCC-------------CCEEEEEHHHHHHHHHH T ss_conf 9999754303997211123325665-42222105662-367501221289-------------85699734566677664 Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCC Q ss_conf 61876544212222244330110345556505899999834778 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSG 129 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~ 129 (398) ..+ -..+++|++++..+|+=+-+.+|.... T Consensus 159 ~~~--------------~~~~ivEe~i~~~~Eisv~v~rd~~g~ 188 (365) T 2z04_A 159 HDK--------------EESFIIEEFVKFEAEISCIGVRDREGK 188 (365) T ss_dssp --------------------CEEEECCCCSEEEEEEEEECTTCC T ss_pred HCC--------------CCCEEEEEEECCCEEEEEEEEECCCCC T ss_conf 037--------------887899984147368889999818998 No 56 >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8 d.142.1.9 Probab=96.76 E-value=0.0004 Score=45.40 Aligned_cols=92 Identities=12% Similarity=-0.024 Sum_probs=61.8 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398) -...|++|.+.|||+|+...... .+++||+ ++|+.--.||| |+.++.|.+++....+ T Consensus 99 k~~~~~~l~~~GIp~p~~~~~~~--------~~ig~PV-iVKp~~g~GGr--------------G~~iv~~~eel~~~~~ 155 (320) T 2pbz_A 99 FELQDKALEGAGIPRVEVVEPED--------AKPDELY-FVRIEGPRGGS--------------GHFIVEGSELEERLST 155 (320) T ss_dssp HHHHHHHHHHHTCCBCCBCCSCC--------CCSSCCE-EEECC--------------------------CEECSCCCC- T ss_pred HHHHHHHHHHCCCCCCCCCCCCH--------HCCCCCE-EEEECCCCCCC--------------EEEEEECHHHHHHHHH T ss_conf 99999999976999765445310--------0268747-99975578873--------------0699828799999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEEC Q ss_conf 86187654421222224433011034555650589999983477804899844 Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAST 137 (398) Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~ 137 (398) ....+.+++.++. .||++-...|+......+++.. T Consensus 156 -----------------~~~~~~ie~~v~g-~~~~~~~~~~~~~~~~~i~~~~ 190 (320) T 2pbz_A 156 -----------------LEEPYRVERFIPG-VYLYVHFFYSPILERLELLGVD 190 (320) T ss_dssp --------------------CCEEEECCCS-CEEEEEEEEETTTTEEEEEEEE T ss_pred -----------------HHHHHHHHCCCCC-HHEEEEEEEEEEEECCCCEEEE T ss_conf -----------------9998876502667-2038886664124044314875 No 57 >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens} Probab=96.55 E-value=0.00033 Score=45.98 Aligned_cols=94 Identities=11% Similarity=-0.100 Sum_probs=60.2 Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHH----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 7999999998689888815747999----999999872998699971213687656565567777777079958999999 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVH----AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVI 80 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~----ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~ 80 (398) -+..+.+|+++|+|+|+...+.+.. ........++||+ |+|+ ..|+.|+ ||.++.+.++.. T Consensus 131 K~~~~~~L~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~Pv-vvKp--~~g~~G~------------Gv~~v~~~~~l~ 195 (344) T 2p0a_A 131 KPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPV-VVKL--GHAHAGM------------GKIKVENQLDFQ 195 (344) T ss_dssp HHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTTCCCCSSSSE-EEEE--SSCCTTT------------TEEEECSHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE-EEEE--CCCCCCC------------CEEEECCHHHHH T ss_conf 999999999749999997411131324567777630369988-9997--9878877------------437744878866 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC Q ss_conf 99998618765442122222443301103455565058999998347 Q gi|254781049|r 81 SDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398) Q Consensus 81 ~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398) ++...++... ..+++|++++.. |.+..++.+.. T Consensus 196 ~~~~~~~~~~-------------~~v~ve~fi~~~-~d~rv~vig~~ 228 (344) T 2p0a_A 196 DITSVVAMAK-------------TYATTEAFIDSK-YDIRIQKIGSN 228 (344) T ss_dssp HHHHHHHHHT-------------CCEEEEECCCEE-EEEEEEEETTE T ss_pred HHHHHHHCCC-------------CEEEEEECCCCC-EEEEEEEECCE T ss_conf 6776542256-------------417875022764-89999998992 No 58 >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Probab=96.28 E-value=0.0096 Score=36.32 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=41.6 Q ss_pred HHHHHHHHHHCCCCCCCCEEECC---------HHHHHHHH--HHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 79999999986898888157479---------99999999--87299869997121368765656556777777707995 Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISS---------VHAAESAI--KTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVE 73 (398) Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s---------~~ea~~~a--~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~ 73 (398) =+..+++|++.|+|+|++.++.. .++..... ..+++|+ |+|+.+-.||.| -|+.++ T Consensus 117 K~~~~~~l~~~~ip~p~~~v~~~~~~~~~~~~~~e~~~~~~~~~l~~P~-VvKP~~a~g~~s------------~g~~iv 183 (346) T 2q7d_A 117 RSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPF-ICKTRVAHGTNS------------HEMAIV 183 (346) T ss_dssp HHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSE-EEECSBCSSTTC------------CEEEEE T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCE-EEECCCCCCCCC------------CCEEEE T ss_conf 9999999997699999915867874212454531489999750646874-896774799876------------642898 Q ss_pred CCHHHHH Q ss_conf 8999999 Q gi|254781049|r 74 SSLKSVI 80 (398) Q Consensus 74 ~s~~ea~ 80 (398) .+.+++. T Consensus 184 ~~~~~l~ 190 (346) T 2q7d_A 184 FNQEGLN 190 (346) T ss_dssp CSGGGTT T ss_pred ECCHHHH T ss_conf 3510322 No 59 >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Probab=96.11 E-value=0.0022 Score=40.51 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=33.9 Q ss_pred HCCCCCCCCEEECCHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCC Q ss_conf 8689888815747999--99999987299869997121368765656556777777707995899999999998618765 Q gi|254781049|r 14 KYNVPVAKGVVISSVH--AAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIREILGSTL 91 (398) Q Consensus 14 ~~GIpvp~g~~a~s~~--ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ilg~~l 91 (398) ..++|.|+..+++..+ +.......++||+ |||+ ..|+.|+ ||.+++|.+++.+..+.++... T Consensus 237 ~~~l~~p~~~li~~~~~~~~~~~~~~~~~Pv-VVKp--~~g~~G~------------Gv~~V~~~~el~~~~~~~~~~~- 300 (422) T 1pk8_A 237 HKKLGTEEFPLIDQTFYPNHKEMLSSTTYPV-VVKM--GHAHSGM------------GKVKVDNQHDFQDIASVVALTK- 300 (422) T ss_dssp HHHHCTTTSCBCCCEEESSGGGCCCCSSSSE-EEEE--SSCCTTT------------TEEEECSHHHHHHHHHHHHHHT- T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHCCCCEE-EEEE--CCCCCCC------------CEEEECCCCHHHHHHHHHHHHC- T ss_conf 2779999600035321256777654148729-9975--7878778------------8899779217999999998618- Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCEEEE Q ss_conf 4421222224433011034555650589 Q gi|254781049|r 92 ITKQTGPTGSRVNCVYVEDGADILRELY 119 (398) Q Consensus 92 ~t~qt~~~G~~v~~vLVEe~v~~~~E~y 119 (398) ..+++||+++..+++- T Consensus 301 ------------~~v~vEefI~~~~dir 316 (422) T 1pk8_A 301 ------------TYATAEPFIDAKYDVR 316 (422) T ss_dssp ------------SCEEEEECCCEEEEEE T ss_pred ------------CEEEEEECCCCCEEEE T ss_conf ------------8499996257867999 No 60 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=95.99 E-value=0.085 Score=30.10 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=84.4 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 88179995550368999999996589962488427888989999999998619986589996358613289999999999 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSA 345 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a 345 (398) .|.||++.--++++.+.++.....|.--.-|.-+|+.++ -.+..+++.+..||++++|++- .-|+-+-....+..-.| T Consensus 149 ~G~ialvsqSG~l~~~i~~~~~~~g~G~s~~vs~Gn~~~-v~~~d~l~~l~~D~~t~~I~l~-~E~~~~~~~f~~aa~~a 226 (457) T 2csu_A 149 KGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-VDFAELMEYLADTEEDKAIALY-IEGVRNGKKFMEVAKRV 226 (457) T ss_dssp ECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCS-SCHHHHHHHHTTCSSCCEEEEE-ESCCSCHHHHHHHHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHCCCCCCCEEEEE-EECCCCHHHHHHHHHHH T ss_conf 997799966725999999999964888148983488678-7889999996069987479999-95575578999999998 Q ss_pred HHHCCCCCCEEEECCCCCHHHH-----------------HHHHHHCCCCEEEECCHHHHHHHHHHH Q ss_conf 9972999879997489858999-----------------999997699589949989999999998 Q gi|254781049|r 346 VKEVKINIPLVMRLEGANVDIG-----------------NRLIAESGLNVITAIDLDDAAQKIVHA 394 (398) Q Consensus 346 ~~~~~~~~pivvRl~Gtn~~~g-----------------~~il~~~g~~~~~~~~~~~A~~~~v~~ 394 (398) .+ ++|+|+=..|....-+ ...++.+| +..+++++|...-+--+ T Consensus 227 ~~----~kpvvvlk~Grs~~g~~aa~shtgalag~~~~~~a~~~~~G--vv~v~~~~el~d~~~~l 286 (457) T 2csu_A 227 TK----KKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSG--VLVANTIDEMLSMARAF 286 (457) T ss_dssp HH----HSCEEEEECC------------------CHHHHHHHHHHTT--CEEESSHHHHHHHHTTT T ss_pred HC----CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHH T ss_conf 66----89989995777765532213555434573899999999559--87279999999999996 No 61 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=95.79 E-value=0.1 Score=29.55 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=64.3 Q ss_pred EEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC Q ss_conf 884278889899999999-9861998658999635861328999999999999729998799974898589999999976 Q gi|254781049|r 296 FLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAES 374 (398) Q Consensus 296 FlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~ 374 (398) ....-+..+.+..++.++ ++-++|++++|+ ..+|.+|.|+++|+++.+.+.|.++-..|+... ...++.. T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-------~~~D~~A~g~~~al~~~g~~~~~~v~~dg~~~~--~~~i~~g 240 (293) T 3l6u_A 170 VDSVSGNYDPVTSERVMRQVIDSGIPFDAVY-------CHNDDIAMGVLEALKKAKISGKIVVGIDGNRAI--LEAVDMK 240 (293) T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHHHHHHHHHHHTTCCCCEEEEEECCHHH--HHHHHTT T ss_pred EHHHHCCCCHHHHHHHHHHHHCCCCCCEEEE-------ECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHH--HHHHHCC T ss_conf 0111000004778999998742289961999-------788189999999999769999979999796699--9999839 Q ss_pred CCCEEEECCHHHHHHHHHHHHH Q ss_conf 9958994998999999999850 Q gi|254781049|r 375 GLNVITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 375 g~~~~~~~~~~~A~~~~v~~~k 396 (398) -.......+..+..+.++++.. T Consensus 241 ~~~~tv~~~~~~~g~~a~~~l~ 262 (293) T 3l6u_A 241 SMDATVVQSAEEMMKVAFSALK 262 (293) T ss_dssp SSCEEEECCHHHHHHHHHHHHH T ss_pred CCEEEEECCHHHHHHHHHHHHH T ss_conf 9759995799999999999999 No 62 >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A* Probab=93.71 E-value=0.35 Score=26.04 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=63.8 Q ss_pred CCCCCHHHHHHH-HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE Q ss_conf 788898999999-9998619986589996358613289999999999997299987999748985899999999769958 Q gi|254781049|r 300 GGGADQDKVAAA-FKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNV 378 (398) Q Consensus 300 gG~a~~e~~~~a-~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~ 378 (398) .+..+.+.-++. ..++.++|++++|| ...|.+|.|+++|+++.+.+.+++|=..+ ..+..+.+++..+.. T Consensus 168 ~~~~~~~~~~~~~~~~l~~~p~~daI~-------~~~d~~a~ga~~Al~~~g~~~~~~v~~d~--~~~~~~~i~~G~~~~ 238 (316) T 1tjy_A 168 FGYNDATKSLQTAEGIIKAYPDLDAII-------APDANALPAAAQAAENLKRNNLAIVGFST--PNVMRPYVQRGTVKE 238 (316) T ss_dssp ECTTCHHHHHHHHHHHHHHCSSCCEEE-------ECSTTHHHHHHHHHHHTTCCSCEEEEBCC--HHHHHHHHHHTSCSE T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCEEEEECC--CHHHHHHHHCCCCEE T ss_conf 314678899999999996499984899-------89868999999999967989988999848--499999998499559 Q ss_pred EEECCHHHHHHHHHHHH Q ss_conf 99499899999999985 Q gi|254781049|r 379 ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~~ 395 (398) ....+..+....+++++ T Consensus 239 t~~~~~~~~G~~a~~~~ 255 (316) T 1tjy_A 239 FGLWDVVQQGKISVYVA 255 (316) T ss_dssp EEECCHHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHH T ss_conf 99479999999999999 No 63 >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=91.86 E-value=0.5 Score=25.01 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=68.6 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..|.+..+|-+.....-..+..+.+..+++++-++ +.|++.+|+. ..|.+|.|+++++++.+..+| -|+ T Consensus 141 f~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~-------~~d~~a~g~~~al~~~g~~vp~~i~vv 213 (276) T 2h0a_A 141 FQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFA-------GADQVALGVLEEAVRLGLTPGRDVRVL 213 (276) T ss_dssp HHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEEC-------SSHHHHHHHHHHHHTTSCTTTTSEEEE T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCCCCCEE T ss_conf 9999998099977101111111115799999998863567768996-------777999999999998699889653114 Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 74898589999999976995899499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) -..++..- +...+. ....+..+.++++|++. T Consensus 214 g~D~~~~~------~~~~lt-ti~~~~~~~g~~av~~l 244 (276) T 2h0a_A 214 GFDGHPFA------EEAGLS-TIAQPVEAMGARAAQLL 244 (276) T ss_dssp EESCCTHH------HHHTCE-EEECCHHHHHHHHHHHH T ss_pred ECCCCHHH------CCCCCE-EEEECHHHHHHHHHHHH T ss_conf 22783887------388962-99829999999999999 No 64 >2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} Probab=91.21 E-value=0.73 Score=23.95 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=61.4 Q ss_pred ECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCC Q ss_conf 4278889899999999986-199865899963586132899999999999972999879997489858999999997699 Q gi|254781049|r 298 DVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGL 376 (398) Q Consensus 298 D~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~ 376 (398) ...+..+.+..+++++-+| ++|.+.+|+. ..|.+|.|+++++++.+++-+.|+=..++... ...+.+... T Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~~~~~~~~~~g~~dv~ivg~d~~~~~--~~~~~~~~~ 230 (283) T 2ioy_A 160 KQAADFDRSKGLSVMENILQAQPKIDAVFA-------QNDEMALGAIKAIEAANRQGIIVVGFDGTEDA--LKAIKEGKM 230 (283) T ss_dssp EEECTTCHHHHHHHHHHHHHHCSCCCEEEE-------SSHHHHHHHHHHHHHTTCCCCEEEEEECCHHH--HHHHHTTSC T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCEEEEECCCHHH--HHHHHCCCC T ss_conf 853763379999999999955989978996-------88299999999999809998889997896899--998745996 Q ss_pred CEEEECCHHHHHHHHHHHH Q ss_conf 5899499899999999985 Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398) -.....+..+...+++++. T Consensus 231 ~~tv~~~~~~~G~~A~~~l 249 (283) T 2ioy_A 231 AATIAQQPALMGSLGVEMA 249 (283) T ss_dssp CEEEECCHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHH T ss_conf 2899539999999999999 No 65 >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Probab=89.75 E-value=0.25 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=42.9 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 99999999868988881574799999999987299869997121368765656556777777707995899999999998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIRE 85 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~~ 85 (398) +..++.|+ .++|+|+... ..+++|+ |+|+.--+||+| |.++.+.+ T Consensus 112 ~~t~~~L~-~~~~~p~~~~-----------~~~~~p~-VvKP~~G~gg~g--------------v~~~~~~~-------- 156 (305) T 3df7_A 112 WELYKKLR-GEVQVPQTSL-----------RPLDCKF-IIKPRTACAGEG--------------IGFSDEVP-------- 156 (305) T ss_dssp HHHHHHHT-TTSCCCCEES-----------SCCSSSE-EEEESSCC------------------CBCCSSCC-------- T ss_pred HHHHHHHH-CCCCCCCCCH-----------HHCCCCE-EEEECCCCCCCC--------------EEEECCCC-------- T ss_conf 99999996-5799997131-----------0059858-997189999865--------------39860676-------- Q ss_pred HCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC Q ss_conf 618765442122222443301103455565058999998347 Q gi|254781049|r 86 ILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398) Q Consensus 86 ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398) +.++|||.++ +.|+-+++..|.. T Consensus 157 ------------------~~~ivQeyi~-G~e~sv~~~~~~~ 179 (305) T 3df7_A 157 ------------------DGHIAQEFIE-GINLSVSLAVGED 179 (305) T ss_dssp ------------------TTEEEEECCC-SEEEEEEEEESSS T ss_pred ------------------CCCEEEEEEC-CCEEEEEEEECCC T ss_conf ------------------0010014647-7206999990893 No 66 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=89.37 E-value=1 Score=22.95 Aligned_cols=106 Identities=11% Similarity=0.082 Sum_probs=72.3 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCC---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 99999996589962488427888989999999998619---986589996358613289999999999997299987999 Q gi|254781049|r 281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSD---SSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVM 357 (398) Q Consensus 281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~---~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivv 357 (398) ..++.+..+|.++-.+-..-+..+.+..+++++-++.. |++.+|+ .--|.+|.|+++|+++.+.+...|+ T Consensus 161 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-------~~~d~~a~g~~~al~~~g~~~i~v~ 233 (309) T 2fvy_A 161 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI-------ANNDAMAMGAVEALKAHNKSSIPVF 233 (309) T ss_dssp HHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEE-------ESSHHHHHHHHHHHHHTTCTTSCEE T ss_pred HHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEE-------ECCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 788768760987314578730210167899999997434468864476-------2685788999999998299997699 Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 74898589999999976995899499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) =..| ..+..+.+++..+......+..+-...+|+++ T Consensus 234 g~D~--~~~~~~~i~~g~i~~tv~q~~~~~G~~av~~~ 269 (309) T 2fvy_A 234 GVDA--LPEALALVKSGALAGTVLNDANNQAKATFDLA 269 (309) T ss_dssp CSBC--CHHHHHHHHHTSSCBEEECCHHHHHHHHHHHH T ss_pred EECC--CHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 9779--89999998759955999179999999999999 No 67 >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Probab=88.95 E-value=1.1 Score=22.75 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=13.3 Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 999999769958994998999999999850 Q gi|254781049|r 367 GNRLIAESGLNVITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 367 g~~il~~~g~~~~~~~~~~~A~~~~v~~~k 396 (398) ...++++.+.+++.++|.++|++++.+.++ T Consensus 108 ~~~~~~~~~~~~~~~~d~~eai~~l~~~a~ 137 (163) T 3mvn_A 108 VSEVLANLAQPAISADDVDELVMRIVQQAK 137 (163) T ss_dssp HHHHHTTCCSCEEEESSHHHHHHHHHHHCC T ss_pred HHHHHHHCCCCEEEECCHHHHHHHHHHHCC T ss_conf 688987504682996589999999998679 No 68 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=88.43 E-value=1.2 Score=22.53 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=66.1 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 9999996589962488427888989999999998-619986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKII-TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~i-l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..+....+|...-...-+.+..+.+..+.+++-+ ...|++.+|| ...|.+|.|+.+++++.+.++| -|+ T Consensus 150 f~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~dv~vi 222 (290) T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-------CANDTMAVSALARFQQLGISVPGDVSVI 222 (290) T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEE T ss_pred HHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 888899709986502201468888999999975200256763388-------5373888889999998699899961899 Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 74898589999999976995899499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) -..++..- +.+ ..++.. ...+..+.++.++++. T Consensus 223 g~d~~~~~---~~~-~p~ltt-i~~~~~~~g~~av~~L 255 (290) T 2rgy_A 223 GYDDDYSA---AYA-APALTS-VHIPTAELTQNAVRWL 255 (290) T ss_dssp EEECCTTS---TTS-SSCCEE-EECCHHHHHHHHHHHH T ss_pred EECCHHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 97983899---824-899459-9949999999999999 No 69 >1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A Probab=88.35 E-value=0.52 Score=24.91 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH-HHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCCC-EEEE Q ss_conf 899999999986199865899963586132899999999-999972-9998799974898589999999976995-8994 Q gi|254781049|r 305 QDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGIL-SAVKEV-KINIPLVMRLEGANVDIGNRLIAESGLN-VITA 381 (398) Q Consensus 305 ~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii-~a~~~~-~~~~pivvRl~Gtn~~~g~~il~~~g~~-~~~~ 381 (398) .+.+++.+.-.+..+..+.+.++ |.+...+|--+-+.+ .+.++. ..+. -+.+.|.|.+ -+++++.+|+. +..+ T Consensus 26 a~~l~~~l~~~~~~~~~~~vilD-ls~v~~idssgl~~L~~~~~~~~~~~~--~l~l~~~~~~-v~~~l~~~gl~~~~~~ 101 (117) T 1h4x_A 26 VEQIRAKISTAIFQGAVTTIIWN-FERLSFMDSSGVGLVLGRMRELEAVAG--RTILLNPSPT-MRKVFQFSGLGPWMMD 101 (117) T ss_dssp HHHHHHHHHHHHHHTSCSEEEEE-EEEEEEECTHHHHHHHHHHHHHHTTTC--EEEEESCCHH-HHHHHHHTTCGGGEEC T ss_pred HHHHHHHHHHHHHCCCCCEEEEE-EECCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCHH-HHHHHHHCCCCEEEEE T ss_conf 99999999999953999689999-726876476999999999999986899--8999969989-9999998399848967 Q ss_pred CCHHHHHHHH Q ss_conf 9989999999 Q gi|254781049|r 382 IDLDDAAQKI 391 (398) Q Consensus 382 ~~~~~A~~~~ 391 (398) .+-+||.+.+ T Consensus 102 ~t~eeAl~~l 111 (117) T 1h4x_A 102 ATEEEAIDRV 111 (117) T ss_dssp SCHHHHHHHT T ss_pred CCHHHHHHHH T ss_conf 9999999998 No 70 >2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* Probab=88.34 E-value=1.2 Score=22.49 Aligned_cols=88 Identities=17% Similarity=0.091 Sum_probs=62.7 Q ss_pred CCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 27888989999999998-61998658999635861328999999999999729998799974898589999999976995 Q gi|254781049|r 299 VGGGADQDKVAAAFKII-TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLN 377 (398) Q Consensus 299 ~gG~a~~e~~~~a~~~i-l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~ 377 (398) ..+..+.+..+.++.-+ .+.|++.+++. ..|.+|.|+++|+++.+++.+.++-..++... .+.+++-... T Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~~i~i~g~d~~~~~--~~~i~~g~~~ 239 (290) T 2fn9_A 169 QSAEFDRDTAYKVTEQILQAHPEIKAIWC-------GNDAMALGAMKACEAAGRTDIYIFGFDGAEDV--INAIKEGKQI 239 (290) T ss_dssp EECTTCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHHHHHHHHHTTCTTCEEECCBCCHHH--HHHHHTTCSE T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEEE-------CCHHHHHHHHHHHHHHCCCCCEEECCCCCHHH--HHHHHCCCCC T ss_conf 21567888988899999862446449998-------78299999999999849976746066797999--9999809986 Q ss_pred EE-EECCHHHHHHHHHHHH Q ss_conf 89-9499899999999985 Q gi|254781049|r 378 VI-TAIDLDDAAQKIVHAV 395 (398) Q Consensus 378 ~~-~~~~~~~A~~~~v~~~ 395 (398) +. ...+..+..+++|+++ T Consensus 240 ~~ti~q~~~~~G~~av~~l 258 (290) T 2fn9_A 240 VATIMQFPKLMARLAVEWA 258 (290) T ss_dssp EEEEECCHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHH T ss_conf 6998449999999999999 No 71 >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} Probab=87.40 E-value=0.75 Score=23.87 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=64.0 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999-98619986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..+.+..+|..+-...-..+..+.+..++++. ++...|++.+|| +.+|.+|.|+++++++.+.++| -|+ T Consensus 147 f~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~D~~A~g~~~al~~~g~~vP~di~vi 219 (291) T 3egc_A 147 FRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-------TSSHRITEGAMQALNVLGLRYGPDVEIV 219 (291) T ss_dssp HHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-------ESSHHHHHHHHHHHHHHTCCBTTTBEEE T ss_pred HHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEE-------CCCHHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 999999849984321123677645579999999985599985101-------1578999879999998389889986899 Q ss_pred ECCCCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHH Q ss_conf 74898589999999976--995899499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAES--GLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~--g~~~~~~~~~~~A~~~~v~~~ 395 (398) =..++.. .+.. .+.- ...+..+..++|+++. T Consensus 220 g~D~~~~------~~~~~p~ltt-v~~~~~~ig~~A~~~l 252 (291) T 3egc_A 220 SFDNLPW------MAFLDPPLPV-VEQPTRRIGQEAMRML 252 (291) T ss_dssp EESCCGG------GGGSSSCCCE-EECCHHHHHHHHHHHH T ss_pred EECCHHH------HHHCCCCCEE-EECCHHHHHHHHHHHH T ss_conf 9678699------9820899669-9839999999999999 No 72 >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Probab=86.95 E-value=1.4 Score=22.17 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=47.0 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEC--CCCH-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH Q ss_conf 8889899999999986199865899963--5861-32899999999999972999879997489858999 Q gi|254781049|r 301 GGADQDKVAAAFKIITSDSSVKGILINI--FGGI-MRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIG 367 (398) Q Consensus 301 G~a~~e~~~~a~~~il~~~~vk~iliNi--fGGI-~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g 367 (398) |....+.+.+.++-...|++||+|++.| -||- +.++.+++.|..+ ++ .++|||+-+.+.-+.-| T Consensus 320 ~~~~~~~~~~~l~~a~~d~~vkavvLrInSpGGs~~as~~i~~~i~~~-k~--~~KPVv~~~~~~aASgg 386 (593) T 3bf0_A 320 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA-RA--AGKPVVVSMGGMAASGG 386 (593) T ss_dssp TSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHH-HH--TTCCEEEEEEEEEETHH T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH-HH--CCCCEEEEECCCCCHHH T ss_conf 876617889999866507542179999979898577899999999999-85--49978999878664155 No 73 >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Probab=86.85 E-value=1.5 Score=21.93 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=72.9 Q ss_pred CEEEEECCCHH------HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH------CCCCCCEEEEECCCCHHHH Q ss_conf 17999555036------89999999965899624884278889899999999986------1998658999635861328 Q gi|254781049|r 268 NIGCMVNGAGL------AMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT------SDSSVKGILINIFGGIMRC 335 (398) Q Consensus 268 ~Ig~~vnGaGl------amatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il------~~~~vk~iliNifGGI~~c 335 (398) +|+++...... .....+.+..+|.+.....-+.+..+.+.-+.+++-++ ..+.+.+|+ ..+ T Consensus 133 ~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-------~~~ 205 (303) T 3kke_A 133 RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-------VAS 205 (303) T ss_dssp SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-------ESS T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-------ECC T ss_conf 5764158876607999999999999985998542230245666667999999999854431257984899-------667 Q ss_pred HHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 9999999999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 336 DVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 336 d~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |.+|.|+++++++.+.++| -|+-..++... +.+ ...+. ....+..+.+++++++. T Consensus 206 d~~a~g~~~al~~~g~~vp~dv~vig~d~~~~~---~~~-~p~lt-ti~~~~~~~g~~a~~~L 263 (303) T 3kke_A 206 VNAAVGALSTALRLGLRVPEDLSIVGINTTWVS---DTV-YPALT-TVRLPLQRLGEVAADVL 263 (303) T ss_dssp HHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHH---HHS-SSCCE-EEECCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHH---HHC-CCCCE-EEEECHHHHHHHHHHHH T ss_conf 788999999999839865556169975787899---724-89956-99829999999999999 No 74 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=86.79 E-value=1.5 Score=21.91 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=77.0 Q ss_pred CCEEEEECCCHHHHH------HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHH Q ss_conf 817999555036899------999999658996248842788898999999999861-9986589996358613289999 Q gi|254781049|r 267 GNIGCMVNGAGLAMA------TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLV 339 (398) Q Consensus 267 G~Ig~~vnGaGlama------tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA 339 (398) .+|+++....+.... ..+..+.+|.+.....-+.+..+.+..+...+.++. .+...+|| ..+|.+| T Consensus 182 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-------~~~d~~a 254 (338) T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMA 254 (338) T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHH T ss_conf 659999689887569999999999999859986653241378746779999887641487774014-------2689999 Q ss_pred HHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 999999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 340 KGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 340 ~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) .|+++++++.++++| -|+-..++..-+ .+ ...+. ....+.++-++.|+++. T Consensus 255 ~g~~~~l~~~g~~iP~DisIigfd~~~~~~---~~-~p~lt-ti~~~~~~~g~~Av~~L 308 (338) T 3dbi_A 255 IGAMKALHERGVAVPEQVSVIGFDDIAIAP---YT-VPALS-SVKIPVTEMIQEIIGRL 308 (338) T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCTTGG---GS-SSCCE-EEECCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHH---HC-CCCCE-EEEECHHHHHHHHHHHH T ss_conf 999999997599889875999978837988---23-89962-99809999999999999 No 75 >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=86.16 E-value=1.6 Score=21.69 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=77.5 Q ss_pred CEEEEECCCHHHH------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHH Q ss_conf 1799955503689------9999999658996248842788898999999999861-99865899963586132899999 Q gi|254781049|r 268 NIGCMVNGAGLAM------ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVK 340 (398) Q Consensus 268 ~Ig~~vnGaGlam------atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~ 340 (398) +|+++....+.+. ...+.++.+|..+-.+.-..+..+.+..+++++-++. .+++.+|+. ..|.+|. T Consensus 129 ~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~ 201 (288) T 3gv0_A 129 RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVS-------ISGSSTI 201 (288) T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEE-------SCHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-------CCHHHHH T ss_conf 089964875432387888999999998399856233113310023678999998642257752344-------6669999 Q ss_pred HHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 99999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 341 GILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 341 gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+++++++.+.++| -|+=..++..- +.+ ...+.. ...+..+..++++++. T Consensus 202 ~~~~~l~~~g~~vP~dv~iigfd~~~~~---~~~-~p~ltt-i~~~~~~~g~~a~~~l 254 (288) T 3gv0_A 202 ALVAGFEAAGVKIGEDVDIVSKQSAEFL---NWI-KPQIHT-VNEDIKLAGRELAKAL 254 (288) T ss_dssp HHHHHHHTTTCCTTTSCEEEEEESSTTH---HHH-CTTSEE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 9999999849988985189997782899---826-998469-9979999999999999 No 76 >1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Probab=85.54 E-value=0.69 Score=24.11 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=33.1 Q ss_pred HHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCC Q ss_conf 9999986898888157479999999998729986999712136876 Q gi|254781049|r 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGR 54 (398) Q Consensus 9 K~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgR 54 (398) |-+..+++.++|+..++++.+++....++-+ | +|+|.--.+||| T Consensus 125 Kl~~~~~~~~~p~T~v~~~~~~~~~~~~~~~-~-~V~Kpl~g~~G~ 168 (316) T 1gsa_A 125 KLFTAWFSDLTPETLVTRNKAQLKAFWEKHS-D-IILKPLDGMGGA 168 (316) T ss_dssp TGGGGGGTTTSCCEEEESCHHHHHHHHHHHS-S-EEEECSSCCTTT T ss_pred HHHHHHCCCCCCCCEEECCHHHHHHHHHHCC-C-CCCCCCCCCCCC T ss_conf 7777642467899537635666599997146-6-211225678888 No 77 >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Probab=84.11 E-value=2 Score=21.08 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=65.4 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..+.+..+|.++..+ .+.+..+.+..+++++-++ ..|++.+||. ..|.+|.|+++++++.++++| -|+ T Consensus 138 f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~iP~dv~vv 209 (280) T 3gyb_A 138 FEATMRAHGLEPLSN-DYLGPAVEHAGYTETLALLKEHPEVTAIFS-------SNDITAIGALGAARELGLRVPEDLSII 209 (280) T ss_dssp HHHHHHHTTCCCEEC-CCCSCCCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHHHHHHHHHHTCCTTTTCEEE T ss_pred HHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCHHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 877899729974201-013445377889999999853899838995-------688999999999998799899876999 Q ss_pred ECCCCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHH Q ss_conf 748985899999999769958-99499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNV-ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~-~~~~~~~~A~~~~v~~~ 395 (398) -..++..- +....++ ....+..+..++|+++. T Consensus 210 g~d~~~~~------~~~~p~lttv~~~~~~ig~~av~~l 242 (280) T 3gyb_A 210 GYDNTPLA------QTRLINLTTIDDNSIGVGYNAALLL 242 (280) T ss_dssp EESCCHHH------HSTTTCCCEEECCHHHHHHHHHHHH T ss_pred EECCHHHH------HCCCCCCEEEEECHHHHHHHHHHHH T ss_conf 98981898------7048982599859999999999999 No 78 >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Probab=84.05 E-value=2 Score=21.07 Aligned_cols=105 Identities=17% Similarity=0.102 Sum_probs=56.7 Q ss_pred HHHHHHCCCCCCEEEE-CCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC--EEEE Q ss_conf 9999965899624884-278889899999999986-19986589996358613289999999999997299987--9997 Q gi|254781049|r 283 MDIIKLYGGAPANFLD-VGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP--LVMR 358 (398) Q Consensus 283 mD~i~~~Gg~pANFlD-~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p--ivvR 358 (398) ++.++.+|....+.+. ..+..+.+...++++.++ .+|+++..+| +...|.+|.|+++|+++.+.+.| +++= T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-----~~~~d~~a~g~~~al~~~G~~~~~~~~vg 230 (306) T 8abp_A 156 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI-----VGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306) T ss_dssp HHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEE-----ECSSHHHHHHHHHHHHHTTCCGGGEEEEE T ss_pred HHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 9999970998632001224451467999999998864888874443-----44543999999999998599999879999 Q ss_pred CCCCCHHHHHHHHHHCCCCE--EEECCHHHHHHHHHHH Q ss_conf 48985899999999769958--9949989999999998 Q gi|254781049|r 359 LEGANVDIGNRLIAESGLNV--ITAIDLDDAAQKIVHA 394 (398) Q Consensus 359 l~Gtn~~~g~~il~~~g~~~--~~~~~~~~A~~~~v~~ 394 (398) ..|+.. -..+.+...-.+ ....+..+....++++ T Consensus 231 ~d~~~~--~~~~~~~~~~~~~atv~~~~~~~g~~a~~~ 266 (306) T 8abp_A 231 INGVDA--VSELSKAQATGFYGSLLPSPDVHGYKSSEM 266 (306) T ss_dssp ESSGGG--HHHHTSSSCCSEEEEEECCHHHHHHHHHHH T ss_pred ECCCHH--HHHHHCCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 789589--999747577760699955999999999999 No 79 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=83.51 E-value=2.1 Score=20.92 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=60.7 Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHHCCC Q ss_conf 278889899999999-98619986589996358613289999999999997299-9879997489858999999997699 Q gi|254781049|r 299 VGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKI-NIPLVMRLEGANVDIGNRLIAESGL 376 (398) Q Consensus 299 ~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~-~~pivvRl~Gtn~~~g~~il~~~g~ 376 (398) ..+..+.+..+..++ ++.++|++++|+. ..|.+|.|+++|+++.+. +...|+=..|+. +..+.+++..+ T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~p~~~~I~~-------~~d~~a~g~~~al~~~g~~~~v~vvg~d~~~--~~~~~i~~g~i 235 (305) T 3g1w_A 165 EDGRGDSLHSRRVAHQLLEDYPNLAGIFA-------TEANGGVGVGDAVRLESRAGEIQIISFDTDK--GTLDLVDEGII 235 (305) T ss_dssp EECTTCHHHHHHHHHHHHHHCTTEEEEEE-------SSHHHHHHHHHHHHHTTCTTTSEEEEESCCH--HHHHHHHTTSS T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCCH--HHHHHHHCCCC T ss_conf 14787578899999999850898607995-------5848999999999975999982999948989--99999985995 Q ss_pred CEEEECCHHHHHHHHHHHH Q ss_conf 5899499899999999985 Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398) ......+.......+++++ T Consensus 236 ~atv~~~~~~~G~~av~~l 254 (305) T 3g1w_A 236 SATLAQGTWNMGYWSLTYL 254 (305) T ss_dssp CEEEEECHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHH T ss_conf 6999289999999999999 No 80 >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} Probab=82.76 E-value=2.2 Score=20.73 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=71.1 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) .++.+..+|..+-++....+..+.+.-+++++-++ +.|.+.+|+. .-|.+|.|+++++++.+.++| -|+ T Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A~g~~~~l~~~g~~iP~di~vv 214 (275) T 3d8u_A 142 WQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-------SHEEIAIGALFECHRRVLKVPTDIAII 214 (275) T ss_dssp HHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-------SSHHHHHHHHHHHHHTTCCTTTTCEEE T ss_pred HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE-------CCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 9999997499876168960465305689999999875024432230-------788999999999997388788606999 Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 74898589999999976995899499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) -..|+... +.+ ...+.. ...+..+..++++++. T Consensus 215 g~d~~~~~---~~~-~p~ltt-v~~~~~~~g~~av~~l 247 (275) T 3d8u_A 215 CLEGSSMG---EHA-YPSLTS-AEFDYERMGTKAAEKL 247 (275) T ss_dssp ESSCCHHH---HTS-SSCCEE-EECCHHHHHHHHHHHH T ss_pred EECCHHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 97881888---725-898519-9859999999999999 No 81 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=82.47 E-value=2.3 Score=20.66 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=55.4 Q ss_pred CCCCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCC Q ss_conf 788898999999999-8619986589996358613289999999999997299987---999748985899999999769 Q gi|254781049|r 300 GGGADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESG 375 (398) Q Consensus 300 gG~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g 375 (398) -|..+.+..+++++- +.++|++++|| ...|.+|-|.++|+++.+.++| .|+=..++. ++.+.+++-. T Consensus 184 ~~~~~~~~a~~~~~~lL~~~pdi~ai~-------~~nD~~A~Ga~~Al~~~G~~~~~di~vvG~D~~~--~~l~~i~~G~ 254 (350) T 3h75_A 184 YGEWNRERAYRQAQQLLKRYPKTQLVW-------SANDEMALGAMQAARELGRKPGTDLLFSGVNSSP--EALQALIDGK 254 (350) T ss_dssp ECTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCH--HHHHHHHHTS T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCH--HHHHHHHCCC T ss_conf 432568999999999983599980999-------8785999999999997599999995999989859--9999986799 Q ss_pred CCEEEECCHHHHHH Q ss_conf 95899499899999 Q gi|254781049|r 376 LNVITAIDLDDAAQ 389 (398) Q Consensus 376 ~~~~~~~~~~~A~~ 389 (398) +............. T Consensus 255 l~~~~~~~~~~G~~ 268 (350) T 3h75_A 255 LSVLEAGHFTLGGW 268 (350) T ss_dssp SCEEEECGGGHHHH T ss_pred CEEEECCCHHHHHH T ss_conf 63997892899999 No 82 >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Probab=82.00 E-value=2.4 Score=20.55 Aligned_cols=86 Identities=6% Similarity=-0.064 Sum_probs=56.8 Q ss_pred CCCCHHHHHHH-HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHHCCCCE Q ss_conf 88898999999-9998619986589996358613289999999999997299-987999748985899999999769958 Q gi|254781049|r 301 GGADQDKVAAA-FKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKI-NIPLVMRLEGANVDIGNRLIAESGLNV 378 (398) Q Consensus 301 G~a~~e~~~~a-~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~-~~pivvRl~Gtn~~~g~~il~~~g~~~ 378 (398) +..+.+..++. .+++.++|++++|+. -.|.+|.|.++|+++.+. +...|+=..++.. ....|++-.+.. T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~i~~i~~-------~~d~~a~ga~~Al~~~g~~~~i~i~g~d~~~~--~~~~i~~G~~~a 232 (313) T 2h3h_A 162 DEEDGARAVSLAEAALNAHPDLDAFFG-------VYAYNGPAQALVVKNAGKVGKVKIVCFDTTPD--ILQYVKEGVIQA 232 (313) T ss_dssp CSSCHHHHHHHHHHHHHHCTTCCEEEE-------CSTTHHHHHHHHHHHTTCTTTSEEEEECCCHH--HHHHHHHTSCSE T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCCCEEEECCCHH--HHHHHHCCCCEE T ss_conf 355476789999999973989848997-------78468999999999779998974799579899--999998699879 Q ss_pred EEECCHHHHHHHHHHHH Q ss_conf 99499899999999985 Q gi|254781049|r 379 ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~~ 395 (398) ....+..+....+|+++ T Consensus 233 tv~q~~~~~G~~av~~l 249 (313) T 2h3h_A 233 TMGQRPYMMGYLSVTVL 249 (313) T ss_dssp EEECCHHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHH T ss_conf 98089999999999999 No 83 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=80.91 E-value=2.6 Score=20.30 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=65.4 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..+....+|.++.-.....+..+.+.....++.++ +.|++.+|| +..|.+|.|+++++++.+..+| -|+ T Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~~l~~~g~~iP~di~vi 233 (296) T 3brq_A 161 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMAIGAMKALHERGVAVPEQVSVI 233 (296) T ss_dssp HHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-------ESSHHHHHHHHHHHHHHTCCTTTTCEEE T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 999999859987610243155452207899999985688874588-------5685999999999997399898642010 Q ss_pred ECCCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHH Q ss_conf 7489858999999997699589-949989999999998 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHA 394 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~ 394 (398) -..++..- +-..-++. ...+..+-.+.++++ T Consensus 234 g~D~~~~~------~~~~p~lttv~~~~~~~g~~a~~~ 265 (296) T 3brq_A 234 GFDDIAIA------PYTVPALSSVKIPVTEMIQEIIGR 265 (296) T ss_dssp EESCCTTG------GGSSSCCEEEECCHHHHHHHHHHH T ss_pred CCCCHHHH------HHCCCCCEEEEECHHHHHHHHHHH T ss_conf 34876889------833898259994999999999999 No 84 >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Probab=80.21 E-value=2.7 Score=20.15 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=59.6 Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHHHCCC Q ss_conf 278889899999999-9861998658999635861328999999999999729998-79997489858999999997699 Q gi|254781049|r 299 VGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINI-PLVMRLEGANVDIGNRLIAESGL 376 (398) Q Consensus 299 ~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~-pivvRl~Gtn~~~g~~il~~~g~ 376 (398) .-+..+.+...+.++ ++..+|++++|+ +..|.+|.|+++|+++.+..- ..++=..++ ++.+..+.+-.+ T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~~d~~a~g~~~al~~~g~~~dv~i~g~d~~--~~~~~~i~~g~i 241 (288) T 1gud_A 171 QPADWDRIKALDVATNVLQRNPNIKAIY-------CANDTMAMGVAQAVANAGKTGKVLVVGTDGI--PEARKMVEAGQM 241 (288) T ss_dssp EECTTCHHHHHHHHHHHHHHCTTCCEEE-------ESSHHHHHHHHHHHHHTTCTTTSEEEEESCC--HHHHHHHHHTSS T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEE-------CCCCHHHHHHHHHHHHCCCCCCEEEEEECCC--HHHHHHHHCCCC T ss_conf 1231246899999998874199860575-------3598899999999997699998499998984--999998654994 Q ss_pred CEEEECCHHHHHHHHHHHH Q ss_conf 5899499899999999985 Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398) ......+..+....|++++ T Consensus 242 ~~ti~~~~~~~G~~A~~~l 260 (288) T 1gud_A 242 TATVAQNPADIGATGLKLM 260 (288) T ss_dssp CEEEECCHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHH T ss_conf 2999379999999999999 No 85 >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} Probab=79.42 E-value=2.9 Score=19.99 Aligned_cols=102 Identities=13% Similarity=0.217 Sum_probs=64.3 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EE Q ss_conf 999999965899624884278889899999999986-19986589996358613289999999999997299987---99 Q gi|254781049|r 281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LV 356 (398) Q Consensus 281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---iv 356 (398) ...+....+|..+-.+.-. +..+.+..+.+++-++ ..|.+.++| ...|.+|.|+++++++.++++| -| T Consensus 146 gf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~~l~~~g~~ip~dv~v 217 (289) T 3k9c_A 146 GFLAAMDRHGLSASATVVT-GGTTETEGAEGMHTLLEMPTPPTAVV-------AFNDRCATGVLDLLVRSGRDVPADISV 217 (289) T ss_dssp HHHHHHHHTTCGGGEEEEC-CCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEE T ss_pred HHHHHHHHCCCCCCCCEEC-CCCCHHHHHHHHHHHHHHCCCCCCCC-------CCHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 7778999819997722111-55656779999999997345866012-------145899999999999859999975442 Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 974898589999999976995899499899999999985 Q gi|254781049|r 357 MRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 357 vRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) +-..++..- ++ -...+. ....+..+.++.+|++. T Consensus 218 i~~d~~~~~---~~-~~p~lt-ti~~~~~~~g~~av~~l 251 (289) T 3k9c_A 218 VGYDDSRLA---RI-PHVQMT-TISQDATHMAEAAVDGA 251 (289) T ss_dssp EEEECCTTT---TC-TTTCCE-EEECCHHHHHHHHHHHH T ss_pred CCCCCHHHH---HC-CCCCCE-EEEECHHHHHHHHHHHH T ss_conf 024877888---62-389835-99959999999999999 No 86 >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Probab=78.29 E-value=3.1 Score=19.77 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.3 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC Q ss_conf 999999658996248842788898999999999-8619986589996358613289999999999997299987999748 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~ 360 (398) ..|.+..+|... .....-+..+.+..+++++- +.+.|++.+|+. .+|.+|-|.++++++.+++.+.++=.. T Consensus 196 f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ai~~-------~~d~~Al~~~~a~~~~~~~~~~vig~d 267 (342) T 1jx6_A 196 FIHQVNRDNNFE-LQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA-------CSTDVALGAVDALAELGREDIMINGWG 267 (342) T ss_dssp HHHHHHHHHCCE-EEEEECCCSSHHHHHHHHHHHHHHCCCCSEEEE-------SSHHHHHHHHHHHHHHTCTTSEEBCSB T ss_pred HHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 999898715687-506983688677899999998750467653552-------373999999999997489988799406 Q ss_pred CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 98589999999976995899499899999999985 Q gi|254781049|r 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 361 Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+... ...+....+......+..+-..++++++ T Consensus 268 ~~~~~--~~~i~~~~~~~ti~q~~~~~G~~a~~~l 300 (342) T 1jx6_A 268 GGSAE--LDAIQKGDLDITVMRMNDDTGIAMAEAI 300 (342) T ss_dssp CCHHH--HHHHHHTSSCEEEEECTHHHHHHHHHHH T ss_pred CCHHH--HHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 98999--9986569962999469999999999999 No 87 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=77.63 E-value=3.3 Score=19.64 Aligned_cols=116 Identities=13% Similarity=0.186 Sum_probs=75.1 Q ss_pred CEEEEECCCHH-------HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 17999555036-------899999999658996248842788898999999999-8619986589996358613289999 Q gi|254781049|r 268 NIGCMVNGAGL-------AMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDVLV 339 (398) Q Consensus 268 ~Ig~~vnGaGl-------amatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~vA 339 (398) +++++..+..- .....+.+..+|....+..-+.+..+.+..++.++- +..+|.+.+|| ..+|.+| T Consensus 179 ~~~~i~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A 251 (332) T 2hsg_A 179 NIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-------VGTDEMA 251 (332) T ss_dssp CEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-------ESSHHHH T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCCHHH T ss_conf 599996587787249999999999999839998800377178987999999999983699995799-------7732999 Q ss_pred HHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 999999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 340 KGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 340 ~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) .|+++|+++.+..+| .|+-..++... +. -...+. ....+..+.++.||++. T Consensus 252 ~g~~~al~~~g~~iP~di~vvg~d~~~~~---~~-~~p~lt-ti~~~~~~~g~~Av~~L 305 (332) T 2hsg_A 252 LGVIHGAQDRGLNVPNDLEIIGFDNTRLS---TM-VRPQLT-SVVQPMYDIGAVAMRLL 305 (332) T ss_dssp HHHHHHHHHTTCCHHHHCEEEEESCCGGG---GS-SSSCCE-EEECCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHH---HH-HCCCCE-EEEECHHHHHHHHHHHH T ss_conf 99999999849999998699997886888---83-089956-99819999999999999 No 88 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=76.46 E-value=3.5 Score=19.44 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=76.5 Q ss_pred CEEEEECCCHHHH-------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHH Q ss_conf 1799955503689-------999999965899624884278889899999999986-19986589996358613289999 Q gi|254781049|r 268 NIGCMVNGAGLAM-------ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLV 339 (398) Q Consensus 268 ~Ig~~vnGaGlam-------atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA 339 (398) +|+++..+..... +..+.++.+|..........+..+.+..+.+...++ ..|...+|| ...|.+| T Consensus 187 ~i~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~-------~~~d~~A 259 (344) T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-------YSNDMIA 259 (344) T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-------ESSHHHH T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCEEE-------CCCHHHH T ss_conf 399991588654117789999999999729965553001377422243024566751586430111-------3888999 Q ss_pred HHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 999999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 340 KGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 340 ~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) .|+++++++.++.+| -|+-..++..- +.+ ...+.- ...+.++.+++||++. T Consensus 260 ~~~~~~l~~~gl~vP~dvsvig~d~~~~~---~~~-~p~ltt-v~~~~~~~g~~Av~~L 313 (344) T 3kjx_A 260 AGGLLYLLEQGIDIPGQIGLAGFNNVELL---QGL-PRKLAT-MDACRLEIGRKAAEII 313 (344) T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCCGGG---GGS-SSCCBE-EBCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCHHHH---HCC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 99999999869999998699997885999---528-999569-9879999999999999 No 89 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=76.29 E-value=3.6 Score=19.41 Aligned_cols=103 Identities=15% Similarity=0.256 Sum_probs=62.5 Q ss_pred HHHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC--EEE Q ss_conf 999999658996-248842788898999999999861-9986589996358613289999999999997299987--999 Q gi|254781049|r 282 TMDIIKLYGGAP-ANFLDVGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP--LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~p-ANFlD~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p--ivv 357 (398) ..+.++.+|.++ .++. +.+..+.+..+++++-+++ .|.+.+|+. .-|.+|.|+++++++.+.++| +-| T Consensus 149 f~~a~~~~g~~~~~~~i-~~~~~~~~~~~~~~~~~l~~~~~~~aii~-------~~d~~a~g~~~al~~~g~~vP~DisV 220 (289) T 3g85_A 149 FIETCHKNGIKISENHI-IAAENSIHGGVDAAKKLMKLKNTPKALFC-------NSDSIALGVISVLNKRQISIPDDIEI 220 (289) T ss_dssp HHHHHHHTTCBCCGGGE-EECCSSHHHHHHHHHHHTTSSSCCSEEEE-------SSHHHHHHHHHHHHHTTCCTTTTCEE T ss_pred HHHHHHHCCCCCCCCEE-EECCCCCHHHHHHHHHHHHCCCCCCEEEC-------CCHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 03678872998663147-40443213578988877631788654331-------78499999999999879866962399 Q ss_pred ECCC-CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 7489-8589999999976995899499899999999985 Q gi|254781049|r 358 RLEG-ANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~G-tn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) -.-| .+.+.. +++ ...+.. ...+..+..++++++. T Consensus 221 ~~igfdd~~~~-~~~-~p~ltt-V~~~~~~~g~~av~~l 256 (289) T 3g85_A 221 VAIGMNDREYT-EFS-TPPVTI-VDIPIEEMAGTCISLV 256 (289) T ss_dssp EEEECSCHHHH-HSS-SSCCEE-EECCHHHHHHHHHHHH T ss_pred EEECCCCHHHH-HHC-CCCEEE-EEECHHHHHHHHHHHH T ss_conf 98477977999-615-898169-9969999999999999 No 90 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=75.34 E-value=3.8 Score=19.24 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=52.7 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHH Q ss_conf 624884278889899999999986----19986589996358613289999999999997299987---99974898589 Q gi|254781049|r 293 PANFLDVGGGADQDKVAAAFKIIT----SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVD 365 (398) Q Consensus 293 pANFlD~gG~a~~e~~~~a~~~il----~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~ 365 (398) +-.+....+..+.+..++.++-++ ..|++++|+ +..|..|.|+++|+++.+.++| .++-..|+- T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~i~ai~-------~~~d~~a~g~~~al~~~G~~~~~di~i~g~D~~~-- 230 (306) T 2vk2_A 160 IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVY-------AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP-- 230 (306) T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEE-------ESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCH-- T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCH-- T ss_conf 8501455221004789999999998732588631587-------3582999999999998399999957999999829-- Q ss_pred HHHHHHHHCCCCEEEECC Q ss_conf 999999976995899499 Q gi|254781049|r 366 IGNRLIAESGLNVITAID 383 (398) Q Consensus 366 ~g~~il~~~g~~~~~~~~ 383 (398) +..+.+++..+......+ T Consensus 231 ~~~~~i~~g~~~~tv~~~ 248 (306) T 2vk2_A 231 DIYKAMMDGEANASVELT 248 (306) T ss_dssp HHHHHHHTTCCCEEEECC T ss_pred HHHHHHHCCCCEEEEECC T ss_conf 999998769966999588 No 91 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=75.26 E-value=3.8 Score=19.23 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=65.8 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECC Q ss_conf 99996589962488427888989999999998619986589996358613289999999999997299987---999748 Q gi|254781049|r 284 DIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLE 360 (398) Q Consensus 284 D~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~ 360 (398) +....++..........+....+......+.+.++|++.+||. ..|.+|.|+.+++++.++++| -++-.. T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~-------~~d~~a~~~~~~l~~~gl~iP~dv~vi~~d 221 (290) T 3clk_A 149 KALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-------ASDMTAIGILNQASSFGIEVPKDLSIVSID 221 (290) T ss_dssp HHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-------SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECC-------CCHHHHHCHHHHHHHHHCCCCCCCHHCCCC T ss_conf 9999859986632245675156569999997522331104414-------776765343899987405686310001558 Q ss_pred CCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHH Q ss_conf 9858999999997699589-949989999999998 Q gi|254781049|r 361 GANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHA 394 (398) Q Consensus 361 Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~ 394 (398) ++... +...-++. ...+..+..+++++. T Consensus 222 ~~~~~------~~~~p~lttv~~~~~~~g~~av~~ 250 (290) T 3clk_A 222 GTEMC------KITRPQLTSISQDFFQMGVTGVQQ 250 (290) T ss_dssp CCTHH------HHSSSCCEEEECCHHHHHHHHHHH T ss_pred CHHHH------HHCCCCCEEEEECHHHHHHHHHHH T ss_conf 76899------832899549980999999999999 No 92 >1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A Probab=75.24 E-value=1.1 Score=22.87 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=51.9 Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH-HHHHCC-CCCCEEEECCCCCHHHHHHHHHHCCCC--E Q ss_conf 898999999999861998658999635861328999999999-999729-998799974898589999999976995--8 Q gi|254781049|r 303 ADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILS-AVKEVK-INIPLVMRLEGANVDIGNRLIAESGLN--V 378 (398) Q Consensus 303 a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~-a~~~~~-~~~pivvRl~Gtn~~~g~~il~~~g~~--~ 378 (398) ++.+..++.+.-.+.++..+.+.++ |.+++.+|--+-+++- +.++.. .+. -+++.|.+.+ =+++++.+|+. + T Consensus 26 ~~a~~l~~~l~~~~~~~~~~~vvlD-~~~v~~iDssgl~~L~~~~~~~~~~g~--~l~l~~~~~~-v~~~l~~~gl~~~~ 101 (110) T 1sbo_A 26 YNSSELKEQLRNFISTTSKKKIVLD-LSSVSYMDSAGLGTLVVILKDAKINGK--EFILSSLKES-ISRILKLTHLDKIF 101 (110) T ss_dssp TTTTHHHHHHHTHHHHCSCSEEEEE-CTTCCCBCHHHHHHHHHHHHHHHHTTC--EEEEESCCHH-HHHHHHHTTCGGGS T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCHH-HHHHHHHCCCCCEE T ss_conf 8989999999999853899789999-469987362799999999999997899--8999929989-99999984998646 Q ss_pred EEECCHHHH Q ss_conf 994998999 Q gi|254781049|r 379 ITAIDLDDA 387 (398) Q Consensus 379 ~~~~~~~~A 387 (398) ..+++.++| T Consensus 102 ~i~~~~~~A 110 (110) T 1sbo_A 102 KITDTVEEA 110 (110) T ss_dssp CBCSSGGGC T ss_pred EEECCHHHC T ss_conf 320896759 No 93 >2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Probab=74.47 E-value=4 Score=19.10 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=65.3 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987---999 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ..+..+.+|.......-.....+.+..+..++.++ +.+.+.+|| ..+|.+|.|+++++++.+.++| .++ T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~vP~di~i~ 228 (289) T 2fep_A 156 YKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-------SATDEMALGIIHAAQDQGLSIPEDLDII 228 (289) T ss_dssp HHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEE T ss_pred HHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 899999849997722277324311448999999995699996587-------4788999999999998599999745996 Q ss_pred ECCCCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHHH Q ss_conf 748985899999999769958-994998999999999850 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNV-ITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~-~~~~~~~~A~~~~v~~~k 396 (398) -+.++..- +...-++ ....+.++.++.+|+++- T Consensus 229 g~d~~~~~------~~~~p~lttv~~~~~~~g~~av~~l~ 262 (289) T 2fep_A 229 GFDNTRLS------LMVRPQLSTVVQPTYDIGAVAMRLLT 262 (289) T ss_dssp EEECCGGG------TSSSSCCEEEECCHHHHHHHHHHHHH T ss_pred CCCCHHHH------HHCCCCCEEEEECHHHHHHHHHHHHH T ss_conf 13882899------82289834998299999999999999 No 94 >2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Probab=72.64 E-value=4.4 Score=18.82 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=67.0 Q ss_pred CCEEEEECCCHHHHHH------HHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 8179995550368999------9999965899624884278889899999999-98619986589996358613289999 Q gi|254781049|r 267 GNIGCMVNGAGLAMAT------MDIIKLYGGAPANFLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLV 339 (398) Q Consensus 267 G~Ig~~vnGaGlamat------mD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA 339 (398) |+|..+....+..... .+.+..++ ..--.....+..+.+..++.++ ++.++|++++|+. .-|.+| T Consensus 129 ~~v~~i~g~~~~~~~~~r~~gf~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~lL~~~pdi~aI~~-------~nD~~a 200 (325) T 2x7x_A 129 GNIVELTGLSGSTPAMERHQGFMAAISKFP-DIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYA-------HNDRIA 200 (325) T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCT-EEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEE-------SSTTHH T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEE-------CCCHHH T ss_conf 428996278875089999999999999779-985366851676548999999997413888877985-------683899 Q ss_pred HHHHHHHHHCCCC-CCEEEECCCC-CHHHHHHHHHHCCCCEEEECC--HHHHHHHHHHHHHC Q ss_conf 9999999972999-8799974898-589999999976995899499--89999999998506 Q gi|254781049|r 340 KGILSAVKEVKIN-IPLVMRLEGA-NVDIGNRLIAESGLNVITAID--LDDAAQKIVHAVKG 397 (398) Q Consensus 340 ~gii~a~~~~~~~-~pivvRl~Gt-n~~~g~~il~~~g~~~~~~~~--~~~A~~~~v~~~k~ 397 (398) .|.++|+++.+.. ...|+=..++ ...++.+.+++..+......+ =..|++.++++.+| T Consensus 201 ~Ga~~Al~~~G~~~~i~vvG~D~~~~~~~~l~~i~~g~i~atv~q~~~G~~av~~~~~~l~G 262 (325) T 2x7x_A 201 PGAYQAAKMAGREKEMIFVGIDALPGKGNGLELVLDSVLDATFIYPTNGDKVLQLAMDILEK 262 (325) T ss_dssp HHHHHHHHHTTCTTSSEEEEEECCCSTTSHHHHHHTTSCSEEEECCCCHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCC T ss_conf 99999999769999939999899745799999987488559996818999999999999779 No 95 >1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A Probab=72.38 E-value=3.6 Score=19.34 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=52.0 Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC--EEE Q ss_conf 98999999999861998658999635861328999999-999999729998799974898589999999976995--899 Q gi|254781049|r 304 DQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKG-ILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLN--VIT 380 (398) Q Consensus 304 ~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~g-ii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~--~~~ 380 (398) +.+...+.+.-.+..+..+.+.++ +.++..+|--+-+ +++..++... ...-+++.|.+. .-+++++.+|+. +.. T Consensus 26 ~~~~l~~~l~~~~~~~~~~~liiD-l~~v~~idssgl~~L~~~~~~~~~-~g~~l~l~~~~~-~v~~~l~~~gl~~~~~i 102 (116) T 1th8_B 26 TAEELREQVTDVLENRAIRHIVLN-LGQLTFMDSSGLGVILGRYKQIKN-VGGQMVVCAVSP-AVKRLFDMSGLFKIIRV 102 (116) T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEE-EEEEEEECHHHHHHHHHHHHHHHH-TTCCEEEESCCH-HHHHHHHHHTGGGTSEE T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-ECCCCEECHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHHHHCCCCCEEEE T ss_conf 999999999999971899699999-569835167999999999999995-899899996898-99999998399772677 Q ss_pred ECCHHHHHHH Q ss_conf 4998999999 Q gi|254781049|r 381 AIDLDDAAQK 390 (398) Q Consensus 381 ~~~~~~A~~~ 390 (398) +.+.++|.+. T Consensus 103 ~~s~~~Al~~ 112 (116) T 1th8_B 103 EADEQFALQA 112 (116) T ss_dssp ESSHHHHHHH T ss_pred ECCHHHHHHH T ss_conf 5899999986 No 96 >3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} Probab=72.20 E-value=4.5 Score=18.75 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=69.9 Q ss_pred CEEEEECCCHHHH------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 1799955503689------999999965899624884278889899999999-986199865899963586132899999 Q gi|254781049|r 268 NIGCMVNGAGLAM------ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVK 340 (398) Q Consensus 268 ~Ig~~vnGaGlam------atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~ 340 (398) +|+++....+... ...+.+..+|.+.....-. ++-+.+..+++++ ++...|++.+|+. .-|.+|. T Consensus 126 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ai~~-------~~d~~a~ 197 (285) T 3c3k_A 126 RIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYA-ENLDYMAGKLATFSLLKSAVKPDAIFA-------ISDVLAA 197 (285) T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEEC-SSSSHHHHHHHHHHHHSSSSCCSEEEE-------SSHHHHH T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEE-------CCHHHHH T ss_conf 69998244566404576799999999859984312122-211455578999988741799753774-------5779999 Q ss_pred HHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 99999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 341 GILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 341 gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+++++++.++++| -|+=..++... +.+ ...+.. ...+..+-.++++++. T Consensus 198 g~~~~l~~~g~~vp~di~vig~d~~~~~---~~~-~p~ltt-v~~~~~~~g~~a~~~L 250 (285) T 3c3k_A 198 GAIQALTESGLSIPQDVAVVGFDGVDIS---QIT-VPALTT-VQQPSEQIGMKAVSLL 250 (285) T ss_dssp HHHHHHHHTTCCTTTTCEEECSBCCGGG---GTS-SSCCBE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEEEECCCHHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 9999999849977843899823872899---815-898349-9949999999999999 No 97 >2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} Probab=70.80 E-value=4.8 Score=18.55 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=53.2 Q ss_pred CCCCHHHHHHHHHHHH-C-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCCCC Q ss_conf 8889899999999986-1-99865899963586132899999999999972999-8799974898589999999976995 Q gi|254781049|r 301 GGADQDKVAAAFKIIT-S-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESGLN 377 (398) Q Consensus 301 G~a~~e~~~~a~~~il-~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g~~ 377 (398) ++.+.+.....+.-+| + +|++++|+. .-|.+|.|+++|+++.+.. ...|+=..|+ ..+++.+++..+. T Consensus 176 ~~~~~~~a~~~~~~~L~~~~p~i~~I~~-------~nd~~a~g~~~al~~~g~~~~i~vvG~D~~--~~~~~~i~~G~~~ 246 (332) T 2rjo_A 176 ADWNSQKAFPIMQAWMTRFNSKIKGVWA-------ANDDMALGAIEALRAEGLAGQIPVTGMDGT--QPGLVAIKSGELV 246 (332) T ss_dssp CTTCHHHHHHHHHHHHHHHGGGEEEEEE-------SSHHHHHHHHHHHHHTTCBTTBCEECSBCC--HHHHHHHHTTSCC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEE-------CCCHHHHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHCCCCE T ss_conf 2321068999999999737766519996-------797899999999997699999289998997--9999999749975 Q ss_pred EEEECCHHHHHHHHHHH Q ss_conf 89949989999999998 Q gi|254781049|r 378 VITAIDLDDAAQKIVHA 394 (398) Q Consensus 378 ~~~~~~~~~A~~~~v~~ 394 (398) .....+...-..++|++ T Consensus 247 atv~q~~~~~G~~av~~ 263 (332) T 2rjo_A 247 ASVDWDPFWLGGIGLSM 263 (332) T ss_dssp BEEECCHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHH T ss_conf 99918999999999999 No 98 >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Probab=67.52 E-value=5.6 Score=18.11 Aligned_cols=88 Identities=15% Similarity=0.067 Sum_probs=59.4 Q ss_pred CCCCCCHHHHHHHH-HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHHHCCC Q ss_conf 27888989999999-998619986589996358613289999999999997299-9879997489858999999997699 Q gi|254781049|r 299 VGGGADQDKVAAAF-KIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKI-NIPLVMRLEGANVDIGNRLIAESGL 376 (398) Q Consensus 299 ~gG~a~~e~~~~a~-~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~-~~pivvRl~Gtn~~~g~~il~~~g~ 376 (398) ..+..+.+..++.+ .++.++|++++|+ ...|.+|.|+++|+++.+. +...|+-..++. +..+.+++-.+ T Consensus 167 ~~~~~~~~~~~~~~~~~l~~~p~~daI~-------~~~d~~a~ga~~A~~~~g~~~~i~vvg~D~~~--~~~~~i~~G~i 237 (303) T 3d02_A 167 MPVAESVDDSRRTTLDLMKTYPDLKAVV-------SFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPS--QAASLIKSGDI 237 (303) T ss_dssp BSCTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSTTHHHHHHHHHHHTTCTTTCEEEECCCHH--HHHHHHHHTSS T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEE-------ECCCHHHHHHHHHHHHCCCCCCEEEEEECCHH--HHHHHHHCCCC T ss_conf 0256666999999999997299972999-------88977999999999976999982999999869--99999975997 Q ss_pred CEEEECCHHHHHHHHHHHH Q ss_conf 5899499899999999985 Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398) ......+..+-...++.++ T Consensus 238 ~~tv~q~~~~~G~~a~~~~ 256 (303) T 3d02_A 238 TEGITYDPATAGYALAAVA 256 (303) T ss_dssp CEEEECCHHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHH T ss_conf 7999459999999999999 No 99 >3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} Probab=66.94 E-value=5.8 Score=18.03 Aligned_cols=84 Identities=8% Similarity=0.176 Sum_probs=54.9 Q ss_pred CCCHHH-HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHHHCCCCEE Q ss_conf 889899-9999999861998658999635861328999999999999729998-79997489858999999997699589 Q gi|254781049|r 302 GADQDK-VAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINI-PLVMRLEGANVDIGNRLIAESGLNVI 379 (398) Q Consensus 302 ~a~~e~-~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~-pivvRl~Gtn~~~g~~il~~~g~~~~ 379 (398) +.+.+. .....+++.+.|++.+|| ...|.+|.|+++|+++.+.+- -.++=..++.. ....+++.-+... T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~a~~~~g~~~~i~vvg~d~~~~--~~~~i~~g~~~~t 238 (276) T 3ksm_A 168 GDDRGAARSEMLRLLKETPTIDGLF-------TPNESTTIGALVAIRQSGMSKQFGFIGFDQTEE--LEAAMYAGEISNL 238 (276) T ss_dssp CSSHHHHHHHHHHHHHHCSCCCEEE-------CCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHH--HHHHHHTTSSSEE T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEE-------CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHH--HHHHHHCCCCEEE T ss_conf 1234789999887651289850442-------378299999999999769999818998789799--9999875995399 Q ss_pred EECCHHHHHHHHHHH Q ss_conf 949989999999998 Q gi|254781049|r 380 TAIDLDDAAQKIVHA 394 (398) Q Consensus 380 ~~~~~~~A~~~~v~~ 394 (398) ...+..+-..+++++ T Consensus 239 i~q~~~~~g~~a~~~ 253 (276) T 3ksm_A 239 VVQNPEYMGYLAVQR 253 (276) T ss_dssp EECCHHHHHHHHHHH T ss_pred EECCHHHHHHHHHHH T ss_conf 958999999999999 No 100 >3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Probab=66.06 E-value=6 Score=17.92 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=46.7 Q ss_pred HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHH Q ss_conf 9998619986589996358613289999999999997299987---9997489858999999997699589949989999 Q gi|254781049|r 312 FKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAA 388 (398) Q Consensus 312 ~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~ 388 (398) -+++.+.|++.+|+ +..|.+|.|+.+++++.+.++| -++-..+.... ..+ ...+.- ...+.++.. T Consensus 170 ~~~l~~~~~~~aIi-------~~~D~~A~g~~~al~~~g~~iP~di~iigfd~~~~~---~~~-~p~Ltt-v~~~~~~~g 237 (277) T 3hs3_A 170 QSALNKSNQFDAII-------TVNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNNILC---GYT-SPTIST-IDQNPKLIG 237 (277) T ss_dssp HHHHHTGGGCSEEE-------CSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGG---GTS-SSCCBE-EECCHHHHH T ss_pred HHHHHHCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH---HHC-CCCCEE-EEECHHHHH T ss_conf 99997266875587-------457588887889999629767873013540877999---700-899569-997999999 Q ss_pred HHHHHHH Q ss_conf 9999985 Q gi|254781049|r 389 QKIVHAV 395 (398) Q Consensus 389 ~~~v~~~ 395 (398) +++|++. T Consensus 238 ~~av~~l 244 (277) T 3hs3_A 238 QTAAHRL 244 (277) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 101 >3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus} Probab=61.09 E-value=7.3 Score=17.33 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=58.8 Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH-HH---HHH Q ss_conf 79995550368999999996589962488427888989999999998619986589996358613289999-99---999 Q gi|254781049|r 269 IGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLV-KG---ILS 344 (398) Q Consensus 269 Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA-~g---ii~ 344 (398) |-++--.+.|-.+..+.+... +.+... .-..|++|.+.+. +.+++..|..| +. +++ T Consensus 31 v~I~r~~g~L~F~na~~~~~~------------------i~~~~~-~~~~~~~k~vVld-~~~v~~iD~tg~~~L~~l~~ 90 (143) T 3llo_A 31 IKIFQINAPIYYANSDLYSSA------------------LKRKTG-VNGSENIHTVILD-FTQVNFMDSVGVKTLAGIVK 90 (143) T ss_dssp EEEEEECSCHHHHHHHHHHHC------------------------------CCSEEEEE-CTTCCCCCHHHHHHHHHHHH T ss_pred EEEEECCCCCEECCCHHHHHH------------------HHHHHH-HCCCCCCEEEEEE-ECCCCCCCHHHHHHHHHHHH T ss_conf 999984898577122888888------------------766642-0257982599999-66898588799999999999 Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHCCC------CEEEECCHHHHHHHH Q ss_conf 99972999879997489858999999997699------589949989999999 Q gi|254781049|r 345 AVKEVKINIPLVMRLEGANVDIGNRLIAESGL------NVITAIDLDDAAQKI 391 (398) Q Consensus 345 a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~------~~~~~~~~~~A~~~~ 391 (398) .+++. -+-+.+.|.+.+. ++.|+.+|+ .-..+.+.++|+..+ T Consensus 91 ~l~~~----gi~l~la~~~~~v-~~~l~~~g~~~~~~~~~~~F~sv~dAV~~a 138 (143) T 3llo_A 91 EYGDV----GIYVYLAGCSAQV-VNDLTSNRFFENPALKELLFHSIHDAVLGS 138 (143) T ss_dssp HHHTT----TCEEEEESCCHHH-HHHHHHTTTTSSGGGGGGEESSHHHHHHHT T ss_pred HHHHC----CCEEEEEECCHHH-HHHHHHCCCHHHCCCCCEEECCHHHHHHHH T ss_conf 99977----9999998098799-999998799121476553589999999999 No 102 >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Probab=60.33 E-value=7.6 Score=17.25 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=57.6 Q ss_pred HHHHHHHCCCCCCEEE-----ECCCCCCHHHHHHHH-HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 9999996589962488-----427888989999999-9986199865899963586132899999999999972999879 Q gi|254781049|r 282 TMDIIKLYGGAPANFL-----DVGGGADQDKVAAAF-KIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPL 355 (398) Q Consensus 282 tmD~i~~~Gg~pANFl-----D~gG~a~~e~~~~a~-~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pi 355 (398) ..+.+..+|.....+. +.....+.+..++++ +++.+.|.+.+|+. .-|.+|.|+++++++.+.++|= T Consensus 153 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~vp~ 225 (301) T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMS-------GNDEMAIQIYIAAMALGLRIPQ 225 (301) T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEE-------SSHHHHHHHHHHHHTTTCCHHH T ss_pred HHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHHHHHHHCCCCCC T ss_conf 999999859986762466403453046677999999999955999983003-------8899999999999981998896 Q ss_pred EEECCCCCHHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHH Q ss_conf 997489858999999997---6995899499899999999985 Q gi|254781049|r 356 VMRLEGANVDIGNRLIAE---SGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 356 vvRl~Gtn~~~g~~il~~---~g~~~~~~~~~~~A~~~~v~~~ 395 (398) =+.+-|.+.. ..+.. ..+.. ...+..+..++++++. T Consensus 226 di~ivg~d~~---~~~~~~~~p~ltt-i~~~~~~~g~~av~~L 264 (301) T 3miz_A 226 DVSIVGFDDF---RTVTMALKPELTT-AALPYYDLGREGAKWL 264 (301) T ss_dssp HCEEECSBCC---HHHHTTSSSCCBE-EECCHHHHHHHHHHHH T ss_pred CCEEEECCCH---HHHHHHCCCCEEE-EEECHHHHHHHHHHHH T ss_conf 3002412776---8899627998169-9969999999999999 No 103 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=60.15 E-value=7.6 Score=17.23 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=53.8 Q ss_pred CCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHCCCCE Q ss_conf 8889899999999-986199865899963586132899999999999972999-87999748985899999999769958 Q gi|254781049|r 301 GGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKIN-IPLVMRLEGANVDIGNRLIAESGLNV 378 (398) Q Consensus 301 G~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~-~pivvRl~Gtn~~~g~~il~~~g~~~ 378 (398) +..+.+..++++. ++.++|++++|+ ...|.+|.|+++|+++.+.+ -..++=..++.. .++.+++-.+.. T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~I~-------~~~d~~a~g~~~al~~~g~~~~v~i~g~D~~~~--~~~~i~~G~i~~ 240 (289) T 3brs_A 170 CDSNYDKAYDGTVELLTKYPDISVMV-------GLNQYSATGAARAIKDMSLEAKVKLVCIDSSME--QIQYLEEGIFEA 240 (289) T ss_dssp CTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHHHHHHHHHHHTTCTTTSEEEEEESCSC--C-----CCSCCE T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEE-------CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHH--HHHHHHCCCCEE T ss_conf 15640668999999871389864898-------178399999999999769999968999889699--999987599629 Q ss_pred EEECCHHHHHHHHHHH Q ss_conf 9949989999999998 Q gi|254781049|r 379 ITAIDLDDAAQKIVHA 394 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~ 394 (398) ....+..+-...++++ T Consensus 241 tv~q~~~~~G~~av~~ 256 (289) T 3brs_A 241 MVVQKPFNIGYLGVEK 256 (289) T ss_dssp EEECCHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHH T ss_conf 9948999999999999 No 104 >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Probab=59.30 E-value=7.9 Score=17.13 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=58.3 Q ss_pred CHHHHHHHH-HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC Q ss_conf 989999999-9986199865899963586132899999999999972999879997489858999999997699589949 Q gi|254781049|r 304 DQDKVAAAF-KIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAI 382 (398) Q Consensus 304 ~~e~~~~a~-~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~ 382 (398) +.+...... .++...|++.+|+. .+|.+|.|+.+++++.+++.|.++-..|++.. ...+.+.-.-..... T Consensus 165 ~~~~~~~~~~~~~~~~~~~~ai~~-------~~d~~a~g~~~a~~~~g~~~~~vig~d~~~~~--~~~~~~~~~ltti~~ 235 (271) T 2dri_A 165 DRIKGLNVMQNLLTAHPDVQAVFA-------QNDEMALGALRALQTAGKSDVMVVGFDGTPDG--EKAVNDGKLAATIAQ 235 (271) T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHHHHHHHHHHTCCSCEEEEEECCHHH--HHHHHTTSSCEEEEC T ss_pred HHHHHHHHHHHHHCCCCCCEEEEE-------CCHHHHHHHHHHHHHHCCCCCCEEECCCCHHH--HHHHHCCCCEEEEEC T ss_conf 125568999974234679728994-------57599999999999858986828615798799--999856996599945 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999985 Q gi|254781049|r 383 DLDDAAQKIVHAV 395 (398) Q Consensus 383 ~~~~A~~~~v~~~ 395 (398) +..+..+.++++. T Consensus 236 ~~~~~g~~av~~l 248 (271) T 2dri_A 236 LPDQIGAKGVETA 248 (271) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999999 No 105 >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Probab=57.49 E-value=8.4 Score=16.94 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=11.0 Q ss_pred EEE-ECCHHHHHHHHHHH Q ss_conf 799-58999999999986 Q gi|254781049|r 70 VRV-ESSLKSVISDIREI 86 (398) Q Consensus 70 V~l-~~s~~ea~~~a~~i 86 (398) |.+ ++|.+-+++.+++. T Consensus 47 v~v~nRt~~ka~~la~~~ 64 (144) T 3oj0_A 47 VTVAGRNIDHVRAFAEKY 64 (144) T ss_dssp EEEEESCHHHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHH T ss_conf 689819999999998750 No 106 >2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A* Probab=57.20 E-value=8.5 Score=16.91 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=48.2 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH----HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC--E Q ss_conf 899999999986199865899963586132899999999----9999729998799974898589999999976995--8 Q gi|254781049|r 305 QDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGIL----SAVKEVKINIPLVMRLEGANVDIGNRLIAESGLN--V 378 (398) Q Consensus 305 ~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii----~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~--~ 378 (398) ++..++.+.-.+.+.+.+.+.++ |.++...|--+-+.. +.+++.+ .-+.+.|.+.+. +++|+.+|+. + T Consensus 36 a~~f~~~l~~~~~~~~~~~vilD-ls~v~~iDssgl~~L~~~~~~~~~~g----~~l~l~~~~~~v-~~~l~~~gl~~~~ 109 (125) T 2ka5_A 36 AHLFKKWVFDEFLNKGYNKIFLV-LSDVESIDSFSLGVIVNILKSISSSG----GFFALVSPNEKV-ERVLSLTNLDRIV 109 (125) T ss_dssp THHHHHHHHHHTTTTTCCEEEEE-CTTCSCCCHHHHHHHHHHHHHHHHHT----CEEEEECCCHHH-HHHHHHTTSTTTS T ss_pred HHHHHHHHHHHHHHCCCCEEEEE-CCCCCEECHHHHHHHHHHHHHHHHCC----CEEEEECCCHHH-HHHHHHCCCCCEE T ss_conf 99999999999996699889998-47997277689999999999999779----999995799899-9999981998602 Q ss_pred EEECCHHHHHHH Q ss_conf 994998999999 Q gi|254781049|r 379 ITAIDLDDAAQK 390 (398) Q Consensus 379 ~~~~~~~~A~~~ 390 (398) ..+.+.++|.+. T Consensus 110 ~i~~s~~eAl~~ 121 (125) T 2ka5_A 110 KIYDTISEAMEE 121 (125) T ss_dssp EEESSHHHHHTT T ss_pred EECCCHHHHHHH T ss_conf 004999999999 No 107 >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} Probab=56.96 E-value=8.6 Score=16.88 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=58.0 Q ss_pred EECCCCCCHHHHHHHHHH---HHCCCCCCEEEEECCCCHHHHHHHHH-HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 842788898999999999---86199865899963586132899999-99999997299987999748985899999999 Q gi|254781049|r 297 LDVGGGADQDKVAAAFKI---ITSDSSVKGILINIFGGIMRCDVLVK-GILSAVKEVKINIPLVMRLEGANVDIGNRLIA 372 (398) Q Consensus 297 lD~gG~a~~e~~~~a~~~---il~~~~vk~iliNifGGI~~cd~vA~-gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~ 372 (398) +.+-|.-+......-.+- -+.+.+.+.++++ |.|+.-+|--+- .+++.++..+ ....-+.+.|-+.+.. +.+. T Consensus 16 v~l~G~Ld~~~~~~l~~~ll~~i~~~~~~~vilD-~s~v~~idssgl~~l~~~~~~~~-~~g~~~~l~g~~p~v~-~~l~ 92 (123) T 2vy9_A 16 VAIEETLHDQSVIQFKEELLHNITGVAGKGLVID-ISALEVVDSFVTRVLIEISRLAE-LLGLPFVLTGIKPAVA-ITLT 92 (123) T ss_dssp EECCCCSCSHHHHHHHHHHHHHHTTSCCSEEEEE-CTTCSSCCHHHHHHHHHHHHHHH-HTTCCEEEECCCHHHH-HHHH T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHH-HHHH T ss_conf 9856898789999999999999984799799998-56997451999999999999999-7699899993899999-9999 Q ss_pred HCCCC---EEEECCHHHHHHHHHHHH Q ss_conf 76995---899499899999999985 Q gi|254781049|r 373 ESGLN---VITAIDLDDAAQKIVHAV 395 (398) Q Consensus 373 ~~g~~---~~~~~~~~~A~~~~v~~~ 395 (398) ..|++ +.++.++++|.+..-... T Consensus 93 ~~g~d~~~~~~~~tl~~Al~~l~~~~ 118 (123) T 2vy9_A 93 EMGLDLRGMATALNLQKGLDKLKNLA 118 (123) T ss_dssp HTTCCSTTSEEESSHHHHHHHHHHHT T ss_pred HHCCCCCCCEEECCHHHHHHHHHHHC T ss_conf 95998678256689999999998633 No 108 >3oir_A Sulfate transporter sulfate transporter family PR; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; HET: MSE; 1.85A {Wolinella succinogenes} Probab=56.42 E-value=4.7 Score=18.61 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=50.5 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH----HHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC---- Q ss_conf 99999999986199865899963586132899999999----9999729998799974898589999999976995---- Q gi|254781049|r 306 DKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGIL----SAVKEVKINIPLVMRLEGANVDIGNRLIAESGLN---- 377 (398) Q Consensus 306 e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii----~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~---- 377 (398) +.+.+.++-+ .++.+.+.++ |.++...|..+-+.+ +.++..+ +-+.+.|.+.. -+++|+.+|+. T Consensus 39 ~~~~~~l~~~--~~~~~~vIlD-~~~v~~iDssg~~~L~~l~~~~~~~g----~~l~l~~~~~~-v~~~l~~~g~~~~~~ 110 (135) T 3oir_A 39 DRLKGVLDVI--EETPKVFILR-MRRVPVIDATGMHALWEFQESCEKRG----TILLLSGVSDR-LYGALNRFGFIEALG 110 (135) T ss_dssp HHHTTHHHHC--SSCCSEEEEE-CTTCSCBCHHHHHHHHHHHHHHHHHT----CEEEEESCCHH-HHHHHHHTTHHHHHC T ss_pred HHHHHHHHHH--CCCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCC----CEEEEEECCHH-HHHHHHHCCCHHHCC T ss_conf 9999999973--4799999997-50797547889999999999998579----99999979989-999999869923328 Q ss_pred -EEEECCHHHHHHHHHHHHH Q ss_conf -8994998999999999850 Q gi|254781049|r 378 -VITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 378 -~~~~~~~~~A~~~~v~~~k 396 (398) -..+.++++|++.+-++++ T Consensus 111 ~~~if~t~~~Al~~a~~~~~ 130 (135) T 3oir_A 111 EERVFDHIDKALAYAKLLVE 130 (135) T ss_dssp GGGBCSSHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHH T ss_conf 77244999999999999865 No 109 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=55.97 E-value=8.9 Score=16.78 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=65.8 Q ss_pred HHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-- Q ss_conf 999999996589962--4884278889899999999-98619986589996358613289999999999997299987-- Q gi|254781049|r 280 MATMDIIKLYGGAPA--NFLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP-- 354 (398) Q Consensus 280 matmD~i~~~Gg~pA--NFlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p-- 354 (398) ....|.+..+|-.+. .+.+.+. .+.+.-+++++ ++-..|.+.+||. ..|.+|.|+++++++.+.++| T Consensus 226 ~gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~~-------~nD~~A~g~~~al~~~Gl~vP~d 297 (366) T 3h5t_A 226 RGAMEVFIEAGIDPGTVPIMECWI-NNRQHNFEVAKELLETHPDLTAVLC-------TVDALAFGVLEYLKSVGKSAPAD 297 (366) T ss_dssp HHHHHHHHHHTCCGGGSCEEEESS-CCHHHHHHHHHHHHHHCTTCCEEEE-------SSHHHHHHHHHHHHHTTCCTTTT T ss_pred HHHHHHHHHCCCCCCCCEEEECCC-CCHHHHHHHHHHHHCCCCCCCEEEC-------CCHHHHHHHHHHHHHCCCCCCCC T ss_conf 899999998399955313541245-6667788899886412899876522-------88899999999999859999998 Q ss_pred -EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf -99974898589999999976995899499899999999985 Q gi|254781049|r 355 -LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 355 -ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) -|+-..++. ++. ...+.. ...+..+-.+.++++. T Consensus 298 i~Vig~D~~~--~~~----~p~Ltt-i~~~~~~~g~~av~~l 332 (366) T 3h5t_A 298 LSLTGFDGTH--MAL----ARDLTT-VIQPNKLKGFKAGETL 332 (366) T ss_dssp CEEEEEECCH--HHH----HTTCCE-EECCHHHHHHHHHHHH T ss_pred EEEEEECCCH--HHH----CCCCCE-EEECHHHHHHHHHHHH T ss_conf 7999989668--993----899838-9859999999999999 No 110 >3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor} Probab=55.48 E-value=7.2 Score=17.38 Aligned_cols=87 Identities=8% Similarity=0.126 Sum_probs=51.8 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH-HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCC-E---- Q ss_conf 899999999986199865899963586132899999-9999999729998799974898589999999976995-8---- Q gi|254781049|r 305 QDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVK-GILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLN-V---- 378 (398) Q Consensus 305 ~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~-gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~-~---- 378 (398) .+...+.+.-+. ++.+.++++ |.++..+|..|- .+.+..++.+ ..-+-+++.|.+.. =+++|+.+|+. . T Consensus 35 a~~~~~~l~~~~--~~~~~vIlD-~~~v~~iD~sg~~~l~~~~~~~~-~~g~~l~l~~~~~~-v~~~l~~~gl~~~i~~~ 109 (130) T 3mgl_A 35 AETFERVMGSIQ--ETPQILILR-LKWVPFMDITGIQTLEEMIQSFH-KRGIKVLISGANSR-VSQKLVKAGIVKLVGEQ 109 (130) T ss_dssp HHHHHHHHHHSS--SCCSEEEEE-EEECCCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHH-HHHHHHHTTHHHHHCGG T ss_pred HHHHHHHHHHHC--CCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCHH-HHHHHHHCCCHHHCCCC T ss_conf 999999999724--799999997-73798768689999999999999-77998999828889-99999986996554966 Q ss_pred EEECCHHHHHHHHHHHHH Q ss_conf 994998999999999850 Q gi|254781049|r 379 ITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~~k 396 (398) ..+.+.++|.+.|+.-.+ T Consensus 110 ~if~s~~~Al~~a~~~~~ 127 (130) T 3mgl_A 110 NVYPVFEGALSAALTEIE 127 (130) T ss_dssp GEESSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 214999999999999873 No 111 >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Probab=54.54 E-value=9.4 Score=16.63 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=56.2 Q ss_pred CCCCCCHHHHHHHHH-HHHCC-CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHCC Q ss_conf 278889899999999-98619-986589996358613289999999999997299987-999748985899999999769 Q gi|254781049|r 299 VGGGADQDKVAAAFK-IITSD-SSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP-LVMRLEGANVDIGNRLIAESG 375 (398) Q Consensus 299 ~gG~a~~e~~~~a~~-~il~~-~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p-ivvRl~Gtn~~~g~~il~~~g 375 (398) .+.+.+.+..++.+. .++.. |.+++|+ ...|.+|.|+++|+++.+...+ .|+=..|+. +..+.+++.. T Consensus 165 ~~~~~~~~~a~~~~~~~L~~~~~~~~ai~-------~~~D~~a~g~~~al~~~g~~~~i~v~g~d~~~--~~~~~i~~g~ 235 (313) T 3m9w_A 165 WVDGWLPENALKIMENALTANNNKIDAVV-------ASNDATAGGAIQALSAQGLSGKVAISGQDADL--AGIKRIAAGT 235 (313) T ss_dssp ECGGGCHHHHHHHHHHHHHHTTTCCCEEE-------ESSHHHHHHHHHHHHTTTCTTTSEECCCSCCH--HHHHHHHHTS T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCEEEEECCCH--HHHHHHHCCC T ss_conf 34555588899999999974565650899-------66858999999999977999985699978999--9999986599 Q ss_pred CCEEEECCHHHHHHHHHHHH Q ss_conf 95899499899999999985 Q gi|254781049|r 376 LNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 376 ~~~~~~~~~~~A~~~~v~~~ 395 (398) +......+..+-...+++++ T Consensus 236 ~~~tv~q~~~~~G~~av~~~ 255 (313) T 3m9w_A 236 QTMTVYKPITLLANTAAEIA 255 (313) T ss_dssp SCCEEECCHHHHHHHHHHHH T ss_pred CEEEEECCHHHHHHHHHHHH T ss_conf 65999389999999999999 No 112 >1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Probab=53.66 E-value=9.7 Score=16.54 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=53.6 Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 88989999999998619986589996358613289999999999997299987999748985899999999769958994 Q gi|254781049|r 302 GADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITA 381 (398) Q Consensus 302 ~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~ 381 (398) ..+.+..++.++-++. +++.+|+. ..|.+|-|+++++++.+++.+-++-..++... +++ ...+.- .. T Consensus 155 ~~~~~~~~~~~~~~l~-~~~~ai~~-------~~D~~A~g~~~~l~~~g~~d~~iig~d~~~~~---~~~-~p~ltt-v~ 221 (255) T 1byk_A 155 GLAMKQGYENVAKVIT-PETTALLC-------ATDTLALGASKYLQEQRIDTLQLASVGNTPLM---KFL-HPEIVT-VD 221 (255) T ss_dssp CSCHHHHHHHSGGGCC-TTCCEEEE-------SSHHHHHHHHHHHHHTTCCSCEEEEECCCHHH---HHH-CTTSEE-EB T ss_pred CCCHHHHHHHHHHHHC-CCCCCCCC-------CCHHHHHHHHHHHHHCCCCCCEEEEECCHHHH---HHC-CCCCEE-EE T ss_conf 7777889999998506-56761323-------42589999999999819998729999982899---833-899569-98 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 99899999999985 Q gi|254781049|r 382 IDLDDAAQKIVHAV 395 (398) Q Consensus 382 ~~~~~A~~~~v~~~ 395 (398) .+..+..+.++++. T Consensus 222 ~~~~~~g~~a~~~l 235 (255) T 1byk_A 222 PGYAEAGRQAACQL 235 (255) T ss_dssp CCHHHHHHHHHHHH T ss_pred ECHHHHHHHHHHHH T ss_conf 39999999999999 No 113 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=51.86 E-value=10 Score=16.35 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=76.1 Q ss_pred CCEEEEECC-CHH------HHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHH Q ss_conf 817999555-036------89999999965899624884278-8898999999999-86199865899963586132899 Q gi|254781049|r 267 GNIGCMVNG-AGL------AMATMDIIKLYGGAPANFLDVGG-GADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDV 337 (398) Q Consensus 267 G~Ig~~vnG-aGl------amatmD~i~~~Gg~pANFlD~gG-~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~ 337 (398) .+|+++..+ .+. --...+.+..+|.....++.... ..+.+..+.+... +.+.+...+|| ...|. T Consensus 188 r~i~~l~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~-------~~~d~ 260 (355) T 3e3m_A 188 RKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-------CVSDM 260 (355) T ss_dssp CSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-------ESSHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE-------ECCHH T ss_conf 62999957887774099998716999998599942100224453023445666556875389997688-------56779 Q ss_pred HHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHH Q ss_conf 99999999997299987---999748985899999999769958-99499899999999985 Q gi|254781049|r 338 LVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNV-ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 338 vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~-~~~~~~~~A~~~~v~~~ 395 (398) +|.|+.+++++.+..+| -|+-..++.. .....-++ ....+.++-..+||++. T Consensus 261 ~A~g~~~~l~~~g~~vP~disVig~D~~~~------~~~~~p~lttv~~~~~~~G~~Ave~L 316 (355) T 3e3m_A 261 PAFGLLSRLKSIGVAVPEQVSVVGFGNFEV------SRFASPEISTVRVDPIAIGRETGSLI 316 (355) T ss_dssp HHHHHHHHHHHHTCCTTTTCEEECSSCCHH------HHHSSSCCBEEECCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCHH------HHHCCCCCEEEEECHHHHHHHHHHHH T ss_conf 999999999985999998439999778489------98238996499969999999999999 No 114 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Probab=49.21 E-value=11 Score=16.08 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=67.2 Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC- Q ss_conf 368999999996589962488427888989999999998-619986589996358613289999999999997299987- Q gi|254781049|r 277 GLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKII-TSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP- 354 (398) Q Consensus 277 GlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~i-l~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p- 354 (398) .......+....+|.+.-....+-+..+.+.-++.++-+ -+.+.+.+|+. ..|.+|.|+++++++.+..+| T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-------~~d~~A~g~~~~l~~~g~~vP~ 215 (289) T 1dbq_A 143 GRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-------GGDIMAMGALCAADEMGLRVPQ 215 (289) T ss_dssp HHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-------SCHHHHHHHHHHHHHTTCCTTT T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE-------CCCHHHHHHHHHHHHHHCCCCC T ss_conf 888789999997289988307996466545699999999828999808998-------8709988778999985256996 Q ss_pred --EEEECCCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH Q ss_conf --9997489858999999997699589-9499899999999985 Q gi|254781049|r 355 --LVMRLEGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV 395 (398) Q Consensus 355 --ivvRl~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~ 395 (398) -|+-..+....+ ....++. ...+..+..+.|+++. T Consensus 216 di~Vig~d~~~~~~------~~~p~lttv~~~~~~~g~~a~~~l 253 (289) T 1dbq_A 216 DVSLIGYDNVRNAR------YFTPALTTIHQPKDSLGETAFNML 253 (289) T ss_dssp TCEEEEEECCTTGG------GSSSCCEEEECCSHHHHHHHHHHH T ss_pred EEEEEECCCHHHHH------HCCCCCEEEECCHHHHHHHHHHHH T ss_conf 08999568768897------268996699859999999999999 No 115 >3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} Probab=49.06 E-value=11 Score=16.07 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=62.4 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC--CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EE Q ss_conf 999999658996248842788898999999999861--9986589996358613289999999999997299987---99 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITS--DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LV 356 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~--~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---iv 356 (398) ..+.+..+|.++ ..+ -+..+.+..++++..++. .+++.+|+ ...|.+|.|+++++++.+..+| -| T Consensus 140 f~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ai~-------~~~d~~A~gv~~~l~~~g~~vP~dv~v 209 (277) T 3cs3_A 140 STRELTRFGIPY-EII--QGDFTEPSGYAAAKKILSQPQTEPVDVF-------AFNDEMAIGVYKYVAETNYQMGKDIRI 209 (277) T ss_dssp HHHHHHHTTCCE-EEE--ECCSSHHHHHHHHHHHTTSCCCSSEEEE-------ESSHHHHHHHHHHHTTSSCCBTTTEEE T ss_pred HHHHHHHCCCCC-EEE--CCCCCCCHHHHHHHHHHHCCCCCCEEEE-------ECCHHHHHCHHHHHHHCCCCCCCCEEE T ss_conf 999999839972-021--0222200489999998633678870787-------178788635589999749988984389 Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 974898589999999976995899499899999999985 Q gi|254781049|r 357 MRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 357 vRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) +=..++..- +.+ ...+.. ...+..+.+++++++. T Consensus 210 ig~d~~~~~---~~~-~p~ltt-i~~~~~~lg~~a~~~l 243 (277) T 3cs3_A 210 IGFDNSELG---AFV-QPRLAT-IAYSKHRWGMVAAEKI 243 (277) T ss_dssp ECSSCCHHH---HHS-SSCCBE-EECCHHHHHHHHHHHH T ss_pred EEECCHHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 998888999---730-899569-9849999999999999 No 116 >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Probab=48.14 E-value=12 Score=15.98 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=65.1 Q ss_pred CCCEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH Q ss_conf 98644228817999555036899999999658996248842788898999999999861998658999635861328999 Q gi|254781049|r 259 NLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVL 338 (398) Q Consensus 259 ~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~v 338 (398) ++++..+.|+.-.+..| +-=++|+.- +++.+...++-+-+.+.-+-+.+ |||+--.-| T Consensus 280 ~~~~~~~~gR~e~l~~~-----------------~~viiD~AH--Np~a~~a~l~~l~~~~~~~~ii~-i~G~~~dkd-- 337 (422) T 1w78_A 280 GIASAILPGRFQIVSES-----------------PRVIFDVAH--NPHAAEYLTGRMKALPKNGRVLA-VIGMLHDKD-- 337 (422) T ss_dssp HHHHCCCTTSSEEEETT-----------------TEEEEECCC--SHHHHHHHHHHHHHSCSCSCEEE-EECCBTTSC-- T ss_pred HHCCCCCCCCEEEECCC-----------------CEEEEECCC--CHHHHHHHHHHHHHHCCCCCEEE-ECCCCCCCC-- T ss_conf 41234556731696148-----------------749997688--98999999985355425875378-215557868-- Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC Q ss_conf 99999999972999879997489858999999997699589949989999999998506 Q gi|254781049|r 339 VKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 339 A~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) .+.+++.+.+. .+--+++...++..+...++.+... +...++++++|++.|.+.++. T Consensus 338 ~~~~~~~~~~~-~~~iii~~~~~~r~~~~~~i~~~~~-~~~~~~~~~eAi~~a~~~a~~ 394 (422) T 1w78_A 338 IAGTLAWLKSV-VDDWYCAPLEGPRGATAEQLLEHLG-NGKSFDSVAQAWDAAMADAKA 394 (422) T ss_dssp HHHHHHHHHTT-CSEEEECCCCSSSBCCHHHHHHHHS-SCEECSSHHHHHHHHHHHCCT T ss_pred HHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHC-CCCCCCCHHHHHHHHHHHCCC T ss_conf 99999998865-6999998999977799999999852-187469999999999985799 No 117 >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Probab=47.18 E-value=12 Score=15.88 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=55.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE Q ss_conf 27888989999999998619986589996358613289999999999997299987999748985899999999769958 Q gi|254781049|r 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNV 378 (398) Q Consensus 299 ~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~ 378 (398) +-|.++...+-+.+.+ .+.+.+++ -+.-|....-++...+++.+++++++|..- .+-.+.|+..|.+. T Consensus 54 i~GD~~~~~~L~~a~i----~~a~~vi~-----~~~~d~~n~~~~~~~r~l~p~~~iiar~~~---~~~~~~l~~~G~~~ 121 (140) T 3fwz_A 54 VLGNAANEEIMQLAHL----ECAKWLIL-----TIPNGYEAGEIVASARAKNPDIEIIARAHY---DDEVAYITERGANQ 121 (140) T ss_dssp EESCTTSHHHHHHTTG----GGCSEEEE-----CCSCHHHHHHHHHHHHHHCSSSEEEEEESS---HHHHHHHHHTTCSE T ss_pred EECCCCCHHHHHHHCH----HHHCEEEE-----CCCCHHHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHCCCCE T ss_conf 8515899999997274----45189999-----879889999999999997899849999879---99999999779899 Q ss_pred EEECCHHHHHHHHHHHH Q ss_conf 99499899999999985 Q gi|254781049|r 379 ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~~ 395 (398) .... -.++++...++. T Consensus 122 vi~~-~~~~a~~l~~~l 137 (140) T 3fwz_A 122 VVMG-EREIARTMLELL 137 (140) T ss_dssp EEEH-HHHHHHHHHHHH T ss_pred EECH-HHHHHHHHHHHH T ss_conf 9988-999999999974 No 118 >2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} Probab=46.27 E-value=13 Score=15.79 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=30.2 Q ss_pred HHCCCCCCEEEEECCCCHH----HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEE Q ss_conf 8619986589996358613----2899999999999972999879997489858999999997699589 Q gi|254781049|r 315 ITSDSSVKGILINIFGGIM----RCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVI 379 (398) Q Consensus 315 il~~~~vk~iliNifGGI~----~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~ 379 (398) +.+.-+++.--|--.|..- +=..+|+.|++++++..+++|+++- .|+...+-.+.-++.|+++. T Consensus 103 ~a~~~g~~l~hVKpHGALYn~~~~D~~lA~ai~~ai~~~~~~l~l~~l-a~~~~~~~~~~A~~~Gl~~~ 170 (252) T 2x5e_A 103 FCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVL-ALADNGRELELADEADVPLL 170 (252) T ss_dssp HHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEE-CCSCCHHHHHHHHHHTCCEE T ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-ECCCHHHHHHHHHHCCCCEE T ss_conf 999849910365313999999986199999999999985856427886-24760578889997799736 No 119 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=44.93 E-value=13 Score=15.66 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=19.3 Q ss_pred HHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCE Q ss_conf 9999986898888157479999999998729986 Q gi|254781049|r 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPL 42 (398) Q Consensus 9 K~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~ 42 (398) -+.|.+.|+|+- +++.-.+....+.+.|+++ T Consensus 20 a~~L~~~g~~vv---vID~d~~~v~~l~~~g~~v 50 (413) T 3l9w_A 20 GRLLLSSGVKMV---VLDHDPDHIETLRKFGMKV 50 (413) T ss_dssp HHHHHHTTCCEE---EEECCHHHHHHHHHTTCCC T ss_pred HHHHHHCCCCEE---EEECCHHHHHHHHHCCCCE T ss_conf 999996899889---9989999999999779909 No 120 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=44.15 E-value=14 Score=15.58 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=50.6 Q ss_pred HHHHHHHHHHHHCC---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE--E Q ss_conf 89999999998619---986589996358613289999999999997299987999748985899999999769958--9 Q gi|254781049|r 305 QDKVAAAFKIITSD---SSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNV--I 379 (398) Q Consensus 305 ~e~~~~a~~~il~~---~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~--~ 379 (398) .+....+.+++... +.+.+|+. ..|.+|.|+++|+++.+.+-..|+=..++. +..+.++....++ . T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~i~~-------~~d~~a~g~~~al~~~g~~dv~vvg~d~~~--~~~~~i~~~~~~~~~t 243 (291) T 3l49_A 173 QSAYSNVTDMLTKYPNEGDVGAIWA-------CWDVPMIGATQALQAAGRTDIRTYGVDGSP--EFVEMVADPESPAGAV 243 (291) T ss_dssp HHHHHHHHHHHHHCCSTTSCCEEEE-------SSHHHHHHHHHHHHHTTCCSCEEEEEECCH--HHHHHHHCTTSCEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEE-------CCCHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHHCCCCCCEEE T ss_conf 7899999999997214676776996-------687899999999998399985699993989--9999997799981599 Q ss_pred EECCHHHHHHHHHHHH Q ss_conf 9499899999999985 Q gi|254781049|r 380 TAIDLDDAAQKIVHAV 395 (398) Q Consensus 380 ~~~~~~~A~~~~v~~~ 395 (398) ...+..+-...+++++ T Consensus 244 v~q~~~~~G~~a~~~l 259 (291) T 3l49_A 244 AAQQPSEIGKLAVQNV 259 (291) T ss_dssp EECCHHHHHHHHHHHH T ss_pred EECCHHHHHHHHHHHH T ss_conf 9569999999999999 No 121 >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} Probab=44.07 E-value=14 Score=15.57 Aligned_cols=85 Identities=4% Similarity=-0.033 Sum_probs=53.3 Q ss_pred CCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHC Q ss_conf 2788898999999999861-9986589996358613289999999999997299987---99974898589999999976 Q gi|254781049|r 299 VGGGADQDKVAAAFKIITS-DSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAES 374 (398) Q Consensus 299 ~gG~a~~e~~~~a~~~il~-~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~ 374 (398) ..+..+.+..+++++-++. +|.+.+|+. .-|.+|.|+.+++++.+.++| -|+-..++..- +++. . T Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~al~~~g~~vp~di~vi~~d~~~~~---~~~~-p 227 (276) T 3jy6_A 159 SESSYNHSEVHQRLTQLITQNDQKTVAFA-------LKERWLLEFFPNLIISGLIDNQTVTATGFADTDFI---RRME-P 227 (276) T ss_dssp CSSSCCHHHHHHHHHHHHHSSSSCEEEEE-------SSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCCSTT---TCC--- T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEC-------CCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH---HHCC-C T ss_conf 13567678899999998764014330100-------66799999999999869999994799998884999---8418-9 Q ss_pred CCCEEEECCHHHHHHHHHHHH Q ss_conf 995899499899999999985 Q gi|254781049|r 375 GLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 375 g~~~~~~~~~~~A~~~~v~~~ 395 (398) .+.. ...+..+..+.++++. T Consensus 228 ~ltt-v~~~~~~~g~~av~~l 247 (276) T 3jy6_A 228 KLTL-ITQNPFLMGASSAEIM 247 (276) T ss_dssp CCCE-EECCHHHHHHHHHHHH T ss_pred CCEE-EEECHHHHHHHHHHHH T ss_conf 9549-9959999999999999 No 122 >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Probab=43.99 E-value=14 Score=15.56 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=65.6 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---E Q ss_conf 9999999965899624884278889899999999986-19986589996358613289999999999997299987---9 Q gi|254781049|r 280 MATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---L 355 (398) Q Consensus 280 matmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---i 355 (398) ....+....+|.+.....-+-+..+.+..+++++-++ +.|.+.+|| ...|.+|.|+++++++.+.++| - T Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~~~~~~l~~~G~~vP~di~ 269 (340) T 1qpz_A 197 AGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-------CGGDIMAMGALCAADEMGLRVPQDVS 269 (340) T ss_dssp HHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCE T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCCCEE T ss_conf 99999999869999801389657525689999999983799982799-------56828889998999985998899859 Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 9974898589999999976995899499899999999985 Q gi|254781049|r 356 VMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 356 vvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+=+.+...- +. -..++. ....+..+..++|+++. T Consensus 270 vvg~d~~~~~---~~-~~p~lt-ti~~~~~~~g~~Av~~L 304 (340) T 1qpz_A 270 LIGYDNVRNA---RY-FTPALT-TIHQPKDSLGETAFNML 304 (340) T ss_dssp EEEEECCTTG---GG-SSSCCE-EEECCHHHHHHHHHHHH T ss_pred EEEECCCHHH---HH-CCCCCE-EEECCHHHHHHHHHHHH T ss_conf 9987883898---82-389854-99769999999999999 No 123 >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} Probab=43.67 E-value=14 Score=15.53 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=56.4 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEE Q ss_conf 99999996589962488427888989999999998619986589996358613289999999999997299987---999 Q gi|254781049|r 281 ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVM 357 (398) Q Consensus 281 atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivv 357 (398) ...+.+..+|..+-.+..-......+... ..++...+...+|| +..|.+|.|+++|+++.+.++| -|+ T Consensus 165 gf~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~iP~Dv~vi 235 (305) T 3huu_A 165 GFKQYCDDVKISNDCVVIKSMNDLRDFIK--QYCIDASHMPSVII-------TSDVMLNMQLLNVLYEYQLRIPEDIQTA 235 (305) T ss_dssp HHHHHHHHTTCCCCEEEECSHHHHHHHC----------CCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEE T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHH--HHHHHCCCCCCCCC-------CCCHHHHHHHHHHHHHCCCCCCCCEEEE T ss_conf 99999998499831000244321155799--99995799976554-------5664777779999998499988725998 Q ss_pred ECCCCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHH Q ss_conf 748985899999999769958-99499899999999985 Q gi|254781049|r 358 RLEGANVDIGNRLIAESGLNV-ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 358 Rl~Gtn~~~g~~il~~~g~~~-~~~~~~~~A~~~~v~~~ 395 (398) =..++.. .+...-++ ....+.++.++++|++. T Consensus 236 g~d~~~~------~~~~~p~lttv~~~~~~~g~~av~~l 268 (305) T 3huu_A 236 TFNTSFL------TENATPSQTSVNINPDVLGFTAGNTI 268 (305) T ss_dssp EESCSHH------HHTSSSCCEEEECCHHHHHHHHHHHH T ss_pred ECCCHHH------HHHCCCCCEEEEECHHHHHHHHHHHH T ss_conf 2288589------97148983599839999999999999 No 124 >2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} Probab=43.05 E-value=14 Score=15.47 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=62.7 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEEC Q ss_conf 999965899624884278889899999999986-19986589996358613289999999999997299987---99974 Q gi|254781049|r 284 DIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRL 359 (398) Q Consensus 284 D~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl 359 (398) +.+..+|.. .++... +..+.+..+++++-++ +.|.+++||. ..|.+|.|+++++++.+.++| -|+=. T Consensus 162 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~a~g~~~~l~~~g~~vP~di~iig~ 232 (293) T 2iks_A 162 TAWKDDPRE-VHFLYA-NSYEREAAAQLFEKWLETHPMPQALFT-------TSFALLQGVMDVTLRRDGKLPSDLAIATF 232 (293) T ss_dssp HHHTTCCCC-EEEEEE-SSSCHHHHHHHHHHHTTTSCCCSEEEE-------SSHHHHHHHHHHHHHHHSSCCSSCEEEEE T ss_pred HHHHHCCCC-EEECCC-CCCHHHHHHHHHHHHHHCCCCCCEECC-------CCHHHHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 999976986-012111-011057788999987631578743114-------88899999999999839999986399995 Q ss_pred CCCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHHH Q ss_conf 89858999999997699589-9499899999999985 Q gi|254781049|r 360 EGANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHAV 395 (398) Q Consensus 360 ~Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~~ 395 (398) .++..- +...-++. ...+..+..++++++. T Consensus 233 d~~~~~------~~~~p~ltti~~~~~~~g~~a~~~L 263 (293) T 2iks_A 233 GDNELL------DFLQCPVLAVAQRHRDVAERVLEIV 263 (293) T ss_dssp SCCGGG------GGCSSEEEEEECCHHHHHHHHHHHH T ss_pred CCHHHH------HHCCCCCEEEEECHHHHHHHHHHHH T ss_conf 881899------7138996499959999999999999 No 125 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=42.77 E-value=14 Score=15.44 Aligned_cols=115 Identities=12% Similarity=0.189 Sum_probs=73.7 Q ss_pred CEEEEECCCHHH------HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 179995550368------99999999658996248842788898999999999861998658999635861328999999 Q gi|254781049|r 268 NIGCMVNGAGLA------MATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKG 341 (398) Q Consensus 268 ~Ig~~vnGaGla------matmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~g 341 (398) +|+++..-.+.. -...+....+|..+ ...+.......+....+++.+...++..+|+ ...|.+|.| T Consensus 174 ~I~~l~~~~~~~~~~~R~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g 245 (330) T 3ctp_A 174 KILHIKGPEVFEATELRYKGFLDGARAKDLEI-DFIEFQHDFQVKMLEEDINSMKDIVNYDGIF-------VFNDIAAAT 245 (330) T ss_dssp SEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC-EEEECSSSCCGGGGGCCCTTGGGGGGSSEEE-------ESSHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE-------ECCHHHHHH T ss_conf 69997066667089999999999998545554-2000123015778998888887345898523-------237899999 Q ss_pred HHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 9999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 342 ILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 342 ii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) +++++++.+.++| -|+-..++...+ .+ ...+.- ...+..+..++||++. T Consensus 246 ~~~~l~~~g~~vp~disvig~d~~~~~~---~~-~p~ltt-i~~~~~~~g~~Av~~L 297 (330) T 3ctp_A 246 VMRALKKRGVSIPQEVQIIGFDNSFIGE---LL-YPSLTT-INQPIEALAYTIIELL 297 (330) T ss_dssp HHHHHHHTTCCTTTTCEEECSBCCTHHH---HS-SSCCBE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHH---HC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 9999998199987226885128728888---31-899549-9859999999999999 No 126 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=41.91 E-value=15 Score=15.36 Aligned_cols=113 Identities=12% Similarity=0.249 Sum_probs=74.0 Q ss_pred CEEEEECCCHHHH------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 1799955503689------9999999658996248842788898999999999861998658999635861328999999 Q gi|254781049|r 268 NIGCMVNGAGLAM------ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKG 341 (398) Q Consensus 268 ~Ig~~vnGaGlam------atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~g 341 (398) +|+++........ ...+.+..+|..+ ...-+..+.+.-+.+.+.+...+...+||. ..|.+|.| T Consensus 176 ~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~A~g 245 (333) T 3jvd_A 176 NIAALVGEESLSTTQERMRGISHAASIYGAEV---TFHFGHYSVESGEEMAQVVFNNGLPDALIV-------ASPRLMAG 245 (333) T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE---EEEECCSSHHHHHHHHHHHHHTCCCSEEEE-------CCHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC---EEEECCCCHHHHHHHHHHHHCCCCCCEEEE-------CCHHHHHH T ss_conf 36897044210367888999999999759973---265245520217888999962799874310-------79999999 Q ss_pred HHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 9999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 342 ILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 342 ii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) +++++++.+.++| .|+-+.++...+ .+ ...+.- ...+..+-++.||++. T Consensus 246 ~~~al~~~g~~vP~disvig~D~~~~~~---~~-~p~ltt-i~~~~~~lg~~Av~~l 297 (333) T 3jvd_A 246 VMRAFTRLNVRVPHDVVIGGYDDPEWYS---FV-GAGITT-FVPPHEEMGKEAVRLL 297 (333) T ss_dssp HHHHHHHTTCCTTTTCEEEEESCCGGGG---GS-TTSCEE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCEEEEEECCHHHHH---HC-CCCCEE-EECCHHHHHHHHHHHH T ss_conf 9999998499999987999979859998---22-899739-9759999999999999 No 127 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=41.28 E-value=15 Score=15.29 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=69.3 Q ss_pred CEEEEECCCHHHH------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHH Q ss_conf 1799955503689------999999965899624884278889899999999-986199865899963586132899999 Q gi|254781049|r 268 NIGCMVNGAGLAM------ATMDIIKLYGGAPANFLDVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVK 340 (398) Q Consensus 268 ~Ig~~vnGaGlam------atmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~ 340 (398) +|+++.+-....- ...+.+..++-++-... -+..+.+..++.+. ++-+.++..+|| ..+|.+|. T Consensus 181 rI~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~~d~~A~ 251 (349) T 1jye_A 181 QIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER--EGDWSAMSGFQQTMQMLNEGIVPTAML-------VANDQMAL 251 (349) T ss_dssp SEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE--ECCCCHHHHHHHHHHHHHCCCCCCEEE-------CCCHHHHH T ss_conf 489952774322899989999999997599975156--357646558999999972599983564-------38849999 Q ss_pred HHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 99999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 341 GILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 341 gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |+++++++.+.++| -|+-..++..- +.+ ...+.- ...+.++.++.||++. T Consensus 252 g~~~~l~~~g~~vP~di~vig~d~~~~~---~~~-~p~ltt-i~~~~~~~g~~Av~~L 304 (349) T 1jye_A 252 GAMRAITESGLRVGADISVVGYDDTEDS---SCY-IPPLTT-IKQDFRLLGQTSVDRL 304 (349) T ss_dssp HHHHHHHHTTCCBTTTBEEECSBCCGGG---GGS-SSCCBE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCHHH---HHH-CCCCEE-EECCHHHHHHHHHHHH T ss_conf 9999999818978998599996882889---940-899559-9769999999999999 No 128 >3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} Probab=41.20 E-value=7.8 Score=17.15 Aligned_cols=14 Identities=0% Similarity=-0.178 Sum_probs=5.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 98859999999989 Q gi|254781049|r 183 ARIDGGDLFPNLYK 196 (398) Q Consensus 183 ~~~~~~~ii~~L~~ 196 (398) ......+++..+.+ T Consensus 211 HF~~Y~~v~~eFa~ 224 (432) T 3k1t_A 211 HFTAYDRVVEEFAP 224 (432) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 88999999999999 No 129 >1dys_A Endoglucanase, cellulase; hydrolase, cellulose degradation, glycoside hydrolase family 6; 1.6A {Humicola insolens} SCOP: c.6.1.1 Probab=39.99 E-value=16 Score=15.16 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=46.0 Q ss_pred CCCCEEEECCCCC----------CHHHHHHHHHHHHCCCCCCEEEEECC--------------CCHHHHHHH--HHHHHH Q ss_conf 9962488427888----------98999999999861998658999635--------------861328999--999999 Q gi|254781049|r 291 GAPANFLDVGGGA----------DQDKVAAAFKIITSDSSVKGILINIF--------------GGIMRCDVL--VKGILS 344 (398) Q Consensus 291 g~pANFlD~gG~a----------~~e~~~~a~~~il~~~~vk~iliNif--------------GGI~~cd~v--A~gii~ 344 (398) -+...|||.|.+. +.+.+.+.++..-...++++..+|+- ++-.++|++ ++.+.. T Consensus 173 pn~~vYlDaGhs~Wlgw~~n~~~~a~~~a~~l~~aG~~~~~rGFa~NVSNy~~~~~~~~~~~~~~n~~~dE~~y~~~~~~ 252 (348) T 1dys_A 173 SHIHLYLDVANGGWLGWADKLEPTAQEVATILQKAGNNAKIRGFSSNVSNYNPYSTSNPPPYTSGSPSPDESRYATNIAN 252 (348) T ss_dssp TTEEEEEECCCHHHHCSHHHHHHHHHHHHHHHHHHCSSCCCCEEEECTTCCCCSSCSSCCGGGTTCSCSSHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 98379997887776676223450499999999972675401366850334200134677644568885108999999999 Q ss_pred HHHHCCCCCCEEE Q ss_conf 9997299987999 Q gi|254781049|r 345 AVKEVKINIPLVM 357 (398) Q Consensus 345 a~~~~~~~~pivv 357 (398) ++...+...+.|| T Consensus 253 ~l~~~G~~~~fVI 265 (348) T 1dys_A 253 AMRQRGLPTQFII 265 (348) T ss_dssp HHHTTTCCCEEEE T ss_pred HHHHCCCCCCEEE T ss_conf 9973788886488 No 130 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=38.38 E-value=17 Score=15.00 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=9.0 Q ss_pred EEECCCCHHH--HHHHHHHHHHHHH Q ss_conf 9963586132--8999999999999 Q gi|254781049|r 325 LINIFGGIMR--CDVLVKGILSAVK 347 (398) Q Consensus 325 liNifGGI~~--cd~vA~gii~a~~ 347 (398) .+=++-+++. .+.|++.|-+.++ T Consensus 370 ~LP~~~~Lt~~di~~Ii~~Ik~f~~ 394 (399) T 2oga_A 370 SLPIGPHLERPQALRVIDAVREWAE 394 (399) T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 7868999899999999999999999 No 131 >2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Probab=37.86 E-value=13 Score=15.63 Aligned_cols=54 Identities=9% Similarity=0.188 Sum_probs=24.8 Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHH Q ss_conf 9899999999986199865899963586132899999999999972--9998799974898589 Q gi|254781049|r 304 DQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEV--KINIPLVMRLEGANVD 365 (398) Q Consensus 304 ~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~--~~~~pivvRl~Gtn~~ 365 (398) +.+.+.++|+-+++++++-.|+|+ +.+|+-|-+.+.+. +...|+|+-+.|.... T Consensus 37 ~~ee~~~~l~~ll~~~~~gII~It--------e~~~~~i~~~l~~~~~~~~~P~ii~IP~~~g~ 92 (102) T 2i4r_A 37 SDEEIVKAVEDVLKRDDVGVVIMK--------QEYLKKLPPVLRREIDEKVEPTFVSVGGTGGV 92 (102) T ss_dssp SHHHHHHHHHHHHHCSSEEEEEEE--------GGGSTTSCHHHHTTTTTCCSSEEEEEC----- T ss_pred CHHHHHHHHHHHHCCCCEEEEEEE--------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 989999999999607985899971--------89998868999999757885579996998898 No 132 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=37.47 E-value=9 Score=16.74 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=25.7 Q ss_pred HHHHHHHHHCCCCCCEE----------EECCCCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCC Q ss_conf 99999999729998799----------974898589999999976-995899499899999999985069 Q gi|254781049|r 340 KGILSAVKEVKINIPLV----------MRLEGANVDIGNRLIAES-GLNVITAIDLDDAAQKIVHAVKGV 398 (398) Q Consensus 340 ~gii~a~~~~~~~~piv----------vRl~Gtn~~~g~~il~~~-g~~~~~~~~~~~A~~~~v~~~k~v 398 (398) .-+++++++.++..... -.+.-.+...+.++-+.. .||++..- .++-+.++++..|.+ T Consensus 321 d~l~~~L~~~gI~~~~~~~plh~~~~y~~~~~~~~p~a~~l~~~~l~LP~~~~l-t~~di~~Ii~~ik~i 389 (391) T 3dr4_A 321 DQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGL-TEADIDRVIAALDQV 389 (391) T ss_dssp HHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTC-CHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCEEEECCCHHHCHHHHHCCCCCCHHHHHHHHCEEECCCCCCC-CHHHHHHHHHHHHHH T ss_conf 999999997799867627654429887746889997999998297993699999-999999999999998 No 133 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Probab=37.27 E-value=17 Score=14.89 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=56.6 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 24884278889899999999986199865899963586132899999999999972999879997489858999999997 Q gi|254781049|r 294 ANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAE 373 (398) Q Consensus 294 ANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~ 373 (398) ..+.|-.-.++.+.+..|++-. ++-+.++ ++||.-+-....+ +...+. +.. -++= -|...+.=.+.+.+ T Consensus 323 ~~iidD~~~~~~~s~~~al~~~---~~~~ii~--i~gg~~~~~~~~~-l~~~~~--~~~--~~ii-~g~~~~~i~~~~~~ 391 (451) T 3lk7_A 323 ISFYNDSKSTNILATQKALSGF---DNTKVIL--IAGGLDRGNEFDE-LIPDIT--GLK--HMVV-LGESASRVKRAAQK 391 (451) T ss_dssp EEEEECTTCCSHHHHHHHHHTS---CGGGEEE--EECCSCCSCCCGG-GHHHHT--TCS--EEEE-CSTTHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHC---CCCCEEE--ECCCCCCCCCHHH-HHHHHH--CCC--EEEE-ECCCHHHHHHHHHH T ss_conf 6999567741699999999747---7887289--8078556665999-999986--698--8999-79998999999986 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHC Q ss_conf 699589949989999999998506 Q gi|254781049|r 374 SGLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 374 ~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) .+.++..+.|+++|++++.+.++. T Consensus 392 ~~~~~~~~~d~~eAi~~a~~~~~~ 415 (451) T 3lk7_A 392 AGVTYSDALDVRDAVHKAYEVAQQ 415 (451) T ss_dssp TTCCEEECSSHHHHHHHHHHHCCT T ss_pred CCCCEEECCCHHHHHHHHHHHCCC T ss_conf 699689749999999999985899 No 134 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=36.87 E-value=18 Score=14.85 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=68.1 Q ss_pred CCEEEEECCCHHHH-----HHHHHHHHCCCCC--CEEEECCCCCCHHHHHHH-HHHHHCCCCCCEEEEECCCCHHHHHHH Q ss_conf 81799955503689-----9999999658996--248842788898999999-999861998658999635861328999 Q gi|254781049|r 267 GNIGCMVNGAGLAM-----ATMDIIKLYGGAP--ANFLDVGGGADQDKVAAA-FKIITSDSSVKGILINIFGGIMRCDVL 338 (398) Q Consensus 267 G~Ig~~vnGaGlam-----atmD~i~~~Gg~p--ANFlD~gG~a~~e~~~~a-~~~il~~~~vk~iliNifGGI~~cd~v 338 (398) .+|+++........ ...+....++..+ ..+.+.... +.+..+.+ .+++...|.+.+||. ..|.+ T Consensus 179 r~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ai~~-------~~d~~ 250 (339) T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPS-SMQMGADMLDRALAERPDCDALFC-------CNDDL 250 (339) T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCC-CHHHHHHHHHHHHHHCTTCCEEEE-------SSHHH T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCH-HHHHHHHHHHHHHHCCCCCCEEEE-------CCHHH T ss_conf 7499852777520568889999999974897678600036623-777788899999846999838997-------57299 Q ss_pred HHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH Q ss_conf 9999999997299987---99974898589999999976995899499899999999985 Q gi|254781049|r 339 VKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 (398) Q Consensus 339 A~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~ 395 (398) |.|+++|+++.+..+| .|+=..++..- +.+ ...+.- ...+.++.+.+|+++. T Consensus 251 a~g~~~al~~~gl~vp~di~Vigfd~~~~~---~~~-~p~ltt-I~~~~~~~g~~Av~lL 305 (339) T 3h5o_A 251 AIGALARSQQLGIAVPERLAIAGFNDLQPA---AWC-TPPLTT-VATPRRDIGVHAAKAL 305 (339) T ss_dssp HHHHHHHHHHTTCCTTTTCEEECSBCCGGG---TTS-SSCCBE-EECCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHH---HHC-CCCCEE-EEECHHHHHHHHHHHH T ss_conf 999878999829999982799987880899---832-899579-9819999999999999 No 135 >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Probab=36.82 E-value=18 Score=14.84 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=15.0 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 881799955503689999999965899624884278 Q gi|254781049|r 266 DGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGG 301 (398) Q Consensus 266 dG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG 301 (398) +|++-++.-|+-=.-||.=.....-.+.-.|-|+.| T Consensus 190 ~G~ittLGRGGSD~TA~~lA~~l~A~~v~IwTDV~G 225 (449) T 2j0w_A 190 KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPG 225 (449) T ss_dssp TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSS T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 996645589963899999998488501676247560 No 136 >3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-2, NESG, structural genomics, PROT structure initiative; 2.20A {Corynebacterium glutamicum} Probab=33.37 E-value=20 Score=14.49 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=16.8 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 999999997299987999748985899999999 Q gi|254781049|r 340 KGILSAVKEVKINIPLVMRLEGANVDIGNRLIA 372 (398) Q Consensus 340 ~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~ 372 (398) ..|++++++ +.|+++-|++.+.++++|++. T Consensus 19 ~~i~~~lr~---~~~VivNl~~ld~~~aqRiiD 48 (87) T 3p04_A 19 QVIGGAFRD---GDAVVFDMSLLSREEARRIVD 48 (87) T ss_dssp HHHHHHHHT---TCCEEEECTTSCHHHHHHHHH T ss_pred HHHHHHHHC---CCEEEEECCCCCHHHHHHHHH T ss_conf 999999976---997999977899899777999 No 137 >1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Probab=33.14 E-value=14 Score=15.43 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=14.1 Q ss_pred HHHCCCCCCCCEEECCH Q ss_conf 99868988881574799 Q gi|254781049|r 12 LRKYNVPVAKGVVISSV 28 (398) Q Consensus 12 L~~~GIpvp~g~~a~s~ 28 (398) |...|+|||+|.++|+. T Consensus 34 L~~~GlpVPpGFvITa~ 50 (876) T 1vbg_A 34 MASIGLSVPPGFTVSTE 50 (876) T ss_dssp HHHTTCCCCCEEEECHH T ss_pred HHHCCCCCCCCEEHHHH T ss_conf 99882999999513699 No 138 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=33.07 E-value=20 Score=14.46 Aligned_cols=46 Identities=9% Similarity=0.103 Sum_probs=23.1 Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEC Q ss_conf 89999999965899624884278889899999999986199865899963 Q gi|254781049|r 279 AMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINI 328 (398) Q Consensus 279 amatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNi 328 (398) +-.....+...+.++...||+|||.-.- +..+.-..|+.+++.+.+ T Consensus 152 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~----~~~l~~~~p~~~~~~~Dl 197 (335) T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLF----GIAVAQHNPNAEIFGVDW 197 (335) T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHH----HHHHHHHCTTCEEEEEEC T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHH----HHHHHHHCCCCCEEEECC T ss_conf 9999987110068898799979996299----999998589877377446 No 139 >1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 2x0s_A Probab=32.85 E-value=15 Score=15.38 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.7 Q ss_pred HHHCCCCCCCCEEECC Q ss_conf 9986898888157479 Q gi|254781049|r 12 LRKYNVPVAKGVVISS 27 (398) Q Consensus 12 L~~~GIpvp~g~~a~s 27 (398) |...|+|||+|.++|+ T Consensus 35 L~~~GlPVPpGFvITa 50 (913) T 1h6z_A 35 MVNLGIPVPPGFTITT 50 (913) T ss_dssp HHHTTCCCCCEEEECH T ss_pred HHHCCCCCCCCEEEHH T ss_conf 9978399999887339 No 140 >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} Probab=32.45 E-value=17 Score=14.90 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=58.3 Q ss_pred CHHHHHHHHHH-HHCCCCCCEEEECCCC------CCHHHHHHHHHH-HHCCCCCCEEEEECC------------CCHHHH Q ss_conf 03689999999-9658996248842788------898999999999-861998658999635------------861328 Q gi|254781049|r 276 AGLAMATMDII-KLYGGAPANFLDVGGG------ADQDKVAAAFKI-ITSDSSVKGILINIF------------GGIMRC 335 (398) Q Consensus 276 aGlamatmD~i-~~~Gg~pANFlD~gG~------a~~e~~~~a~~~-il~~~~vk~iliNif------------GGI~~c 335 (398) -|=++.-||.. ..+.++| .|-.|. .+.+.+.+.++. -++.+-.|..=-+.| .++... T Consensus 190 ~GPgN~LiD~~~~~~~~~~---~D~~G~~A~~G~v~~~ll~~ll~~~~f~~~~PKS~~re~f~~~~~~~~~~~~~~l~~~ 266 (370) T 3cqy_A 190 TGPGNTLIDAWVQQVKNES---YDKNGAWAASGKTDPQLLAQLLSHPYFSLAYPKSTGRELFNQAWLEQQLSAFNQLNEE 266 (370) T ss_dssp EEESSHHHHHHHHHHHCCS---SCGGGHHHHHSCCCHHHHHHHHTCGGGGSCSSCCCCSSSSSHHHHHHHTTTCTTSCHH T ss_pred CCCCHHHHHHHHHHHHCCC---CCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCHH T ss_conf 4751368999999975988---3857232058858889999998643102567552033115532015565420247806 Q ss_pred HH-------HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHC--CCCEEEECC------HHHHHHHHH Q ss_conf 99-------9999999999729998799974898589999999976--995899499------899999999 Q gi|254781049|r 336 DV-------LVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAES--GLNVITAID------LDDAAQKIV 392 (398) Q Consensus 336 d~-------vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~--g~~~~~~~~------~~~A~~~~v 392 (398) |. .|+.|.++++.......++|-=.|..-..=.+.|++. +.++.+.++ +-||.--|. T Consensus 267 D~~aTl~~~ta~sI~~~~~~~~~~~~~iv~GGG~~N~~L~~~l~~~l~~~~v~~~~~~gi~~d~~EA~~FA~ 338 (370) T 3cqy_A 267 DIQSTLLDLTCHSIAQDILKLAQEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAFAW 338 (370) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHH T ss_conf 789999999999999999972368846998999768999999997678986852899399846999999999 No 141 >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=31.84 E-value=21 Score=14.33 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=44.0 Q ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHC--CCCEEEECCHH Q ss_conf 99998619986589996358613289999999999997299987---99974898589999999976--99589949989 Q gi|254781049|r 311 AFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAES--GLNVITAIDLD 385 (398) Q Consensus 311 a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~--g~~~~~~~~~~ 385 (398) .+..+-+.+.+.+|+ +.-|.+|.|+++++++.+.++| -|+-..+.. +.+.. .+.. ...+.+ T Consensus 183 ~~~~~~~~~~~~aii-------~~~d~~a~g~~~~l~~~g~~ip~dv~vvg~d~~~------~~~~~~p~ltt-i~~~~~ 248 (295) T 3hcw_A 183 LHTRLKDPNIKQAII-------SLDAMLHLAILSVLYELNIEIPKDVMTATFNDSY------LTEIASPPQTC-IDIKPR 248 (295) T ss_dssp HHHHHTCTTSCEEEE-------ESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCSH------HHHTSSSCCEE-EECCHH T ss_pred HHHHHCCCCCCCCCC-------CCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHH------HHHHCCCCCEE-EEECHH T ss_conf 777641477764345-------5778999999999998699889461444148868------99713899369-997999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999985 Q gi|254781049|r 386 DAAQKIVHAV 395 (398) Q Consensus 386 ~A~~~~v~~~ 395 (398) +..++|+++. T Consensus 249 ~~g~~av~~L 258 (295) T 3hcw_A 249 MLGQQAGSAI 258 (295) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 142 >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Probab=31.01 E-value=22 Score=14.24 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=64.3 Q ss_pred HHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC-EEEEECCCCH Q ss_conf 577539864422881799955503689999999965899624884278889899999999986199865-8999635861 Q gi|254781049|r 254 EAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVK-GILINIFGGI 332 (398) Q Consensus 254 ~A~~~~l~yv~LdG~Ig~~vnGaGlamatmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk-~iliNifGGI 332 (398) ++-..||..+.+.|+--.+-.| |-=++|+.- |++.+...++.+....+-+ .++ |||.. T Consensus 324 ~~i~~gL~~~~~pGR~e~i~~~-----------------~~viiD~AH--Np~a~~~ll~~l~~~~~~~~ii~--V~G~~ 382 (487) T 2vos_A 324 DAVRAGFAAVTSPGRLERMRSA-----------------PTVFIDAAH--NPAGASALAQTLAHEFDFRFLVG--VLSVL 382 (487) T ss_dssp HHHHHHHHTCCCTTSSEEEETT-----------------TEEEECCCC--SHHHHHHHHHHHHHSCCCSEEEE--EECCB T ss_pred HHHHHHHHHCCCCCCCEECCCC-----------------CEEEEECCC--CHHHHHHHHHHHHHHCCCCCEEE--EEECC T ss_conf 9999987641478864302579-----------------769994587--98999999998998658997899--99606 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCC---HHHHHHHHHH--CCCCEEEECCHHHHHHHHHHHHH Q ss_conf 3289999999999997299987999748985---8999999997--69958994998999999999850 Q gi|254781049|r 333 MRCDVLVKGILSAVKEVKINIPLVMRLEGAN---VDIGNRLIAE--SGLNVITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 333 ~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn---~~~g~~il~~--~g~~~~~~~~~~~A~~~~v~~~k 396 (398) -.=| ...+++.+.+. .+.-+++....++ .++=.+.+.+ ..-++..++++.+|.++|.++++ T Consensus 383 ~dKD--~~~~l~~l~~~-~d~viit~~~~pR~~~~~~l~~~~~~~~~~~~v~~~~~~~eAi~~A~~~a~ 448 (487) T 2vos_A 383 GDKD--VDGILAALEPV-FDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVD 448 (487) T ss_dssp TTBC--HHHHHHHHTTT-CSEEEECCCSCTTBCCHHHHHHHHHHHHCGGGEEECSSHHHHHHHHHHHHH T ss_pred CCCC--HHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH T ss_conf 9959--99999998854-899999689996779999999999863787647991899999999999765 No 143 >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Probab=30.85 E-value=19 Score=14.56 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=17.7 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHH Q ss_conf 9999999986898888157479999 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHA 30 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~e 30 (398) .++|++|.++|||.-.-.+-.+++. T Consensus 15 ~~ak~~L~~~~i~y~~~di~~~~~~ 39 (82) T 1fov_A 15 HRAKALLSSKGVSFQELPIDGNAAK 39 (82) T ss_dssp HHHHHHHHHHTCCCEEEECTTCSHH T ss_pred HHHHHHHHHCCCCEEEEECCCCHHH T ss_conf 9999999866995799846777899 No 144 >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron transport, structural genomics; NMR {Brucella melitensis} Probab=30.43 E-value=22 Score=14.17 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=20.6 Q ss_pred HHHHHHHHHCCCCCCCCEEECCHHHHHHHHH-HCCCC Q ss_conf 9999999986898888157479999999998-72998 Q gi|254781049|r 6 YQAKALLRKYNVPVAKGVVISSVHAAESAIK-TLPGP 41 (398) Q Consensus 6 yqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~-~ig~p 41 (398) ..+|++|.+.||+...-.+-.+++ +..... .-|.+ T Consensus 20 ~~ak~lL~~~~i~y~~~di~~~~~-~~~~~~~~~g~~ 55 (92) T 2khp_A 20 ARAKALLARKGAEFNEIDASATPE-LRAEMQERSGRN 55 (92) T ss_dssp HHHHHHHHHTTCCCEEEESTTSHH-HHHHHHHHHTSS T ss_pred HHHHHHHHHCCCCCEEEECCCCHH-HHHHHHHHCCCC T ss_conf 999999996599809982678878-999999980997 No 145 >3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A* Probab=29.77 E-value=16 Score=15.02 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=7.6 Q ss_pred CCEEECCCCEEEE Q ss_conf 8644228817999 Q gi|254781049|r 260 LSYIALDGNIGCM 272 (398) Q Consensus 260 l~yv~LdG~Ig~~ 272 (398) +.|+.-+++..+. T Consensus 184 vtyid~~~~~~t~ 196 (237) T 3fvh_A 184 VTYIDEKRDFRTY 196 (237) T ss_dssp EEEECTTCCEEEE T ss_pred EEEECCCCCEEEE T ss_conf 9998179976798 No 146 >2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A Probab=29.71 E-value=23 Score=14.09 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=19.8 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHH Q ss_conf 7888989999999998619986589996358613 Q gi|254781049|r 300 GGGADQDKVAAAFKIITSDSSVKGILINIFGGIM 333 (398) Q Consensus 300 gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~ 333 (398) .++.+.+...+.++-+++++....+ ....||+. T Consensus 292 ~~s~~~e~A~~fl~~l~s~~~~~~~-~~~~~g~p 324 (408) T 2uvj_A 292 KSTKHPQESAMLINFLLNSKEGVEA-LGLERGVP 324 (408) T ss_dssp TTCSCHHHHHHHHHHHHTSHHHHHH-HTTTTSSC T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHH-HHHCCCCC T ss_conf 6887899999999997788999999-99749988 No 147 >3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Enterococcus faecalis V583} Probab=28.40 E-value=24 Score=13.95 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=70.9 Q ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCC---C--EEEEECCCCHHHHHH Q ss_conf 881799955503--68999999996589-962488427888989999999998619986---5--899963586132899 Q gi|254781049|r 266 DGNIGCMVNGAG--LAMATMDIIKLYGG-APANFLDVGGGADQDKVAAAFKIITSDSSV---K--GILINIFGGIMRCDV 337 (398) Q Consensus 266 dG~Ig~~vnGaG--lamatmD~i~~~Gg-~pANFlD~gG~a~~e~~~~a~~~il~~~~v---k--~iliNifGGI~~cd~ 337 (398) +-+||+++-+-| +|-...+.++..-| .+.-..|+.-..+.+...+.++-.....++ + .||.-+||| +.|-. T Consensus 2 ~~~Igili~sHG~~~A~~l~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gvLILtDL~gg-tp~n~ 80 (139) T 3gdw_A 2 NANVGVFVLMHGDSTASSMLKTAQELLGTSIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGSL-NSFGN 80 (139) T ss_dssp CCCCEEEEEEESSSHHHHHHHHHHHHHTCCCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGG-GGHHH T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC-CHHHH T ss_conf 99674998879888999999999998499876378735999989999999999997514889877999857887-37999 Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH Q ss_conf 999999999972999879997489858999999997699589949989999999998 Q gi|254781049|r 338 LVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHA 394 (398) Q Consensus 338 vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~~~~~~~~A~~~~v~~ 394 (398) ... . .. +.|+.+ .+|.|-....+........ .++++-+..+-.. T Consensus 81 ~~~----~--~~--~~~v~v-isG~Nlpmllea~~~~~~~----~~l~ei~~~i~~~ 124 (139) T 3gdw_A 81 MLF----E--ET--GIRTKA-ITMTSTMIVLEAIRMASVG----RSLEDIYQNIQLS 124 (139) T ss_dssp HHH----H--HH--CCCEEE-ECSCCHHHHHHHHHHHHTT----CCHHHHHHHHHHH T ss_pred HHH----H--HH--CCCEEE-EECCCHHHHHHHHHHHHCC----CCHHHHHHHHHHH T ss_conf 999----8--61--888588-7067789999999998734----8899999999999 No 148 >1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Probab=27.67 E-value=20 Score=14.45 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=18.7 Q ss_pred CCEEECCCCCCCE----EEEEEEEEECCCCCEEE Q ss_conf 3011034555650----58999998347780489 Q gi|254781049|r 104 NCVYVEDGADILR----ELYLSLLVDRTSGMVAF 133 (398) Q Consensus 104 ~~vLVEe~v~~~~----E~ylgi~~Dr~~~~~vi 133 (398) -.+.|+.|+.... ---+.+++||.++..-. T Consensus 234 lav~Vq~MV~~~~~~~s~sGv~ft~dp~tg~~~~ 267 (873) T 1kbl_A 234 TAVNVQTMVFGNKGETSGTGVAFTRNPSTGEKGI 267 (873) T ss_dssp CEEEEEECCCTTSSTTCEEEEEEEECTTTCCEEE T ss_pred HEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCC T ss_conf 0037997530377875566358854788887663 No 149 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=27.56 E-value=25 Score=13.85 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=36.0 Q ss_pred CCCCEEEECCCCCH-HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC Q ss_conf 99879997489858-999999997699589949989999999998506 Q gi|254781049|r 351 INIPLVMRLEGANV-DIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 (398) Q Consensus 351 ~~~pivvRl~Gtn~-~~g~~il~~~g~~~~~~~~~~~A~~~~v~~~k~ 397 (398) ..+|+|..-+.+-. -.+-.+|+..|++=.++.|.++-+.+||.++.. T Consensus 475 ~GvPvvTl~g~~~~~R~~as~L~~~gl~e~ia~~~~~Yv~~a~~la~d 522 (568) T 2vsy_A 475 TGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASD 522 (568) T ss_dssp TTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHC T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 799989777898405489999997799500369999999999999649 No 150 >2ols_A Phosphoenolpyruvate synthase; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Neisseria meningitidis MC58} Probab=26.26 E-value=20 Score=14.53 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=30.3 Q ss_pred ECCHHHHHHHHHHHC----CCCCCCCCC--CC-CCCCCCCEEECCCCCCCEE-EEEEEEEECCCCCE Q ss_conf 589999999999861----876544212--22-2244330110345556505-89999983477804 Q gi|254781049|r 73 ESSLKSVISDIREIL----GSTLITKQT--GP-TGSRVNCVYVEDGADILRE-LYLSLLVDRTSGMV 131 (398) Q Consensus 73 ~~s~~ea~~~a~~il----g~~l~t~qt--~~-~G~~v~~vLVEe~v~~~~E-~ylgi~~Dr~~~~~ 131 (398) +...+++.++.++.+ +.+.+.... +- ....--.|+|++|+..... -=+.++.||.++.+ T Consensus 148 v~~~e~l~~AIk~VwaS~~s~rA~~YR~~~gi~~~~~~mAV~VQ~mV~~d~~~sGV~FT~nP~tg~~ 214 (794) T 2ols_A 148 INGLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYD 214 (794) T ss_dssp ECSHHHHHHHHHHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCC T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC T ss_conf 8878999999999985577689999999769993068788888864302356517998327888976 No 151 >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Probab=26.11 E-value=19 Score=14.61 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999998506 Q gi|254781049|r 385 DDAAQKIVHAVKG 397 (398) Q Consensus 385 ~~A~~~~v~~~k~ 397 (398) ++-++++++..+. T Consensus 347 ~~ei~~I~~~l~~ 359 (367) T 3nyt_A 347 TASIKIICAALTN 359 (367) T ss_dssp HHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999946 No 152 >2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125} Probab=23.57 E-value=29 Score=13.38 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 99999999899995597 Q gi|254781049|r 187 GGDLFPNLYKAFCDKDM 203 (398) Q Consensus 187 ~~~ii~~L~~~f~e~Da 203 (398) ..+.+..|-++|.+.+. T Consensus 59 ~~~~i~~le~ll~~e~i 75 (171) T 2rbd_A 59 MQDENHQLEELLRSNGV 75 (171) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999998799 No 153 >2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} Probab=23.56 E-value=29 Score=13.37 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=36.0 Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 445789578887887519888998859999999989999559751023267 Q gi|254781049|r 161 PLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPL 211 (398) Q Consensus 161 ~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPL 211 (398) +...++..++..+....+.+.........++..+++.-.+.+ +++.||. T Consensus 43 ~l~~It~~~i~~~l~~~~~s~~t~~~~~~~l~~~f~~Av~~~--~i~~NP~ 91 (108) T 2kob_A 43 SLSEILPADIQSIINETKLAKNTLKAIRNTASQIFRLAIENR--AIDFNPA 91 (108) T ss_dssp BGGGCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT--SSSSCGG T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHH T ss_conf 199987889999998733266899999999999999999888--8022916 No 154 >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} Probab=23.53 E-value=29 Score=13.37 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=46.9 Q ss_pred CCCCHHHHHHHHHHHH---CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC---EEEECCCCCHHHHHHHHHHC Q ss_conf 8889899999999986---19986589996358613289999999999997299987---99974898589999999976 Q gi|254781049|r 301 GGADQDKVAAAFKIIT---SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP---LVMRLEGANVDIGNRLIAES 374 (398) Q Consensus 301 G~a~~e~~~~a~~~il---~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p---ivvRl~Gtn~~~g~~il~~~ 374 (398) ...+.+....+...+. ..+++.+++ ..+|.+|.|+++++++.+.++| -|+-..+...- +.. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~-------~~~d~~A~gv~~~l~~~g~~vp~disvig~d~~~~~------~~~ 232 (287) T 3bbl_A 166 GEGTFEVGRAMTLHLLDLSPERRPTAIM-------TLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAPMV------QYL 232 (287) T ss_dssp CCSSHHHHHHHHHHHHTSCTTTSCSEEE-------ESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCTTG------GGS T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEE-------ECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHH------HHC T ss_conf 5675568999999999746679975999-------887788899999999859998865023303876899------724 Q ss_pred CCCE-EEECCHHHHHHHHHHHH Q ss_conf 9958-99499899999999985 Q gi|254781049|r 375 GLNV-ITAIDLDDAAQKIVHAV 395 (398) Q Consensus 375 g~~~-~~~~~~~~A~~~~v~~~ 395 (398) ..++ ....+.++..++||++. T Consensus 233 ~p~lttI~~~~~~~g~~av~~L 254 (287) T 3bbl_A 233 FPPLSSVRQPIAEAGRKCIELL 254 (287) T ss_dssp SSCCEEEECCHHHHHHHHHHHH T ss_pred CCCCEEEEECHHHHHHHHHHHH T ss_conf 8996699829999999999999 No 155 >1o0p_A Splicing factor U2AF 65 kDa subunit; non-canonical RNA recognition motif, 4-stranded anti- parallel beta-sheet; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1opi_A Probab=21.77 E-value=32 Score=13.14 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=34.3 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE-ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECC Q ss_conf 9986999712136876565655677777770799-58999999999986187654421222224433011034 Q gi|254781049|r 39 PGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRV-ESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVED 110 (398) Q Consensus 39 g~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l-~~s~~ea~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe 110 (398) .+.. |++..|.-- .+.......|-|-+ ..++++|..+...|=|+.. .|..|..-++.+ T Consensus 37 k~G~-V~~v~I~~~------~~~~~~~~~g~vfV~F~~~e~A~~A~~~l~Gr~f-------~GR~v~~~~~~~ 95 (104) T 1o0p_A 37 KYGL-VKSIEIPRP------VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF-------ANRVVVTKYCDP 95 (104) T ss_dssp TTSC-EEEEECCCC------TTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCS-------SSSCCEEEEECH T ss_pred CCCC-EEEEEEEEC------CCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEE-------CCEEEEEEECCH T ss_conf 5687-889999755------8888767743999996999999999999789996-------995899998187 No 156 >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} Probab=20.96 E-value=33 Score=13.04 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=71.9 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEECC Q ss_conf 9999996589962488427888989999999998619986589996358613289999999999997299-987999748 Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKI-NIPLVMRLE 360 (398) Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~-~~pivvRl~ 360 (398) -.+++..+|.+ -.++|-..+.+.+.++.+- .++..|.+...- +........+++.+++.+. ++||++ . T Consensus 38 va~~l~~~G~e---V~~LG~~~p~e~~v~~a~~----~~~d~v~lS~~~--~~~~~~~~~~i~~L~~~g~~~i~i~v--G 106 (161) T 2yxb_A 38 VARALRDAGFE---VVYTGLRQTPEQVAMAAVQ----EDVDVIGVSILN--GAHLHLMKRLMAKLRELGADDIPVVL--G 106 (161) T ss_dssp HHHHHHHTTCE---EECCCSBCCHHHHHHHHHH----TTCSEEEEEESS--SCHHHHHHHHHHHHHHTTCTTSCEEE--E T ss_pred HHHHHHHCCCE---EEECCCCCCHHHHHHHHHH----CCCCEEEEECCC--CCCHHHHHHHHHHHHHCCCCCCEEEE--E T ss_conf 99999978988---9978977899999999986----699899985576--64489999999999975999987999--6 Q ss_pred CCCHHHHHHHHHHCCCCEEEE--CCHHHHHHHHHHHHH Q ss_conf 985899999999769958994--998999999999850 Q gi|254781049|r 361 GANVDIGNRLIAESGLNVITA--IDLDDAAQKIVHAVK 396 (398) Q Consensus 361 Gtn~~~g~~il~~~g~~~~~~--~~~~~A~~~~v~~~k 396 (398) |.=..+-.+.+++.|..-.+. .++++++..+.++.+ T Consensus 107 G~~~~~d~~~l~~~Gvd~vF~pgt~~~e~v~~l~~~~~ 144 (161) T 2yxb_A 107 GTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161) T ss_dssp ECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 68798889999977988884998999999999999999 No 157 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=20.87 E-value=33 Score=13.02 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=54.7 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCE Q ss_conf 27888989999999998619986589996358613289999999999997299987999748985899999999769958 Q gi|254781049|r 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNV 378 (398) Q Consensus 299 ~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~ 378 (398) +-|.++...+.+-+.+ .+.+++++. +.-|....-++...++..++.++++|....... +.|+.+|.+. T Consensus 54 i~GD~~~~~~L~~a~i----~~a~~vi~~-----t~~d~~n~~~~l~~r~~~~~~~iia~~~~~~~~---~~l~~~G~d~ 121 (153) T 1id1_A 54 IPGDSNDSSVLKKAGI----DRCRAILAL-----SDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNL---NKIKMVHPDI 121 (153) T ss_dssp EESCTTSHHHHHHHTT----TTCSEEEEC-----SSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGH---HHHHTTCCSE T ss_pred EEECCCCHHHHHHCCC----CCCCEEEEC-----CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH---HHHHHCCCCE T ss_conf 9916799999975798----833899998-----698799999999999978998399998898999---9999779899 Q ss_pred EEECCHHHHHHHHHHHHH Q ss_conf 994998999999999850 Q gi|254781049|r 379 ITAIDLDDAAQKIVHAVK 396 (398) Q Consensus 379 ~~~~~~~~A~~~~v~~~k 396 (398) ... ....+++...++.. T Consensus 122 vi~-p~~~~a~~l~~~l~ 138 (153) T 1id1_A 122 ILS-PQLFGSEILARVLN 138 (153) T ss_dssp EEC-HHHHHHHHHHHHHT T ss_pred EEC-HHHHHHHHHHHHHC T ss_conf 998-89999999999847 No 158 >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Probab=20.75 E-value=33 Score=13.01 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=29.1 Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHH-HHHHHHHHHHHHHH Q ss_conf 88427888989999999998619986589996358613-28999999999999 Q gi|254781049|r 296 FLDVGGGADQDKVAAAFKIITSDSSVKGILINIFGGIM-RCDVLVKGILSAVK 347 (398) Q Consensus 296 FlD~gG~a~~e~~~~a~~~il~~~~vk~iliNifGGI~-~cd~vA~gii~a~~ 347 (398) =+=|||+.+++...+ +++.|+|.++|| ||-- .-+.-+ .|++|.+ T Consensus 206 ~ilYGGSV~~~N~~~----i~~~~~vDG~LV---G~ASl~~~~F~-~Ii~a~~ 250 (252) T 2btm_A 206 RIQYGGSVKPDNIRD----FLAQQQIDGALV---GGASLEPASFL-QLVEAGR 250 (252) T ss_dssp EEEEESSCCTTTHHH----HHTSTTCCEEEE---SGGGSSHHHHH-HHHHTTC T ss_pred CEEECCCCCHHHHHH----HHCCCCCCEEEE---CHHHCCHHHHH-HHHHHHC T ss_conf 189817788605999----956899885884---35656889999-9999860 No 159 >1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1 Probab=20.13 E-value=34 Score=12.92 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=11.7 Q ss_pred CCCCCHHHHHHHHHHHHCCC Q ss_conf 78889899999999986199 Q gi|254781049|r 300 GGGADQDKVAAAFKIITSDS 319 (398) Q Consensus 300 gG~a~~e~~~~a~~~il~~~ 319 (398) .+..+.+...+-++.+++.. T Consensus 300 ~~s~~~e~A~~fl~~l~s~e 319 (409) T 1eu8_A 300 KYSDNKALAWEFVKFVESYS 319 (409) T ss_dssp TTCSCHHHHHHHHHHHTSHH T ss_pred CCCCCHHHHHHHHHHHCCHH T ss_conf 67877999999999966999 Done!