RPSBLAST alignment for GI: 254781049 and conserved domain: TIGR01016
>gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G. Length = 386
Score = 461 bits (1189), Expect = e-130
Identities = 203/396 (51%), Positives = 275/396 (69%), Gaps = 10/396 (2%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
MN+HEYQAK + KY +PV +G V +SV AE L VVK+Q+HAGGRGK
Sbjct: 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKA--- 57
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
GGV+V S + + ++LG L+T QT P G VN + +E+ DI +E YL
Sbjct: 58 -------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYL 110
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
S+++DR++ +AST+GG+DIEEVA+ P+KI K IDPL G+ + L L+
Sbjct: 111 SIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLE 170
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
G+ D+ LY+ F + D SL+EINPL+I K+G L LD+K++ DDNAL+RH D++
Sbjct: 171 GELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLE 230
Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
E+RD S+ED RE+ AKQ L+Y+ALDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG
Sbjct: 231 EMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290
Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
GGA ++V A K++ SD SVK + INIFGGI RCD++ KG++ A+KEV +N+P+V+RLE
Sbjct: 291 GGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLE 350
Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVK 396
G NV+ G +++AESGLN+I A +++AA+K V A +
Sbjct: 351 GTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAAE 386