HHsearch alignment for GI: 254781050 and conserved domain: TIGR02717

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=97.11  E-value=0.014  Score=36.76  Aligned_cols=247  Identities=21%  Similarity=0.244  Sum_probs=154.2

Q ss_pred             CCHHHHH----HHHHHHHHC----CCCEEEEECCC-CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             8437799----999998626----98189976589-98868727745775314078503578863688621204567889
Q gi|254781050|r   17 TGKAGTF----HTEQAILYC----QTQVVGGIHPK-KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI   87 (300)
Q Consensus        17 tg~~g~~----~~~~~~~y~----gt~ivagV~Pg-kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai   87 (300)
T Consensus       105 ~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~lNAtFA~------------~~p~~--G~Iaf~SQSGAl~~a~L  170 (457)
T TIGR02717       105 VGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKLNATFAP------------TMPKK--GGIAFISQSGALLTALL  170 (457)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHCCCC------------CCCCC--CCEEEEEHHHHHHHHHH
T ss_conf             31678999999999997678817767362258144021100135------------78898--87778971258999999


Q ss_pred             HHHHHCCCCEEEEEC-----------------------------CCCCH--HHHHHHHHHHHCCCCEEE--ECCCCEEEC
Q ss_conf             999853995899805-----------------------------88468--889999998401771894--068510135
Q gi|254781050|r   88 IESIEAEIPLIVCIT-----------------------------EGIPV--LDMVRVKARLEKSSSRLI--GPNCPGILT  134 (300)
Q Consensus        88 ~Ea~~agik~iviit-----------------------------eGip~--~d~~~l~~~A~~~g~rii--GPNc~Gii~  134 (300)
T Consensus       171 dwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~DG~~Fl~~A~~~s~~KPiv~lKsG~s~~GakA  250 (457)
T TIGR02717       171 DWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAKEISKKKPIVVLKSGTSEAGAKA  250 (457)
T ss_pred             HHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf             99987278134778267411116577888985398940899971787041689999888630598899936888345676


Q ss_pred             C--------CC--------HHCCEECC---------------CCCC-CCC-EEEEEECCCHHHHHHHHHHHCCCCEEE--
Q ss_conf             5--------51--------00020011---------------2357-786-799980541478999999971995167--
Q gi|254781050|r  135 P--------DS--------CKIGIMPG---------------SIFR-KGS-VGILSRSGTLTYEAVFQTSQEGLGQST--  179 (300)
Q Consensus       135 p--------~~--------~~lgi~p~---------------~~~~-pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~--  179 (300)
T Consensus       251 A~SHTGaLAGs~~~y~aaf~q~G~iRa~~~~ELfd~A~~L~~~~~~~~g~~~~IiTN~GG~Gvia~D~~~~~Gl~L~~~~  330 (457)
T TIGR02717       251 ASSHTGALAGSDEAYDAAFKQAGVIRADSIEELFDLARLLSNQPLPPKGNRVAIITNAGGPGVIATDACEEVGLELAELS  330 (457)
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEECCC
T ss_conf             52102313366899998743014388701778899999983589899887699997896167787656777497455585


Q ss_pred             -------------EEECCC--C-----CCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHH-HHHHHHHHHHHHHCCCCC
Q ss_conf             -------------640556--7-----4467899999999973998728899970-58724-899999999864226755
Q gi|254781050|r  180 -------------AVGIGG--D-----PVKGTEFIDVLELFLADEATESIVMVGE-IGGSA-EEEAAQFLKDEAKRGRKK  237 (300)
Q Consensus       180 -------------~VsiG~--D-----~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~-E~~aa~fi~~~~~~~~~K  237 (300)
T Consensus       331 ~~t~~~L~~~LP~~as~~NPVD~~GsDA~~~-~Y~~~l~~v~eD~nVd~~~vv~~~~a~~~~~~~va~~~~~~~~~~~~k  409 (457)
T TIGR02717       331 EKTKEKLRNILPPEASIKNPVDVLGSDATAE-RYAKALKIVAEDENVDGVVVVLTPTAMTDKPEEVAKGIIEVAKKSNEK  409 (457)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCEEEECCCCHH-HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8999999974761147787512552278989-999999998348888889996425302467999999887543036742


Q ss_pred             ----CEEEEE-EEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf             ----268998-4301576553220011224888899999999998897578898999999999984
Q gi|254781050|r  238 ----PIVGFV-AGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG  298 (300)
Q Consensus       238 ----PVva~~-~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~  298 (300)
T Consensus       410 ~~~Kpvv~~~~gG~~~~~--------a~------------~~L~~~giP~Y~~Pe~AV~Al~~l~~  455 (457)
T TIGR02717       410 KRDKPVVAGFVGGKSVKE--------AK------------RILEENGIPNYTFPERAVKALSALYR  455 (457)
T ss_pred             CCCCCEEEEEECCCCCCH--------HH------------HHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf             124744899846732201--------56------------62231588764796889999998613