HHsearch alignment for GI: 254781050 and conserved domain: TIGR02124
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=94.31 E-value=0.27 Score=28.62 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCEEEEECCCCCHHHHHH----HHHHHHCCCCEEEECCC-----------------CEEECCCC-HHCCEECCCCCCCCC
Q ss_conf 958998058846888999----99984017718940685-----------------10135551-000200112357786
Q gi|254781050|r 95 IPLIVCITEGIPVLDMVR----VKARLEKSSSRLIGPNC-----------------PGILTPDS-CKIGIMPGSIFRKGS 152 (300)
Q Consensus 95 ik~iviiteGip~~d~~~----l~~~A~~~g~riiGPNc-----------------~Gii~p~~-~~lgi~p~~~~~pG~ 152 (300)
T Consensus 94 Ls~gfIlEEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINTtGiG~~~~~~v~~---~~~~~~~~GD 170 (345)
T TIGR02124 94 LSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINTTGIGVVPSGGVID---ISAHNIQPGD 170 (345)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCC---CCCCCCCCCC
T ss_conf 5072013407876789999999999999739768975735334577560588138888874784337---6535414576
Q ss_pred EEEEEECCCHHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 799980541478999-99997199516764055674467899999999973998
Q gi|254781050|r 153 VGILSRSGTLTYEAV-FQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEA 205 (300)
Q Consensus 153 VgivSqSG~l~~e~~-~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~ 205 (300)
T Consensus 171 ~Ii~s--G~iG~HG~~Il~~Regl~f~~~i~SDCapL~~l----v~~ll~~~g~ 218 (345)
T TIGR02124 171 VIIVS--GSIGDHGAAILAVREGLGFETNIESDCAPLNGL----VEALLAVGGY 218 (345)
T ss_pred EEEEC--CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHHHHHCCCC
T ss_conf 68981--684067899887650255256733327765899----9999843798