>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

Probab=93.17  E-value=0.18  Score=29.74  Aligned_cols=54  Identities=22%  Similarity=0.476  Sum_probs=39.5

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHH--HHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf             899999999973998728899970-5872489--9999999864226755268998430157
Q gi|254781050|r  191 TEFIDVLELFLADEATESIVMVGE-IGGSAEE--EAAQFLKDEAKRGRKKPIVGFVAGKTAP  249 (300)
Q Consensus       191 ~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~--~aa~fi~~~~~~~~~KPVva~~~GrtAp  249 (300)
T Consensus        14 ~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~-----~~~~~v~t~~~g~aaS   70 (161)
T cd00394          14 DQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQ-----ASRKPVIAYVGGQAAS   70 (161)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH-----HCCCCEEEECCCCEEE
T ss_conf             99999999998389999789999899988899999999999-----6199999966873776