RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase
subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
>gnl|CDD|179088 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 601 bits (1553), Expect = e-173
Identities = 227/398 (57%), Positives = 290/398 (72%), Gaps = 10/398 (2%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
MN+HEYQAK L KY VPV +G+V ++ A A + L G ++VVK+Q+HAGGRGK
Sbjct: 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKA--- 57
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
GGV++ S + ++ILG TL+T QTGP G VN V VE+GADI +E YL
Sbjct: 58 -------GGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYL 110
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
S+++DR + V F+AST+GGMDIEEVA++ P+KI K+ IDPL G+ + L L
Sbjct: 111 SIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQAREIAFKLGLP 170
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
G+ + LYKAF +KD SL+EINPL++ K+G L LD+KI+FDDNAL+RH D+
Sbjct: 171 GEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDLA 230
Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
ELRD+SEED E EA ++ L+Y+ LDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG
Sbjct: 231 ELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290
Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
GGA ++VA AFKII SD +VK IL+NIFGGI RCDV+ +GI++AVKEV + +PLV+RLE
Sbjct: 291 GGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLE 350
Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKGV 398
G NV++G +++AESGLN+I A LDDAAQK V A KG
Sbjct: 351 GTNVELGKKILAESGLNIIAADTLDDAAQKAVEAAKGK 388
>gnl|CDD|162159 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This
family contains a split seen both in a maximum parsimony
tree (which ignores gaps) and in the gap pattern near
position 85 of the seed alignment. Eukaryotic and most
bacterial sequences are longer and contain a region
similar to TXQTXXXG. Sequences from Deinococcus
radiodurans, Mycobacterium tuberculosis, Streptomyces
coelicolor, and the Archaea are 6 amino acids shorter in
that region and contain a motif resembling [KR]G.
Length = 386
Score = 461 bits (1189), Expect = e-130
Identities = 203/396 (51%), Positives = 275/396 (69%), Gaps = 10/396 (2%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
MN+HEYQAK + KY +PV +G V +SV AE L VVK+Q+HAGGRGK
Sbjct: 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKA--- 57
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
GGV+V S + + ++LG L+T QT P G VN + +E+ DI +E YL
Sbjct: 58 -------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYL 110
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
S+++DR++ +AST+GG+DIEEVA+ P+KI K IDPL G+ + L L+
Sbjct: 111 SIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLE 170
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
G+ D+ LY+ F + D SL+EINPL+I K+G L LD+K++ DDNAL+RH D++
Sbjct: 171 GELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLE 230
Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
E+RD S+ED RE+ AKQ L+Y+ALDGNIGCMVNGAGLAMATMDIIKLYGG PANFLDVG
Sbjct: 231 EMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVG 290
Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
GGA ++V A K++ SD SVK + INIFGGI RCD++ KG++ A+KEV +N+P+V+RLE
Sbjct: 291 GGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLE 350
Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVK 396
G NV+ G +++AESGLN+I A +++AA+K V A +
Sbjct: 351 GTNVEEGKKILAESGLNIIFATSMEEAAEKAVEAAE 386
>gnl|CDD|184474 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional.
Length = 392
Score = 432 bits (1112), Expect = e-122
Identities = 190/397 (47%), Positives = 261/397 (65%), Gaps = 10/397 (2%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
M+IHEYQAK LL + V V +G + S A + L G +VVK+QIH+G RGK
Sbjct: 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKA--- 57
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
GG+++ + V ++LG L+T QTGP G V VYVE I RELYL
Sbjct: 58 -------GGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYL 110
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
++DR S V IAS +GGM+IEE+A P+ I +++++P +G+ + L L
Sbjct: 111 GFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQAREIAFGLGLD 170
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
+ Y+AF D D ++LEINPL++ K+ R+ LD+K+SFDDNAL+R +I
Sbjct: 171 IKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA 230
Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
E+RD S+ED RE +A +H LSY+ LDG+IGC+VNGAGLAMATMD+IKL GG PANFLDVG
Sbjct: 231 EMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVG 290
Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
GGA ++VA AF+++ SD +VK IL+NIF GI RCD + +G++ A +EV I++PLV+RL
Sbjct: 291 GGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLA 350
Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397
G NV+ G +++AESGL +ITA L +AA+K V A KG
Sbjct: 351 GTNVEEGRKILAESGLPIITADTLAEAAEKAVEAWKG 387
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta;
Provisional.
Length = 422
Score = 423 bits (1089), Expect = e-119
Identities = 200/399 (50%), Positives = 266/399 (66%), Gaps = 6/399 (1%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTL--PGPLYVVKSQIHAGGRGKGR 58
+NIHEYQ L+ KY V V KG SS+ + A++ + VVKSQI AGGRG G
Sbjct: 28 LNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGT 87
Query: 59 FKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILREL 118
FK KGGV + K ++LG L+TKQTGP G VN VY+ + ++ E+
Sbjct: 88 FKN---GLKGGVHIVKKDK-AEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEM 143
Query: 119 YLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLE 178
Y ++L+DR S IA ++GG IE++A+ +P+KI K+ ID G+T ED A + D L
Sbjct: 144 YFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLA 203
Query: 179 LQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLD 238
+ R D + LYK FC D +++EINPL +G+L D+K++FDDNA +R +
Sbjct: 204 PKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKE 263
Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLD 298
I LRD S+ED RE+ A + +L+YI LDG IGCMVNGAGLAMATMDIIKL+GG+PANFLD
Sbjct: 264 IFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLD 323
Query: 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMR 358
VGG A + +V AFKI+TSD VK IL+NIFGGIM+CDV+ GI++A K+V + +PLV+R
Sbjct: 324 VGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVR 383
Query: 359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397
LEG NVD G R++ ESG+ +ITA DLDDAA+K V A+
Sbjct: 384 LEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKALAI 422
>gnl|CDD|149489 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 227 bits (581), Expect = 4e-60
Identities = 96/212 (45%), Positives = 126/212 (59%), Gaps = 10/212 (4%)
Query: 2 NIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKE 61
N+HEYQAK +L KY VPV +G V S AE K L G +YVVK+Q+ AGGRGK
Sbjct: 1 NLHEYQAKEILAKYGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKA---- 56
Query: 62 LPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLS 121
GGV++ S + +E+LG L+TKQTGP G VN V VE+ DI RE YLS
Sbjct: 57 ------GGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLS 110
Query: 122 LLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQG 181
+++DR S IAS++GG+DIEEVA P+ I K+ IDP G+T + L L+G
Sbjct: 111 IVLDRASRGPVVIASSEGGVDIEEVAAKNPEAIIKVPIDPAKGLTPYQAREIAFKLGLEG 170
Query: 182 QARIDGGDLFPNLYKAFCDKDMSLLEINPLII 213
+ D+ LYK F + D +L+EINPL+
Sbjct: 171 ELVKQAADIIKKLYKLFVEYDATLVEINPLVE 202
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase.
Length = 423
Score = 60.6 bits (147), Expect = 8e-10
Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 55/378 (14%)
Query: 3 IHEYQAKALLRKY-------NVPVAKGVVISSVHAAESAIKT--LPGPLYVVKSQIHAGG 53
I EY +K LL+++ ++P+ V S E A K L VVK + G
Sbjct: 6 IREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGK 65
Query: 54 RGKGRFKELPADSKGGVRVESSLKSVISDIREILGSTL-ITKQTGPTGSRVNCVYVEDGA 112
RGK G V + L V + ++E LG + + GP + VE
Sbjct: 66 RGK----------SGLVALNLDLAQVATFVKERLGKEVEMGGCKGP----ITTFIVEPFV 111
Query: 113 DILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVAS 172
+E YLS++ DR ++F S GG++IEE K+ + + +TSE A
Sbjct: 112 PHDQEFYLSIVSDRLGCSISF--SECGGIEIEENW----DKVKTIFLPTEAPLTSEICAP 165
Query: 173 LCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNA 232
L L L+ + +I + ++ F D D + LE+NP ++ +G LD + DD A
Sbjct: 166 LIATLPLEIRGKI--EEFIKGVFAVFQDLDFTFLEMNPFTLV-DGEPYPLDMRGELDDTA 222
Query: 233 LYRHL----DIQ------ELRDVSEEDSREI-EAKQHNLSYIALD--GNIGCMVNGAGLA 279
+++ +I+ + +E + E +L + L+ G I MV G G +
Sbjct: 223 AFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGAS 282
Query: 280 MATMDIIKLYGGAP--ANFLDVGGGADQDKVAAAFKII----TSDSSVKGILINIFGGIM 333
+ D + G A N+ + G ++++V +++ T++ + + I GGI
Sbjct: 283 VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIA 342
Query: 334 R-CDVLV--KGILSAVKE 348
DV GI+ A++E
Sbjct: 343 NFTDVAATFNGIIRALRE 360
>gnl|CDD|179154 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 34.7 bits (81), Expect = 0.043
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVK 46
AK + +Y +P A + A + + P VVK
Sbjct: 106 AKDFMARYGIPTAAYETFTDAEEALAYLDEKGAP-IVVK 143
>gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme
appears as a monofunctional protein in prokaryotes but
as part of a larger, multidomain protein in eukaryotes.
Length = 423
Score = 33.8 bits (78), Expect = 0.084
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55
AK +++Y +P A+ V + A S I+ P VVK+ A G+G
Sbjct: 108 AKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGAPAIVVKADGLAAGKG 155
>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP
forming), alpha domain. Although technically
reversible, it is believed that this group of
ADP-dependent acetyl-CoA synthetases (ACS) act in the
direction of acetate and ATP production in the organisms
in which it has been characterized. In most species this
protein exists as a fused alpha-beta domain polypeptide.
In Pyrococcus and related species, however the domains
exist as separate polypeptides. This model represents
the alpha (N-terminal) domain. In Pyrococcus and related
species there appears to have been the development of a
paralogous family such that four other proteins are
close relatives. In reference, one of these (along with
its beta-domain partner) was characterized as ACS-II
showing specificity for phenylacetyl-CoA. This model has
been constructed to exclude these non-ACS-I paralogs.
This may result in new, authentic ACS-I sequences
falling below the trusted cutoff.
Length = 447
Score = 33.1 bits (76), Expect = 0.12
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCM---------VNGAGLAMATMDIIK-- 287
I+EL D++ S + K + ++ I G G + + A L+ AT + ++
Sbjct: 277 IEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNI 336
Query: 288 -LYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGIL-INIFGGIMRCDVLVKGILSA 345
+ N +DV G A ++ A A K + D +V G++ + + + + KGI+
Sbjct: 337 LPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEG 396
Query: 346 VKEVKINIPLVMRLEGANVDIGNRLIAESGL 376
K+ + + G +VD R++ E+G+
Sbjct: 397 AKKSNEKPVVAGFMGGKSVDPAKRILEENGI 427
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 32.4 bits (75), Expect = 0.23
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57
K LL VPV +G V++S A A + + P+ VVK G G+G
Sbjct: 219 KRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPV-VVKPLD--GNHGRG 264
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 31.7 bits (72), Expect = 0.32
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55
K +L VPV +G V+ S A A + L P+ V+K GRG
Sbjct: 218 KEILSDAGVPVPEGTVVQSAEDAWEAAQDLGYPV-VIKPYDGNHGRG 263
>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
Length = 434
Score = 30.9 bits (70), Expect = 0.66
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55
K L KY +P AK + AA+ IK P+ VVK+ A G+G
Sbjct: 107 KDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAPI-VVKADGLAAGKG 152
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. In several thermophilic species
(Methanobacterium thermoautotrophicum, Methanococcus
jannaschii, Aquifex aeolicus), the large subunit appears
split, at different points, into two separate genes.
Length = 1050
Score = 30.7 bits (70), Expect = 0.73
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57
+ +++ PV + + SV A +A K + P+ +V+ GG G G
Sbjct: 132 REAMKEIGEPVPESEIAHSVEEALAAAKEIGYPV-IVRPAFTLGGTGGG 179
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Length = 433
Score = 30.0 bits (68), Expect = 1.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 27 SVHAAESAIKTLPGPLYVVKSQIHAGGRGKG 57
+VHA +A+ P+ ++ GG KG
Sbjct: 319 NVHATLAALSAFDNPVILI-----VGGDDKG 344
>gnl|CDD|180352 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase
subunit; Reviewed.
Length = 372
Score = 30.1 bits (69), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKS 47
K L K +PVA V+ S E+A+ L P V+K+
Sbjct: 105 KQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPA-VLKT 142
>gnl|CDD|184892 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 29.9 bits (67), Expect = 1.3
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 265 LDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIITSDSSVKGI 324
D ++ N +G A T I+L G ++FL D +K F + V+G+
Sbjct: 283 FDLSVNEYENDSGFA--TGYDIRLNGTVLSDFLRNFCTDDGEKKIPDFAFGANKEFVRGL 340
Query: 325 LINIFGGIMRCDVLVKGIL--SAVKEVKINIPLVM 357
L F G K I S KE+ I L++
Sbjct: 341 LQGYFDGDGNVGTNKKAIRISSTSKELIDGISLLL 375
>gnl|CDD|178249 PLN02643, PLN02643, ADP-glucose phosphorylase.
Length = 336
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 99 TGSRVNCVYVEDGADILRELYLS 121
TG +N V+ ED A +LRE+ L
Sbjct: 313 TGCYINPVFPEDAAKVLREVNLP 335
>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 29.2 bits (66), Expect = 1.8
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 9 KALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
+AL+++ PV + +++SV A + + + P+ V + GG G G +
Sbjct: 133 RALMKELGEPVPESEIVTSVEEALAFAEKIGFPIIVRPAY-TLGGTGGGIAE 183
>gnl|CDD|152694 pfam12259, DUF3609, Protein of unknown function (DUF3609). This
domain family is found in eukaryotes and viruses, and is
typically between 348 and 360 amino acids in length.
Length = 361
Score = 29.0 bits (65), Expect = 1.9
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 210 PLIIMKNGRLRVLDSKISFDDNALYRHLD----IQELRDVSEEDSREIEAKQHNLSYIAL 265
P+ + NG+++++D++ + + HLD +Q L D E K + ++Y
Sbjct: 100 PIPRLNNGKIQLVDTETPY--LGINDHLDRYFPLQNLDDCLELAPERFICKPNQITYGNG 157
Query: 266 DGNIGCMV 273
D ++ C +
Sbjct: 158 DDSLPCSL 165
>gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set.
Length = 515
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELY 119
I + RE++ + I + +GS +Y+ D D LR++Y
Sbjct: 34 IGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVY 73
>gnl|CDD|148504 pfam06920, Ded_cyto, Dedicator of cytokinesis. This family
represents a conserved region approximately 200 residues
long within a number of eukaryotic dedicator of
cytokinesis proteins. These are potential guanine
nucleotide exchange factors, which activate some small
GTPases by exchanging bound GDP for free GTP.
Length = 178
Score = 28.8 bits (65), Expect = 2.6
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 239 IQELRDVSEEDSREIEAKQHNLSYI--ALDGNIGCMVNGAGLAMA 281
I+++ + E + I N+ + L G++ VNG L A
Sbjct: 68 IEDIEKKTAELAALISQYPPNIKTLQMLLQGSVDVQVNGGPLKYA 112
>gnl|CDD|179761 PRK04168, PRK04168, molybdate ABC transporter periplasmic
substrate-binding protein; Provisional.
Length = 334
Score = 28.4 bits (64), Expect = 3.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 255 AKQHNLSYIALDGNI 269
A QHNL YI L I
Sbjct: 233 AVQHNLKYIELPDEI 247
>gnl|CDD|178625 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
(ARF-GEF); Provisional.
Length = 1780
Score = 27.9 bits (62), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 7 QAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLY 43
+ KA++ + N P SS A ++ +LPGPL+
Sbjct: 36 ECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLH 72
>gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase;
Provisional.
Length = 379
Score = 27.8 bits (62), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRG 55
AK ++ KYN+P A + A + I+ P+ VVK A G+G
Sbjct: 71 AKKIMEKYNIPTADYKEVERKKDALTYIENCELPV-VVKKDGLAAGKG 117
>gnl|CDD|162870 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 27.4 bits (61), Expect = 6.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 103 VNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVA 147
V+C +D I++ ++ ++ +R G FI ST M I E+
Sbjct: 777 VDCYDDKDLLQIIKNIFEAVRKERMEGSSGFILST--SMTISEIQ 819
>gnl|CDD|150258 pfam09522, RE_R_Pab1, R.Pab1 restriction endonuclease.
Length = 130
Score = 27.1 bits (60), Expect = 7.5
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
Query: 107 YVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGV 165
++ED I RE F + GGMD E YP I + LI +
Sbjct: 5 FLEDNFMITRE--------------RFRSHQFGGMDFYESRISYPLLIHSFDDNELIEI 49
>gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional.
Length = 1638
Score = 26.8 bits (59), Expect = 9.3
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 226 ISFDDNALYRHLDIQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDI 285
+ F + + + I L+ + + + N + IGC++ + A D
Sbjct: 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR 285
Query: 286 IKLY 289
+KLY
Sbjct: 286 VKLY 289
>gnl|CDD|163442 TIGR03730, tungstate_WtpA, tungstate ABC transporter binding
protein WtpA. Members of this protein family are
tungstate (and, more weakly, molybdate) binding proteins
of tungstate(/molybdate) ABC transporters, as first
characterized in Pyrococcus furiosus. Model seed members
and cutoffs, pending experimental evidence for more
distant homologs, were chosen such that this model
identifies select archaeal proteins, excluding weaker
archaeal and all bacterial homologs. Note that this
family is homologous to molybdate transporters, and that
at least one other family of tungstate transporter
binding protein, TupA, also exists.
Length = 273
Score = 27.0 bits (60), Expect = 9.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 255 AKQHNLSYIALDGNI 269
A QH L YI L I
Sbjct: 206 AVQHGLKYIELPDEI 220
>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family
consists of several Tenuivirus PVC2 proteins from Rice
grassy stunt virus, Maize stripe virus and Rice hoja
blanca virus. The function of this family is unknown.
Length = 785
Score = 27.1 bits (60), Expect = 9.4
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 27/108 (25%)
Query: 70 VRVESSLKSVISDI--------------REILGSTLIT--KQTGPTGSRVNCVYVEDGAD 113
++V + K V+SD+ E G + T K T TGS +NC ++ G
Sbjct: 661 IKVYTPSKRVLSDLLTCEDLASCSLTFNNEQKGECITTSYKSTS-TGSSINCKFMYSGDS 719
Query: 114 ILRELYLSLL--------VDRTSGMVAFIASTQGGMD-IEEVAKDYPQ 152
I+ + +S L +D +S STQ M + E+ +D P+
Sbjct: 720 IMCKYNVSPLEITVVSPKLDLSSFEAVK-ESTQNWMKFLAEIIRDNPK 766
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.138 0.385
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,415,430
Number of extensions: 428405
Number of successful extensions: 893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 40
Length of query: 398
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 303
Effective length of database: 3,941,713
Effective search space: 1194339039
Effective search space used: 1194339039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)