RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >gnl|CDD|179088 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional. Length = 388 Score = 601 bits (1553), Expect = e-173 Identities = 227/398 (57%), Positives = 290/398 (72%), Gaps = 10/398 (2%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 MN+HEYQAK L KY VPV +G+V ++ A A + L G ++VVK+Q+HAGGRGK Sbjct: 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKA--- 57 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120 GGV++ S + ++ILG TL+T QTGP G VN V VE+GADI +E YL Sbjct: 58 -------GGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYL 110 Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180 S+++DR + V F+AST+GGMDIEEVA++ P+KI K+ IDPL G+ + L L Sbjct: 111 SIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQAREIAFKLGLP 170 Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 G+ + LYKAF +KD SL+EINPL++ K+G L LD+KI+FDDNAL+RH D+ Sbjct: 171 GEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDLA 230 Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300 ELRD+SEED E EA ++ L+Y+ LDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG Sbjct: 231 ELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290 Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 GGA ++VA AFKII SD +VK IL+NIFGGI RCDV+ +GI++AVKEV + +PLV+RLE Sbjct: 291 GGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLE 350 Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKGV 398 G NV++G +++AESGLN+I A LDDAAQK V A KG Sbjct: 351 GTNVELGKKILAESGLNIIAADTLDDAAQKAVEAAKGK 388 >gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G. Length = 386 Score = 461 bits (1189), Expect = e-130 Identities = 203/396 (51%), Positives = 275/396 (69%), Gaps = 10/396 (2%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 MN+HEYQAK + KY +PV +G V +SV AE L VVK+Q+HAGGRGK Sbjct: 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKA--- 57 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120 GGV+V S + + ++LG L+T QT P G VN + +E+ DI +E YL Sbjct: 58 -------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYL 110 Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180 S+++DR++ +AST+GG+DIEEVA+ P+KI K IDPL G+ + L L+ Sbjct: 111 SIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLE 170 Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 G+ D+ LY+ F + D SL+EINPL+I K+G L LD+K++ DDNAL+RH D++ Sbjct: 171 GELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLE 230 Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300 E+RD S+ED RE+ AKQ L+Y+ALDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG Sbjct: 231 EMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290 Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 GGA ++V A K++ SD SVK + INIFGGI RCD++ KG++ A+KEV +N+P+V+RLE Sbjct: 291 GGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLE 350 Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVK 396 G NV+ G +++AESGLN+I A +++AA+K V A + Sbjct: 351 GTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAAE 386 >gnl|CDD|184474 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional. Length = 392 Score = 432 bits (1112), Expect = e-122 Identities = 190/397 (47%), Positives = 261/397 (65%), Gaps = 10/397 (2%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 M+IHEYQAK LL + V V +G + S A + L G +VVK+QIH+G RGK Sbjct: 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKA--- 57 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120 GG+++ + V ++LG L+T QTGP G V VYVE I RELYL Sbjct: 58 -------GGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYL 110 Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180 ++DR S V IAS +GGM+IEE+A P+ I +++++P +G+ + L L Sbjct: 111 GFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQAREIAFGLGLD 170 Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 + Y+AF D D ++LEINPL++ K+ R+ LD+K+SFDDNAL+R +I Sbjct: 171 IKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA 230 Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300 E+RD S+ED RE +A +H LSY+ LDG+IGC+VNGAGLAMATMD+IKL GG PANFLDVG Sbjct: 231 EMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVG 290 Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 GGA ++VA AF+++ SD +VK IL+NIF GI RCD + +G++ A +EV I++PLV+RL Sbjct: 291 GGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLA 350 Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 G NV+ G +++AESGL +ITA L +AA+K V A KG Sbjct: 351 GTNVEEGRKILAESGLPIITADTLAEAAEKAVEAWKG 387 >gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional. Length = 422 Score = 423 bits (1089), Expect = e-119 Identities = 200/399 (50%), Positives = 266/399 (66%), Gaps = 6/399 (1%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTL--PGPLYVVKSQIHAGGRGKGR 58 +NIHEYQ L+ KY V V KG SS+ + A++ + VVKSQI AGGRG G Sbjct: 28 LNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87 Query: 59 FKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILREL 118 FK KGGV + K ++LG L+TKQTGP G VN VY+ + ++ E+ Sbjct: 88 FKN---GLKGGVHIVKKDK-AEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEM 143 Query: 119 YLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLE 178 Y ++L+DR S IA ++GG IE++A+ +P+KI K+ ID G+T ED A + D L Sbjct: 144 YFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLA 203 Query: 179 LQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLD 238 + R D + LYK FC D +++EINPL +G+L D+K++FDDNA +R + Sbjct: 204 PKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKE 263 Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLD 298 I LRD S+ED RE+ A + +L+YI LDG IGCMVNGAGLAMATMDIIKL+GG+PANFLD Sbjct: 264 IFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLD 323 Query: 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMR 358 VGG A + +V AFKI+TSD VK IL+NIFGGIM+CDV+ GI++A K+V + +PLV+R Sbjct: 324 VGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVR 383 Query: 359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 LEG NVD G R++ ESG+ +ITA DLDDAA+K V A+ Sbjct: 384 LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKALAI 422 >gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain. Length = 202 Score = 227 bits (581), Expect = 4e-60 Identities = 96/212 (45%), Positives = 126/212 (59%), Gaps = 10/212 (4%) Query: 2 NIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKE 61 N+HEYQAK +L KY VPV +G V S AE K L G +YVVK+Q+ AGGRGK Sbjct: 1 NLHEYQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA---- 56 Query: 62 LPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLS 121 GGV++ S + +E+LG L+TKQTGP G VN V VE+ DI RE YLS Sbjct: 57 ------GGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLS 110 Query: 122 LLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQG 181 +++DR S IAS++GG+DIEEVA P+ I K+ IDP G+T + L L+G Sbjct: 111 IVLDRASRGPVVIASSEGGVDIEEVAAKNPEAIIKVPIDPAKGLTPYQAREIAFKLGLEG 170 Query: 182 QARIDGGDLFPNLYKAFCDKDMSLLEINPLII 213 + D+ LYK F + D +L+EINPL+ Sbjct: 171 ELVKQAADIIKKLYKLFVEYDATLVEINPLVE 202 >gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase. Length = 423 Score = 60.6 bits (147), Expect = 8e-10 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 55/378 (14%) Query: 3 IHEYQAKALLRKY-------NVPVAKGVVISSVHAAESAIKT--LPGPLYVVKSQIHAGG 53 I EY +K LL+++ ++P+ V S E A K L VVK + G Sbjct: 6 IREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGK 65 Query: 54 RGKGRFKELPADSKGGVRVESSLKSVISDIREILGSTL-ITKQTGPTGSRVNCVYVEDGA 112 RGK G V + L V + ++E LG + + GP + VE Sbjct: 66 RGK----------SGLVALNLDLAQVATFVKERLGKEVEMGGCKGP----ITTFIVEPFV 111 Query: 113 DILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVAS 172 +E YLS++ DR ++F S GG++IEE K+ + + +TSE A Sbjct: 112 PHDQEFYLSIVSDRLGCSISF--SECGGIEIEENW----DKVKTIFLPTEAPLTSEICAP 165 Query: 173 LCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNA 232 L L L+ + +I + ++ F D D + LE+NP ++ +G LD + DD A Sbjct: 166 LIATLPLEIRGKI--EEFIKGVFAVFQDLDFTFLEMNPFTLV-DGEPYPLDMRGELDDTA 222 Query: 233 LYRHL----DIQ------ELRDVSEEDSREI-EAKQHNLSYIALD--GNIGCMVNGAGLA 279 +++ +I+ + +E + E +L + L+ G I MV G G + Sbjct: 223 AFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGAS 282 Query: 280 MATMDIIKLYGGAP--ANFLDVGGGADQDKVAAAFKII----TSDSSVKGILINIFGGIM 333 + D + G A N+ + G ++++V +++ T++ + + I GGI Sbjct: 283 VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIA 342 Query: 334 R-CDVLV--KGILSAVKE 348 DV GI+ A++E Sbjct: 343 NFTDVAATFNGIIRALRE 360 >gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional. Length = 420 Score = 34.7 bits (81), Expect = 0.043 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVK 46 AK + +Y +P A + A + + P VVK Sbjct: 106 AKDFMARYGIPTAAYETFTDAEEALAYLDEKGAP-IVVK 143 >gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. Length = 423 Score = 33.8 bits (78), Expect = 0.084 Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55 AK +++Y +P A+ V + A S I+ P VVK+ A G+G Sbjct: 108 AKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKG 155 >gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. Length = 447 Score = 33.1 bits (76), Expect = 0.12 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 13/151 (8%) Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCM---------VNGAGLAMATMDIIK-- 287 I+EL D++ S + K + ++ I G G + + A L+ AT + ++ Sbjct: 277 IEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNI 336 Query: 288 -LYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGIL-INIFGGIMRCDVLVKGILSA 345 + N +DV G A ++ A A K + D +V G++ + + + + KGI+ Sbjct: 337 LPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEG 396 Query: 346 VKEVKINIPLVMRLEGANVDIGNRLIAESGL 376 K+ + + G +VD R++ E+G+ Sbjct: 397 AKKSNEKPVVAGFMGGKSVDPAKRILEENGI 427 >gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional. Length = 727 Score = 32.4 bits (75), Expect = 0.23 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57 K LL VPV +G V++S A A + + P+ VVK G G+G Sbjct: 219 KRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPV-VVKPLD--GNHGRG 264 >gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. Length = 864 Score = 31.7 bits (72), Expect = 0.32 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55 K +L VPV +G V+ S A A + L P+ V+K GRG Sbjct: 218 KEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPV-VIKPYDGNHGRG 263 >gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase. Length = 434 Score = 30.9 bits (70), Expect = 0.66 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55 K L KY +P AK + AA+ IK P+ VVK+ A G+G Sbjct: 107 KDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPI-VVKADGLAAGKG 152 >gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050 Score = 30.7 bits (70), Expect = 0.73 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57 + +++ PV + + SV A +A K + P+ +V+ GG G G Sbjct: 132 REAMKEIGEPVPESEIAHSVEEALAAAKEIGYPV-IVRPAFTLGGTGGG 179 >gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase. Length = 433 Score = 30.0 bits (68), Expect = 1.1 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Query: 27 SVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57 +VHA +A+ P+ ++ GG KG Sbjct: 319 NVHATLAALSAFDNPVILI-----VGGDDKG 344 >gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed. Length = 372 Score = 30.1 bits (69), Expect = 1.1 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKS 47 K L K +PVA V+ S E+A+ L P V+K+ Sbjct: 105 KQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPA-VLKT 142 >gnl|CDD|184892 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A''; Provisional. Length = 858 Score = 29.9 bits (67), Expect = 1.3 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Query: 265 LDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGI 324 D ++ N +G A T I+L G ++FL D +K F + V+G+ Sbjct: 283 FDLSVNEYENDSGFA--TGYDIRLNGTVLSDFLRNFCTDDGEKKIPDFAFGANKEFVRGL 340 Query: 325 LINIFGGIMRCDVLVKGIL--SAVKEVKINIPLVM 357 L F G K I S KE+ I L++ Sbjct: 341 LQGYFDGDGNVGTNKKAIRISSTSKELIDGISLLL 375 >gnl|CDD|178249 PLN02643, PLN02643, ADP-glucose phosphorylase. Length = 336 Score = 29.7 bits (67), Expect = 1.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 99 TGSRVNCVYVEDGADILRELYLS 121 TG +N V+ ED A +LRE+ L Sbjct: 313 TGCYINPVFPEDAAKVLREVNLP 335 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 29.2 bits (66), Expect = 1.8 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 +AL+++ PV + +++SV A + + + P+ V + GG G G + Sbjct: 133 RALMKELGEPVPESEIVTSVEEALAFAEKIGFPIIVRPAY-TLGGTGGGIAE 183 >gnl|CDD|152694 pfam12259, DUF3609, Protein of unknown function (DUF3609). This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length. Length = 361 Score = 29.0 bits (65), Expect = 1.9 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 210 PLIIMKNGRLRVLDSKISFDDNALYRHLD----IQELRDVSEEDSREIEAKQHNLSYIAL 265 P+ + NG+++++D++ + + HLD +Q L D E K + ++Y Sbjct: 100 PIPRLNNGKIQLVDTETPY--LGINDHLDRYFPLQNLDDCLELAPERFICKPNQITYGNG 157 Query: 266 DGNIGCMV 273 D ++ C + Sbjct: 158 DDSLPCSL 165 >gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. Length = 515 Score = 29.1 bits (65), Expect = 2.0 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELY 119 I + RE++ + I + +GS +Y+ D D LR++Y Sbjct: 34 IGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVY 73 >gnl|CDD|148504 pfam06920, Ded_cyto, Dedicator of cytokinesis. This family represents a conserved region approximately 200 residues long within a number of eukaryotic dedicator of cytokinesis proteins. These are potential guanine nucleotide exchange factors, which activate some small GTPases by exchanging bound GDP for free GTP. Length = 178 Score = 28.8 bits (65), Expect = 2.6 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 239 IQELRDVSEEDSREIEAKQHNLSYI--ALDGNIGCMVNGAGLAMA 281 I+++ + E + I N+ + L G++ VNG L A Sbjct: 68 IEDIEKKTAELAALISQYPPNIKTLQMLLQGSVDVQVNGGPLKYA 112 >gnl|CDD|179761 PRK04168, PRK04168, molybdate ABC transporter periplasmic substrate-binding protein; Provisional. Length = 334 Score = 28.4 bits (64), Expect = 3.7 Identities = 9/15 (60%), Positives = 9/15 (60%) Query: 255 AKQHNLSYIALDGNI 269 A QHNL YI L I Sbjct: 233 AVQHNLKYIELPDEI 247 >gnl|CDD|178625 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional. Length = 1780 Score = 27.9 bits (62), Expect = 4.4 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 7 QAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLY 43 + KA++ + N P SS A ++ +LPGPL+ Sbjct: 36 ECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLH 72 >gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional. Length = 379 Score = 27.8 bits (62), Expect = 5.4 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55 AK ++ KYN+P A + A + I+ P+ VVK A G+G Sbjct: 71 AKKIMEKYNIPTADYKEVERKKDALTYIENCELPV-VVKKDGLAAGKG 117 >gnl|CDD|162870 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. Length = 1050 Score = 27.4 bits (61), Expect = 6.4 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 103 VNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVA 147 V+C +D I++ ++ ++ +R G FI ST M I E+ Sbjct: 777 VDCYDDKDLLQIIKNIFEAVRKERMEGSSGFILST--SMTISEIQ 819 >gnl|CDD|150258 pfam09522, RE_R_Pab1, R.Pab1 restriction endonuclease. Length = 130 Score = 27.1 bits (60), Expect = 7.5 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 14/59 (23%) Query: 107 YVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGV 165 ++ED I RE F + GGMD E YP I + LI + Sbjct: 5 FLEDNFMITRE--------------RFRSHQFGGMDFYESRISYPLLIHSFDDNELIEI 49 >gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional. Length = 1638 Score = 26.8 bits (59), Expect = 9.3 Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 226 ISFDDNALYRHLDIQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDI 285 + F + + + I L+ + + + N + IGC++ + A D Sbjct: 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR 285 Query: 286 IKLY 289 +KLY Sbjct: 286 VKLY 289 >gnl|CDD|163442 TIGR03730, tungstate_WtpA, tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists. Length = 273 Score = 27.0 bits (60), Expect = 9.4 Identities = 8/15 (53%), Positives = 8/15 (53%) Query: 255 AKQHNLSYIALDGNI 269 A QH L YI L I Sbjct: 206 AVQHGLKYIELPDEI 220 >gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family consists of several Tenuivirus PVC2 proteins from Rice grassy stunt virus, Maize stripe virus and Rice hoja blanca virus. The function of this family is unknown. Length = 785 Score = 27.1 bits (60), Expect = 9.4 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 27/108 (25%) Query: 70 VRVESSLKSVISDI--------------REILGSTLIT--KQTGPTGSRVNCVYVEDGAD 113 ++V + K V+SD+ E G + T K T TGS +NC ++ G Sbjct: 661 IKVYTPSKRVLSDLLTCEDLASCSLTFNNEQKGECITTSYKSTS-TGSSINCKFMYSGDS 719 Query: 114 ILRELYLSLL--------VDRTSGMVAFIASTQGGMD-IEEVAKDYPQ 152 I+ + +S L +D +S STQ M + E+ +D P+ Sbjct: 720 IMCKYNVSPLEITVVSPKLDLSSFEAVK-ESTQNWMKFLAEIIRDNPK 766 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.138 0.385 Gapped Lambda K H 0.267 0.0687 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,415,430 Number of extensions: 428405 Number of successful extensions: 893 Number of sequences better than 10.0: 1 Number of HSP's gapped: 884 Number of HSP's successfully gapped: 40 Length of query: 398 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 303 Effective length of database: 3,941,713 Effective search space: 1194339039 Effective search space used: 1194339039 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.2 bits)