RPSBLAST alignment for GI: 254781049 and conserved domain: TIGR01016

>gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G. Length = 386
 Score =  461 bits (1189), Expect = e-130
 Identities = 203/396 (51%), Positives = 275/396 (69%), Gaps = 10/396 (2%)

Query: 1   MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
           MN+HEYQAK +  KY +PV +G V +SV  AE     L     VVK+Q+HAGGRGK    
Sbjct: 1   MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKA--- 57

Query: 61  ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
                  GGV+V  S +   +   ++LG  L+T QT P G  VN + +E+  DI +E YL
Sbjct: 58  -------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYL 110

Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
           S+++DR++     +AST+GG+DIEEVA+  P+KI K  IDPL G+       +   L L+
Sbjct: 111 SIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLE 170

Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
           G+      D+   LY+ F + D SL+EINPL+I K+G L  LD+K++ DDNAL+RH D++
Sbjct: 171 GELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLE 230

Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
           E+RD S+ED RE+ AKQ  L+Y+ALDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG
Sbjct: 231 EMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290

Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
           GGA  ++V  A K++ SD SVK + INIFGGI RCD++ KG++ A+KEV +N+P+V+RLE
Sbjct: 291 GGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLE 350

Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVK 396
           G NV+ G +++AESGLN+I A  +++AA+K V A +
Sbjct: 351 GTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAAE 386