HHsearch alignment for GI: 254781050 and conserved domain: TIGR02717
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=97.11 E-value=0.014 Score=36.76 Aligned_cols=247 Identities=21% Similarity=0.244 Sum_probs=154.2
Q ss_pred CCHHHHH----HHHHHHHHC----CCCEEEEECCC-CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 8437799----999998626----98189976589-98868727745775314078503578863688621204567889
Q gi|254781050|r 17 TGKAGTF----HTEQAILYC----QTQVVGGIHPK-KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 17 tg~~g~~----~~~~~~~y~----gt~ivagV~Pg-kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
T Consensus 105 ~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~lNAtFA~------------~~p~~--G~Iaf~SQSGAl~~a~L 170 (457)
T TIGR02717 105 VGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKLNATFAP------------TMPKK--GGIAFISQSGALLTALL 170 (457)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHCCCC------------CCCCC--CCEEEEEHHHHHHHHHH
T ss_conf 31678999999999997678817767362258144021100135------------78898--87778971258999999
Q ss_pred HHHHHCCCCEEEEEC-----------------------------CCCCH--HHHHHHHHHHHCCCCEEE--ECCCCEEEC
Q ss_conf 999853995899805-----------------------------88468--889999998401771894--068510135
Q gi|254781050|r 88 IESIEAEIPLIVCIT-----------------------------EGIPV--LDMVRVKARLEKSSSRLI--GPNCPGILT 134 (300)
Q Consensus 88 ~Ea~~agik~iviit-----------------------------eGip~--~d~~~l~~~A~~~g~rii--GPNc~Gii~ 134 (300)
T Consensus 171 dwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~DG~~Fl~~A~~~s~~KPiv~lKsG~s~~GakA 250 (457)
T TIGR02717 171 DWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAKEISKKKPIVVLKSGTSEAGAKA 250 (457)
T ss_pred HHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 99987278134778267411116577888985398940899971787041689999888630598899936888345676
Q ss_pred C--------CC--------HHCCEECC---------------CCCC-CCC-EEEEEECCCHHHHHHHHHHHCCCCEEE--
Q ss_conf 5--------51--------00020011---------------2357-786-799980541478999999971995167--
Q gi|254781050|r 135 P--------DS--------CKIGIMPG---------------SIFR-KGS-VGILSRSGTLTYEAVFQTSQEGLGQST-- 179 (300)
Q Consensus 135 p--------~~--------~~lgi~p~---------------~~~~-pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~-- 179 (300)
T Consensus 251 A~SHTGaLAGs~~~y~aaf~q~G~iRa~~~~ELfd~A~~L~~~~~~~~g~~~~IiTN~GG~Gvia~D~~~~~Gl~L~~~~ 330 (457)
T TIGR02717 251 ASSHTGALAGSDEAYDAAFKQAGVIRADSIEELFDLARLLSNQPLPPKGNRVAIITNAGGPGVIATDACEEVGLELAELS 330 (457)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 52102313366899998743014388701778899999983589899887699997896167787656777497455585
Q ss_pred -------------EEECCC--C-----CCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHH-HHHHHHHHHHHHHCCCCC
Q ss_conf -------------640556--7-----4467899999999973998728899970-58724-899999999864226755
Q gi|254781050|r 180 -------------AVGIGG--D-----PVKGTEFIDVLELFLADEATESIVMVGE-IGGSA-EEEAAQFLKDEAKRGRKK 237 (300)
Q Consensus 180 -------------~VsiG~--D-----~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~-E~~aa~fi~~~~~~~~~K 237 (300)
T Consensus 331 ~~t~~~L~~~LP~~as~~NPVD~~GsDA~~~-~Y~~~l~~v~eD~nVd~~~vv~~~~a~~~~~~~va~~~~~~~~~~~~k 409 (457)
T TIGR02717 331 EKTKEKLRNILPPEASIKNPVDVLGSDATAE-RYAKALKIVAEDENVDGVVVVLTPTAMTDKPEEVAKGIIEVAKKSNEK 409 (457)
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEECCCCHH-HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999974761147787512552278989-999999998348888889996425302467999999887543036742
Q ss_pred ----CEEEEE-EEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf ----268998-4301576553220011224888899999999998897578898999999999984
Q gi|254781050|r 238 ----PIVGFV-AGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 238 ----PVva~~-~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
T Consensus 410 ~~~Kpvv~~~~gG~~~~~--------a~------------~~L~~~giP~Y~~Pe~AV~Al~~l~~ 455 (457)
T TIGR02717 410 KRDKPVVAGFVGGKSVKE--------AK------------RILEENGIPNYTFPERAVKALSALYR 455 (457)
T ss_pred CCCCCEEEEEECCCCCCH--------HH------------HHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 124744899846732201--------56------------62231588764796889999998613