Query gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs 215 out of 1763
Neff 5.5
Searched_HMMs 39220
Date Mon May 30 03:36:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781050.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05678 succinyl-CoA syntheta 100.0 0 0 758.5 34.3 289 1-298 1-289 (289)
2 PTZ00187 succinyl-CoA syntheta 100.0 0 0 742.1 32.8 291 2-300 17-308 (309)
3 COG0074 SucD Succinyl-CoA synt 100.0 0 0 702.1 30.2 292 1-300 1-292 (293)
4 KOG1255 consensus 100.0 0 0 666.1 25.2 294 2-300 32-326 (329)
5 TIGR02717 AcCoA-syn-alpha acet 100.0 0 0 494.3 22.5 278 1-299 1-292 (457)
6 TIGR01019 sucCoAalpha succinyl 100.0 0 0 459.6 21.4 286 3-297 1-288 (288)
7 COG1042 Acyl-CoA synthetase (N 100.0 9.8E-45 0 305.7 20.5 273 3-296 6-291 (598)
8 KOG1254 consensus 100.0 2.7E-37 6.9E-42 258.4 12.6 289 4-300 5-309 (600)
9 pfam06263 consensus 100.0 1.8E-26 4.5E-31 189.3 19.1 185 56-248 100-289 (514)
10 PRK06091 membrane protein FdrA 99.9 3.5E-26 9E-31 187.4 17.5 186 56-249 102-292 (555)
11 pfam00549 Ligase_CoA CoA-ligas 99.9 2.3E-26 5.9E-31 188.6 10.9 126 156-281 1-128 (128)
12 pfam02629 CoA_binding CoA bind 99.8 2.2E-18 5.5E-23 137.7 9.8 94 6-104 1-96 (96)
13 PRK00048 dihydrodipicolinate r 98.4 1.5E-05 3.7E-10 55.8 12.5 120 9-132 3-130 (265)
14 pfam01408 GFO_IDH_MocA Oxidore 98.4 3E-06 7.7E-11 60.2 8.8 115 10-125 2-117 (120)
15 pfam01113 DapB_N Dihydrodipico 98.3 5.9E-05 1.5E-09 51.9 13.3 115 10-128 2-121 (122)
16 COG1832 Predicted CoA-binding 98.1 8.2E-06 2.1E-10 57.4 6.4 112 9-132 17-131 (140)
17 COG0289 DapB Dihydrodipicolina 98.0 0.00022 5.7E-09 48.2 12.4 120 9-132 3-130 (266)
18 COG2344 AT-rich DNA-binding pr 98.0 1.5E-05 3.9E-10 55.6 6.0 92 5-102 81-178 (211)
19 PRK05472 redox-sensing transcr 98.0 1.8E-05 4.6E-10 55.2 6.2 92 5-102 81-178 (211)
20 COG0673 MviM Predicted dehydro 98.0 9.1E-05 2.3E-09 50.7 9.7 123 7-129 2-127 (342)
21 pfam06263 consensus 97.8 0.0031 7.9E-08 41.0 19.4 230 43-299 223-509 (514)
22 PRK11579 putative oxidoreducta 97.8 0.00052 1.3E-08 45.9 11.0 113 7-124 3-118 (346)
23 TIGR00036 dapB dihydrodipicoli 97.8 0.0011 2.8E-08 43.9 12.1 119 9-128 2-133 (281)
24 PRK00696 sucC succinyl-CoA syn 97.7 0.0014 3.7E-08 43.1 11.5 165 111-297 182-385 (388)
25 PRK10206 putative dehydrogenas 97.6 0.0012 3.2E-08 43.5 10.2 115 10-125 4-120 (345)
26 COG0045 SucC Succinyl-CoA synt 97.6 0.0024 6.2E-08 41.6 11.7 166 111-298 180-385 (387)
27 PRK06091 membrane protein FdrA 97.4 0.011 2.8E-07 37.4 13.2 224 43-297 225-493 (555)
28 COG0059 IlvC Ketol-acid reduct 97.2 0.0037 9.5E-08 40.4 8.7 123 10-141 20-145 (338)
29 TIGR02717 AcCoA-syn-alpha acet 97.1 0.014 3.6E-07 36.8 11.1 247 17-298 105-455 (457)
30 cd07019 S49_SppA_1 Signal pept 96.8 0.0059 1.5E-07 39.2 6.7 80 152-249 1-83 (211)
31 PRK05479 ketol-acid reductoiso 96.8 0.0053 1.4E-07 39.5 6.4 120 8-136 17-139 (336)
32 TIGR00706 SppA_dom signal pept 96.6 0.012 3.1E-07 37.1 7.5 95 186-282 24-132 (224)
33 PRK10949 protease 4; Provision 96.5 0.012 3.1E-07 37.2 6.6 114 149-282 324-452 (618)
34 PRK13403 ketol-acid reductoiso 96.4 0.012 3E-07 37.3 6.1 122 7-137 15-138 (335)
35 cd07022 S49_Sppa_36K_type Sign 96.2 0.017 4.3E-07 36.3 6.0 55 192-249 29-86 (214)
36 pfam07991 IlvN Acetohydroxy ac 96.0 0.016 4.1E-07 36.4 5.1 120 7-135 3-125 (165)
37 pfam03435 Saccharop_dh Sacchar 95.8 0.13 3.4E-06 30.6 9.1 109 11-125 1-119 (384)
38 cd07014 S49_SppA Signal peptid 95.7 0.041 1E-06 33.8 6.4 56 192-249 26-84 (177)
39 TIGR00705 SppA_67K signal pept 95.7 0.025 6.4E-07 35.2 5.1 119 112-248 270-404 (614)
40 cd07023 S49_Sppa_N_C Signal pe 95.3 0.069 1.8E-06 32.4 6.3 55 192-248 21-78 (208)
41 COG0616 SppA Periplasmic serin 94.9 0.16 4.1E-06 30.0 7.2 30 150-184 161-190 (317)
42 COG0136 Asd Aspartate-semialde 94.8 0.36 9.1E-06 27.8 10.5 119 9-133 2-137 (334)
43 PRK08664 aspartate-semialdehyd 94.6 0.41 1E-05 27.4 9.8 148 7-160 2-177 (350)
44 COG1748 LYS9 Saccharopine dehy 94.5 0.42 1.1E-05 27.3 9.5 117 10-133 3-130 (389)
45 TIGR02124 hypE hydrogenase exp 94.3 0.27 6.8E-06 28.6 7.2 102 95-205 94-218 (345)
46 pfam07755 DUF1611 Protein of u 94.1 0.064 1.6E-06 32.5 3.7 149 51-214 15-195 (302)
47 PRK05225 ketol-acid reductoiso 94.0 0.2 5.1E-06 29.4 6.2 127 7-141 36-168 (489)
48 PRK07366 succinyldiaminopimela 94.0 0.55 1.4E-05 26.6 9.0 76 56-133 123-210 (388)
49 pfam05368 NmrA NmrA-like famil 93.6 0.64 1.6E-05 26.2 9.4 85 11-101 1-101 (232)
50 cd05313 NAD_bind_2_Glu_DH NAD( 93.5 0.66 1.7E-05 26.1 9.9 46 7-56 37-82 (254)
51 TIGR01016 sucCoAbeta succinyl- 93.4 0.68 1.7E-05 26.0 10.8 164 111-297 182-388 (389)
52 pfam03447 NAD_binding_3 Homose 93.3 0.72 1.8E-05 25.9 9.0 105 18-125 3-114 (116)
53 cd00394 Clp_protease_like Case 93.2 0.18 4.5E-06 29.7 4.7 54 191-249 14-70 (161)
54 PRK06207 aspartate aminotransf 93.1 0.76 1.9E-05 25.7 9.1 111 5-134 99-225 (406)
55 TIGR00978 asd_EA aspartate-sem 93.0 0.79 2E-05 25.6 9.2 227 10-278 2-272 (358)
56 cd07018 S49_SppA_67K_type Sign 93.0 0.35 8.9E-06 27.9 5.9 51 193-245 34-87 (222)
57 pfam03446 NAD_binding_2 NAD bi 92.9 0.33 8.4E-06 28.0 5.7 111 9-126 2-118 (163)
58 PRK09147 aminotransferase; Pro 92.8 0.86 2.2E-05 25.4 9.2 87 40-131 111-209 (397)
59 pfam00208 ELFV_dehydrog Glutam 92.7 0.48 1.2E-05 27.0 6.3 47 7-57 31-77 (237)
60 KOG2741 consensus 92.6 0.91 2.3E-05 25.2 8.1 119 7-126 2-128 (351)
61 pfam02593 DUF166 Uncharacteriz 92.1 1 2.6E-05 24.9 10.5 106 18-135 6-114 (215)
62 TIGR02538 type_IV_pilB type IV 91.8 0.27 6.8E-06 28.6 4.2 186 60-281 177-445 (577)
63 CHL00194 ycf39 Ycf39; Provisio 91.8 1.1 2.9E-05 24.6 17.9 87 10-102 2-109 (319)
64 PRK08655 prephenate dehydrogen 91.5 1.2 3E-05 24.5 12.7 79 9-92 1-80 (441)
65 PRK06728 aspartate-semialdehyd 91.4 1.2 3.1E-05 24.4 8.7 121 6-133 3-136 (347)
66 PRK00436 argC N-acetyl-gamma-g 91.3 1.2 3.2E-05 24.3 9.7 86 10-96 3-94 (345)
67 PRK12490 6-phosphogluconate de 91.0 1.3 3.4E-05 24.1 7.2 118 10-132 2-123 (298)
68 TIGR02128 G6PI_arch bifunction 91.0 0.75 1.9E-05 25.7 5.8 88 9-125 28-123 (338)
69 PRK13303 L-aspartate dehydroge 90.9 1.4 3.5E-05 24.1 10.4 115 10-128 3-120 (265)
70 PRK13304 L-aspartate dehydroge 90.4 1.5 3.8E-05 23.8 9.6 113 10-128 3-120 (265)
71 PRK11559 garR tartronate semia 90.2 1.2 3.1E-05 24.4 6.3 111 10-127 3-119 (295)
72 TIGR03649 ergot_EASG ergot alk 89.7 1.7 4.4E-05 23.4 9.7 89 11-103 2-105 (285)
73 PRK07680 late competence prote 89.6 1.8 4.5E-05 23.4 6.9 115 10-132 2-122 (273)
74 PRK09082 putative aminotransfe 89.6 1.8 4.5E-05 23.4 8.6 143 5-167 88-259 (386)
75 COG3367 Uncharacterized conser 89.5 0.55 1.4E-05 26.6 4.0 89 35-126 29-127 (339)
76 TIGR03540 DapC_direct LL-diami 89.3 1.8 4.7E-05 23.2 6.8 76 55-132 121-208 (383)
77 PRK06348 aspartate aminotransf 89.3 1.8 4.7E-05 23.2 7.7 75 56-132 120-206 (383)
78 TIGR01761 thiaz-red thiazoliny 89.2 1.1 2.8E-05 24.7 5.4 195 7-211 2-247 (378)
79 PRK07681 aspartate aminotransf 89.1 1.4 3.5E-05 24.0 5.8 124 56-181 124-276 (399)
80 cd05211 NAD_bind_Glu_Leu_Phe_V 89.1 1.9 4.9E-05 23.1 8.2 39 7-48 22-60 (217)
81 KOG1680 consensus 89.0 0.88 2.2E-05 25.3 4.8 54 192-245 68-136 (290)
82 PRK07324 transaminase; Validat 89.0 1.1 2.9E-05 24.6 5.3 76 55-130 110-195 (373)
83 PRK06143 enoyl-CoA hydratase; 89.0 1.6 4.1E-05 23.6 6.1 21 194-214 42-62 (260)
84 PRK13117 consensus 88.5 1.4 3.5E-05 24.0 5.5 38 85-124 113-150 (268)
85 COG1619 LdcA Uncharacterized p 88.1 2.2 5.7E-05 22.7 8.2 46 201-247 200-246 (313)
86 PRK05764 aspartate aminotransf 87.9 1.5 3.7E-05 23.9 5.3 76 55-132 121-208 (389)
87 PRK05617 enoyl-CoA hydratase; 87.8 2 5.1E-05 23.0 6.0 68 91-167 101-169 (356)
88 cd07025 Peptidase_S66 LD-Carbo 87.8 2.3 5.9E-05 22.6 7.6 53 195-248 177-233 (282)
89 COG2084 MmsB 3-hydroxyisobutyr 87.7 2.4 6E-05 22.6 7.4 130 9-143 1-136 (286)
90 PRK06108 aspartate aminotransf 87.6 1.6 4E-05 23.7 5.4 75 55-131 114-201 (382)
91 COG0436 Aspartate/tyrosine/aro 87.5 1.9 4.8E-05 23.2 5.7 72 56-129 120-204 (393)
92 PRK05942 aspartate aminotransf 87.4 2.4 6.2E-05 22.5 9.4 77 55-133 127-215 (394)
93 PRK09276 aspartate aminotransf 87.4 2.5 6.3E-05 22.5 8.9 110 55-166 123-261 (385)
94 cd07062 Peptidase_S66_mccF_lik 87.3 2.5 6.3E-05 22.4 8.4 83 195-286 200-289 (308)
95 PRK07550 hypothetical protein; 87.2 1.2 2.9E-05 24.5 4.5 74 56-131 122-207 (387)
96 PRK08362 consensus 86.1 2.3 5.9E-05 22.6 5.5 76 55-132 117-204 (389)
97 PRK08068 transaminase; Reviewe 86.1 2.9 7.4E-05 22.0 8.9 76 56-133 125-212 (389)
98 PRK13608 diacylglycerol glucos 86.0 2.9 7.4E-05 22.0 8.9 206 63-299 97-338 (391)
99 TIGR02533 type_II_gspE general 85.4 1.6 4E-05 23.7 4.4 128 70-229 194-335 (495)
100 PRK12414 putative aminotransfe 85.4 3.1 7.9E-05 21.8 9.1 109 5-133 87-207 (384)
101 pfam01118 Semialdhyde_dh Semia 85.2 3.2 8.1E-05 21.7 7.3 93 10-105 1-100 (121)
102 KOG1203 consensus 85.1 3.2 8.1E-05 21.7 7.1 38 7-45 78-115 (411)
103 COG1086 Predicted nucleoside-d 85.1 3.2 8.2E-05 21.7 14.7 89 6-99 114-209 (588)
104 PRK07683 aminotransferase A; V 85.0 2.6 6.6E-05 22.3 5.3 77 55-133 119-206 (387)
105 PRK08252 enoyl-CoA hydratase; 84.6 2 5.2E-05 23.0 4.7 26 117-144 110-135 (254)
106 PTZ00079 NADP-specific glutama 84.5 2.7 6.8E-05 22.2 5.2 46 150-196 251-299 (469)
107 PRK09599 6-phosphogluconate de 84.3 3.5 8.8E-05 21.5 7.1 118 10-132 2-123 (301)
108 PRK09414 glutamate dehydrogena 84.2 3.5 8.9E-05 21.5 10.0 43 150-196 228-276 (446)
109 PRK06023 enoyl-CoA hydratase; 84.2 3.5 9E-05 21.5 6.5 13 117-129 113-125 (248)
110 PRK07212 consensus 83.8 2.4 6.2E-05 22.5 4.8 73 56-130 122-204 (378)
111 pfam02016 Peptidase_S66 LD-car 83.8 3.6 9.3E-05 21.4 8.1 76 202-286 184-261 (281)
112 PRK08912 hypothetical protein; 83.7 3.1 7.8E-05 21.8 5.3 111 56-168 118-256 (387)
113 PRK07367 consensus 83.3 3.8 9.7E-05 21.2 7.9 76 56-133 119-206 (385)
114 PRK13301 putative L-aspartate 83.2 3.8 9.8E-05 21.2 10.6 114 9-128 3-121 (267)
115 pfam04273 DUF442 Putative phos 83.2 3.9 9.8E-05 21.2 5.9 94 76-173 9-108 (110)
116 TIGR03189 dienoyl_CoA_hyt cycl 82.9 3.5 8.8E-05 21.5 5.3 17 1-17 1-17 (251)
117 PRK08069 consensus 82.9 3.3 8.5E-05 21.6 5.2 76 56-133 121-208 (390)
118 TIGR01116 ATPase-IIA1_Ca calci 82.2 1.2 2.9E-05 24.5 2.6 137 79-241 467-639 (800)
119 pfam01210 NAD_Gly3P_dh_N NAD-d 82.2 3 7.7E-05 21.9 4.8 117 10-134 2-132 (159)
120 PRK08361 aspartate aminotransf 81.8 3.2 8.3E-05 21.7 4.8 75 55-131 122-208 (390)
121 pfam02646 RmuC RmuC family. Th 81.4 1.4 3.6E-05 24.0 2.8 109 17-137 67-181 (301)
122 PRK05957 aspartate aminotransf 81.2 4.6 0.00012 20.7 5.5 108 55-164 119-253 (389)
123 PRK05809 3-hydroxybutyryl-CoA 80.9 4.7 0.00012 20.7 6.0 20 195-214 38-57 (260)
124 TIGR02546 III_secr_ATP type II 80.9 4.7 0.00012 20.7 7.2 124 154-296 131-262 (430)
125 PRK06144 enoyl-CoA hydratase; 80.8 4.7 0.00012 20.7 6.0 18 196-213 43-60 (262)
126 PRK13116 consensus 80.5 4.8 0.00012 20.6 8.2 41 83-125 111-151 (278)
127 PRK08443 consensus 80.3 4.8 0.00012 20.6 5.2 74 56-131 120-205 (388)
128 PRK06127 enoyl-CoA hydratase; 80.3 4.9 0.00012 20.5 6.1 22 193-214 43-64 (269)
129 PRK08290 enoyl-CoA hydratase; 80.0 3.3 8.4E-05 21.6 4.3 21 194-214 37-57 (284)
130 PRK05995 enoyl-CoA hydratase; 80.0 5 0.00013 20.5 5.9 26 117-144 118-143 (261)
131 PRK12439 NAD(P)H-dependent gly 79.8 5.1 0.00013 20.4 8.9 97 6-107 4-115 (340)
132 PRK08259 enoyl-CoA hydratase; 79.7 4.2 0.00011 20.9 4.8 19 1-19 3-21 (254)
133 cd06371 PBP1_sensory_GC_DEF_li 79.7 5.1 0.00013 20.4 12.6 89 149-243 131-226 (382)
134 pfam02634 FdhD-NarQ FdhD/NarQ 79.6 4.2 0.00011 21.0 4.8 25 158-184 175-199 (235)
135 TIGR03537 DapC succinyldiamino 79.1 5.3 0.00014 20.3 9.7 109 56-166 94-228 (350)
136 PRK07658 enoyl-CoA hydratase; 78.9 5.4 0.00014 20.3 6.2 10 120-129 116-125 (257)
137 PRK05794 consensus 78.8 5.4 0.00014 20.2 7.6 74 56-131 121-206 (397)
138 PRK07468 enoyl-CoA hydratase; 78.3 5.6 0.00014 20.1 5.1 11 119-129 121-131 (262)
139 COG2204 AtoC Response regulato 78.1 5.7 0.00015 20.1 8.4 198 87-297 40-255 (464)
140 pfam07085 DRTGG DRTGG domain. 78.0 3.8 9.8E-05 21.2 4.2 50 71-125 40-89 (105)
141 PRK06375 consensus 78.0 5.8 0.00015 20.1 8.2 75 55-131 118-202 (381)
142 PRK06290 aspartate aminotransf 77.7 5.9 0.00015 20.0 8.7 109 5-132 103-223 (411)
143 TIGR01211 ELP3 histone acetylt 77.6 5.9 0.00015 20.0 5.6 93 2-118 225-327 (573)
144 PRK10425 DNase TatD; Provision 77.6 5.9 0.00015 20.0 10.7 36 84-121 18-53 (258)
145 cd01075 NAD_bind_Leu_Phe_Val_D 77.1 4.8 0.00012 20.6 4.4 34 7-42 27-61 (200)
146 COG4693 PchG Oxidoreductase (N 77.1 2 5.1E-05 23.0 2.5 154 10-173 6-169 (361)
147 PRK06507 consensus 76.5 6.3 0.00016 19.8 7.7 75 55-131 121-208 (400)
148 cd06452 SepCysS Sep-tRNA:Cys-t 76.4 6.4 0.00016 19.8 8.2 109 4-133 56-183 (361)
149 PRK05671 aspartate-semialdehyd 76.3 6.4 0.00016 19.8 10.1 122 7-133 3-135 (336)
150 cd00609 AAT_like Aspartate ami 76.0 5.8 0.00015 20.1 4.6 74 56-131 90-175 (350)
151 pfam10727 Rossmann-like Rossma 75.8 6.6 0.00017 19.7 6.1 100 18-125 6-107 (111)
152 cd01076 NAD_bind_1_Glu_DH NAD( 75.6 5.6 0.00014 20.2 4.4 46 7-56 30-75 (227)
153 PRK02006 murD UDP-N-acetylmura 75.3 6.8 0.00017 19.6 6.4 27 268-294 427-455 (501)
154 TIGR01859 fruc_bis_ald_ fructo 75.2 6.8 0.00017 19.6 4.9 167 82-282 92-273 (339)
155 cd07016 S14_ClpP_1 Caseinolyti 75.2 3.7 9.5E-05 21.3 3.5 56 190-248 14-70 (160)
156 COG1024 CaiD Enoyl-CoA hydrata 75.0 6.9 0.00018 19.6 5.8 19 196-214 40-58 (257)
157 PRK00724 formate dehydrogenase 74.9 7 0.00018 19.6 5.2 10 238-247 199-208 (262)
158 PRK11880 pyrroline-5-carboxyla 74.4 7.2 0.00018 19.5 6.2 102 9-114 3-106 (267)
159 PRK06598 aspartate-semialdehyd 74.4 7.2 0.00018 19.5 8.6 117 9-130 3-131 (348)
160 PRK07396 naphthoate synthase; 74.3 7.2 0.00018 19.5 5.8 12 118-129 127-138 (273)
161 COG3268 Uncharacterized conser 74.2 7.2 0.00018 19.4 6.0 125 8-137 6-140 (382)
162 pfam03807 F420_oxidored NADP o 73.8 7.4 0.00019 19.4 6.2 91 10-104 1-93 (93)
163 PRK07682 hypothetical protein; 73.6 7.5 0.00019 19.4 5.3 109 56-166 112-248 (378)
164 COG1221 PspF Transcriptional r 72.8 6.9 0.00018 19.6 4.3 20 111-130 119-139 (403)
165 PRK06056 consensus 72.4 8 0.0002 19.2 8.3 76 56-133 126-213 (402)
166 TIGR03538 DapC_gpp succinyldia 72.0 8.1 0.00021 19.1 9.6 75 57-133 125-211 (394)
167 PRK06563 enoyl-CoA hydratase; 71.9 8.2 0.00021 19.1 4.6 11 119-129 113-123 (255)
168 PRK08363 alanine aminotransfer 71.8 8.2 0.00021 19.1 7.5 76 56-133 124-211 (398)
169 TIGR02853 spore_dpaA dipicolin 71.7 8.3 0.00021 19.1 7.6 20 116-135 251-271 (288)
170 PRK05869 enoyl-CoA hydratase; 71.7 8.3 0.00021 19.1 5.9 53 193-247 39-110 (225)
171 PRK07778 consensus 71.7 8.3 0.00021 19.1 5.3 76 56-133 121-207 (386)
172 cd01310 TatD_DNAse TatD like p 71.5 8.4 0.00021 19.0 10.3 36 83-120 17-52 (251)
173 PRK09674 enoyl-CoA hydratase-i 71.1 6.3 0.00016 19.9 3.8 16 3-18 6-21 (257)
174 cd05017 SIS_PGI_PMI_1 The memb 71.1 8.3 0.00021 19.1 4.4 49 70-125 42-94 (119)
175 smart00481 POLIIIAc DNA polyme 71.1 8.5 0.00022 19.0 4.6 43 82-125 16-58 (67)
176 PRK05864 enoyl-CoA hydratase; 70.9 8.6 0.00022 19.0 6.0 13 117-129 121-133 (269)
177 PRK08005 ribulose-phosphate 3- 70.6 7.3 0.00019 19.4 4.1 48 71-123 61-108 (210)
178 PRK08321 naphthoate synthase; 70.4 4.4 0.00011 20.8 2.9 12 93-104 68-79 (302)
179 COG0002 ArgC Acetylglutamate s 70.3 8.9 0.00023 18.9 6.7 96 9-105 3-104 (349)
180 cd06353 PBP1_BmpA_Med_like Per 70.2 8.9 0.00023 18.9 6.3 113 37-157 2-127 (258)
181 pfam09863 DUF2090 Uncharacteri 70.2 7 0.00018 19.6 3.9 79 158-247 189-272 (310)
182 KOG1684 consensus 69.9 9.1 0.00023 18.8 5.6 11 267-277 277-287 (401)
183 pfam06230 DUF1009 Protein of u 69.7 7.1 0.00018 19.5 3.9 70 111-192 55-134 (212)
184 COG0036 Rpe Pentose-5-phosphat 69.5 6 0.00015 20.0 3.4 62 56-123 50-111 (220)
185 PRK08883 ribulose-phosphate 3- 69.5 8.5 0.00022 19.0 4.2 49 71-124 61-109 (220)
186 PRK09701 D-allose transporter 69.1 9.4 0.00024 18.7 13.5 72 55-128 35-114 (311)
187 PRK06951 consensus 68.7 9.6 0.00025 18.7 5.3 123 1-144 1-134 (254)
188 PRK09265 aminotransferase AlaT 68.4 9.7 0.00025 18.6 5.2 75 56-132 126-212 (404)
189 PRK08306 dipicolinate synthase 68.3 9.8 0.00025 18.6 5.7 102 8-125 2-118 (296)
190 TIGR03451 mycoS_dep_FDH mycoth 68.2 9.8 0.00025 18.6 13.8 12 285-296 335-346 (358)
191 TIGR01099 galU UTP-glucose-1-p 68.1 9.9 0.00025 18.6 4.7 21 82-102 34-54 (270)
192 COG3804 Uncharacterized conser 68.1 9.9 0.00025 18.6 8.4 116 10-128 4-131 (350)
193 TIGR01505 tartro_sem_red 2-hyd 67.7 3.1 8E-05 21.8 1.7 72 58-131 45-122 (291)
194 PRK08960 hypothetical protein; 67.7 10 0.00026 18.5 5.7 110 56-167 123-257 (387)
195 COG0151 PurD Phosphoribosylami 67.3 10 0.00026 18.5 7.7 86 10-97 2-90 (428)
196 TIGR03025 EPS_sugtrans exopoly 67.2 10 0.00026 18.5 8.9 89 8-100 125-221 (445)
197 PRK08040 putative semialdehyde 66.8 10 0.00027 18.4 10.7 121 6-133 2-136 (337)
198 PRK12478 enoyl-CoA hydratase; 66.7 11 0.00027 18.4 5.2 10 120-129 134-143 (298)
199 pfam01041 DegT_DnrJ_EryC1 DegT 66.6 11 0.00027 18.4 8.5 111 18-134 24-153 (363)
200 PRK06072 enoyl-CoA hydratase; 66.4 11 0.00027 18.4 5.5 50 90-144 76-125 (240)
201 PRK03580 carnitinyl-CoA dehydr 66.2 11 0.00027 18.4 5.8 11 119-129 116-126 (262)
202 PRK09076 enoyl-CoA hydratase; 66.0 11 0.00028 18.3 5.8 26 117-144 114-139 (258)
203 cd06310 PBP1_ABC_sugar_binding 65.8 11 0.00028 18.3 11.8 67 58-126 17-87 (273)
204 PRK07799 enoyl-CoA hydratase; 65.7 11 0.00028 18.3 5.5 15 3-17 7-21 (263)
205 PRK09722 allulose-6-phosphate 65.2 8.7 0.00022 18.9 3.5 50 71-124 60-109 (227)
206 cd02071 MM_CoA_mut_B12_BD meth 65.1 11 0.00029 18.2 8.0 71 56-130 33-112 (122)
207 PRK08175 aminotransferase; Val 64.9 11 0.00029 18.2 7.7 74 56-131 122-207 (395)
208 cd07037 TPP_PYR_MenD Pyrimidin 64.8 11 0.00029 18.2 7.0 64 166-243 3-66 (162)
209 TIGR02637 RhaS rhamnose ABC tr 64.6 12 0.00029 18.2 7.4 171 56-252 46-225 (307)
210 COG1184 GCD2 Translation initi 63.9 12 0.0003 18.1 7.2 101 72-178 119-225 (301)
211 cd06316 PBP1_ABC_sugar_binding 63.8 12 0.0003 18.1 14.1 153 85-245 47-221 (294)
212 TIGR01394 TypA_BipA GTP-bindin 63.6 11 0.00028 18.3 3.8 171 1-191 317-532 (609)
213 pfam00155 Aminotran_1_2 Aminot 63.2 12 0.00031 18.0 9.3 76 56-133 94-181 (351)
214 pfam02780 Transketolase_C Tran 63.2 12 0.00031 18.0 9.5 48 158-205 72-122 (124)
215 PRK08745 ribulose-phosphate 3- 63.1 12 0.00031 18.0 4.1 48 71-123 65-112 (223)
216 TIGR03023 WcaJ_sugtrans Undeca 63.1 12 0.00031 18.0 9.0 88 8-99 128-223 (451)
217 cd01746 GATase1_CTP_Synthase T 62.8 8.9 0.00023 18.9 3.2 77 56-134 13-96 (235)
218 PRK07629 consensus 62.7 12 0.00032 17.9 6.5 26 117-144 118-143 (261)
219 COG1712 Predicted dinucleotide 62.5 13 0.00032 17.9 6.9 110 11-128 3-119 (255)
220 COG4231 Indolepyruvate ferredo 62.4 13 0.00032 17.9 4.8 69 58-128 258-330 (640)
221 COG0399 WecE Predicted pyridox 62.1 13 0.00033 17.9 8.3 165 18-184 33-227 (374)
222 TIGR01244 TIGR01244 conserved 62.1 13 0.00033 17.9 5.3 106 76-184 9-122 (136)
223 PTZ00170 D-ribulose-5-phosphat 62.0 11 0.00028 18.3 3.6 60 165-231 102-165 (224)
224 PRK05674 gamma-carboxygeranoyl 62.0 13 0.00033 17.9 5.8 37 90-129 96-132 (271)
225 PRK13478 phosphonoacetaldehyde 61.9 13 0.00033 17.8 12.6 26 273-298 233-259 (267)
226 PRK04690 murD UDP-N-acetylmura 61.6 13 0.00033 17.8 9.7 23 8-31 8-30 (468)
227 TIGR01740 pyrF orotidine 5'-ph 61.3 13 0.00034 17.8 5.5 83 49-134 61-166 (233)
228 smart00812 Alpha_L_fucos Alpha 61.3 9.4 0.00024 18.7 3.1 54 71-124 70-144 (384)
229 PRK08138 enoyl-CoA hydratase; 61.1 13 0.00034 17.8 6.6 10 120-129 119-128 (260)
230 PRK06190 enoyl-CoA hydratase; 60.8 13 0.00034 17.7 5.4 42 98-144 97-138 (258)
231 PRK07777 aminotransferase; Val 60.6 14 0.00035 17.7 9.4 109 56-166 116-254 (386)
232 PRK08260 enoyl-CoA hydratase; 60.2 14 0.00035 17.7 5.0 13 117-129 129-141 (293)
233 PRK07657 enoyl-CoA hydratase; 60.0 14 0.00035 17.6 6.1 26 117-144 117-142 (261)
234 PRK07337 aminotransferase; Val 59.6 14 0.00036 17.6 4.8 74 56-131 121-206 (388)
235 cd01454 vWA_norD_type norD typ 59.2 14 0.00037 17.6 4.0 32 94-125 103-146 (174)
236 TIGR03201 dearomat_had 6-hydro 59.1 14 0.00037 17.5 11.7 34 148-184 164-197 (349)
237 TIGR01106 ATPase-IIC_X-K Na,H/ 58.8 14 0.00035 17.7 3.6 53 72-129 562-614 (998)
238 PRK00094 gpsA NAD(P)H-dependen 58.6 15 0.00038 17.5 4.9 49 56-106 59-109 (325)
239 PRK07309 aromatic amino acid a 58.5 15 0.00038 17.5 9.1 77 55-133 121-211 (390)
240 PRK05581 ribulose-phosphate 3- 58.3 15 0.00038 17.5 4.1 48 71-123 64-111 (220)
241 PRK07310 consensus 58.1 15 0.00038 17.4 7.9 76 56-133 122-209 (395)
242 PRK08272 enoyl-CoA hydratase; 58.1 15 0.00038 17.4 5.7 10 120-129 154-163 (308)
243 cd01491 Ube1_repeat1 Ubiquitin 57.6 15 0.00039 17.4 8.4 119 7-134 18-143 (286)
244 PRK11730 fadB multifunctional 57.2 16 0.0004 17.3 5.9 13 117-129 121-133 (715)
245 PRK13355 bifunctional HTH-doma 56.7 16 0.0004 17.3 4.8 47 84-130 271-323 (518)
246 pfam02844 GARS_N Phosphoribosy 56.2 16 0.00041 17.2 6.1 93 10-130 1-94 (99)
247 PRK05022 anaerobic nitric oxid 55.7 8.9 0.00023 18.9 2.2 103 188-297 188-300 (510)
248 cd06558 crotonase-like Crotona 55.6 16 0.00042 17.2 6.6 59 193-251 31-108 (195)
249 cd06320 PBP1_allose_binding Pe 55.5 17 0.00042 17.2 13.3 71 56-128 11-89 (275)
250 cd00615 Orn_deC_like Ornithine 55.5 17 0.00042 17.2 6.2 176 26-241 4-188 (294)
251 PRK06107 aspartate aminotransf 55.5 17 0.00042 17.2 8.1 73 56-130 124-209 (402)
252 PRK07659 enoyl-CoA hydratase; 55.3 17 0.00043 17.1 6.0 17 85-101 40-56 (260)
253 cd06302 PBP1_LsrB_Quorum_Sensi 54.8 17 0.00043 17.1 13.9 71 56-129 11-89 (298)
254 PRK05862 enoyl-CoA hydratase; 54.7 17 0.00043 17.1 6.3 10 120-129 116-125 (257)
255 cd06375 PBP1_mGluR_groupII Lig 54.5 17 0.00044 17.1 10.4 88 149-245 173-264 (458)
256 TIGR03450 mycothiol_INO1 inosi 54.0 17 0.00045 17.0 4.8 63 64-128 117-182 (351)
257 PRK08195 4-hydroxy-2-ketovaler 53.9 18 0.00045 17.0 6.1 56 70-126 77-133 (337)
258 PRK02615 thiamine-phosphate py 53.7 18 0.00045 17.0 11.9 59 70-128 144-206 (345)
259 PRK03806 murD UDP-N-acetylmura 53.6 17 0.00042 17.2 3.3 21 10-31 8-28 (438)
260 TIGR02666 moaA molybdenum cofa 53.6 18 0.00045 17.0 5.3 40 82-121 145-187 (346)
261 TIGR02108 PQQ_syn_pqqB coenzym 53.5 5.9 0.00015 20.0 1.0 80 195-285 190-308 (314)
262 PRK00507 deoxyribose-phosphate 53.4 15 0.00038 17.5 3.1 43 60-107 26-68 (221)
263 PRK06855 aminotransferase; Val 53.3 18 0.00046 16.9 8.4 50 84-133 159-216 (433)
264 PRK07502 cyclohexadienyl dehyd 53.2 18 0.00046 16.9 7.9 138 10-159 8-152 (307)
265 PRK08674 bifunctional phosphog 52.9 18 0.00046 16.9 5.4 50 69-125 76-129 (328)
266 PRK05870 enoyl-CoA hydratase; 52.6 18 0.00047 16.9 6.0 27 116-144 113-139 (254)
267 PRK10083 putative dehydrogenas 52.5 18 0.00047 16.9 12.7 12 285-296 312-323 (339)
268 KOG3009 consensus 52.5 18 0.00047 16.9 3.6 112 159-283 376-497 (614)
269 COG3958 Transketolase, C-termi 52.0 19 0.00048 16.8 9.7 140 120-295 161-310 (312)
270 COG2185 Sbm Methylmalonyl-CoA 51.5 19 0.00049 16.8 7.4 34 88-121 57-91 (143)
271 PRK04663 murD UDP-N-acetylmura 51.2 14 0.00037 17.6 2.7 21 10-31 9-29 (438)
272 TIGR02408 ectoine_ThpD ectoine 51.0 7 0.00018 19.6 1.1 36 112-159 94-129 (278)
273 TIGR03210 badI 2-ketocyclohexa 50.8 20 0.0005 16.7 5.7 15 3-17 4-18 (256)
274 PRK13894 conjugal transfer ATP 50.6 20 0.0005 16.7 7.4 44 254-297 243-286 (320)
275 PRK13302 putative L-aspartate 50.5 20 0.00051 16.7 10.2 116 6-127 4-122 (271)
276 PRK07568 aspartate aminotransf 50.4 20 0.00051 16.7 8.5 76 56-133 119-207 (396)
277 TIGR00959 ffh signal recogniti 50.2 20 0.00051 16.6 4.7 101 8-118 102-217 (439)
278 COG0334 GdhA Glutamate dehydro 49.7 20 0.00052 16.6 4.3 47 150-197 206-255 (411)
279 cd03315 MLE_like Muconate lact 49.7 20 0.00052 16.6 4.0 67 53-119 59-125 (265)
280 TIGR01921 DAP-DH diaminopimela 49.5 17 0.00043 17.1 2.9 233 9-263 4-256 (326)
281 PRK11449 putative deoxyribonuc 49.3 21 0.00053 16.5 10.7 37 83-121 21-57 (258)
282 COG0504 PyrG CTP synthase (UTP 49.0 21 0.00053 16.5 3.7 14 163-176 243-256 (533)
283 PRK07543 consensus 48.9 21 0.00054 16.5 8.2 70 56-127 122-204 (400)
284 pfam01026 TatD_DNase TatD rela 48.8 21 0.00054 16.5 10.1 38 83-122 16-53 (255)
285 pfam02745 MCR_alpha_N Methyl-c 48.6 21 0.00054 16.5 3.2 21 82-102 87-107 (267)
286 PRK07634 pyrroline-5-carboxyla 48.5 21 0.00054 16.5 8.2 102 7-112 3-109 (245)
287 KOG0202 consensus 48.2 22 0.00055 16.4 4.0 14 199-212 623-636 (972)
288 PRK09880 L-idonate 5-dehydroge 48.1 22 0.00055 16.4 10.0 10 285-294 319-328 (343)
289 TIGR02915 PEP_resp_reg putativ 48.1 22 0.00055 16.4 3.8 101 192-297 150-256 (451)
290 PRK12480 D-lactate dehydrogena 48.0 22 0.00055 16.4 9.0 201 9-246 2-235 (330)
291 COG0474 MgtA Cation transport 48.0 22 0.00055 16.4 3.5 38 79-121 548-585 (917)
292 pfam10566 Glyco_hydro_97 Glyco 47.9 22 0.00055 16.4 3.5 12 111-122 354-365 (643)
293 PRK06688 enoyl-CoA hydratase; 47.7 22 0.00056 16.4 6.7 11 119-129 121-131 (263)
294 pfam05889 SLA_LP_auto_ag Solub 47.3 22 0.00057 16.3 3.3 81 76-159 137-220 (389)
295 TIGR00064 ftsY signal recognit 47.2 22 0.00057 16.3 4.8 68 52-131 134-215 (284)
296 TIGR03466 HpnA hopanoid-associ 47.2 22 0.00057 16.3 8.4 87 10-102 2-112 (328)
297 TIGR01915 npdG NADPH-dependent 47.2 20 0.0005 16.7 2.9 163 10-229 2-187 (233)
298 cd06362 PBP1_mGluR Ligand bind 47.1 22 0.00057 16.3 10.0 87 151-244 173-263 (452)
299 PRK07827 enoyl-CoA hydratase; 47.0 22 0.00057 16.3 5.8 26 117-144 115-140 (255)
300 COG1167 ARO8 Transcriptional r 47.0 22 0.00057 16.3 6.1 124 55-178 185-332 (459)
301 COG0345 ProC Pyrroline-5-carbo 46.9 23 0.00057 16.3 6.5 119 9-134 2-124 (266)
302 PRK06225 aspartate aminotransf 46.9 23 0.00057 16.3 9.2 77 56-134 109-198 (375)
303 cd00331 IGPS Indole-3-glycerol 46.8 23 0.00058 16.3 4.9 25 150-174 170-194 (217)
304 COG0800 Eda 2-keto-3-deoxy-6-p 46.8 23 0.00058 16.3 7.5 44 84-137 75-118 (211)
305 PRK07510 consensus 46.4 23 0.00059 16.3 6.1 10 120-129 125-134 (266)
306 TIGR02452 TIGR02452 conserved 46.3 13 0.00033 17.8 1.9 70 55-133 151-227 (275)
307 COG1168 MalY Bifunctional PLP- 46.2 23 0.00059 16.2 5.8 72 53-126 111-196 (388)
308 PRK00278 trpC indole-3-glycero 45.9 23 0.00059 16.2 5.2 14 90-103 79-92 (261)
309 KOG3022 consensus 45.9 23 0.0006 16.2 3.3 150 91-247 42-221 (300)
310 PRK09140 2-dehydro-3-deoxy-6-p 45.8 23 0.0006 16.2 8.3 102 11-137 14-116 (206)
311 PRK07854 enoyl-CoA hydratase; 45.7 23 0.0006 16.2 5.7 10 151-160 124-133 (243)
312 COG2873 MET17 O-acetylhomoseri 45.6 24 0.0006 16.2 7.7 100 18-132 86-188 (426)
313 PRK06836 aspartate aminotransf 45.6 24 0.0006 16.2 7.5 75 56-132 128-219 (396)
314 PRK00141 murD UDP-N-acetylmura 45.4 24 0.00061 16.2 8.1 27 10-38 19-45 (476)
315 pfam02811 PHP PHP domain. The 45.4 24 0.00061 16.2 5.1 44 82-126 17-62 (173)
316 PRK05380 pyrG CTP synthetase; 44.9 24 0.00062 16.1 3.1 33 58-92 94-127 (534)
317 PRK11377 dihydroxyacetone kina 44.6 24 0.00062 16.1 7.4 43 59-101 49-95 (472)
318 cd00429 RPE Ribulose-5-phospha 44.4 25 0.00063 16.1 3.7 48 71-123 60-107 (211)
319 PRK00885 phosphoribosylamine-- 43.8 25 0.00064 16.0 6.5 86 10-97 2-89 (424)
320 PRK11253 ldcA L,D-carboxypepti 43.6 25 0.00065 16.0 7.9 78 202-286 189-267 (305)
321 cd06324 PBP1_ABC_sugar_binding 43.5 25 0.00065 16.0 16.5 81 37-129 2-90 (305)
322 COG2086 FixA Electron transfer 43.5 25 0.00065 16.0 7.8 220 40-299 19-255 (260)
323 PRK09331 Sep-tRNA:Cys-tRNA syn 43.3 26 0.00065 16.0 5.1 48 78-125 138-191 (386)
324 PRK09148 aminotransferase; Val 43.1 26 0.00066 15.9 7.5 74 56-131 124-209 (406)
325 COG0287 TyrA Prephenate dehydr 42.7 26 0.00067 15.9 9.2 143 8-168 3-153 (279)
326 cd03328 MR_like_3 Mandelate ra 42.5 26 0.00067 15.9 3.7 67 50-116 107-175 (352)
327 KOG1681 consensus 42.5 22 0.00057 16.3 2.6 14 149-162 162-175 (292)
328 TIGR01288 nodI nodulation ABC 42.2 15 0.00038 17.4 1.6 68 117-184 28-110 (303)
329 TIGR00709 dat 2,4-diaminobutyr 42.1 27 0.00068 15.8 3.9 20 225-244 228-247 (445)
330 cd06564 GH20_DspB_LnbB-like Gl 42.1 27 0.00068 15.8 5.1 81 105-190 79-170 (326)
331 COG0141 HisD Histidinol dehydr 41.9 27 0.00068 15.8 4.6 32 71-102 117-154 (425)
332 PRK02261 methylaspartate mutas 41.6 27 0.00069 15.8 4.5 30 269-298 102-135 (137)
333 PRK07110 polyketide biosynthes 41.6 27 0.00069 15.8 6.3 11 119-129 123-133 (257)
334 KOG1350 consensus 41.4 27 0.0007 15.8 3.4 93 149-245 190-299 (521)
335 PRK06186 hypothetical protein; 41.3 27 0.0007 15.8 3.9 73 57-134 15-94 (229)
336 TIGR02087 LEUD_arch 3-isopropy 41.3 11 0.00029 18.2 0.9 76 199-290 5-88 (159)
337 COG0138 PurH AICAR transformyl 41.3 27 0.0007 15.8 3.4 16 270-285 493-508 (515)
338 PRK06476 pyrroline-5-carboxyla 41.1 28 0.00071 15.7 6.1 116 10-133 2-122 (255)
339 TIGR01007 eps_fam capsular exo 41.0 28 0.00071 15.7 6.0 72 57-134 118-190 (207)
340 KOG0203 consensus 40.6 20 0.00052 16.6 2.1 33 72-104 584-616 (1019)
341 PRK10812 putative metallodepen 40.5 28 0.00072 15.7 11.4 37 83-121 22-58 (265)
342 PRK08636 aspartate aminotransf 40.5 28 0.00072 15.7 9.8 75 56-132 126-219 (403)
343 PRK05283 deoxyribose-phosphate 40.4 28 0.00072 15.7 4.7 163 58-232 29-220 (258)
344 pfam00378 ECH Enoyl-CoA hydrat 40.3 28 0.00072 15.7 6.5 57 193-251 22-97 (169)
345 PTZ00186 heat shock 70 kDa pre 40.1 29 0.00073 15.6 3.5 49 58-106 144-199 (657)
346 cd02691 PurM-like2 AIR synthas 39.7 29 0.00074 15.6 3.0 63 95-157 89-169 (346)
347 PRK07315 fructose-bisphosphate 39.6 29 0.00074 15.6 11.4 125 84-228 89-223 (293)
348 PRK03369 murD UDP-N-acetylmura 39.6 29 0.00074 15.6 3.1 11 287-297 472-482 (487)
349 TIGR00465 ilvC ketol-acid redu 39.4 29 0.00075 15.6 4.0 141 9-158 4-154 (344)
350 cd06307 PBP1_uncharacterized_s 39.3 29 0.00075 15.6 13.0 118 149-297 124-252 (275)
351 TIGR01856 hisJ_fam histidinol 39.1 24 0.0006 16.2 2.3 23 83-106 19-41 (301)
352 COG0240 GpsA Glycerol-3-phosph 39.0 30 0.00076 15.5 4.0 71 56-129 59-137 (329)
353 PTZ00142 6-phosphogluconate de 39.0 30 0.00076 15.5 10.1 126 6-133 3-135 (474)
354 pfam01120 Alpha_L_fucos Alpha- 38.9 30 0.00076 15.5 3.1 54 71-124 81-155 (344)
355 pfam02603 Hpr_kinase_N HPr Ser 38.6 30 0.00077 15.5 3.9 20 272-291 98-117 (127)
356 PRK05447 1-deoxy-D-xylulose 5- 38.5 30 0.00077 15.5 10.5 115 9-125 2-142 (379)
357 cd00755 YgdL_like Family of ac 38.2 31 0.00078 15.5 7.9 118 7-132 10-136 (231)
358 pfam03709 OKR_DC_1_N Orn/Lys/A 38.1 31 0.00078 15.4 8.0 72 160-247 3-74 (111)
359 cd06569 GH20_Sm-chitobiase-lik 38.0 28 0.00071 15.7 2.5 21 105-125 94-114 (445)
360 COG0223 Fmt Methionyl-tRNA for 37.4 32 0.0008 15.4 6.7 82 9-104 2-89 (307)
361 pfam00218 IGPS Indole-3-glycer 37.3 32 0.00081 15.4 7.0 14 90-103 77-90 (254)
362 KOG3505 consensus 37.0 27 0.00068 15.8 2.3 42 166-214 10-51 (55)
363 PRK06545 prephenate dehydrogen 37.0 32 0.00082 15.3 9.5 109 10-126 2-115 (357)
364 PRK13790 phosphoribosylamine-- 36.9 32 0.00082 15.3 6.3 85 10-96 2-89 (415)
365 PRK00943 selenophosphate synth 36.8 32 0.00082 15.3 6.3 74 83-159 85-179 (347)
366 PRK11423 methylmalonyl-CoA dec 36.6 32 0.00083 15.3 3.0 10 120-129 118-127 (261)
367 TIGR00519 asnASE_I L-asparagin 36.5 33 0.00083 15.3 6.8 59 186-248 226-285 (347)
368 TIGR03029 EpsG chain length de 36.5 33 0.00083 15.3 5.3 15 269-283 254-268 (274)
369 COG0447 MenB Dihydroxynaphthoi 36.2 33 0.00084 15.3 4.0 30 234-263 114-158 (282)
370 PRK08508 biotin synthase; Prov 36.0 33 0.00085 15.2 3.6 193 79-285 41-277 (279)
371 cd06376 PBP1_mGluR_groupIII Li 35.9 33 0.00085 15.2 9.9 87 151-244 173-264 (463)
372 PRK08140 enoyl-CoA hydratase; 35.9 33 0.00085 15.2 5.7 11 119-129 120-130 (262)
373 cd07587 ML_beta-AS mammalian-l 35.6 34 0.00086 15.2 5.1 44 83-127 92-157 (363)
374 PRK11199 tyrA bifunctional cho 35.5 34 0.00086 15.2 6.7 67 8-92 98-164 (374)
375 PRK08638 threonine dehydratase 35.5 34 0.00086 15.2 8.4 124 80-214 84-211 (329)
376 PRK04183 glutamyl-tRNA(Gln) am 35.5 34 0.00086 15.2 6.5 99 188-295 296-404 (421)
377 PRK12447 histidinol dehydrogen 35.4 34 0.00086 15.2 4.1 52 71-122 116-173 (424)
378 CHL00200 trpA tryptophan synth 35.2 34 0.00087 15.2 5.0 148 84-299 109-263 (263)
379 cd01472 vWA_collagen von Wille 34.7 35 0.00089 15.1 3.3 33 166-205 122-154 (164)
380 pfam10087 DUF2325 Uncharacteri 34.4 35 0.0009 15.1 4.0 33 95-127 47-79 (96)
381 PRK07679 pyrroline-5-carboxyla 34.4 35 0.0009 15.1 6.6 102 9-114 4-111 (279)
382 TIGR02822 adh_fam_2 zinc-bindi 34.4 35 0.0009 15.1 4.1 36 60-95 216-253 (334)
383 cd00959 DeoC 2-deoxyribose-5-p 34.3 35 0.0009 15.1 3.5 43 60-107 21-63 (203)
384 pfam02581 TMP-TENI Thiamine mo 34.3 35 0.0009 15.1 5.8 46 82-127 13-62 (180)
385 TIGR01494 ATPase_P-type ATPase 34.2 35 0.0009 15.0 5.1 23 254-280 384-406 (478)
386 cd07569 DCase N-carbamyl-D-ami 34.0 36 0.00091 15.0 5.4 45 82-127 26-94 (302)
387 PRK07106 5-aminoimidazole-4-ca 33.8 36 0.00092 15.0 3.8 30 98-128 138-167 (391)
388 PRK11863 N-acetyl-gamma-glutam 33.6 36 0.00092 15.0 8.0 131 8-161 2-148 (314)
389 cd01391 Periplasmic_Binding_Pr 33.5 36 0.00093 15.0 13.3 184 37-236 2-207 (269)
390 cd06572 Histidinol_dh Histidin 33.4 36 0.00093 15.0 4.9 33 71-103 93-131 (390)
391 cd07580 nitrilase_2 Uncharacte 32.8 37 0.00095 14.9 5.1 45 82-127 20-84 (268)
392 cd06568 GH20_SpHex_like A subg 32.7 38 0.00096 14.9 2.6 83 105-193 72-170 (329)
393 cd01836 FeeA_FeeB_like SGNH_hy 32.6 38 0.00096 14.9 7.5 17 154-170 44-60 (191)
394 PTZ00067 40S ribosomal S23; Pr 32.6 21 0.00053 16.5 1.1 23 70-92 49-71 (143)
395 PRK12491 pyrroline-5-carboxyla 32.0 38 0.00098 14.8 8.8 102 8-113 2-108 (272)
396 COG1322 Predicted nuclease of 31.9 39 0.00098 14.8 3.0 17 18-34 194-210 (448)
397 pfam04227 Indigoidine_A Indigo 31.9 39 0.00098 14.8 4.9 147 87-247 3-179 (293)
398 PRK04211 rps12P 30S ribosomal 31.9 23 0.00057 16.3 1.2 21 71-91 52-72 (146)
399 COG2804 PulE Type II secretory 31.8 39 0.00099 14.8 5.0 26 188-216 311-337 (500)
400 TIGR01825 gly_Cac_T_rel pyrido 31.7 32 0.00083 15.3 2.0 121 78-206 149-292 (392)
401 PRK00877 hisD histidinol dehyd 31.6 39 0.00099 14.8 4.5 33 71-103 122-160 (428)
402 PRK13111 trpA tryptophan synth 31.6 39 0.00099 14.8 14.8 64 58-125 73-142 (256)
403 pfam00834 Ribul_P_3_epim Ribul 31.6 39 0.001 14.8 4.4 49 71-124 60-108 (201)
404 cd06312 PBP1_ABC_sugar_binding 31.6 39 0.001 14.8 14.5 85 37-129 2-90 (271)
405 PRK06450 threonine synthase; V 31.4 39 0.001 14.8 11.8 210 57-296 82-298 (336)
406 cd01493 APPBP1_RUB Ubiquitin a 31.3 40 0.001 14.7 9.0 119 7-133 19-149 (425)
407 cd06586 TPP_enzyme_PYR Pyrimid 31.2 40 0.001 14.7 6.6 64 166-243 3-66 (154)
408 pfam10609 ParA ParA/MinD ATPas 31.0 40 0.001 14.7 4.4 64 72-136 2-70 (81)
409 PRK08091 ribulose-phosphate 3- 30.9 40 0.001 14.7 4.4 30 71-100 15-44 (235)
410 PRK08818 prephenate dehydrogen 30.9 40 0.001 14.7 8.2 67 10-91 6-72 (373)
411 PRK05301 pyrroloquinoline quin 30.8 40 0.001 14.7 4.5 124 79-209 48-187 (375)
412 COG0134 TrpC Indole-3-glycerol 30.5 41 0.001 14.7 4.3 87 87-174 122-229 (254)
413 smart00870 Asparaginase Aspara 30.2 41 0.0011 14.6 6.6 54 188-247 220-273 (323)
414 TIGR03539 DapC_actino succinyl 30.1 41 0.0011 14.6 5.6 68 56-131 112-185 (357)
415 PRK07449 2-succinyl-6-hydroxy- 30.0 41 0.0011 14.6 6.9 22 278-299 495-518 (548)
416 COG4109 Predicted transcriptio 29.9 42 0.0011 14.6 3.8 41 88-132 128-168 (432)
417 PRK10517 magnesium-transportin 29.8 42 0.0011 14.6 4.0 22 274-295 667-689 (900)
418 PRK13789 phosphoribosylamine-- 29.7 42 0.0011 14.6 7.6 88 7-96 3-94 (426)
419 PRK13224 consensus 29.6 42 0.0011 14.6 6.7 108 151-298 103-216 (216)
420 PRK07590 L,L-diaminopimelate a 29.6 42 0.0011 14.6 3.4 57 75-131 157-219 (409)
421 KOG2742 consensus 29.6 33 0.00085 15.2 1.7 58 55-114 47-105 (367)
422 PTZ00159 60S ribosomal protein 29.5 42 0.0011 14.6 2.4 35 95-129 92-126 (134)
423 PRK13131 consensus 29.5 42 0.0011 14.6 4.5 66 223-300 186-255 (257)
424 PRK10820 DNA-binding transcrip 29.4 42 0.0011 14.6 3.5 93 193-297 213-311 (513)
425 COG1210 GalU UDP-glucose pyrop 29.0 43 0.0011 14.5 2.4 25 80-104 35-59 (291)
426 COG1064 AdhP Zn-dependent alco 29.0 43 0.0011 14.5 5.0 148 129-298 150-326 (339)
427 PRK00164 moaA molybdenum cofac 28.7 44 0.0011 14.5 5.8 39 83-121 148-189 (334)
428 KOG1002 consensus 28.6 44 0.0011 14.5 3.4 62 154-219 642-703 (791)
429 PRK11658 UDP-4-amino-4-deoxy-L 28.6 44 0.0011 14.5 11.9 123 54-177 76-213 (379)
430 cd01475 vWA_Matrilin VWA_Matri 28.4 44 0.0011 14.4 3.0 40 165-211 126-165 (224)
431 COG3961 Pyruvate decarboxylase 28.3 44 0.0011 14.4 5.0 88 145-243 373-463 (557)
432 COG0476 ThiF Dinucleotide-util 28.3 44 0.0011 14.4 8.8 122 7-133 29-157 (254)
433 TIGR03531 selenium_SpcS O-phos 28.2 44 0.0011 14.4 3.3 82 76-160 187-271 (444)
434 PRK11858 aksA trans-homoaconit 28.0 45 0.0011 14.4 17.0 225 60-296 79-348 (378)
435 KOG2499 consensus 28.0 45 0.0011 14.4 2.2 250 4-283 130-427 (542)
436 PRK06939 2-amino-3-ketobutyrat 27.8 45 0.0012 14.4 4.3 108 89-204 167-296 (395)
437 TIGR02668 moaA_archaeal probab 27.3 46 0.0012 14.3 4.5 130 78-214 46-195 (324)
438 TIGR03336 IOR_alpha indolepyru 27.3 46 0.0012 14.3 6.3 71 57-129 240-314 (595)
439 COG3892 Uncharacterized protei 27.3 46 0.0012 14.3 3.4 42 200-247 223-265 (310)
440 cd06570 GH20_chitobiase-like_1 27.2 46 0.0012 14.3 2.5 95 105-203 65-176 (311)
441 pfam02826 2-Hacid_dh_C D-isome 27.1 47 0.0012 14.3 9.2 107 8-125 36-147 (176)
442 cd06309 PBP1_YtfQ_like Peripla 27.0 47 0.0012 14.3 12.5 66 56-125 11-84 (273)
443 cd01473 vWA_CTRP CTRP for CS 27.0 47 0.0012 14.3 3.7 19 281-299 171-189 (192)
444 PRK07417 arogenate dehydrogena 27.0 47 0.0012 14.3 5.4 99 10-119 3-104 (280)
445 cd06315 PBP1_ABC_sugar_binding 26.9 47 0.0012 14.3 6.3 72 56-129 16-89 (280)
446 PRK02910 light-independent pro 26.9 47 0.0012 14.3 5.2 116 10-136 27-175 (524)
447 PRK00881 purH bifunctional pho 26.8 47 0.0012 14.3 4.0 11 196-206 292-302 (514)
448 cd00411 Asparaginase Asparagin 26.8 47 0.0012 14.3 7.9 107 150-266 175-298 (323)
449 smart00859 Semialdhyde_dh Semi 26.6 48 0.0012 14.2 8.2 92 10-104 1-101 (122)
450 cd00419 Ferrochelatase_C Ferro 26.6 48 0.0012 14.2 5.4 33 152-184 62-100 (135)
451 PRK05981 enoyl-CoA hydratase; 26.5 48 0.0012 14.2 6.6 53 87-144 95-147 (266)
452 PRK13558 bacterio-opsin activa 26.3 46 0.0012 14.3 2.0 82 5-102 36-119 (674)
453 pfam00710 Asparaginase Asparag 26.1 48 0.0012 14.2 7.6 54 188-247 215-268 (318)
454 cd06061 PurM-like1 AIR synthas 26.0 49 0.0012 14.2 6.3 80 82-161 63-162 (298)
455 TIGR02065 ECX1 exosome complex 25.9 49 0.0012 14.2 2.1 17 28-44 36-52 (231)
456 pfam00158 Sigma54_activat Sigm 25.9 25 0.00063 16.0 0.6 36 208-245 24-59 (168)
457 PTZ00110 helicase; Provisional 25.8 49 0.0013 14.1 2.1 74 32-110 218-298 (602)
458 TIGR00587 nfo apurinic endonuc 25.7 39 0.00099 14.8 1.5 24 188-214 268-291 (318)
459 TIGR01858 tag_bisphos_ald clas 25.6 50 0.0013 14.1 4.6 43 82-124 83-129 (282)
460 pfam04414 tRNA_deacylase D-ami 25.5 50 0.0013 14.1 6.4 99 202-300 84-207 (214)
461 PRK12738 kbaY tagatose-bisphos 25.4 50 0.0013 14.1 5.8 148 60-227 64-222 (286)
462 COG0604 Qor NADPH:quinone redu 25.4 50 0.0013 14.1 9.2 69 149-219 141-223 (326)
463 PRK02472 murD UDP-N-acetylmura 25.4 50 0.0013 14.1 6.7 36 1-38 1-37 (450)
464 PRK12737 gatY tagatose-bisphos 25.2 50 0.0013 14.1 5.7 150 58-227 62-222 (284)
465 PRK13771 putative alcohol dehy 25.2 50 0.0013 14.1 8.9 26 149-174 161-187 (332)
466 PRK07714 hypothetical protein; 25.1 51 0.0013 14.1 4.9 41 85-125 24-64 (100)
467 cd01284 Riboflavin_deaminase-r 25.1 51 0.0013 14.1 2.4 26 3-28 24-49 (115)
468 PRK07084 fructose-bisphosphate 24.9 51 0.0013 14.0 5.4 85 83-185 97-187 (321)
469 pfam01936 DUF88 Protein of unk 24.9 51 0.0013 14.0 6.0 17 194-211 79-95 (140)
470 COG0309 HypE Hydrogenase matur 24.8 51 0.0013 14.0 6.9 89 95-187 92-197 (339)
471 TIGR01822 2am3keto_CoA 2-amino 24.8 51 0.0013 14.0 3.9 90 86-182 162-276 (395)
472 PRK00035 hemH ferrochelatase; 24.7 51 0.0013 14.0 5.8 31 71-102 95-125 (325)
473 PRK10675 UDP-galactose-4-epime 24.7 52 0.0013 14.0 8.7 31 10-41 2-32 (338)
474 cd06167 LabA_like LabA_like pr 24.7 52 0.0013 14.0 5.3 18 194-212 89-106 (149)
475 KOG2774 consensus 24.7 52 0.0013 14.0 9.2 190 6-214 42-257 (366)
476 cd03321 mandelate_racemase Man 24.6 52 0.0013 14.0 5.0 159 50-221 112-277 (355)
477 PRK08374 homoserine dehydrogen 24.6 52 0.0013 14.0 6.4 162 9-181 3-190 (316)
478 pfam01888 CbiD CbiD. CbiD is e 24.6 52 0.0013 14.0 6.1 10 34-43 31-40 (261)
479 COG2910 Putative NADH-flavin r 24.6 52 0.0013 14.0 7.9 88 10-101 2-103 (211)
480 cd01445 TST_Repeats Thiosulfat 24.5 52 0.0013 14.0 2.8 49 188-244 55-103 (138)
481 PRK00286 xseA exodeoxyribonucl 24.5 52 0.0013 14.0 5.1 86 150-241 135-230 (443)
482 PRK12767 carbamoyl phosphate s 24.4 52 0.0013 14.0 6.0 114 10-124 3-126 (325)
483 TIGR03351 PhnX-like phosphonat 24.4 52 0.0013 14.0 7.2 118 165-293 94-219 (220)
484 KOG0023 consensus 24.3 52 0.0013 14.0 9.0 94 10-125 184-277 (360)
485 PRK08507 prephenate dehydrogen 24.2 53 0.0013 14.0 7.0 107 10-120 2-108 (275)
486 cd06562 GH20_HexA_HexB-like Be 24.2 53 0.0013 14.0 2.5 19 107-125 69-87 (348)
487 PRK06315 type III secretion sy 24.2 53 0.0013 13.9 8.0 107 151-296 165-274 (442)
488 pfam00290 Trp_syntA Tryptophan 24.2 53 0.0013 13.9 4.5 37 87-125 107-143 (258)
489 PRK13123 consensus 23.9 53 0.0014 13.9 4.8 42 87-130 110-154 (256)
490 pfam02829 3H 3H domain. This d 23.8 44 0.0011 14.5 1.5 62 211-282 33-98 (98)
491 PRK09875 putative hydrolase; P 23.7 54 0.0014 13.9 4.5 45 81-125 34-78 (292)
492 pfam04321 RmlD_sub_bind RmlD s 23.6 54 0.0014 13.9 8.2 100 11-133 1-103 (284)
493 PRK09461 ansA cytoplasmic aspa 23.6 54 0.0014 13.9 8.6 111 72-203 211-329 (335)
494 PRK11608 pspF phage shock prot 23.5 54 0.0014 13.9 2.8 84 209-297 32-120 (325)
495 PRK08198 threonine dehydratase 23.5 54 0.0014 13.9 8.4 163 59-239 60-223 (406)
496 PRK06801 hypothetical protein; 23.4 55 0.0014 13.9 5.8 43 84-126 87-133 (286)
497 pfam02409 consensus 23.3 55 0.0014 13.8 3.2 30 76-105 72-101 (107)
498 PRK06395 phosphoribosylamine-- 23.2 55 0.0014 13.8 6.0 87 10-98 4-93 (435)
499 PRK06460 hypothetical protein; 23.1 55 0.0014 13.8 6.0 86 43-131 82-170 (375)
500 cd01562 Thr-dehyd Threonine de 23.1 55 0.0014 13.8 6.7 153 50-211 44-198 (304)
No 1
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=0 Score=758.55 Aligned_cols=289 Identities=65% Similarity=1.061 Sum_probs=284.7
Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH
Q ss_conf 95677179739998888437799999998626981899765899886872774577531407850357886368862120
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300)
||||+|||||||||||||+||+||+++|++| |||||||||||||||+++| +||||||+||++++++|+|+|||||
T Consensus 1 m~ili~~~trv~vqGiTG~~g~~h~~~m~~y-GT~iVaGVtPgkgG~~~~g----vPVf~tV~eAv~~~~~d~svIfVPp 75 (289)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGTTHLG----LPVFNTVKEAVEATGATASVIYVPP 75 (289)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCEEEEC----CCCCCCHHHHHHHCCCCEEEEEECH
T ss_conf 9389659983999878883777999999986-8956999779978517658----3330659999861288869997078
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 45678899998539958998058846888999999840177189406851013555100020011235778679998054
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
++++||++||+++|||++||||||||++||++++++++++++|||||||+|+|+|+++|+|+||.++|+||+||+|||||
T Consensus 76 ~~a~dAi~EAi~agI~~iV~ITEgiP~~D~~~i~~~a~~~g~riIGPNc~GiI~Pg~~kiGi~p~~~~~pG~VgiiSrSG 155 (289)
T PRK05678 76 PFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKRYLKGKKTRLIGPNCPGIITPGECKIGIMPGHIHKKGRVGIVSRSG 155 (289)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 99999999998679988999438997888999999873079889889997016677240123562247798689997776
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
+|+||+++|++++|+|||++||+|||+++|++|.|+|++|++||+||+|+|||||||++|+++++|++. .++||||
T Consensus 156 tLtye~~~~l~~~g~G~S~~VgiGgD~i~G~~f~d~L~~f~~Dp~T~~IvliGEiGG~~E~~aa~~i~~----~~~KPVv 231 (289)
T PRK05678 156 TLTYEAVAQLTDLGLGQSTCVGIGGDPINGTNFIDVLKAFEEDPETDAIVMIGEIGGSAEEEAAEWIKA----NVTKPVV 231 (289)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH----CCCCCEE
T ss_conf 579999999997698669898527887678449999999742977327999975598799999999985----5899679
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf 9984301576553220011224888899999999998897578898999999999984
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
+|++||+||+||||||||||++++.+++++|++|||+||+.++++|+|++++++++|.
T Consensus 232 a~iaG~~AP~gk~mGHAGAIi~~~~gta~~K~~al~~aGv~Va~~p~~i~~~~~~~l~ 289 (289)
T PRK05678 232 GYIAGVTAPPGKRMGHAGAIISGGKGTAEEKIEALEAAGVKVARSPSEIGKTLKEVLK 289 (289)
T ss_pred EEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHC
T ss_conf 9995145899972332122204898889999999998779757999999999999849
No 2
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=0 Score=742.09 Aligned_cols=291 Identities=62% Similarity=1.037 Sum_probs=282.6
Q ss_pred EEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 56771797399988884377999999986269818997658998868727745775314078503578863688621204
Q gi|254781050|r 2 SILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 2 sil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
.||+|+|||||||||||++|+||+++|++| |||||||||||||||++++ +||||||+||++++++|+|+|||||+
T Consensus 17 ~ili~~~TkViVQGiTG~~g~~h~~~m~~y-GT~iVaGVtPgkgG~~~~g----vPVf~tV~eAv~~~~~d~SvIfVPp~ 91 (309)
T PTZ00187 17 RVWVNKDTKVICQGITGKQGTFHTEQALAY-GTKMVGGVSPKKAGTTHLG----LPVFGTVAEAKKATGADASVIYVPPP 91 (309)
T ss_pred CEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCEECCC----CCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 489869981999768882888999999986-8977987478868724379----88766599999856898799962641
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-CCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 5678899998539958998058846888999999840-177189406851013555100020011235778679998054
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLE-KSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~-~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
|++||++||+++||+++||||||+|++||++++++++ +.++|||||||+|+|+|+++|+|+||.++|+||+||+|||||
T Consensus 92 ~a~dAilEAi~agI~liV~ITEgIP~~Dm~~v~~~~~~~~~t~liGPNcpGiI~Pg~~kiGimP~~i~~pG~VGivSRSG 171 (309)
T PTZ00187 92 HAAAAIIEAIEAEIPLVVVITEGIPQHDMLKVKSMLLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHQKGKIGIVSRSG 171 (309)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCEEEEECCHHHCCCCCEEEEECCC
T ss_conf 11889999997799879993389888889999999986699599899997027068208955347855788358994477
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
||+||++++++++|+|||++||+|+|+++|++|.|+|++|++||+|++|+|+|||||++|+++|+||++. ..+|||+
T Consensus 172 TLTyE~~~~lt~~G~GqSt~VgIGGDpi~Gt~f~d~L~~f~~D~~T~aIVliGEIGG~~Ee~aA~~Ik~~---~~~KPVv 248 (309)
T PTZ00187 172 TLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAADWIKNN---PTKKPVV 248 (309)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHC---CCCCCEE
T ss_conf 5289999999866986699998469875897899999998629576589998165986999999999966---9999889
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC
Q ss_conf 998430157655322001122488889999999999889757889899999999998439
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300)
+|++|++||+||||||||||++++.+++++|++|||+||+.++++|+|++++|+++|++.
T Consensus 249 a~IAG~~AP~gkrmGHAGAIi~~~~gta~~K~~al~~AGv~Va~~p~ei~~~v~~~l~~~ 308 (309)
T PTZ00187 249 SFIAGITAPPGRRMGHAGAIVSGGKGTAKGKIEALRAAGVTVSKSPAQLGKTMAEVMKKK 308 (309)
T ss_pred EEEEECCCCCCCCCCCHHEEECCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHC
T ss_conf 998125689997043200010289888999999999886987899999999999999864
No 3
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=702.08 Aligned_cols=292 Identities=61% Similarity=1.022 Sum_probs=286.1
Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH
Q ss_conf 95677179739998888437799999998626981899765899886872774577531407850357886368862120
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300)
|+||+||||||+|||+||++|+||+++|++| ||++|+|||||||||++.+ +|||+||+||++++++|+|+|||||
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~~~g----~PVf~tV~EA~~~~~a~~svI~Vp~ 75 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQTILG----LPVFNTVEEAVKETGANASVIFVPP 75 (293)
T ss_pred CCEEECCCCEEEEECCCCCCCHHHHHHHHHH-CCCEEECCCCCCCCEEECC----CCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9446358974898336542003889999972-9856642368977438837----5478999999870289779996481
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 45678899998539958998058846888999999840177189406851013555100020011235778679998054
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
+|++|+++||+|+|++++||||||+|.+||+++++++++.++|+|||||+|+|.|+++++|+||+++|+||+||+|||||
T Consensus 76 ~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSG 155 (293)
T COG0074 76 PFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSG 155 (293)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
T ss_conf 77899999998579957999959998889999999998669799879999637478533510523405788569996686
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
||+||++++++++|+|||++||+|||+++|++|.|+|++|++||+|++|+|+|||||.+|+++|+|+++. ..+||||
T Consensus 156 TLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~~---~~~KPVV 232 (293)
T COG0074 156 TLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKAN---ATRKPVV 232 (293)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH---CCCCCEE
T ss_conf 6399999999763885589998578876881599999986458674079999267993899999999963---4689869
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC
Q ss_conf 998430157655322001122488889999999999889757889899999999998439
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300)
+|++|||||+||||||||||++++.+++++|++||+.||+.++++|.+++++++++|.++
T Consensus 233 a~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 233 AYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC
T ss_conf 998436798233012103433078765899999999759741179999999999986326
No 4
>KOG1255 consensus
Probab=100.00 E-value=0 Score=666.06 Aligned_cols=294 Identities=63% Similarity=1.049 Sum_probs=285.9
Q ss_pred EEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 56771797399988884377999999986269818997658998868727745775314078503578863688621204
Q gi|254781050|r 2 SILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 2 sil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
.+++|||||||+||+|||||+||.+++++| |||+|+||||+|+|+++.| +|||+||+||++++++|+++|||||+
T Consensus 32 nl~ink~TkVi~QGfTGKqgTFHs~q~~eY-gTk~VgG~~pkK~Gt~HLG----~PVF~sV~eA~~~t~a~AsvIyVPpp 106 (329)
T KOG1255 32 NLKINKDTKVICQGFTGKQGTFHSQQALEY-GTKVVGGVNPKKGGTTHLG----LPVFNSVAEAKKETGADASVIYVPPP 106 (329)
T ss_pred CEEECCCCEEEEECCCCCCCCEEHHHHHHH-CCCEEECCCCCCCCCCCCC----CHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 146458865998323577653207888872-7713304688857532128----42566799998740898349980782
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 567889999853995899805884688899999984-0177189406851013555100020011235778679998054
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARL-EKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A-~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
++..|+.|++++.|+++||||||+|+|||.|+.... ++...|++||||+|||+|++||+||||++++++|.||+|||||
T Consensus 107 ~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg~Ihk~G~IGIVSRSG 186 (329)
T KOG1255 107 FAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPGHIHKRGKIGIVSRSG 186 (329)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCC
T ss_conf 78899999885448679996279855668999999854333422079998764712104612351146686268996587
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
||+||.+.|.++-|+|||.||++|||+++|+||+|+|+.|.+||+|+.|+|+|||||.+|+++|+|++++-.....||||
T Consensus 187 TLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~flk~~nSg~~~kPVv 266 (329)
T KOG1255 187 TLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAEFLKEYNSGSTAKPVV 266 (329)
T ss_pred CEEEHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 24600401204135663468861478889964899999882585634179996147714688999999841589888645
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC
Q ss_conf 998430157655322001122488889999999999889757889899999999998439
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300)
.|++|.+||+||||||||||++++.|+|.+|++|||+|||.+.+||..|+..|.+.+.+|
T Consensus 267 sFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~ 326 (329)
T KOG1255 267 SFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKL 326 (329)
T ss_pred EEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHC
T ss_conf 785146579865346663066678764688999998659489728778879999998751
No 5
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=100.00 E-value=0 Score=494.33 Aligned_cols=278 Identities=27% Similarity=0.359 Sum_probs=243.6
Q ss_pred CEEEEECCCEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCC-CCCCCCHHHH-CCCCCCCEEE
Q ss_conf 95677179739998888---43779999999862698189976589988687277457-7531407850-3578863688
Q gi|254781050|r 1 MSILVDKNTKVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVN-VPVFTTVAEA-KERTAANASV 75 (300)
Q Consensus 1 msil~~~~t~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~-iPvy~sv~ea-~~~~~~D~av 75 (300)
|.-|+++++ |-|.|.. ||-|-.-++++++++-+--+.+|||+. +- +.++ +|+|+||.|. +++ +|+||
T Consensus 1 L~~Lf~P~S-vAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~-~i----~i~Gr~k~Y~~~~~~dP~~--VDLAV 72 (457)
T TIGR02717 1 LEKLFNPKS-VAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKA-GI----EILGRVKAYPSVLEIDPDE--VDLAV 72 (457)
T ss_pred CCCCCCCCC-EEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCC-CE----EEEECCCCCCCHHHCCCCC--CCEEE
T ss_conf 952318871-5897124889851002200000378303687622788-71----4630114578711148997--34799
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCCH------HHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC-CCCC
Q ss_conf 62120456788999985399589980588468------8899999984017718940685101355510002001-1235
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIPV------LDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP-GSIF 148 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip~------~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p-~~~~ 148 (300)
|.||+.+|+++++||+++|||.+||||.||.| +.+.||+++||++|||||||||+|+|||. .+++..+ ....
T Consensus 73 ivvPa~~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~-~~lNAtFA~~~p 151 (457)
T TIGR02717 73 IVVPAKLVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTE-IKLNATFAPTMP 151 (457)
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCC-HHHHHCCCCCCC
T ss_conf 9728567999999986179518999714864531678999999999997678817767362258144-021100135788
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf 77867999805414789999999719951676405567446789999999997399872889997058724899999999
Q gi|254781050|r 149 RKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLK 228 (300)
Q Consensus 149 ~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~ 228 (300)
++|+|+|+||||+|+..+++|..++++|||++||+||-+++ ++.|+|+||.+||+|++|++|.| |.. |+.+|++
T Consensus 152 ~~G~Iaf~SQSGAl~~a~Ldwa~~~~vGfS~~VS~GNkAD~--~e~Dlley~~~D~~T~~I~~Y~E--g~~--DG~~Fl~ 225 (457)
T TIGR02717 152 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADI--DESDLLEYLADDPDTKVILLYLE--GIK--DGRKFLK 225 (457)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEC--CHHHHHHHHHCCCCCCEEEEECC--CCC--CHHHHHH
T ss_conf 98877789712589999999998727813477826741111--65778889853989408999717--870--4168999
Q ss_pred HHHHCCCCCCEEEEEEEECCCCCC--CCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
Q ss_conf 864226755268998430157655--32200112248888999999999988975788989999999999843
Q gi|254781050|r 229 DEAKRGRKKPIVGFVAGKTAPPGR--TMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 229 ~~~~~~~~KPVva~~~GrtAp~g~--~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300)
.+++.+++||||++|+|+| +.|+ ..|||||++ |+.+.+.+||||+|+++|+|++||.++ +++|..
T Consensus 226 ~A~~~s~~KPiv~lKsG~s-~~GakAA~SHTGaLA----Gs~~~y~aaf~q~G~iRa~~~~ELfd~-A~~L~~ 292 (457)
T TIGR02717 226 TAKEISKKKPIVVLKSGTS-EAGAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDL-ARLLSN 292 (457)
T ss_pred HHHHHHHCCCEEEEECCCC-HHHHHHHHHCCCHHH----HHHHHHHHHHCCCCEEEEECHHHHHHH-HHHHHC
T ss_conf 9888630598899936888-345676521023133----668999987430143887017788999-999835
No 6
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit; InterPro: IPR005810 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to two regions, a glycine-rich conserved region, located in the second half of ATP citrate lyase and in the alpha subunits of succinyl-CoA ligases and malate-CoA ligase; and the active site phosphorylated histidine residue, which is located some 50 residues to the C-terminal of the first region. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=459.56 Aligned_cols=286 Identities=64% Similarity=1.074 Sum_probs=279.5
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 67717973999888843779999999862698189976589988687277457753140785035788636886212045
Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
++++++|++++||+||++++||++++++| ||++++|++|+|||+.+.+ +|+|+++.|+.++++++.+++|+|++|
T Consensus 1 ~~~~~~~~~~~~g~~g~~g~~~~~~~~~~-g~~~~gg~~pg~gg~~~~~----~p~~~~~~~~~~~~~~~~~~~~~p~~~ 75 (288)
T TIGR01019 1 ILLDKDTKVIVQGITGKQGSFHTEQLLAY-GTNIVGGVTPGKGGTEVLG----LPVFDSVKEAVEETGANASVIFVPPPF 75 (288)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHH-CCHHCCCCCCCCCCCEEEC----CCCHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 93356661467302365330236778761-2111023356767630104----541124688876418741588726630
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC--CCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 67889999853995899805884688899999984017--7189406851013555100020011235778679998054
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS--SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~--g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
+.|+++|+.+++++.++|+|||+|.+|+.++..+..+. +.+++||||+|++.|+.+++|++|.+++++|++|++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~g~~~~~~gp~~pg~~~p~~~~~g~~p~~~~~~g~~g~~~~~g 155 (288)
T TIGR01019 76 AADAILEAIDAGLELIVCITEGIPVLDTLKVKRYLEESGHGTRLIGPNCPGVITPGECKLGILPGHIHKPGNVGLVSRSG 155 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCEEECCCCCEEEECCC
T ss_conf 23566655413640799962677605789999986414763155347787521466420000120010356400442354
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
+|+|+..+++++.++|+|+++++|+|+++|++|.|+|+.|++||+|+++++++|+||..|+++++|++.. ..||++
T Consensus 156 ~l~~~~~~~~~~~g~g~~~~~g~ggdp~~g~~~~~~~~~~~~d~~~~~~~~~g~~gg~~~~~~~~~~~~~----~~~p~~ 231 (288)
T TIGR01019 156 TLTYEAVWQLTEAGFGQSTCVGIGGDPVNGTSFVDVLELFEEDPETEAVVLIGEIGGSAEEEAADFIKEN----LSKPVV 231 (288)
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH----CCCCHH
T ss_conf 1257778877641266201441366544552278889875147665058886214785036789998752----144211
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 998430157655322001122488889999999999889757889899999999998
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELL 297 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l 297 (300)
.|++|.++|++++|||+|++++++.+++..|.++++.+|+.+.++|.++++.+.++|
T Consensus 232 ~~~~g~~~p~g~~~g~~g~~~~g~~g~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~l 288 (288)
T TIGR01019 232 GFIAGLTAPPGKRLGHAGAIISGGKGTAESKIEALEAAGVTVGKSPSDIGELLAELL 288 (288)
T ss_pred HHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHC
T ss_conf 111023467543233333022167552467888887515211112567789998619
No 7
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=9.8e-45 Score=305.74 Aligned_cols=273 Identities=24% Similarity=0.368 Sum_probs=227.0
Q ss_pred EEEECCCEEEEECCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC
Q ss_conf 6771797399988884377---9999999862698189976589988687277457753140785035788636886212
Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAG---TFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300)
Q Consensus 3 il~~~~t~vivqGitg~~g---~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300)
-|+..++ |.|.|-.++.+ ..-.+..++|+ -.-+..|||... ++.| ++.|+++.|.++. +|++++.||
T Consensus 6 ~~~~p~s-vavigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~~--~v~G----~~ay~s~~~lp~~--~dlav~~v~ 75 (598)
T COG1042 6 RLFAPKS-IAVIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKYD--EVLG----VKAYTSVADLPDA--PDLAVIVVP 75 (598)
T ss_pred HHCCCCE-EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEECCCCCC--CCCC----CCCCCHHHHCCCC--CCCEEEEEC
T ss_conf 1107763-7887146875215799999998568-885574276532--3366----3146407557888--770689852
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHH------HHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCC-C--C
Q ss_conf 045678899998539958998058846888------999999840177189406851013555100020011235-7--7
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLD------MVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIF-R--K 150 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d------~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~-~--p 150 (300)
+..+++++.||..+|++.+|++++||.+.. +.++++.|+++++|++||||+|++++... ++......+ . +
T Consensus 76 ~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~g-lna~f~p~~~~~~~ 154 (598)
T COG1042 76 AKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPIIG-LNATFDPVFGLGRG 154 (598)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf 44568999872005873589962456788776767788999998855963862332453112236-56312653233478
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 86799980541478999999971995167640556744678999999999739987288999705872489999999986
Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDE 230 (300)
Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~ 230 (300)
|+++++||||+++..+++|..+.++|+|.++++||-.+. ++.|++++|.+|+.|++|.||.| |.. ++++|+..+
T Consensus 155 g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~ad~--~~~d~~~~~~~D~~tk~i~Ly~E--~~~--~~r~fl~~a 228 (598)
T COG1042 155 GGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADR--DESDLLEYLADDPRTKAIGLYIE--GVK--DGRKFLNAA 228 (598)
T ss_pred CCEEEEEECHHHHHHCCCHHHHCCCCEEEEEEECCHHHC--CCHHHHHHHHHCCCCEEEEEEEC--CCH--HHHHHHHHH
T ss_conf 873799952578876165234268753699961425433--84466777752765307999842--544--279998899
Q ss_pred HHCCCCCCEEEEEEEECCCCCCC-CCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 42267552689984301576553-2200112248888999999999988975788989999999999
Q gi|254781050|r 231 AKRGRKKPIVGFVAGKTAPPGRT-MGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVEL 296 (300)
Q Consensus 231 ~~~~~~KPVva~~~GrtAp~g~~-~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~ 296 (300)
++...+||+|++|+||+....|+ .+|||+++ |+...+.+||+|+|+++++++.|+.+.++.+
T Consensus 229 ~~~~~~kpii~lk~gr~~~~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l 291 (598)
T COG1042 229 RAAERKKPIIALKAGRSEAGAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKAL 291 (598)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHCCCCCCC----CCCCCCHHHHHHCCCEECCCHHHHHHHHHHH
T ss_conf 98735787799963478788899860261103----6420027988640722316749999999986
No 8
>KOG1254 consensus
Probab=100.00 E-value=2.7e-37 Score=258.38 Aligned_cols=289 Identities=27% Similarity=0.378 Sum_probs=255.3
Q ss_pred EEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCCEEECCCCCCCCCCCCHHHHCC-CCCCCEEEEECC
Q ss_conf 771797399988884377999999986269818997658---9988687277457753140785035-788636886212
Q gi|254781050|r 4 LVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP---KKGSTYWTGGNVNVPVFTTVAEAKE-RTAANASVIYVP 79 (300)
Q Consensus 4 l~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P---gkgg~~~~g~~~~iPvy~sv~ea~~-~~~~D~avI~VP 79 (300)
|+..|||.+++|...|.-+ ++...-..|+|-+++ ++..-+|..+.+.||||.|..++.. ++.+|.-+-|-.
T Consensus 5 lfe~dtKAi~~~~q~ravq-----lckr~~psVaa~~~~~~~~lqk~~~g~kei~IPv~~t~~~a~~~hp~~dv~~~faS 79 (600)
T KOG1254 5 LFEYDTKAIVWGMQQRAVQ-----LCKRHFPSVAAIIYFTGDRLQKIYFGQKEILIPVEKTMENALVEHPEADVEPWFAS 79 (600)
T ss_pred HHCCCCHHHHHHHHHHHHH-----HHHCCCCCCEEEECCCCCCHHEEECCCCEEEEEHHHHHHHHHHCCCCCCEEECHHH
T ss_conf 1114417777665530136-----65234765122302464202302037740773104667999860864102311444
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC--------EECCCCCCC
Q ss_conf 045678899998539-95899805884688899999984017718940685101355510002--------001123577
Q gi|254781050|r 80 PSGAGDAIIESIEAE-IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG--------IMPGSIFRK 150 (300)
Q Consensus 80 ~~~v~dai~Ea~~ag-ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg--------i~p~~~~~p 150 (300)
-+.|.+.-+|+.+.+ ++++-+|.||+|+.+.++++..+++.+.-++||-+.|.+-|+..++| ++..+.+||
T Consensus 80 ~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a~~k~~~iiGPaTvggVePg~fkignt~g~~dnil~~klyR~ 159 (600)
T KOG1254 80 TRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGAEVKGVGIIGPATVGGVEPGVFKIGNTGGMMDNILNSKLYRP 159 (600)
T ss_pred HHHHCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 34320334777635764189997158807789998743112363687300221155786566887742454221101378
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 86799980541478999999971995167640556744678999999999739987288999705872489999999986
Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDE 230 (300)
Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~ 230 (300)
|+++++|+||++..|+.+..++.-.|....+.+|+|+++|+++.|.+..+.+||.+|-|++++|+||..|... ++..
T Consensus 160 Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey~~---~e~~ 236 (600)
T KOG1254 160 GSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEYTF---LEAN 236 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCEEEH---HHHH
T ss_conf 6579994478864122113440103411322205677668117652035523670106887322266331545---4454
Q ss_pred HHCCCCCCEEEEEEEECC---CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC
Q ss_conf 422675526899843015---7655322001122488889999999999889757889899999999998439
Q gi|254781050|r 231 AKRGRKKPIVGFVAGKTA---PPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300)
Q Consensus 231 ~~~~~~KPVva~~~GrtA---p~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300)
+....+||+|+|..|..| +...++||+|+-+.....++.+|+++++.+|+.++++++.|+..+.+.+..|
T Consensus 237 k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~l 309 (600)
T KOG1254 237 KEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADIQETYEFL 309 (600)
T ss_pred HCCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHCCHHHHHHCCHHHHHCCCCCCCCHHHHHHHHCCCHHCC
T ss_conf 1477668879994675220240344213341222111566664031355415657631334433323420111
No 9
>pfam06263 consensus
Probab=99.95 E-value=1.8e-26 Score=189.35 Aligned_cols=185 Identities=25% Similarity=0.359 Sum_probs=157.8
Q ss_pred CCCCCCHHHHCCC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 7531407850357-886368862120456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 56 VPVFTTVAEAKER-TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 56 iPvy~sv~ea~~~-~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
.|-+.|...|.+. +++|+++|.||..++..-+++|+++|.. +.++|+++|..|+.+|++.|+++|..++||.|---|.
T Consensus 100 ~~~~~t~~~A~~~~p~AnlalISvpG~yAa~eA~~AL~~gl~-VmlFSDNVs~edE~~LK~~A~ekGLlvMGPDCGTaii 178 (514)
T pfam06263 100 GQEARTWDSALELLPEANLALISVPGEYAAAEAEKALNLGLH-VMLFSDNVSVEDEVALKQLAHEKGLLVMGPDCGTAII 178 (514)
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHH
T ss_conf 778864999996289998799962708899999999987993-7997499977999999999987794888898622442
Q ss_pred CCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 551000200112357786799980541478999999971995167640556----7446789999999997399872889
Q gi|254781050|r 135 PDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGG----DPVKGTEFIDVLELFLADEATESIV 210 (300)
Q Consensus 135 p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~----D~~~G~~~~d~L~~~~~Dp~T~~Iv 210 (300)
-|. ++-+++..+||+||+|.-|||-..|+..++.+.|-|+|+++|+|| +-+-|.++.|.|++|++||+|++|+
T Consensus 179 ~Gv---pLaFaNvV~~G~IGiVgASGTG~QEvt~~Id~~G~GVshaIGtGGRDLs~eVGGisml~al~aL~~Dp~T~vIv 255 (514)
T pfam06263 179 NGV---PLAFANVVRRGDIGVVGASGTGIQEVTVIIDRLGGGISQAIGTGGRDLSAEVGGIMMLDALDALEQDEETKVIV 255 (514)
T ss_pred CCC---CHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 585---13420445678711785166446789999987178732220367740257753468999999985599832999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 99705872489999999986422675526899843015
Q gi|254781050|r 211 MVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTA 248 (300)
Q Consensus 211 l~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtA 248 (300)
++..+- + .+.++-+.+. .....||||++.-|...
T Consensus 256 lISKPP--a-~eV~~kVl~~-~~~~~KPVV~~FLG~~~ 289 (514)
T pfam06263 256 LISKPP--A-PEVAEKILEL-LKASGKPVVVLFLGGDP 289 (514)
T ss_pred EECCCC--C-HHHHHHHHHH-HHHCCCCEEEEEECCCC
T ss_conf 965899--7-8999999999-98429988999847998
No 10
>PRK06091 membrane protein FdrA; Validated
Probab=99.95 E-value=3.5e-26 Score=187.42 Aligned_cols=186 Identities=22% Similarity=0.391 Sum_probs=157.1
Q ss_pred CCCCCCHHHHCCC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 7531407850357-886368862120456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 56 VPVFTTVAEAKER-TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 56 iPvy~sv~ea~~~-~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
.+-+.|...|.+. +++|+++|.||..++..-+++|+++|.. +.++|+.+|.+|+.+|++.|+++|..++||.|---|.
T Consensus 102 ~~~~~s~~~A~~~~p~AnlalISVpG~yAa~EA~~AL~~gl~-VmlFSDNVs~edE~~LK~~A~ekGLlvMGPDCGTaII 180 (555)
T PRK06091 102 LTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTAMI 180 (555)
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHH
T ss_conf 667642999996289998799961707779999999987994-7997599977899999999987793888898631341
Q ss_pred CCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 551000200112357786799980541478999999971995167640556----7446789999999997399872889
Q gi|254781050|r 135 PDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGG----DPVKGTEFIDVLELFLADEATESIV 210 (300)
Q Consensus 135 p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~----D~~~G~~~~d~L~~~~~Dp~T~~Iv 210 (300)
-|. ++-+++..++|+||+|.-|||-..|+..++.+.|-|+|+++|+|| +-+-|.++.|.|++|++||+|++|+
T Consensus 181 ~Gv---pLaFANvV~~G~IGIVgASGTG~QEvs~~Id~~G~GVshaIGtGGRDLs~eVGGis~l~al~aL~~Dp~T~vIv 257 (555)
T PRK06091 181 AGT---PLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLA 257 (555)
T ss_pred CCC---CHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 685---12420445688712795166546689999987178732220377740256753378999999985599832999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 997058724899999999864226755268998430157
Q gi|254781050|r 211 MVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAP 249 (300)
Q Consensus 211 l~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp 249 (300)
++..+- + .+.++-+.+. .....||||++.-|...+
T Consensus 258 lISKPP--a-~eV~~kVl~~-~~~~~KPVV~~FLG~~p~ 292 (555)
T PRK06091 258 FVSKPP--A-EAVRLKIINA-MKATGKPVVALFLGYTPA 292 (555)
T ss_pred EECCCC--C-HHHHHHHHHH-HHHCCCCEEEEEECCCCC
T ss_conf 965899--7-8999999999-984299889997279976
No 11
>pfam00549 Ligase_CoA CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP.
Probab=99.94 E-value=2.3e-26 Score=188.59 Aligned_cols=126 Identities=32% Similarity=0.411 Sum_probs=117.7
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECC-CHHHHHHHHHHHHHHHC-
Q ss_conf 9805414789999999719951676405567446789999999997399872889997058-72489999999986422-
Q gi|254781050|r 156 LSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIG-GSAEEEAAQFLKDEAKR- 233 (300)
Q Consensus 156 vSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiG-G~~E~~aa~fi~~~~~~- 233 (300)
++.+|+|+||.++++++.|.++|.++.+|+|++.++++.|.|+.|.+||+|++|++.+|+| |..|+.++.++++.++.
T Consensus 1 ~~nGggL~~et~~~l~~~G~~~a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~~e~~A~~~v~a~~~~~ 80 (128)
T pfam00549 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGACEDPAGGLLKAIKEAR 80 (128)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 94538699999999998599832588837999863379999999957888629999987743626999999999999846
Q ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE
Q ss_conf 675526899843015765532200112248888999999999988975
Q gi|254781050|r 234 GRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGIC 281 (300)
Q Consensus 234 ~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~ 281 (300)
.++||||++++|+++|++++|+|+|+|..++.+++++|.+|+|.||++
T Consensus 81 ~~~~PvVa~i~Gt~a~~~~~~ghagal~~~G~~~~~sk~~A~~~Ag~i 128 (128)
T pfam00549 81 ARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQALRAAGAV 128 (128)
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 998758999930269965533787899977996430199999976999
No 12
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=99.77 E-value=2.2e-18 Score=137.71 Aligned_cols=94 Identities=43% Similarity=0.588 Sum_probs=89.2
Q ss_pred ECCCEEEEECCC--CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 179739998888--437799999998626981899765899886872774577531407850357886368862120456
Q gi|254781050|r 6 DKNTKVLVQGLT--GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 6 ~~~t~vivqGit--g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
|++++|++||++ |++.++|..++..| ++..+.+|+|.|.|+++.| +|||++++|+++++++|+++|+||++++
T Consensus 1 d~~~~v~liG~g~lG~al~~~~~~~~~~-~i~~vfdv~p~~~G~~i~g----ipv~~~l~~~~~~~~idiaii~VP~~~a 75 (96)
T pfam02629 1 DKDTKVAVIGASGLGIQGLYHFIQLLGY-GIKMVFGVNPRKGGTEVGG----IPVYKSVDELEEDTGVDVAVITVPAPFA 75 (96)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCEECC----EEEECCHHHHHHCCCCCEEEEEECHHHH
T ss_conf 9977499999898278887768877148-6189980692427758889----9843108777415588789999478998
Q ss_pred HHHHHHHHHCCCCEEEEECCC
Q ss_conf 788999985399589980588
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEG 104 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteG 104 (300)
.+++.||+++|||.++++|+|
T Consensus 76 ~~~~~~~v~~GIk~i~nft~g 96 (96)
T pfam02629 76 QEAIDELVDAGIKGIVNITPG 96 (96)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999998699899994889
No 13
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.38 E-value=1.5e-05 Score=55.82 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=92.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 7399988884377999999986269818997658998-------868727745775314078503578863688621204
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG-------STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg-------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
.||.+-|.+||.|+.-.+...+..+-.+++++..... ++..+-...++|+++++.+..+. +|+.|=|..|.
T Consensus 3 ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~--~DVvIDFS~p~ 80 (265)
T PRK00048 3 IKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDD--FDVLIDFTTPE 80 (265)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCC--CCEEEECCCHH
T ss_conf 5999988888779999999986899799999946897233653566527676784311789886055--99899899889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC-CEE
Q ss_conf 567889999853995899805884688899999984017718940685-101
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC-PGI 132 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc-~Gi 132 (300)
.+.+.+..|.+.+++ +|+=|-|+...+..++.+.+++-+ -++-||- +|+
T Consensus 81 ~~~~~~~~~~~~~~~-~ViGTTG~~~~~~~~i~~~s~~ip-il~apNfSlGv 130 (265)
T PRK00048 81 ATLENLEFALEHGKP-LVIGTTGFTEEQLAALREAAKKIP-VVIAPNFSVGV 130 (265)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHCCCCC-EEEECCHHHHH
T ss_conf 999999999974997-799608999899999997465887-89978558999
No 14
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=98.38 E-value=3e-06 Score=60.19 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=88.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 3999888843779999999862-698189976589988687277457753140785035788636886212045678899
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY-CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y-~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
|+.+.|. |+.|..|.+..... .+.++++-+.+.+.-.....+..++|+|++..|..+..++|+.+|++|+..-.+.+.
T Consensus 2 ki~iiG~-G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~v~I~tp~~~H~~~~~ 80 (120)
T pfam01408 2 RVGIVGA-GKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGVPAYSDLEELLADPDVDAVSVATPPGLHFELAL 80 (120)
T ss_pred EEEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 8999907-799999999998559997899998299999999999839967886999973778898999087461899999
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 9985399589980588468889999998401771894
Q gi|254781050|r 89 ESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 89 Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+|+++|....+==.=.....+..++.+.++++|..+.
T Consensus 81 ~~l~~g~~v~~EKP~~~~~~e~~~l~~~a~~~~~~~~ 117 (120)
T pfam01408 81 AALEAGKHVLVEKPLATTVEEAKELVELAEKKGVRLS 117 (120)
T ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9998199899968981999999999999998299699
No 15
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=98.26 E-value=5.9e-05 Score=51.95 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=89.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---CEEEC--CCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 399988884377999999986269818997658998---86872--7745775314078503578863688621204567
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG---STYWT--GGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg---g~~~~--g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
||.|-|.+||.|+.-.+...++.+.++++++..... ++... .....++++++..+..+ .+|+-|=|-.|..+.
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~DVvIDFS~p~~~~ 79 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLA--DADVLIDFTTPEATL 79 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCC--CCCEEEEECCHHHHH
T ss_conf 899988988789999999985899689999943896122543100146787111244777515--788899906878999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 88999985399589980588468889999998401771894068
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPN 128 (300)
+-+..|.+.+++ +|+=|-|+.+.+..+|.+++++-.+ ++=||
T Consensus 80 ~~~~~~~~~~~~-~ViGTTG~s~~~~~~i~~~a~~ipi-~~apN 121 (122)
T pfam01113 80 ENLELALKHGKP-LVIGTTGFTEEQLAELKEAAKKIPI-VIAPN 121 (122)
T ss_pred HHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHCCCCE-EECCC
T ss_conf 999999967998-8998999999999999998445988-98279
No 16
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=98.12 E-value=8.2e-06 Score=57.40 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=89.4
Q ss_pred CEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 73999888843---779999999862698189976589988687277457753140785035788636886212045678
Q gi|254781050|r 9 TKVLVQGLTGK---AGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300)
Q Consensus 9 t~vivqGitg~---~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300)
-++.|-|++.+ .+-..+++++.- |-+ |-.|||+-.|+++.| .++|.|++|.++. +|+--+|.|+.++++
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~-GY~-ViPVNP~~~~~eiLG----~k~y~sL~dIpe~--IDiVdvFR~~e~~~~ 88 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQK-GYR-VIPVNPKLAGEEILG----EKVYPSLADIPEP--IDIVDVFRRSEAAPE 88 (140)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHC-CCE-EEEECCCCCHHHHCC----CHHHHCHHHCCCC--CCEEEEECCHHHHHH
T ss_conf 66999945799986188999999978-998-995585520577628----3112058758877--757998528656388
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 89999853995899805884688899999984017718940685101
Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
.+.|+++.+.| ++-.-.|+--. +..+.+++.|+.++=--|+.+
T Consensus 89 i~~eal~~~~k-v~W~QlGi~n~---ea~~~~~~aG~~vV~nrCi~~ 131 (140)
T COG1832 89 VAREALEKGAK-VVWLQLGIRNE---EAAEKARDAGLDVVMDRCIMI 131 (140)
T ss_pred HHHHHHHHCCC-EEEEECCCCCH---HHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999961788-59974585798---999999983737898762788
No 17
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.03 E-value=0.00022 Score=48.24 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=92.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 7399988884377999999986269818997658998-------868727745775314078503578863688621204
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG-------STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg-------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
-||.|-|.+||.|+.-.+...+..+-.+++.+-...- |...+-..+++|++++...+. .++|+.|=|.-|.
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~--~~~DV~IDFT~P~ 80 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVK--ADADVLIDFTTPE 80 (266)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCC--CCCCEEEECCCCH
T ss_conf 36999757872789999998528994699998137842234311232144655733206343304--6898899899825
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC-CCEE
Q ss_conf 56788999985399589980588468889999998401771894068-5101
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPN-CPGI 132 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPN-c~Gi 132 (300)
.+.+-+..|.+.+++ +||=|-||..++..++.+.+++-++ ++-|| ++|+
T Consensus 81 ~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~l~~~a~~v~v-v~a~NfSiGv 130 (266)
T COG0289 81 ATLENLEFALEHGKP-LVIGTTGFTEEQLEKLREAAEKVPV-VIAPNFSLGV 130 (266)
T ss_pred HHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCE-EEECCCHHHH
T ss_conf 469999999976998-6997999998999999999853898-9965640799
No 18
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=98.00 E-value=1.5e-05 Score=55.65 Aligned_cols=92 Identities=22% Similarity=0.358 Sum_probs=76.5
Q ss_pred EECCCEEEEECCCCHHHH--HHHHHHHHHCCCCEEEE--ECCCCCCEEECCCCCCCCCCC--CHHHHCCCCCCCEEEEEC
Q ss_conf 717973999888843779--99999986269818997--658998868727745775314--078503578863688621
Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGT--FHTEQAILYCQTQVVGG--IHPKKGSTYWTGGNVNVPVFT--TVAEAKERTAANASVIYV 78 (300)
Q Consensus 5 ~~~~t~vivqGitg~~g~--~~~~~~~~y~gt~ivag--V~Pgkgg~~~~g~~~~iPvy~--sv~ea~~~~~~D~avI~V 78 (300)
.|+.|+|++-|. |..|. .|...+..+ +..|++. +.|.+-|++..+ +|||+ .+.+-+++.++|++++.|
T Consensus 81 ~~~~tnviiVG~-GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 81 QDKTTNVIIVGV-GNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred CCCCEEEEEECC-CHHHHHHHCCCCHHHC-CCEEEEEECCCHHHHCCCCCC----EEEECHHHHHHHHHHCCCCEEEEEC
T ss_conf 774034899905-7088898607423326-935999961787883752488----1455268888898861761899973
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 204567889999853995899805
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviit 102 (300)
|+..+-.++...+++|||.+.=+|
T Consensus 155 Pa~~AQ~vad~Lv~aGVkGIlNFt 178 (211)
T COG2344 155 PAEHAQEVADRLVKAGVKGILNFT 178 (211)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 489899999999983873588426
No 19
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.00 E-value=1.8e-05 Score=55.23 Aligned_cols=92 Identities=24% Similarity=0.339 Sum_probs=75.1
Q ss_pred EECCCEEEEECCCCHHHHHHHHH--HHHHCCCCEEEE--ECCCCCCEEECCCCCCCCCCC--CHHHHCCCCCCCEEEEEC
Q ss_conf 71797399988884377999999--986269818997--658998868727745775314--078503578863688621
Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQ--AILYCQTQVVGG--IHPKKGSTYWTGGNVNVPVFT--TVAEAKERTAANASVIYV 78 (300)
Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~--~~~y~gt~ivag--V~Pgkgg~~~~g~~~~iPvy~--sv~ea~~~~~~D~avI~V 78 (300)
+|+..++++-|. |+-|+--+.+ ...+ |.+|+|- ++|.|-|+++.| +|||+ .+++.+++.++++++|+|
T Consensus 81 ~~~~~~v~lvGa-GnLG~AL~~y~gf~~~-gf~Iva~FD~dp~kiG~~i~g----i~V~~i~~L~~~i~~~~i~iaIiaV 154 (211)
T PRK05472 81 LDKTTNVALVGA-GNLGRALLNYNGFKKR-GFKIVAAFDVDPEKVGTKIGG----IPVYHIDELEEVIKENDIEIAILTV 154 (211)
T ss_pred CCCCCEEEEECC-CHHHHHHHHCCCHHHC-CCEEEEEECCCHHHCCCEECC----EEEECHHHHHHHHHHHCCCEEEEEC
T ss_conf 999750899888-7799999848762318-978999974897885988388----3873499999999981993899955
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 204567889999853995899805
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviit 102 (300)
|+..+-+++...+++|||.+.=+|
T Consensus 155 P~~~AQ~vad~Lv~aGIk~IlNFa 178 (211)
T PRK05472 155 PAEAAQEVADRLVEAGIKGILNFA 178 (211)
T ss_pred CHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 768899999999981983999768
No 20
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.99 E-value=9.1e-05 Score=50.74 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=87.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 7973999888843779999999862698-18997658998868727745775-314078503578863688621204567
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQT-QVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt-~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
+.-||-+.|..+.-+..|........+. .+|+-+.+...--....+..++| +|.+..|..+..++|+.+|.+|+..=.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCHHHH
T ss_conf 93279998987678888899997388746999996499899999999819974529999994599998899969806779
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCC
Q ss_conf 8899998539958998058846888999999840177189-40685
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNC 129 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc 129 (300)
+.++.|+++|...++==.=.....|..+|++.|+++|..+ +|.|.
T Consensus 82 ~~a~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~ 127 (342)
T COG0673 82 ELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNR 127 (342)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEHH
T ss_conf 9999999779969992899899999999999999759949998846
No 21
>pfam06263 consensus
Probab=97.84 E-value=0.0031 Score=40.96 Aligned_cols=230 Identities=21% Similarity=0.283 Sum_probs=127.4
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC----CHHHHHHHHHHHHHC-CCCEEEEECCCCCHH---------
Q ss_conf 998868727745775314078503578863688621----204567889999853-995899805884688---------
Q gi|254781050|r 43 KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYV----PPSGAGDAIIESIEA-EIPLIVCITEGIPVL--------- 108 (300)
Q Consensus 43 gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V----P~~~v~dai~Ea~~a-gik~iviiteGip~~--------- 108 (300)
|-||....-++-++-.-+.+ ++.++ +.++-+|.+ |++.|.+-+++.+.+ +-+.++++-.+-|+.
T Consensus 223 GtGGRDLs~eVGGisml~al-~aL~~-Dp~T~vIvlISKPPa~eV~~kVl~~~~~~~KPVV~~FLG~~~~~~~~~nv~~a 300 (514)
T pfam06263 223 GTGGRDLSAEVGGIMMLDAL-DALEQ-DEETKVIVLISKPPAPEVAEKILELLKASGKPVVVLFLGGDPTERREGNVTFA 300 (514)
T ss_pred CCCCCHHHHHHCCHHHHHHH-HHHHC-CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEC
T ss_conf 36774025775346899999-99855-99832999965899789999999999842998899984799854566882523
Q ss_pred ----HH-HHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCE-EEEEECCCHHHHHHHHHHHCCC-------
Q ss_conf ----89-9999984017718940685101355510002001123577867-9998054147899999997199-------
Q gi|254781050|r 109 ----DM-VRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSV-GILSRSGTLTYEAVFQTSQEGL------- 175 (300)
Q Consensus 109 ----d~-~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~V-givSqSG~l~~e~~~~~~~~g~------- 175 (300)
+. +.-+.+++.....- -.+...-.+ ..-..| ..+.| |+.| -|||++|.+..+++..-
T Consensus 301 ~tL~eAA~~Av~l~~~~~~~~--~~~~~~~~~---~~~~~~----~~~~irGLys-GGTLa~EA~~l~~~~l~~~~sn~~ 370 (514)
T pfam06263 301 TTLEDAAQKAVALSNGQEAKA--NYNPTGADL---TAQLPP----EQKYIRGLYS-GGTLADEAAMLLSEALGDVYSNIP 370 (514)
T ss_pred CCHHHHHHHHHHHHCCCCCCC--CCCCCCCCC---CCCCCC----CCCEEEEEEC-CHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 678999999999716876754--456543321---235686----6874899954-715999999999986087667888
Q ss_pred -------------CEEEEEECCCCC--------CCCCC-HHHHHHHHHCCCCCCEEEEEEECC-CHHH---HHHHHHHHH
Q ss_conf -------------516764055674--------46789-999999997399872889997058-7248---999999998
Q gi|254781050|r 176 -------------GQSTAVGIGGDP--------VKGTE-FIDVLELFLADEATESIVMVGEIG-GSAE---EEAAQFLKD 229 (300)
Q Consensus 176 -------------G~S~~VsiG~D~--------~~G~~-~~d~L~~~~~Dp~T~~Ivl~gEiG-G~~E---~~aa~fi~~ 229 (300)
.-.++|-+|-|. |+.-+ -.+.|.-..+||+|.+|+|=..+| |..+ .+.+..|++
T Consensus 371 ~~g~~~L~d~~~s~gH~iiDlGDD~fT~GRPHPMIDPs~R~e~i~~~a~Dp~v~VILlDvVLGyGah~DPag~L~paI~~ 450 (514)
T pfam06263 371 LEGEMLLANIDKSQGHTIIDLGDDMFTVGRPHPMIDPTLRNERILQEAADPEVAVILLDVVLGYGAHADPAGELLPAIEE 450 (514)
T ss_pred CCCHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 87300257633358956886677434578997886847899999997149972289998532268999848999999999
Q ss_pred HHH----CCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
Q ss_conf 642----2675526899843015765532200112248888999999999988975788989999999999843
Q gi|254781050|r 230 EAK----RGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 230 ~~~----~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300)
++. ..+.-+||+++.|.-..+- ..+...+.|++||+.+++|-.+-..+-.++++.
T Consensus 451 a~~~a~~~gr~l~vvatV~GT~~DPQ---------------~~~~Q~~~L~~AGv~V~~SNa~A~~~A~~l~~~ 509 (514)
T pfam06263 451 ARAIAKADGRELAVIATVCGTEADPQ---------------GRSEQIKILEEAGVLVVSSNAQAVRLAKKIAKL 509 (514)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCC---------------CHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHH
T ss_conf 99888753897089999738898974---------------899999999978959975859999999999987
No 22
>PRK11579 putative oxidoreductase; Provisional
Probab=97.81 E-value=0.00052 Score=45.89 Aligned_cols=113 Identities=16% Similarity=0.107 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCC--CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 7973999888843779-999999862698189976589--9886872774577531407850357886368862120456
Q gi|254781050|r 7 KNTKVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPK--KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 7 ~~t~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pg--kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
+.-|+-+.|. |..|. +|.+......+-.+||-..+. |--..+. .+|+|.+..|..+..++|+.+|..|...=
T Consensus 3 ~~irvgiiG~-G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~~a~~~----~~~~~~~~~~ll~~~~id~V~i~tp~~~H 77 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDETKVKADWP----TVTVVSEPKHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCC----CCCEECCHHHHHCCCCCCEEEECCCCHHH
T ss_conf 8875999936-299999999999629991999997989999950258----99538999999459999999997996789
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 78899998539958998058846888999999840177189
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300)
.+.++.|+++|...++==.=.....+..+|.+.|++.|..+
T Consensus 78 ~~~~~~al~aGkhv~~EKP~a~~~~~a~~l~~~a~~~g~~l 118 (346)
T PRK11579 78 FPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVL 118 (346)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999879948953876787999999999998729679
No 23
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=97.76 E-value=0.0011 Score=43.87 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=96.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEEC-C--CCCCE----EECCCCCCCCCCCCHHHH--C--CCCCCCEEEE
Q ss_conf 7399988884377999999986-26981899765-8--99886----872774577531407850--3--5788636886
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAIL-YCQTQVVGGIH-P--KKGST----YWTGGNVNVPVFTTVAEA--K--ERTAANASVI 76 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~-y~gt~ivagV~-P--gkgg~----~~~g~~~~iPvy~sv~ea--~--~~~~~D~avI 76 (300)
=||.|.|..||-|+.--+.... |.+-.+|+-+- | .+-|+ ..+-..+++||-+...-. . .+..+|+-|=
T Consensus 2 ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVliD 81 (281)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLID 81 (281)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 83588478873469999999974898167888861688856654202422554784100057889998740236864787
Q ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECC
Q ss_conf 2120456788999985399589980588468889999998401771894-068
Q gi|254781050|r 77 YVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPN 128 (300)
Q Consensus 77 ~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii-GPN 128 (300)
|.-|..+.+-+.=|+++|++ .|+=|=||.+.+..+|.+.+.+.++.+| =||
T Consensus 82 FT~p~g~~~~~~~a~~~Gv~-~V~GTTGf~e~~~~~~~~~a~~~~~~~v~A~N 133 (281)
T TIGR00036 82 FTTPEGVVENVKIALENGVR-LVVGTTGFSEEDLQELRDLAEKKGVAAVIAPN 133 (281)
T ss_pred CCCCHHHHHHHHHHHHCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 38605678999999966885-57716689989999999999864997898465
No 24
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.67 E-value=0.0014 Score=43.09 Aligned_cols=165 Identities=18% Similarity=0.282 Sum_probs=111.8
Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCCC-----HHCCEE--------------------C----------CCCCCCCCEEE
Q ss_conf 999998401771894068510135551-----000200--------------------1----------12357786799
Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPDS-----CKIGIM--------------------P----------GSIFRKGSVGI 155 (300)
Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~~-----~~lgi~--------------------p----------~~~~~pG~Vgi 155 (300)
..|.+.-.++...++==|=+.+-.-++ +|+.+- | +++--.|+||+
T Consensus 182 ~~Ly~~F~~~Da~LvEINPLv~t~dg~~ialDaKv~iDDNAlfR~~~i~~~rd~~~ed~~E~~A~~~~lnyv~LdG~IG~ 261 (388)
T PRK00696 182 MGLYKAFVEKDASLVEINPLVVTKDGDLLALDAKITFDDNALFRHPDIAALRDPSQEDPREAEASKFDLNYVALDGNIGC 261 (388)
T ss_pred HHHHHHHHHCCCCEEECCCEEECCCCCEEEEEEEEECCCCHHHCCHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCEEEE
T ss_conf 99999999659742561242686899789988898416752331866673268764897899998869735974576999
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH-HHHHH-HHHHHHHC
Q ss_conf 98054147899999997199516764055674467899999999973998728899970587248-99999-99986422
Q gi|254781050|r 156 LSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE-EEAAQ-FLKDEAKR 233 (300)
Q Consensus 156 vSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E-~~aa~-fi~~~~~~ 233 (300)
+.--.+|+...++.+...|---.-|.-+||.+.. ......|+.+..||+.|+|++=- .||... .+.|+ .+++.+..
T Consensus 262 mvNGAGLaMaTmD~i~~~Gg~pANFLDvGG~a~~-e~v~~a~~ii~~d~~vk~IliNI-fGGI~rcd~vA~giv~A~~~~ 339 (388)
T PRK00696 262 MVNGAGLAMATMDIIKLHGGEPANFLDVGGGATK-ERVTEAFKIILSDPNVKAILVNI-FGGIMRCDVIAEGIVAAVKEV 339 (388)
T ss_pred EECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHHHHCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHC
T ss_conf 9747644413589999759985425634899889-99999999986699950999993-688243999999999999964
Q ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHH
Q ss_conf 67552689984301576553220011224888899999999998897--57889899999999998
Q gi|254781050|r 234 GRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELL 297 (300)
Q Consensus 234 ~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l 297 (300)
..++|||+-..|..+..|++ .|+++|+ +.+++++|-.....++.
T Consensus 340 ~~~~PiVvRl~Gtn~e~g~~--------------------iL~~sgl~i~~~~~l~eAa~~aV~~~ 385 (388)
T PRK00696 340 GVKVPLVVRLEGTNVELGKK--------------------ILAESGLPIIAADSLMDAAQKVVAAV 385 (388)
T ss_pred CCCCCEEEEECCCCHHHHHH--------------------HHHHCCCCEEEECCHHHHHHHHHHHH
T ss_conf 99987899906788799999--------------------99978997487078999999999973
No 25
>PRK10206 putative dehydrogenase; Provisional
Probab=97.59 E-value=0.0012 Score=43.49 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=81.4
Q ss_pred EEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCC-CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 3999888843779-99999986269818997658998-868727745775314078503578863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKG-STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkg-g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
||-+-|. |..|. ||.+..+.-.+...++.|..... -+......-++++|++..|..+..++|+-+|..|...=.+.+
T Consensus 4 rvaiiG~-G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~id~V~i~tP~~~H~~~a 82 (345)
T PRK10206 4 NCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 82 (345)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCCHHHHHHH
T ss_conf 7999926-499999989999638995799999788761888887769981228999995499999999879957899999
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 99985399589980588468889999998401771894
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
..|+++|...++==.=.....+..+|.+.|+++|..+.
T Consensus 83 ~~al~aGkhV~~EKP~~~~~~ea~~l~~~a~~~g~~l~ 120 (345)
T PRK10206 83 KRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99997899289803664989999999999997099799
No 26
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.58 E-value=0.0024 Score=41.63 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=116.3
Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCC-C-----HHCCEE-------CC-----------------------CCCCCCCEE
Q ss_conf 99999840177189406851013555-1-----000200-------11-----------------------235778679
Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPD-S-----CKIGIM-------PG-----------------------SIFRKGSVG 154 (300)
Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~-~-----~~lgi~-------p~-----------------------~~~~pG~Vg 154 (300)
.+|.+.-.++...++==|-+.+..-+ . .++++- |. ++--.|+||
T Consensus 180 ~~ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG 259 (387)
T COG0045 180 KKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDLAELRDESEEDPREAEASGYGLNYVELDGNIG 259 (387)
T ss_pred HHHHHHHHHCCCCEEEEECCEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCEEEECCCEE
T ss_conf 99999999758767875250881799808997645403676434683445553233358557876127875188638378
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH-HHHHHH-HHHHHH
Q ss_conf 998054147899999997199516764055674467899999999973998728899970587248-999999-998642
Q gi|254781050|r 155 ILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE-EEAAQF-LKDEAK 232 (300)
Q Consensus 155 ivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E-~~aa~f-i~~~~~ 232 (300)
++....+|+...++.+...|---.-|.-+||.+-.. .....++....||++|+|.+-. .||... ...|+- +++.+.
T Consensus 260 ~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e-~v~~a~~~il~d~~vk~IfVNI-fGGI~rcD~vA~GIi~Al~e 337 (387)
T COG0045 260 CIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAE-RVKEAFKLILSDPNVKAIFVNI-FGGITRCDEVAEGIIAALKE 337 (387)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHH-HHHHHHHHHHCCCCCCEEEEEE-CCCCCCCHHHHHHHHHHHHH
T ss_conf 996272699999999998089974144148999988-9999999984599854899997-16867508999999999985
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CEECCCHHHHHHHHHHHHH
Q ss_conf 26755268998430157655322001122488889999999999889--7578898999999999984
Q gi|254781050|r 233 RGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAG--ICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 233 ~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aG--v~v~~s~~el~~~l~~~l~ 298 (300)
...++|+|+=..|..+..||+ .|+++| +..+++..|..+...++-+
T Consensus 338 ~~~~vPlVVRL~GtN~e~Gk~--------------------iL~esg~~i~~~~~l~~aa~k~v~~~~ 385 (387)
T COG0045 338 VGVNVPLVVRLEGTNVEEGKR--------------------ILAESGLNIIAADDLDEAAEKAVELAK 385 (387)
T ss_pred CCCCCCEEEECCCCCHHHHHH--------------------HHHHCCCCEEECCCHHHHHHHHHHHHH
T ss_conf 298888899867887899999--------------------999739940762468899999999851
No 27
>PRK06091 membrane protein FdrA; Validated
Probab=97.41 E-value=0.011 Score=37.44 Aligned_cols=224 Identities=16% Similarity=0.217 Sum_probs=121.0
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC----CHHHHHHHHHHHHHC-CCCEEEEECCCCCHH--H-----H
Q ss_conf 998868727745775314078503578863688621----204567889999853-995899805884688--8-----9
Q gi|254781050|r 43 KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYV----PPSGAGDAIIESIEA-EIPLIVCITEGIPVL--D-----M 110 (300)
Q Consensus 43 gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V----P~~~v~dai~Ea~~a-gik~iviiteGip~~--d-----~ 110 (300)
|-||....-++-++-.-+.+ ++.++ +.++-+|.+ |++.|.+-+++.+.+ +-+.++++-.+-|+. + .
T Consensus 225 GtGGRDLs~eVGGis~l~al-~aL~~-Dp~T~vIvlISKPPa~eV~~kVl~~~~~~~KPVV~~FLG~~p~~~~e~~~~~a 302 (555)
T PRK06091 225 GLGGRDLSREVGGISALTAL-EMLSA-DEKSEVLAFVSKPPAEAVRLKIINAMKATGKPVVALFLGYTPAVAREENVWFA 302 (555)
T ss_pred CCCCCHHHHHHCCHHHHHHH-HHHHC-CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEHH
T ss_conf 37774025675337899999-99855-99832999965899789999999999842998899972799765676764124
Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCE-EEEEECCCHHHHHHHHHHHCCCC-------------
Q ss_conf 9999984017718940685101355510002001123577867-99980541478999999971995-------------
Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSV-GILSRSGTLTYEAVFQTSQEGLG------------- 176 (300)
Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~V-givSqSG~l~~e~~~~~~~~g~G------------- 176 (300)
..+.+.|+.. +.+.+ .-. . ....+. ...+.| |+.| -|||++|.+..+++. +|
T Consensus 303 ~tL~eaA~~A-v~l~~-----~~~--~--~~~~~~--~~~~~irGLys-GGTLa~EA~~ll~~~-l~~~~~~~~~~g~~l 368 (555)
T PRK06091 303 STLDEAARLA-CLLSR-----VTA--R--RNAIAP--VSSGFICGLYT-GGTLAAEAAGLLAGH-LGVEADDEHHHGMML 368 (555)
T ss_pred HHHHHHHHHH-HHHCC-----CCH--H--HCCCCC--CCCCEEEEEEC-CCHHHHHHHHHHHHH-HCCCCCCCCCCCCHH
T ss_conf 4299999998-74405-----520--1--102568--77773799953-712999999999987-099888533544111
Q ss_pred ---EEEEEECCCCC--------CCCCC-HHHHHHHHHCCCCCCEEEEEEECC-CHHH---HHHHHHHHHH---HHCCCCC
Q ss_conf ---16764055674--------46789-999999997399872889997058-7248---9999999986---4226755
Q gi|254781050|r 177 ---QSTAVGIGGDP--------VKGTE-FIDVLELFLADEATESIVMVGEIG-GSAE---EEAAQFLKDE---AKRGRKK 237 (300)
Q Consensus 177 ---~S~~VsiG~D~--------~~G~~-~~d~L~~~~~Dp~T~~Ivl~gEiG-G~~E---~~aa~fi~~~---~~~~~~K 237 (300)
-.++|-+|-|. |+.-+ -.+.|.-..+||+|.+|+|=..+| |..| .+.+..|+++ +...+.-
T Consensus 369 ~s~gH~iiDlGDD~fT~GRPHPMIDPs~R~e~i~~~a~Dp~v~VILlDvVLGyGah~DPag~L~paI~~a~~a~~~gr~l 448 (555)
T PRK06091 369 DADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPL 448 (555)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 05895698657742357898888682779999999734997228999875326899984899999999999755338963
Q ss_pred CEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 268998430157655322001122488889999999999889757889899999999998
Q gi|254781050|r 238 PIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELL 297 (300)
Q Consensus 238 PVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l 297 (300)
+||+++.|....+- ..+...+.|++||+.+++|-.+-..+-.+++
T Consensus 449 ~vVa~V~GT~~DPQ---------------~~~~Q~~~L~~AGv~V~~SNa~A~~~A~~l~ 493 (555)
T PRK06091 449 YAIATVTGTERDPQ---------------CRSQQIATLEDAGIAVVSSLPEATLLAAALI 493 (555)
T ss_pred EEEEEEECCCCCCC---------------CHHHHHHHHHHCCEEEECCCHHHHHHHHHHH
T ss_conf 89999807888973---------------8999999999689599757399999999970
No 28
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.18 E-value=0.0037 Score=40.44 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=91.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 399988884377999999986269818997658998868727-7457753140785035788636886212045678899
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG-GNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
+|.|.|- |.||.-|+.+|.+ +|-||+-|+.+++- .|.- +..+.-|| |++||++. +|+.++.+|-..-++...
T Consensus 20 ~iaIIGY-GsQG~ahalNlRD-SGlnViiGlr~g~~--s~~kA~~dGf~V~-~v~ea~k~--ADvim~L~PDe~q~~vy~ 92 (338)
T COG0059 20 KVAIIGY-GSQGHAQALNLRD-SGLNVIIGLRKGSS--SWKKAKEDGFKVY-TVEEAAKR--ADVVMILLPDEQQKEVYE 92 (338)
T ss_pred EEEEEEC-CHHHHHHHHHHHH-CCCCEEEEECCCCH--HHHHHHHCCCEEE-CHHHHHHC--CCEEEEECCHHHHHHHHH
T ss_conf 6999902-7087888742242-48747998568872--4899996697751-39998522--799998186546789999
Q ss_pred HHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC
Q ss_conf 99853995--899805884688899999984017718940685101355510002
Q gi|254781050|r 89 ESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG 141 (300)
Q Consensus 89 Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg 141 (300)
+.++..++ .+..++-||.+|- .+...-+.-.+.++-|-|||-..-...+-|
T Consensus 93 ~~I~p~Lk~G~aL~FaHGfNihf--~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G 145 (338)
T COG0059 93 KEIAPNLKEGAALGFAHGFNIHF--GLIVPPKDVDVIMVAPKGPGHLVRREYKEG 145 (338)
T ss_pred HHHHHHHCCCCEEEECCCCCEEC--CCCCCCCCCCEEEECCCCCCHHHHHHHHCC
T ss_conf 87434522786677626553113--303377667189983899967899998736
No 29
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=97.11 E-value=0.014 Score=36.76 Aligned_cols=247 Identities=21% Similarity=0.244 Sum_probs=154.2
Q ss_pred CCHHHHH----HHHHHHHHC----CCCEEEEECCC-CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 8437799----999998626----98189976589-98868727745775314078503578863688621204567889
Q gi|254781050|r 17 TGKAGTF----HTEQAILYC----QTQVVGGIHPK-KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 17 tg~~g~~----~~~~~~~y~----gt~ivagV~Pg-kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
+|.+|.. -...+.+|+ |+|+.+-+||. |=.-+|.. ..+++ =+.|+|.=...+....+
T Consensus 105 ~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~lNAtFA~------------~~p~~--G~Iaf~SQSGAl~~a~L 170 (457)
T TIGR02717 105 VGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKLNATFAP------------TMPKK--GGIAFISQSGALLTALL 170 (457)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHCCCC------------CCCCC--CCEEEEEHHHHHHHHHH
T ss_conf 31678999999999997678817767362258144021100135------------78898--87778971258999999
Q ss_pred HHHHHCCCCEEEEEC-----------------------------CCCCH--HHHHHHHHHHHCCCCEEE--ECCCCEEEC
Q ss_conf 999853995899805-----------------------------88468--889999998401771894--068510135
Q gi|254781050|r 88 IESIEAEIPLIVCIT-----------------------------EGIPV--LDMVRVKARLEKSSSRLI--GPNCPGILT 134 (300)
Q Consensus 88 ~Ea~~agik~iviit-----------------------------eGip~--~d~~~l~~~A~~~g~rii--GPNc~Gii~ 134 (300)
..+...+|..=-+|+ |||.. +=++..+++.|++-+-++ |=..-|--.
T Consensus 171 dwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~DG~~Fl~~A~~~s~~KPiv~lKsG~s~~GakA 250 (457)
T TIGR02717 171 DWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAKEISKKKPIVVLKSGTSEAGAKA 250 (457)
T ss_pred HHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 99987278134778267411116577888985398940899971787041689999888630598899936888345676
Q ss_pred C--------CC--------HHCCEECC---------------CCCC-CCC-EEEEEECCCHHHHHHHHHHHCCCCEEE--
Q ss_conf 5--------51--------00020011---------------2357-786-799980541478999999971995167--
Q gi|254781050|r 135 P--------DS--------CKIGIMPG---------------SIFR-KGS-VGILSRSGTLTYEAVFQTSQEGLGQST-- 179 (300)
Q Consensus 135 p--------~~--------~~lgi~p~---------------~~~~-pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~-- 179 (300)
. |. -+.|++-. ..+. +|+ |.+||-||+.+.-..|++.+.|+-.+.
T Consensus 251 A~SHTGaLAGs~~~y~aaf~q~G~iRa~~~~ELfd~A~~L~~~~~~~~g~~~~IiTN~GG~Gvia~D~~~~~Gl~L~~~~ 330 (457)
T TIGR02717 251 ASSHTGALAGSDEAYDAAFKQAGVIRADSIEELFDLARLLSNQPLPPKGNRVAIITNAGGPGVIATDACEEVGLELAELS 330 (457)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 52102313366899998743014388701778899999983589899887699997896167787656777497455585
Q ss_pred -------------EEECCC--C-----CCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHH-HHHHHHHHHHHHHCCCCC
Q ss_conf -------------640556--7-----4467899999999973998728899970-58724-899999999864226755
Q gi|254781050|r 180 -------------AVGIGG--D-----PVKGTEFIDVLELFLADEATESIVMVGE-IGGSA-EEEAAQFLKDEAKRGRKK 237 (300)
Q Consensus 180 -------------~VsiG~--D-----~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~-E~~aa~fi~~~~~~~~~K 237 (300)
.=|+.| | +... .|.+.|+-..+||+.+.++++.- ---.+ -+++++-+-........|
T Consensus 331 ~~t~~~L~~~LP~~as~~NPVD~~GsDA~~~-~Y~~~l~~v~eD~nVd~~~vv~~~~a~~~~~~~va~~~~~~~~~~~~k 409 (457)
T TIGR02717 331 EKTKEKLRNILPPEASIKNPVDVLGSDATAE-RYAKALKIVAEDENVDGVVVVLTPTAMTDKPEEVAKGIIEVAKKSNEK 409 (457)
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEECCCCHH-HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999974761147787512552278989-999999998348888889996425302467999999887543036742
Q ss_pred ----CEEEEE-EEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf ----268998-4301576553220011224888899999999998897578898999999999984
Q gi|254781050|r 238 ----PIVGFV-AGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 238 ----PVva~~-~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
|||... .|.+.++ +. ..|+++|++.=.+|+.=.+.|..++.
T Consensus 410 ~~~Kpvv~~~~gG~~~~~--------a~------------~~L~~~giP~Y~~Pe~AV~Al~~l~~ 455 (457)
T TIGR02717 410 KRDKPVVAGFVGGKSVKE--------AK------------RILEENGIPNYTFPERAVKALSALYR 455 (457)
T ss_pred CCCCCEEEEEECCCCCCH--------HH------------HHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 124744899846732201--------56------------62231588764796889999998613
No 30
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=96.76 E-value=0.0059 Score=39.17 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=49.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHHHH
Q ss_conf 679998054147899999997199516764055674467899999999973998728899970-587248--99999999
Q gi|254781050|r 152 SVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQFLK 228 (300)
Q Consensus 152 ~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~fi~ 228 (300)
.|++|.-+|++.+- -+.|- .+|.| ++.+.|+-..+||+.|+|+|... +||..- ++.++.|+
T Consensus 1 ~iaVi~~~G~I~~~---------~~~~~--~~~~~-----~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~ 64 (211)
T cd07019 1 SIGVVFANGAIVDG---------EETQG--NVGGD-----TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELA 64 (211)
T ss_pred CEEEEEEEEEECCC---------CCCCC--CCCHH-----HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98999988788379---------88788--75899-----9999999995289973899997696976899999999999
Q ss_pred HHHHCCCCCCEEEEEEEECCC
Q ss_conf 864226755268998430157
Q gi|254781050|r 229 DEAKRGRKKPIVGFVAGKTAP 249 (300)
Q Consensus 229 ~~~~~~~~KPVva~~~GrtAp 249 (300)
..+ ...|||++|+.+..|.
T Consensus 65 ~~~--~~~KPVva~~~~~aaS 83 (211)
T cd07019 65 AAR--AAGKPVVVSAGGAAAS 83 (211)
T ss_pred HHH--HCCCCEEEEECCCCCH
T ss_conf 986--4699799997784434
No 31
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.75 E-value=0.0053 Score=39.47 Aligned_cols=120 Identities=23% Similarity=0.312 Sum_probs=88.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 97399988884377999999986269818997658998868727-74577531407850357886368862120456788
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG-GNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
+-+|.|.|. |.||.-|+.++.+ +|-||+-|..++ +..|.- ...+.-|+ ++.||.+. +|+-.+.+|-..-.+.
T Consensus 17 ~k~iaViGY-GsQG~AhAlNLrD-SG~~V~vglr~g--s~S~~kA~~dGf~v~-~~~eA~~~--aDii~~L~PD~~q~~v 89 (336)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRD-SGVDVVVGLREG--SKSWKKAEADGFEVL-TVAEAAKW--ADVIMILLPDELQAEV 89 (336)
T ss_pred CCEEEEECC-CCHHHHHHHHHHH-CCCCEEEEECCC--CCCHHHHHHCCCEEC-CHHHHHHH--CCEEEEECCHHHHHHH
T ss_conf 997999752-7076898855374-499779997999--803999998799436-79999974--6866542875778999
Q ss_pred HHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCC
Q ss_conf 9999853995--8998058846888999999840177189406851013555
Q gi|254781050|r 87 IIESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPD 136 (300)
Q Consensus 87 i~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~ 136 (300)
-.+.+...++ ..+.++-||.+|- ..+.--..-++.++-|-+||-..-.
T Consensus 90 y~~~I~p~lk~G~~L~FaHGFnIhy--~~I~pp~~vDVimVAPKgpG~~VR~ 139 (336)
T PRK05479 90 YKEEIEPNLKEGAALAFAHGFNIHF--GQIVPPADVDVIMVAPKGPGHLVRR 139 (336)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHCC--CEEEECCCCCEEEECCCCCCHHHHH
T ss_conf 9999985458997688614430005--6044458976799888999768999
No 32
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=96.63 E-value=0.012 Score=37.14 Aligned_cols=95 Identities=19% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCC-------C-CC
Q ss_conf 74467899999999973998728899970-58724899999999864226--75526899843015765-------5-32
Q gi|254781050|r 186 DPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRG--RKKPIVGFVAGKTAPPG-------R-TM 254 (300)
Q Consensus 186 D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~--~~KPVva~~~GrtAp~g-------~-~~ 254 (300)
|-+.-.++...|+-..+||..++|+|-.+ +||.-- .-.|..+...+.. .+||||+|.++-.|..| . =|
T Consensus 24 Dg~~~~~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~-~S~Eiy~~l~~~~k~~kkPVv~~~g~~aaSGGYYia~aa~~I~ 102 (224)
T TIGR00706 24 DGVSPEDVLKKIKRIKDDKSIKALVLRIDSPGGTVV-ASEEIYEKLKKLKKEAKKPVVASMGGVAASGGYYIAMAADEIV 102 (224)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf 899756799998877408970069998637999752-2689999998634530885899836832267999981388246
Q ss_pred CEEEEECCCCCCC---HHHHHHHHHHCCCEE
Q ss_conf 2001122488889---999999999889757
Q gi|254781050|r 255 GHAGAVISGGKGG---AEDKINAMKEAGICI 282 (300)
Q Consensus 255 gHaGAi~~~~~g~---a~~k~~al~~aGv~v 282 (300)
.|-+|+++ +-|- -......+++-||..
T Consensus 103 A~~~t~tG-SIGVIl~~~n~~~L~~k~GI~~ 132 (224)
T TIGR00706 103 ANPGTITG-SIGVILQGANVEKLLEKLGIEF 132 (224)
T ss_pred ECCCCCEE-CHHHHHHHHHHHHHHHHCCCEE
T ss_conf 34774202-0375520357999998649156
No 33
>PRK10949 protease 4; Provisional
Probab=96.46 E-value=0.012 Score=37.18 Aligned_cols=114 Identities=24% Similarity=0.382 Sum_probs=70.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHH
Q ss_conf 778679998054147899999997199516764055674467899999999973998728899970-5872489999999
Q gi|254781050|r 149 RKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFL 227 (300)
Q Consensus 149 ~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi 227 (300)
....|++|--+|++.. |-+.-=.+|+| ++++.|+-..+|++.|+|||-.- +||+.- |.|.|
T Consensus 324 ~~~~IAVI~a~G~Iv~-----------G~~~~g~ig~d-----t~~~~lr~a~~D~~VKAvVLRVnSPGGSa~--ASE~I 385 (618)
T PRK10949 324 TGGQIAVIFANGAIMD-----------GEETPGNVGGD-----TTAAQIRDARLDPKVKAIVLRVNSPGGSVT--ASEVI 385 (618)
T ss_pred CCCEEEEEEEEEEEEC-----------CCCCCCCCCHH-----HHHHHHHHHHCCCCCEEEEEEEECCCCCHH--HHHHH
T ss_conf 7983899996876854-----------88878866558-----999999997308672289999858998667--89999
Q ss_pred HHHHH--CCCCCCEEEEEEEECCCCCC--------CCCE----EEEECCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 98642--26755268998430157655--------3220----01122488889999999999889757
Q gi|254781050|r 228 KDEAK--RGRKKPIVGFVAGKTAPPGR--------TMGH----AGAVISGGKGGAEDKINAMKEAGICI 282 (300)
Q Consensus 228 ~~~~~--~~~~KPVva~~~GrtAp~g~--------~~gH----aGAi~~~~~g~a~~k~~al~~aGv~v 282 (300)
+.... ....||||+-.++.-|..|= =+-+ ||+| |=-+..-.....|++.||..
T Consensus 386 ~~el~~lk~~gKPVVvSMG~vAASGGYwIa~~Ad~I~A~p~TITGSI--GVfg~~p~~~~~l~~lGI~~ 452 (618)
T PRK10949 386 RAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSI--GIFGVINTVENSLDSIGVHT 452 (618)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEC--EEEEEHHHHHHHHHHCCCEE
T ss_conf 99999998449979999701015662588516876998898678864--04776104999999649524
No 34
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.37 E-value=0.012 Score=37.26 Aligned_cols=122 Identities=18% Similarity=0.253 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 79739998888437799999998626981899765899886872774577531407850357886368862120456788
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
|+-+|.|.|. |.||.-|+.++.+ +|-+|+-|..||+.-.... ..+.-|+ ++.||.+. +|+-.+.+|-..-.+.
T Consensus 15 k~k~iaVIGY-GsQG~AhAlNLrD-SG~~V~vglr~g~s~~~A~--~~Gf~v~-~~~eA~~~--aDvi~~L~pD~~q~~v 87 (335)
T PRK13403 15 QGKTVAVIGY-GSQGHAQAQNLRD-SGVEVVVGVRPGKSFEVAK--ADGFEVM-SVSEAVRT--AQVVQMLLPDEQQAHV 87 (335)
T ss_pred CCCEEEEEEE-CCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHH--HCCCEEC-CHHHHHHH--CCEEEEECCHHHHHHH
T ss_conf 7997999756-7076898856476-3997799979985699999--8799316-79999985--7978750885879999
Q ss_pred HHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCC
Q ss_conf 9999853995--89980588468889999998401771894068510135551
Q gi|254781050|r 87 IIESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDS 137 (300)
Q Consensus 87 i~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~ 137 (300)
-.+-+...++ ....++-||.+|- ..+.--+.-++.++-|-+||-..-..
T Consensus 88 y~~~i~p~lk~G~~L~FaHGfnI~~--~~I~pp~~vdV~mvAPKgpG~~VR~~ 138 (335)
T PRK13403 88 YKAEVEENLREGQMLLFSHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRV 138 (335)
T ss_pred HHHHHCCCCCCCCEEEEECCCHHHC--CEECCCCCCCEEEECCCCCCHHHHHH
T ss_conf 9744255368997237614431122--42457899867998999996579999
No 35
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=96.16 E-value=0.017 Score=36.26 Aligned_cols=55 Identities=31% Similarity=0.400 Sum_probs=40.5
Q ss_pred CHHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 99999999973998728899970-587248--99999999864226755268998430157
Q gi|254781050|r 192 EFIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQFLKDEAKRGRKKPIVGFVAGKTAP 249 (300)
Q Consensus 192 ~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~fi~~~~~~~~~KPVva~~~GrtAp 249 (300)
++.+.|+-..+||+.|+|+|... +||... ++.++.|+.. ..+|||++|..+..|.
T Consensus 29 ~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~---~~~KPVva~~~~~~aS 86 (214)
T cd07022 29 GIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAA---RAGKPIVAFVNGLAAS 86 (214)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCHHH
T ss_conf 999999999509997589999979897689999999999986---0899899998881156
No 36
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=95.96 E-value=0.016 Score=36.41 Aligned_cols=120 Identities=22% Similarity=0.320 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 797399988884377999999986269818997658998868727-7457753140785035788636886212045678
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG-GNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300)
|+-+|.|.|. |.||.-|+.++.+- |-||+-|..++. ..|.- +..+.-| -++.||.+. +|+-.+.+|-..-.+
T Consensus 3 k~k~iaViGY-GsQG~AhAlNLrDS-G~~V~vglr~~s--~S~~kA~~dGf~v-~~~~eA~~~--aDiim~L~PD~~q~~ 75 (165)
T pfam07991 3 KGKKIAVIGY-GSQGHAHALNLRDS-GVNVIVGLRPGS--KSWEKAKKDGFEV-YTVAEAVKK--ADVVMILLPDEVQAE 75 (165)
T ss_pred CCCEEEEEEE-CCHHHHHHHHHHHC-CCCEEEEECCCC--HHHHHHHHCCCCC-CCHHHHHHH--CCEEEEECCCHHHHH
T ss_conf 7998999934-61648887230534-997899978998--6799999789700-489999865--789998379777899
Q ss_pred HHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC
Q ss_conf 89999853995--899805884688899999984017718940685101355
Q gi|254781050|r 86 AIIESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300)
Q Consensus 86 ai~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300)
.-.+-+...++ ....++.||.++- ..+.--+.-++.++=|-++|-..-
T Consensus 76 iy~~~I~p~lk~G~~L~FaHGFnI~y--~~I~pp~dvdVimVAPKgPG~~VR 125 (165)
T pfam07991 76 VYEKEIAPNLKEGAALAFAHGFNIHF--GQIKPPKDVDVIMVAPKGPGHLVR 125 (165)
T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEE--CCEEECCCCCEEEECCCCCCHHHH
T ss_conf 99998986578997799715757774--107646998689988899974799
No 37
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=95.76 E-value=0.13 Score=30.56 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=75.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCC--------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH
Q ss_conf 99988884377999999986269--81899765899--------886872774577531407850357886368862120
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQ--TQVVGGIHPKK--------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~g--t~ivagV~Pgk--------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300)
|+|-|. |..|+.-......... .=+|+..+..+ .+..+....+++--++.+.+.++. .|+.|-.+|+
T Consensus 1 IlvlGa-G~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~diVv~~~p~ 77 (384)
T pfam03435 1 VLIIGA-GGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLKE--GDLVINLAPP 77 (384)
T ss_pred CEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHC--CCEEEECCCH
T ss_conf 989897-7879999999972899886999989889989877523698538999577899999998712--8999999843
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 456788999985399589980588468889999998401771894
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.+-...+.-|+++|+..+- ++ +...+++++.+.|++.|+.++
T Consensus 78 ~~~~~i~~~c~~~g~~yvd-~s--~~~~~~~~l~~~a~~ag~~~~ 119 (384)
T pfam03435 78 FLSLTVLKACIETGVHYVD-TS--YLREAQLALHEKAKEAGVTAV 119 (384)
T ss_pred HHCHHHHHHHHHCCCCEEE-CC--CCHHHHHHHHHHHHHCCCEEE
T ss_conf 4169999999973997575-34--366889999997765696899
No 38
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=95.72 E-value=0.041 Score=33.83 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=41.1
Q ss_pred CHHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 99999999973998728899970-587248--99999999864226755268998430157
Q gi|254781050|r 192 EFIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQFLKDEAKRGRKKPIVGFVAGKTAP 249 (300)
Q Consensus 192 ~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~fi~~~~~~~~~KPVva~~~GrtAp 249 (300)
++.+.|+...+||+.|+|+|... +||... ++.++.|+..+ ..+|||++++.+..|.
T Consensus 26 ~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r--~~~KPV~a~~~~~aAS 84 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAAR--AAGKPVVASGGGNAAS 84 (177)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH--HCCCCEEEEECCCCCC
T ss_conf 9999999995199962899996189818899999999999988--6599899997785620
No 39
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=95.67 E-value=0.025 Score=35.18 Aligned_cols=119 Identities=21% Similarity=0.251 Sum_probs=76.0
Q ss_pred HHHHHHHCCCCEEEECCCCEEECCCC-H-HCCE------ECCC---CCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 99998401771894068510135551-0-0020------0112---3577867999805414789999999719951676
Q gi|254781050|r 112 RVKARLEKSSSRLIGPNCPGILTPDS-C-KIGI------MPGS---IFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA 180 (300)
Q Consensus 112 ~l~~~A~~~g~riiGPNc~Gii~p~~-~-~lgi------~p~~---~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~ 180 (300)
.+.+.++..++.+-=|.-.|=-..++ . ++++ .|.. .-.+-.||+|---|++. -|-++-
T Consensus 270 lV~~~~~~~~~~~~l~~~~e~~~~d~~~~~i~l~dY~~~~~~r~E~~~~~~~iaiv~~~G~I~-----------~G~~t~ 338 (614)
T TIGR00705 270 LVTAVVSQAEVEKALKELFEEDEEDKEKRLISLDDYARKRPQRLENYDVDDKIAIVYLEGSIV-----------DGRDTE 338 (614)
T ss_pred HHHHHHHHCCCCCCCHHHCCCCCCCCHHCCCCHHHHHHCCHHHHHHCCCCCCEEEEEEECCEE-----------CCCCCC
T ss_conf 789987351753104444488723100032114665201323544227988169997006423-----------577566
Q ss_pred EE-CCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHH--HHHCCC-CCCEEEEEEEECC
Q ss_conf 40-55674467899999999973998728899970-587248999999998--642267-5526899843015
Q gi|254781050|r 181 VG-IGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKD--EAKRGR-KKPIVGFVAGKTA 248 (300)
Q Consensus 181 Vs-iG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~--~~~~~~-~KPVva~~~GrtA 248 (300)
-+ +||| +...+|+--.+||+.|+|||=.. +||.. -|.|-|+. +...+. +||||+=..+--|
T Consensus 339 ~nG~ggD-----~~a~lLr~a~~D~~iKAvvLRinSPGGsv--~Ase~IR~e~~~~~~~GkKPVivSMG~~AA 404 (614)
T TIGR00705 339 ENGVGGD-----TVAALLRKARSDPDIKAVVLRINSPGGSV--FASEIIRRELERLQARGKKPVIVSMGAMAA 404 (614)
T ss_pred CCCCHHH-----HHHHHHHHHCCCCCCEEEEEEEECCCCCE--EHHHHHHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf 7860036-----79999998707998128998863898634--287899999999982689978984350232
No 40
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=95.29 E-value=0.069 Score=32.36 Aligned_cols=55 Identities=27% Similarity=0.357 Sum_probs=36.7
Q ss_pred CHHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 99999999973998728899970-587248--9999999986422675526899843015
Q gi|254781050|r 192 EFIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQFLKDEAKRGRKKPIVGFVAGKTA 248 (300)
Q Consensus 192 ~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~fi~~~~~~~~~KPVva~~~GrtA 248 (300)
++.+.|+...+||+.+.|+|... +||..- ++.++.|+..++ ..|||++|..+..+
T Consensus 21 ~i~~~l~~A~~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~--~~KpV~a~~~~~aa 78 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRK--AKKPVVASMGDVAA 78 (208)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHH
T ss_conf 99999999950899748999974899629999999999998751--49859999777111
No 41
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.88 E-value=0.16 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=15.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 78679998054147899999997199516764055
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG 184 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG 184 (300)
-|+||++++.=. +...+.+.|+- ...+..|
T Consensus 161 ~GSIGVi~~~~~----~~~l~~k~Gv~-~~~~~ag 190 (317)
T COG0616 161 TGSIGVISGAPN----FEELLEKLGVE-KEVITAG 190 (317)
T ss_pred CCCCCEEEECCC----HHHHHHHCCCC-EEEEECC
T ss_conf 213501774566----89999865986-0344232
No 42
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.83 E-value=0.36 Score=27.80 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=78.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCEE---ECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 7399988884377999999986269--818997658998868---72774577531407850357886368862120456
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQ--TQVVGGIHPKKGSTY---WTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~g--t~ivagV~Pgkgg~~---~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
.||-|-|.||--|+...+.+.+..= ..+...-++...|+. +.++. +++-+++.|..+..++|.++-+.|....
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~--~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKS--IGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEECCHHHH
T ss_conf 18999942355899999998753998405788852311577160106750--3576211341001249999991766878
Q ss_pred HHHHHHHHHCCCCEEEEEC--------CCC----CHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 7889999853995899805--------884----6888999999840177189406851013
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCIT--------EGI----PVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 84 ~dai~Ea~~agik~iviit--------eGi----p~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
.....++.++| +++|. +-+ |+-....+.+.-+ +|..+.+|||.-+.
T Consensus 80 ~~~~p~~~~~G---~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst~~ 137 (334)
T COG0136 80 KEVEPKAAEAG---CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCSTIQ 137 (334)
T ss_pred HHHHHHHHHCC---CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHH-CCCEEECCCHHHHH
T ss_conf 99999999769---889968731115899877658869899974541-79789889718999
No 43
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.58 E-value=0.41 Score=27.41 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEECC---CCCCCCCCC--------CHHHHCCCCCCCEE
Q ss_conf 7973999888843779999999862698189976-58998868727---745775314--------07850357886368
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI-HPKKGSTYWTG---GNVNVPVFT--------TVAEAKERTAANAS 74 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV-~Pgkgg~~~~g---~~~~iPvy~--------sv~ea~~~~~~D~a 74 (300)
+.-||-|-|.||--|.--.+.....-.-++++=. +....|+.+.. ..+.-|+.. ...+. +..++|+.
T Consensus 2 ~kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~Dvv 80 (350)
T PRK08664 2 DKLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPV-DVDDVDIV 80 (350)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHH-HHCCCCEE
T ss_conf 97779998984299999999997099966899996553378841552032234667644465079868845-74389999
Q ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEECCCC----------CHH--HHHHHHHH---HHCCCCEEEE-CCCCEEECCCCH
Q ss_conf 8621204567889999853995899805884----------688--89999998---4017718940-685101355510
Q gi|254781050|r 75 VIYVPPSGAGDAIIESIEAEIPLIVCITEGI----------PVL--DMVRVKAR---LEKSSSRLIG-PNCPGILTPDSC 138 (300)
Q Consensus 75 vI~VP~~~v~dai~Ea~~agik~iviiteGi----------p~~--d~~~l~~~---A~~~g~riiG-PNc~Gii~p~~~ 138 (300)
..++|.....+.+.+..++|++ ++=.+.-| |+. +...+.+. .....-++|. |||.- -..
T Consensus 81 F~AlPhg~s~~~~~~l~~~g~~-VIDlSadfRl~~~~p~~~pE~n~~~~~~~~~~~~~~~~~~~lIanPGCy~----Ta~ 155 (350)
T PRK08664 81 FSALPSDVAAEVEEEFAKAGKP-VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCST----IGL 155 (350)
T ss_pred EECCCCHHHHHHHHHHHHCCCE-EEECCHHHCCCCCCCEECHHHCHHHHHHHHHHHHHCCCCCCEEECCCCHH----HHH
T ss_conf 9989826999999999877988-99786220355788445420388877346887764134665787797188----899
Q ss_pred HCCEECCCCCCCCCEEEEEECC
Q ss_conf 0020011235778679998054
Q gi|254781050|r 139 KIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 139 ~lgi~p~~~~~pG~VgivSqSG 160 (300)
-+++.|-.-+...+|-+.+.||
T Consensus 156 ~LaL~PL~~~~~~~i~i~~~sg 177 (350)
T PRK08664 156 TLALKPLMDFGIERVHVTTMQA 177 (350)
T ss_pred HHHHHHHHHCCCCEEEEEECCC
T ss_conf 9988999985997599994443
No 44
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.52 E-value=0.42 Score=27.32 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=79.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCC-------EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 39998888437799999998626-98189976589988-------68727745775314078503578863688621204
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYC-QTQVVGGIHPKKGS-------TYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~-gt~ivagV~Pgkgg-------~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
+|+|.|. |..|+..+..+..-+ +-=.+|.-++-|-- ..+....+++--.+.+.++...+ |+.+...|+.
T Consensus 3 ~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~VIn~~p~~ 79 (389)
T COG1748 3 KILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF--DLVINAAPPF 79 (389)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCCH
T ss_conf 2899898-666799999998578962999848888999987533466316994256758899987257--7899928705
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC---CEEE
Q ss_conf 567889999853995899805884688899999984017718940685---1013
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC---PGIL 133 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc---~Gii 133 (300)
.-..++.-|+++|+.. +-+|..-+. ..++.+.|++.|+..| |+| ||+.
T Consensus 80 ~~~~i~ka~i~~gv~y-vDts~~~~~--~~~~~~~a~~Agit~v-~~~G~dPGi~ 130 (389)
T COG1748 80 VDLTILKACIKTGVDY-VDTSYYEEP--PWKLDEEAKKAGITAV-LGCGFDPGIT 130 (389)
T ss_pred HHHHHHHHHHHHCCCE-EECCCCCCH--HHHHHHHHHHCCCEEE-CCCCCCCCHH
T ss_conf 4299999999859988-975467750--6565489887490797-1667686457
No 45
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=94.31 E-value=0.27 Score=28.62 Aligned_cols=102 Identities=21% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCEEEEECCCCCHHHHHH----HHHHHHCCCCEEEECCC-----------------CEEECCCC-HHCCEECCCCCCCCC
Q ss_conf 958998058846888999----99984017718940685-----------------10135551-000200112357786
Q gi|254781050|r 95 IPLIVCITEGIPVLDMVR----VKARLEKSSSRLIGPNC-----------------PGILTPDS-CKIGIMPGSIFRKGS 152 (300)
Q Consensus 95 ik~iviiteGip~~d~~~----l~~~A~~~g~riiGPNc-----------------~Gii~p~~-~~lgi~p~~~~~pG~ 152 (300)
+-...|+-||||..+..| |.+.||++|+.|+.=.| +|++..+. .. ...+..+||.
T Consensus 94 Ls~gfIlEEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINTtGiG~~~~~~v~~---~~~~~~~~GD 170 (345)
T TIGR02124 94 LSCGFILEEGFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINTTGIGVVPSGGVID---ISAHNIQPGD 170 (345)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCC---CCCCCCCCCC
T ss_conf 5072013407876789999999999999739768975735334577560588138888874784337---6535414576
Q ss_pred EEEEEECCCHHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 799980541478999-99997199516764055674467899999999973998
Q gi|254781050|r 153 VGILSRSGTLTYEAV-FQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEA 205 (300)
Q Consensus 153 VgivSqSG~l~~e~~-~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~ 205 (300)
.=++| |+++..=+ -++.|.|++|.+=|--=+.+.+++ +-.++..+|+
T Consensus 171 ~Ii~s--G~iG~HG~~Il~~Regl~f~~~i~SDCapL~~l----v~~ll~~~g~ 218 (345)
T TIGR02124 171 VIIVS--GSIGDHGAAILAVREGLGFETNIESDCAPLNGL----VEALLAVGGY 218 (345)
T ss_pred EEEEC--CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH----HHHHHHCCCC
T ss_conf 68981--684067899887650255256733327765899----9999843798
No 46
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=94.09 E-value=0.064 Score=32.54 Aligned_cols=149 Identities=22% Similarity=0.374 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEECCH------HHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHHHHCCCC
Q ss_conf 774577531407850357886368862120------4567889999853995899805884--68889999998401771
Q gi|254781050|r 51 GGNVNVPVFTTVAEAKERTAANASVIYVPP------SGAGDAIIESIEAEIPLIVCITEGI--PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 51 g~~~~iPvy~sv~ea~~~~~~D~avI~VP~------~~v~dai~Ea~~agik~iviiteGi--p~~d~~~l~~~A~~~g~ 122 (300)
+...++|+|.|+.||.+. ++++-+|=+-+ +.-.+.+.||+++|...+ .|. ...|--++.+.|+++|.
T Consensus 15 ~~~~~iPi~~sl~eA~~~-g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIv----sGLH~~L~ddp~l~~~A~~~g~ 89 (302)
T pfam07755 15 GIGRGIPIVSSLEEALAA-GADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVV----SGLHEFLSDDPELAAAAKKHGV 89 (302)
T ss_pred CCCCCCCEECCHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEE----HHHHHHHHCCHHHHHHHHHCCC
T ss_conf 999999986769999866-99989997416888489899999999998289262----3357775148989999998699
Q ss_pred EEEECCCCEEECCCCHHCCEECCCCC--CCCCEEEEE---ECCCHHH--HHHHHHHHCCCCEEEEEECC---------C-
Q ss_conf 89406851013555100020011235--778679998---0541478--99999997199516764055---------6-
Q gi|254781050|r 123 RLIGPNCPGILTPDSCKIGIMPGSIF--RKGSVGILS---RSGTLTY--EAVFQTSQEGLGQSTAVGIG---------G- 185 (300)
Q Consensus 123 riiGPNc~Gii~p~~~~lgi~p~~~~--~pG~VgivS---qSG~l~~--e~~~~~~~~g~G~S~~VsiG---------~- 185 (300)
+|+-=-.+ |...+++. +... +-=.|.++- ..|-+++ ++...+.++|+- +.++++| |
T Consensus 90 ~i~DvR~p----~~~~~~~~--g~~~~~~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~-a~fiaTGQTGili~g~Gv 162 (302)
T pfam07755 90 QIIDVRKP----PVDLPVAT--GKAREVKAKRVLTVGTDCAVGKMTTALELERALRERGLN-AAFVATGQTGILIAGYGV 162 (302)
T ss_pred EEEEECCC----CCCCCCCC--CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-EEEEECCCCEEEEECCEE
T ss_conf 79991589----99886576--840147987899960573340789999999999977998-479972761368815247
Q ss_pred --CCCCCCCHH-----HHHHHHHCCCCCCEEEEEEE
Q ss_conf --744678999-----99999973998728899970
Q gi|254781050|r 186 --DPVKGTEFI-----DVLELFLADEATESIVMVGE 214 (300)
Q Consensus 186 --D~~~G~~~~-----d~L~~~~~Dp~T~~Ivl~gE 214 (300)
|+++. ||+ ++.....+|+ +.|++-|+
T Consensus 163 ~iDav~~-DFvaGavE~~v~~~~~~~--d~iiIEGQ 195 (302)
T pfam07755 163 PLDAVPA-DFVAGAVEALVLDAAEED--DWIVIEGQ 195 (302)
T ss_pred EECCCHH-HHHHHHHHHHHHHHCCCC--CEEEEECC
T ss_conf 8432247-667678999998645467--87999165
No 47
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.04 E-value=0.2 Score=29.38 Aligned_cols=127 Identities=16% Similarity=0.274 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---CCEEECCC-CCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 79739998888437799999998626981899765899---88687277-457753140785035788636886212045
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK---GSTYWTGG-NVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk---gg~~~~g~-~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
|+-||.|.|. |.||.-|..+|.+ +|-||+.|..++- ..+.|.-. ..+..| .++.|++.. +|+-++.+|-..
T Consensus 36 KgKkI~IiG~-GsQG~aqaLNlRD-SGldV~~~LR~~si~~k~~Sw~~A~~~Gf~V-~t~eeai~~--ADvV~~LtPD~q 110 (489)
T PRK05225 36 KGKKIVIVGC-GAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQ--ADLVVNLTPDKQ 110 (489)
T ss_pred CCCEEEEECC-CHHHHHHHCCCCC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHC--CCEEEEECCCCC
T ss_conf 2885999803-6587776524410-5885699955530334166799999779964-678997323--587887088551
Q ss_pred HHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC
Q ss_conf 67889999853995--899805884688899999984017718940685101355510002
Q gi|254781050|r 83 AGDAIIESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG 141 (300)
Q Consensus 83 v~dai~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg 141 (300)
-.+.+ +.+..-+| .+..++-||.++.. ....-+.-.+.++-|-|||-..-....-|
T Consensus 111 ~~~v~-~~i~p~mk~g~~L~faHGfnI~~~--~i~~r~di~V~MvAPK~PG~~VR~~y~~G 168 (489)
T PRK05225 111 HSDVV-RAVQPLMKQGAALGYSHGFNIVEE--GEQIRKDITVVMVAPKCPGTEVREEYKRG 168 (489)
T ss_pred HHHHH-HHHHHHHCCCCEEEECCCCEEEEC--CCCCCCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 48999-999876126772111456505531--23168886389975899964899998627
No 48
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=93.99 E-value=0.55 Score=26.62 Aligned_cols=76 Identities=16% Similarity=-0.016 Sum_probs=55.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204----5--67889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+... ...-++++|-. + -.+.+.+++....|.+++.+-+= +..+..++.++|+++++.
T Consensus 123 ~P~Y~~y~~~~~~--~G~~~~~vpl~~~~~~~~d~~~l~~~i~~~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~~~~i~ 200 (388)
T PRK07366 123 DPGYPSHAGGVYL--AGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLV 200 (388)
T ss_pred CCCCCCHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCEE
T ss_conf 5877651899998--59857997546667984799999874042282999858989846680388888899987405507
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||-=.+-.-+
T Consensus 201 lisDEiY~~l 210 (388)
T PRK07366 201 LVHDFPYVDL 210 (388)
T ss_pred EECCCEEEEE
T ss_conf 8622021445
No 49
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=93.62 E-value=0.64 Score=26.20 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=51.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-C---------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH
Q ss_conf 999888843779999999862698189976589-9---------886872774577531407850357886368862120
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPK-K---------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pg-k---------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300)
|+|-|.||..|+.-.+..++. |-+|.+.+..- + |-+.+.++..+ -+++.+|.+ ++|..+..+|.
T Consensus 1 IlV~GatG~iG~~vv~~L~~~-g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d---~~sl~~al~--gvd~v~~~~~~ 74 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKA-GHPVRALVRDPKSELAKSLKAAGVELVEGDLDD---HESLVEALK--GVDVVFSVTGF 74 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCEEEEECCCC---HHHHHHHHC--CCCEEEEECCC
T ss_conf 099896828999999999858-993899971873665666641798899906888---789999967--99889991588
Q ss_pred HHH------HHHHHHHHHCCCCEEEEE
Q ss_conf 456------788999985399589980
Q gi|254781050|r 81 SGA------GDAIIESIEAEIPLIVCI 101 (300)
Q Consensus 81 ~~v------~dai~Ea~~agik~ivii 101 (300)
..- ...+.-|.++|+|.+|..
T Consensus 75 ~~~~~~~~~~~~~~AA~~aGVk~~V~s 101 (232)
T pfam05368 75 WLSKEIEDGKKLADAAKEAGVKHFIPS 101 (232)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 741779999999999997399834555
No 50
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.52 E-value=0.66 Score=26.10 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC
Q ss_conf 79739998888437799999998626981899765899886872774577
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV 56 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i 56 (300)
+..||+|||+ |.-|++-++...+. |-+||+ |+-.+|+ .+..+.+++
T Consensus 37 ~g~~vaIQGf-GnVG~~aA~~l~e~-GakvVa-VsD~~G~-i~~~~Gld~ 82 (254)
T cd05313 37 KGKRVAISGS-GNVAQYAAEKLLEL-GAKVVT-LSDSKGY-VYDPDGFTG 82 (254)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCCCE-EECCCCCCH
T ss_conf 8999999897-79999999999977-997999-9857850-887999988
No 51
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=93.43 E-value=0.68 Score=26.01 Aligned_cols=164 Identities=21% Similarity=0.330 Sum_probs=114.7
Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCC-C-----HHCCEECCCCC------------------------------CCCCEE
Q ss_conf 99999840177189406851013555-1-----00020011235------------------------------778679
Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPD-S-----CKIGIMPGSIF------------------------------RKGSVG 154 (300)
Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~-~-----~~lgi~p~~~~------------------------------~pG~Vg 154 (300)
..|.++=.++..+++==|=+ +|++. . +||.+--.-+| --|+||
T Consensus 182 ~~Ly~~F~e~Da~L~EINPL-ViT~~G~L~alDAKl~~DDnALFRH~~l~~~~D~~~~~~~e~~A~~~gL~Yv~LdGnIG 260 (389)
T TIGR01016 182 KKLYQIFLEKDASLVEINPL-VITKDGNLVALDAKLTIDDNALFRHPDLEEMEDYTQEDQLEVEAKQLGLNYVKLDGNIG 260 (389)
T ss_pred HHHHHHHHHCCCCEEEECCE-EECCCCCEEEEEEECCCCCCHHCCCCCHHHHCCCCCCCHHHHHHHHHCCCEEEECCCEE
T ss_conf 99999887537102545263-68789888998332244655100671168763888777337999861883688547707
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHH-HHHH-HHHHHHH
Q ss_conf 9980541478999999971995167640556744678999999999739987288999705872489-9999-9998642
Q gi|254781050|r 155 ILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEE-EAAQ-FLKDEAK 232 (300)
Q Consensus 155 ivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~-~aa~-fi~~~~~ 232 (300)
++.---+|+...+|.+.-.|=--..|.-+||-+.- -...+.|+....||+.|+|.+=- .||...- +.|+ .+.+...
T Consensus 261 c~vNGAGLAMaTMDIiKl~GG~PANFLDvGGGA~~-e~v~eA~~~vLsD~~VKvvfiNI-FGGI~RCD~vA~G~v~A~~~ 338 (389)
T TIGR01016 261 CMVNGAGLAMATMDIIKLYGGKPANFLDVGGGASE-ERVKEALKLVLSDKSVKVVFINI-FGGITRCDEVAKGLVEALKD 338 (389)
T ss_pred EECCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCH-HHHHHHHHHHHCCCCCEEEEEEE-CCCEECHHHHHHHHHHHHHC
T ss_conf 97043567899999999718895302245878898-99999989873599820899970-68600187887889999831
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC-----CEECCCHHHHHHHHHHHH
Q ss_conf 26755268998430157655322001122488889999999999889-----757889899999999998
Q gi|254781050|r 233 RGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAG-----ICIAPSPARIGRSLVELL 297 (300)
Q Consensus 233 ~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aG-----v~v~~s~~el~~~l~~~l 297 (300)
...+=|+|+=..|.....||+ .|+++| ++.++|.+|=++.+.++.
T Consensus 339 ~~~~VP~VvRL~GTN~E~G~~--------------------iL~e~gkdr~ni~~~~sm~~aA~kaV~~~ 388 (389)
T TIGR01016 339 VGVNVPVVVRLEGTNVEEGKK--------------------ILQESGKDRLNIIFATSMEEAAEKAVELA 388 (389)
T ss_pred CCCCCCEEEECCCCCHHHHHH--------------------HHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 885368789815788788889--------------------99972767788632268788999999983
No 52
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=93.30 E-value=0.72 Score=25.87 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHC---CCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 437799999998626---98189976589988687277457753140785035788636886212045678899998539
Q gi|254781050|r 18 GKAGTFHTEQAILYC---QTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAE 94 (300)
Q Consensus 18 g~~g~~~~~~~~~y~---gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~ag 94 (300)
|.-|+...+...+-. .-++++-....+--.......-..|++++..|.....++|+-|-..|...+.+.+.+|+++|
T Consensus 3 G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~~~~~aL~~G 82 (116)
T pfam03447 3 GAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAALLGDEPVTLDLDDLVADPRPDVVVECASSEAVAEYVLKALKAG 82 (116)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 70289999999949203567999998478343232124666715779999961889989998899489999999999879
Q ss_pred CCEEEEECCCC---CHH-HHHHHHHHHHCCCCEEE
Q ss_conf 95899805884---688-89999998401771894
Q gi|254781050|r 95 IPLIVCITEGI---PVL-DMVRVKARLEKSSSRLI 125 (300)
Q Consensus 95 ik~iviiteGi---p~~-d~~~l~~~A~~~g~rii 125 (300)
.. ++|... ..+ .-.+|.+.|+++|.++.
T Consensus 83 kh---VVTaNK~~lA~~~~~~eL~~~A~~~g~~~~ 114 (116)
T pfam03447 83 KH---VVTASKGALADLALRERLREAAEASGVRVY 114 (116)
T ss_pred CE---EEEECHHHHCCHHHHHHHHHHHHHCCCEEE
T ss_conf 98---999078896785799999999998399697
No 53
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=93.17 E-value=0.18 Score=29.74 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHH--HHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 899999999973998728899970-5872489--9999999864226755268998430157
Q gi|254781050|r 191 TEFIDVLELFLADEATESIVMVGE-IGGSAEE--EAAQFLKDEAKRGRKKPIVGFVAGKTAP 249 (300)
Q Consensus 191 ~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~--~aa~fi~~~~~~~~~KPVva~~~GrtAp 249 (300)
..+..-|++++.|+..|.|.||.- +||.... ...+.|+ ..+|||+++..|..|.
T Consensus 14 ~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~-----~~~~~v~t~~~g~aaS 70 (161)
T cd00394 14 DQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQ-----ASRKPVIAYVGGQAAS 70 (161)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH-----HCCCCEEEECCCCEEE
T ss_conf 99999999998389999789999899988899999999999-----6199999966873776
No 54
>PRK06207 aspartate aminotransferase; Provisional
Probab=93.14 E-value=0.76 Score=25.72 Aligned_cols=111 Identities=11% Similarity=0.113 Sum_probs=69.4
Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH---
Q ss_conf 71797399988884377999999986269818997658998868727745775314078503578863688621204---
Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS--- 81 (300)
Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~--- 81 (300)
+|..+.|+|-. =++++.+++-.++---|-.|+ ..-|.|.+-.+.++-.+. -++.||-+
T Consensus 99 ~d~~d~Iivt~-G~~~al~~a~~al~~pGDeVi----------------v~~P~y~~y~~~i~~~g~--~~vpv~l~~~~ 159 (406)
T PRK06207 99 VDARDGLIITP-GTQGALFLAVASTVTRGDKVA----------------IVQPDYFANRKLVEFFEG--EIVPVQLDYVS 159 (406)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCCEEE----------------EECCCCCCHHHHHHHCCC--EEEEEECCCCC
T ss_conf 99878699858-779999999999758998799----------------978987457999998298--79998567767
Q ss_pred -------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf -------567889999853995899805884------68889999998401771894068510135
Q gi|254781050|r 82 -------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 82 -------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
.-+|.+++++....|.+++.+-+= +..+..+|.++|+++++.||==.+-.-+.
T Consensus 160 ~~~~~~~~d~d~le~~i~~~tk~iil~nP~NPTG~v~s~e~l~~l~~la~~~~i~visDEiY~~l~ 225 (406)
T PRK06207 160 VDETRAGLDLDQLEAAFKAGVRVFLFSNPNNPAGVVYSPEEIAQIAALARRYGATVIADQLYSRLR 225 (406)
T ss_pred CCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf 763446899999997454487699988997985721339999999998755795999964664545
No 55
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=93.02 E-value=0.79 Score=25.61 Aligned_cols=227 Identities=20% Similarity=0.218 Sum_probs=122.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC-C---CCEEEEECCCCCCEE------E----CCC----CCCCCCCCCHHH--HCCCC
Q ss_conf 39998888437799999998626-9---818997658998868------7----277----457753140785--03578
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYC-Q---TQVVGGIHPKKGSTY------W----TGG----NVNVPVFTTVAE--AKERT 69 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~-g---t~ivagV~Pgkgg~~------~----~g~----~~~iPvy~sv~e--a~~~~ 69 (300)
||-|-|.||--|+.-.+..-..- - ++|+| +|+|.|+. | .|+ ..++|+-.+=.. +.++.
T Consensus 2 ~VavLGaTG~VGq~f~~lL~~HPr~Fe~~~v~A--S~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~~ 79 (358)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLEKHPRYFELAKVVA--SERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDHK 79 (358)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE--CCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECCC
T ss_conf 689970655468999999752698122889883--686557674454301212368584323476541347433566179
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC--------CCCCH------HHHHHHHHHHH----CCCCEEEECCCCE
Q ss_conf 863688621204567889999853995899805--------88468------88999999840----1771894068510
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCIT--------EGIPV------LDMVRVKARLE----KSSSRLIGPNCPG 131 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviit--------eGip~------~d~~~l~~~A~----~~g~riiGPNc~G 131 (300)
++|+..-++|...+...=.+++++|+. |+| +-||. -|-+++++.=| -.|..|-=|||--
T Consensus 80 dVD~vfSALp~~~A~~~E~~la~~G~~---VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t 156 (358)
T TIGR00978 80 DVDIVFSALPSEVAEEVEPKLAEEGII---VFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTT 156 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHH
T ss_conf 826998149979999999999856988---98768477888886778333561479999854001688617995761678
Q ss_pred EECCCCHHCCEECCC-CCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 135551000200112-3577867999805414789999999719951676405567446789999999997399872889
Q gi|254781050|r 132 ILTPDSCKIGIMPGS-IFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIV 210 (300)
Q Consensus 132 ii~p~~~~lgi~p~~-~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Iv 210 (300)
++.. +++-|-. .|.--+|-+.+ .=++-|-=|+|..+.|+++ + |+
T Consensus 157 ~~lT----l~LkPl~d~~~~~~V~v~T----------------------mQAvSGAGY~GVp~~~I~d---N------~i 201 (358)
T TIGR00978 157 AGLT----LALKPLIDAFGIKKVIVTT----------------------MQAVSGAGYPGVPSMDILD---N------VI 201 (358)
T ss_pred HHHH----HHHHHHHHCCCCCEEEEEE----------------------ECCHHCCCCCCCCHHHHHC---C------CC
T ss_conf 8776----1013464305845699987----------------------2000148888875455533---6------16
Q ss_pred EEEECCCHHHHHHHHHHHHH-HHCCC--CCCEEEEEEEECCCCCCCCCEEEEECC--CCCCCHHHHHHHHHHC
Q ss_conf 99705872489999999986-42267--552689984301576553220011224--8888999999999988
Q gi|254781050|r 211 MVGEIGGSAEEEAAQFLKDE-AKRGR--KKPIVGFVAGKTAPPGRTMGHAGAVIS--GGKGGAEDKINAMKEA 278 (300)
Q Consensus 211 l~gEiGG~~E~~aa~fi~~~-~~~~~--~KPVva~~~GrtAp~g~~~gHaGAi~~--~~~g~a~~k~~al~~a 278 (300)
=| |+|-.|.=..|-.+-. -+... -+|--.=++=.+.-==..-||+.++-= ...-+-++-.++|+..
T Consensus 202 P~--I~GEE~KIe~E~~KilsGkl~~g~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~~d~~EI~~~~~~f 272 (358)
T TIGR00978 202 PH--IGGEEEKIERETLKILSGKLENGKIEPAEFEVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSF 272 (358)
T ss_pred CC--CCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 55--063358987621333344003884642044068998744411164699999866877989999999840
No 56
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=92.96 E-value=0.35 Score=27.87 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=24.9
Q ss_pred HHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999999973998728899970-587248--9999999986422675526899843
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQFLKDEAKRGRKKPIVGFVAG 245 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~fi~~~~~~~~~KPVva~~~G 245 (300)
+.+.|+...+||+.++|+|... .||..- ++.++.|+..+ ...|||++|..+
T Consensus 34 l~~~l~~A~~D~~ik~vvL~i~s~gg~~~~~~ei~~ai~~~k--~~gKpVva~~~~ 87 (222)
T cd07018 34 LLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFR--ASGKPVIAYADG 87 (222)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECC
T ss_conf 999999983399963899966899976999999999999998--609939999525
No 57
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=92.89 E-value=0.33 Score=28.03 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=75.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 7399988884377999999986269818-997658998868727745775314078503578863688621204567889
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
+||-+.|+ |..|+-.+++.++- |-+| +.-.++.|--.... .+.-+++|++|+.+. .|+-+++||.+...+.+
T Consensus 2 ~~Ig~IGl-G~MG~~ma~~L~~~-g~~v~v~d~~~~~~~~~~~---~g~~~~~s~~e~~~~--~dvIi~~l~~~~~v~~V 74 (163)
T pfam03446 2 AKIGFIGL-GVMGSPMALNLLKA-GYTVTVYNRTPEKVEELVA---EGAVAAASPAEAAAS--ADVVITMVPAGAAVDAV 74 (163)
T ss_pred CEEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH---CCCEECCCHHHHHHC--CCEEEEECCCHHHHHEE
T ss_conf 88999836-79899999999977-9969999797887799998---399553999999861--99999925871454022
Q ss_pred HHH----HHC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999----853-995899805884688899999984017718940
Q gi|254781050|r 88 IES----IEA-EIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300)
Q Consensus 88 ~Ea----~~a-gik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300)
.+- +.. .-..++|-+.-+...+.+++.+.++++|++.+.
T Consensus 75 ~~~~~gl~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~lD 118 (163)
T pfam03446 75 IFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKELKEKGIRFLD 118 (163)
T ss_pred ECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 02631332313589889867989999999999987530344347
No 58
>PRK09147 aminotransferase; Provisional
Probab=92.76 E-value=0.86 Score=25.37 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred ECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCC------CCH
Q ss_conf 658998868727745775314078503578863688621204----5--6788999985399589980588------468
Q gi|254781050|r 40 IHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEG------IPV 107 (300)
Q Consensus 40 V~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteG------ip~ 107 (300)
++||..|..+.- .-|.|.+-..+..- ...-+++||.. + -++++.+++....|.+++.+-+ .+.
T Consensus 111 l~~gd~g~~Vl~---~~P~Y~~y~~~~~~--~G~~~v~vp~~~e~~~~~d~~~l~~~i~~~tk~iil~sP~NPTG~v~s~ 185 (397)
T PRK09147 111 IDRSDPGPLVVC---PNPFYQIYEGAALL--AGAEPYFLNCDPANGFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPL 185 (397)
T ss_pred CCCCCCCCEEEE---CCCCCCCCHHHHHH--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCH
T ss_conf 588898888996---88878774999997--6986899235712277769789898731127489868998988998888
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCE
Q ss_conf 889999998401771894068510
Q gi|254781050|r 108 LDMVRVKARLEKSSSRLIGPNCPG 131 (300)
Q Consensus 108 ~d~~~l~~~A~~~g~riiGPNc~G 131 (300)
.+..+|.++|+++++.||==.+-.
T Consensus 186 e~l~~l~~la~~~~i~iisDEiY~ 209 (397)
T PRK09147 186 DDWKKLFALSDRYGFVIASDECYS 209 (397)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999999996324728999826865
No 59
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=92.65 E-value=0.48 Score=27.00 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=32.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCC
Q ss_conf 797399988884377999999986269818997658998868727745775
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVP 57 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iP 57 (300)
+..||+|||+ |+-|++-++...++ |-+||+ |+-.+|+ .+..+.++++
T Consensus 31 ~g~~v~IqGf-GnVG~~~a~~l~~~-Gakvva-vsD~~G~-i~~~~Gldi~ 77 (237)
T pfam00208 31 EGKTVAVQGF-GNVGSYAAEKLLEL-GAKVVA-VSDSSGY-IYDPNGIDIE 77 (237)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCCCE-EECCCCCCHH
T ss_conf 8999999898-89999999999987-996999-9828767-9999999999
No 60
>KOG2741 consensus
Probab=92.55 E-value=0.91 Score=25.20 Aligned_cols=119 Identities=9% Similarity=0.133 Sum_probs=79.9
Q ss_pred CCCEEEEECCCC--HHHHHHHHHHHHH--CCCCEEEEECCCCCCE--EECCCC-C-CCCCCCCHHHHCCCCCCCEEEEEC
Q ss_conf 797399988884--3779999999862--6981899765899886--872774-5-775314078503578863688621
Q gi|254781050|r 7 KNTKVLVQGLTG--KAGTFHTEQAILY--CQTQVVGGIHPKKGST--YWTGGN-V-NVPVFTTVAEAKERTAANASVIYV 78 (300)
Q Consensus 7 ~~t~vivqGitg--~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~--~~~g~~-~-~iPvy~sv~ea~~~~~~D~avI~V 78 (300)
+++..|=|||-| +.++-+.+....- .+..|||-.+| +.-. .+.-.+ + +.-+|.|-.|..+.+.+|+..|..
T Consensus 2 ~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~ 80 (351)
T KOG2741 2 SDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYIST 80 (351)
T ss_pred CCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEECC
T ss_conf 9886058988604677899999721475458279999655-278899999865999874255799882498768799679
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 204567889999853995899805884688899999984017718940
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300)
|-++-.+.++-+++++=..++==.=.....+..+|++.|+.+|+.++=
T Consensus 81 ~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741 81 PNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred CCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 980089999999975995786565538899999999999976948876
No 61
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=92.11 E-value=1 Score=24.86 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCC-CCHHHHCCC-CCCCEEEE-ECCHHHHHHHHHHHHHCC
Q ss_conf 437799999998626981899765899886872774577531-407850357-88636886-212045678899998539
Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVF-TTVAEAKER-TAANASVI-YVPPSGAGDAIIESIEAE 94 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy-~sv~ea~~~-~~~D~avI-~VP~~~v~dai~Ea~~ag 94 (300)
|..|.......++|...+|+---.|.. +|-| +--.|-..+ .++|+.|. ..-|....+....|.++|
T Consensus 6 G~yGeR~~~~i~~~~~~~v~~~~~pe~-----------l~e~Ie~pee~Lp~~~~~Dl~i~y~lhPDl~~~l~~~~~e~g 74 (215)
T pfam02593 6 GQYGERAVENILNYFDFCVIVLEYPEE-----------LPEFIEDPEEYLPEIPEADLVIAYGLHPDLTLELAEIAAETG 74 (215)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCC-----------CCCCCCCHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 730289999998648942999617764-----------643236878865667787689994359507999999998649
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC
Q ss_conf 95899805884688899999984017718940685101355
Q gi|254781050|r 95 IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300)
Q Consensus 95 ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300)
+|.+ |+..+.|.-...++++.+.+.|+.+.-|.-+=-+.|
T Consensus 75 ~kal-Ivp~~~~~g~~~~lk~~~e~~g~~~~~P~~~CsL~~ 114 (215)
T pfam02593 75 IKAL-IVPAEAPKGLRKGLKEQLEEFGVEVEFPEPFCSLEP 114 (215)
T ss_pred CCEE-EEECCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 9889-974688621289999999975973877876557889
No 62
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=91.82 E-value=0.27 Score=28.60 Aligned_cols=186 Identities=25% Similarity=0.399 Sum_probs=101.2
Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC-----------CCC-------CHHHH----HHHHHHH
Q ss_conf 4078503578863688621204567889999853995899805-----------884-------68889----9999984
Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCIT-----------EGI-------PVLDM----VRVKARL 117 (300)
Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviit-----------eGi-------p~~d~----~~l~~~A 117 (300)
++..| +++.++|+=|+ +||-....+|+..|..=+.+=. +|+ |.+.. .||+=.+
T Consensus 177 d~~~d-mDqfnaDAPvv----KFvN~iL~DAir~GASDIHFEPYE~~yRvRyR~DG~L~Eva~PP~~l~~ri~aRiKvMS 251 (577)
T TIGR02538 177 DAEDD-MDQFNADAPVV----KFVNKILLDAIRKGASDIHFEPYEKKYRVRYRIDGVLHEVAQPPLKLANRIAARIKVMS 251 (577)
T ss_pred CCHHH-HHHHCCCCCCH----HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 00134-55423688701----33878799998468861211367687206751167316432585889999998999973
Q ss_pred ----------HCCCCEEEE----------CCCCEE---------ECCCCHH-----CCEECCC-------CCCC-CCEEE
Q ss_conf ----------017718940----------685101---------3555100-----0200112-------3577-86799
Q gi|254781050|r 118 ----------EKSSSRLIG----------PNCPGI---------LTPDSCK-----IGIMPGS-------IFRK-GSVGI 155 (300)
Q Consensus 118 ----------~~~g~riiG----------PNc~Gi---------i~p~~~~-----lgi~p~~-------~~~p-G~Vgi 155 (300)
|...+.+-= --||-+ +.++.++ ||+-|.. +.|| |=|=+
T Consensus 252 ~LDIaEkR~PQDGRiKl~~sk~k~iDFRVStLPTLfGEKvVLRiLDsS~a~Ldi~~LGFeP~Qk~~fL~Ai~kPqGMvLV 331 (577)
T TIGR02538 252 RLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAKLDIDKLGFEPDQKALFLEAIHKPQGMVLV 331 (577)
T ss_pred CCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEEECHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 26712245687873677537844551253787420244466776552212267422068888999999997079972886
Q ss_pred EEE--CC-CH-HHHHHHHHHHCCCCEEEE-----EECCC------CCCCCCCHHHHHHHH-HCCCCCCEEEEEEECCCHH
Q ss_conf 980--54-14-789999999719951676-----40556------744678999999999-7399872889997058724
Q gi|254781050|r 156 LSR--SG-TL-TYEAVFQTSQEGLGQSTA-----VGIGG------DPVKGTEFIDVLELF-LADEATESIVMVGEIGGSA 219 (300)
Q Consensus 156 vSq--SG-~l-~~e~~~~~~~~g~G~S~~-----VsiG~------D~~~G~~~~d~L~~~-~~Dp~T~~Ivl~gEiGG~~ 219 (300)
=-- || |. .|..++.|.+...=+||+ +.+=| .+-.|++|+..|+-| .+||+ |+|+|||-
T Consensus 332 TGPTGSGKTVSLYTaLniLN~~~~NISTAEDPVEINLpGINQVnvNpK~GLTFAaALrSFLRQDPD---IIMVGEIR--- 405 (577)
T TIGR02538 332 TGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPD---IIMVGEIR--- 405 (577)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHHHHHHCCCCCC---EEEEECCC---
T ss_conf 266598416878763112577674501144772464077151204667887879999864068998---89870666---
Q ss_pred HHHHHH-HHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCC--CCCHHHHHHHHHHCCCE
Q ss_conf 899999-999864226755268998430157655322001122488--88999999999988975
Q gi|254781050|r 220 EEEAAQ-FLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGG--KGGAEDKINAMKEAGIC 281 (300)
Q Consensus 220 E~~aa~-fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~--~g~a~~k~~al~~aGv~ 281 (300)
..|-|| .||+|. ||-++-+. +-+|...+..|-+=||.
T Consensus 406 DLETAEIAiKAAq-------------------------TGHLVlSTLHTNdAp~Tl~RL~NMGia 445 (577)
T TIGR02538 406 DLETAEIAIKAAQ-------------------------TGHLVLSTLHTNDAPETLARLVNMGIA 445 (577)
T ss_pred CHHHHHHHHHHHC-------------------------CCCCEECCCCCCCHHHHHHHHHHCCCH
T ss_conf 4215899999840-------------------------487210100016858999999753841
No 63
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.76 E-value=1.1 Score=24.61 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=57.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CC-------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH
Q ss_conf 399988884377999999986269818997658-99-------8868727745775314078503578863688621204
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-KK-------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-gk-------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300)
+|+|-|-||..|+.-.++.++. |-.|.|.|.. .| |-+.+.|+ +--.+|+.+|.+ ++|..+...+..
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~-G~~Vr~lvRnp~ka~~l~~~Gve~v~gD---l~dpesl~~Al~--GvdaVi~~~~~~ 75 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDE-GYQVKCLVRNLRKAAFLKEWGAELVYGD---LSLPETIPPALE--GITAIIDASTSR 75 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHCCCEEEEEC---CCCHHHHHHHHC--CCCEEEEECCCC
T ss_conf 7999899858999999999968-8908999578676323421596799942---788778999965--996799945667
Q ss_pred ---H----------HHHHHHHHHHCCCCEEEEEC
Q ss_conf ---5----------67889999853995899805
Q gi|254781050|r 82 ---G----------AGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 82 ---~----------v~dai~Ea~~agik~iviit 102 (300)
. ....+..|.++||+.+|-+|
T Consensus 76 ~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS 109 (319)
T CHL00194 76 PSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFS 109 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7886208898898899999999984998899961
No 64
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.54 E-value=1.2 Score=24.46 Aligned_cols=79 Identities=24% Similarity=0.253 Sum_probs=58.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 7399988884377999999986269818-997658998868727745775314078503578863688621204567889
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
.||.|.|=+|..|++-++....- |-+| |-|=++.|+. .+. ..+++...++..|+.+. +|+-+++||-....+.+
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~s-GyeV~I~gRd~~k~~-~va-~~LGv~~~~~~~e~~~~--advVIvsVPI~~T~~VI 75 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKDK-GYEVIVWGRDPKKGK-EVA-KELGVEYASDNIDAAKD--GDIVIVSVPINVTEDVI 75 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCHHH-HHH-HHHCCCCCCCHHHHHHC--CCEEEEECCHHHHHHHH
T ss_conf 97999947981779999999867-988999815731356-788-87386222447889724--99999984889999999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254781050|r 88 IESIE 92 (300)
Q Consensus 88 ~Ea~~ 92 (300)
.|..-
T Consensus 76 ~~laP 80 (441)
T PRK08655 76 REVAP 80 (441)
T ss_pred HHHHC
T ss_conf 99742
No 65
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.44 E-value=1.2 Score=24.39 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=74.0
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHH-H--HCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 179739998888437799999998-6--2698189976589988687277457753140785035788636886212045
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAI-L--YCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~-~--y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
.|.-+|-|-|.||--|....+..- + +.-.++..--++...|+++.-...++.+-+.-.+.. .++|++..+.|...
T Consensus 3 ~k~~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~~~~~~~~v~~~~~~~~--~~~Divf~a~~~~~ 80 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF--EGVDIAFFSAGGEV 80 (347)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCEEEEEECCHHHH--HCCCEEEECCCHHH
T ss_conf 8887799998803999999999972789875107998658779976268992789985784465--16978997685788
Q ss_pred HHHHHHHHHHCCCCEEEEEC------CCC----CHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 67889999853995899805------884----6888999999840177189406851013
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCIT------EGI----PVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 83 v~dai~Ea~~agik~iviit------eGi----p~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
..+...++.++|.+.+ =-+ +++ |+-....++ +..+ .+-.|||.-+.
T Consensus 81 s~~~~~~~~~~G~~VI-D~Ssa~R~~~~vPlvvPEvN~~~l~---~~~~-iIanPnC~tt~ 136 (347)
T PRK06728 81 SRQFVNQAVSSGAIVI-DNTSEYRMAHDVPLVVPEVNAHTLK---EHKG-IIAVPNCSALQ 136 (347)
T ss_pred HHHHHHHHHHCCCEEE-ECCHHHCCCCCCCEECCCCCHHHHH---CCCC-EEECCCHHHHH
T ss_conf 9999999985896999-8975656899974588752966762---3278-37789808889
No 66
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.33 E-value=1.2 Score=24.32 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=57.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC------CCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 399988884377999999986269818997658998868727------74577531407850357886368862120456
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG------GNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g------~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
||.|-|.||--|.--.+...+.-.-+++.--+-...|+++.. ...++++-+.-.+... .++|+.+.+.|....
T Consensus 3 kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~~-~~~Divf~alp~~~S 81 (345)
T PRK00436 3 KVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEIA-AGADVVFLALPHGVS 81 (345)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHHC-CCCCEEEECCCHHHH
T ss_conf 9999896618899999999809986799997578689737785811037778747649988942-699999988983899
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 7889999853995
Q gi|254781050|r 84 GDAIIESIEAEIP 96 (300)
Q Consensus 84 ~dai~Ea~~agik 96 (300)
.+.+.++.++|++
T Consensus 82 ~~~~~~~~~~g~~ 94 (345)
T PRK00436 82 MELAPQLLEAGVK 94 (345)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999866987
No 67
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.04 E-value=1.3 Score=24.14 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=78.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCC-CCCEEEEECCHHHHHHHH
Q ss_conf 3999888843779999999862698189-97658998868727745775314078503578-863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERT-AANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP~~~v~dai 87 (300)
||=+.|+ |.-|.-.+.+..+- |-+|+ .-.+|.+--.. ...+...++|++|.++.- .+++-++.||...+.+.+
T Consensus 2 kIGfIGL-G~MG~~mA~nL~~~-G~~V~v~d~~~~~~~~~---~~~g~~~~~s~~e~~~~l~~~~vI~~~vp~g~~v~~v 76 (298)
T PRK12490 2 KLGLIGL-GKMGGNMAERLRED-GHEVVGYDVNQEAVDVA---GKLGITARHSLEELVSKLEAPRAIWVMVPAGEVTESV 76 (298)
T ss_pred EEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHH---HHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf 7999834-67689999999977-99489984998999999---9869954289999997378998899976894559999
Q ss_pred HHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 99985399--5899805884688899999984017718940685101
Q gi|254781050|r 88 IESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 88 ~Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
.+.+...+ ..++|-......+|.+++.+.++++|++.++--..|-
T Consensus 77 i~~l~~~L~~g~iiID~sts~~~~t~~~~~~l~~~gi~flDapVSGG 123 (298)
T PRK12490 77 LKDLYPLLSPGDIVIDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (298)
T ss_pred HHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 99688526999888528878999999999999975990305535788
No 68
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=91.01 E-value=0.75 Score=25.73 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=62.3
Q ss_pred CEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHC--CCCCCCEEEEECCH----
Q ss_conf 73999888843--77999999986269818997658998868727745775314078503--57886368862120----
Q gi|254781050|r 9 TKVLVQGLTGK--AGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAK--ERTAANASVIYVPP---- 80 (300)
Q Consensus 9 t~vivqGitg~--~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~--~~~~~D~avI~VP~---- 80 (300)
.++.+-||=|+ -|.+--.....+. ..+||| -|+|-. ...+-+..+|+|.-
T Consensus 28 ~~iv~~GmGGSGi~G~~~~~~~~~~~---------------------~~~Pvf-vv~DY~~p~~v~~~~~lIAvSYSGNT 85 (338)
T TIGR02128 28 DEIVISGMGGSGIAGRILSELLLEKS---------------------FEVPVF-VVKDYRLPAFVDGKTLLIAVSYSGNT 85 (338)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHC---------------------CCCCEE-EECCCCCCCCCCCCEEEEEEECCCCH
T ss_conf 62278725657899999999865324---------------------788888-87077896988985179998617866
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 456788999985399589980588468889999998401771894
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.....+.++|..++.|.++|-|-| +|.+.|+++|..++
T Consensus 86 ~ETl~~~e~A~~~~~~~~aITSGG-------~L~e~A~e~g~~~i 123 (338)
T TIGR02128 86 EETLSAVEEAKKKGAKVIAITSGG-------KLEEMAKEEGLDVI 123 (338)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC-------HHHHHCCCCCCCEE
T ss_conf 899999999986579559994485-------38863011487568
No 69
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=90.91 E-value=1.4 Score=24.07 Aligned_cols=115 Identities=15% Similarity=0.078 Sum_probs=75.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 3999888843779999999862698189976--58998868727745775314078503578863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGI--HPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV--~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
||-+-|. |..|++.++. +..+...-+..| .+......-.-...+++++.++.+..+ .+|+-|=..++..+.+-.
T Consensus 3 rVgiiG~-GaIG~~va~~-l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~DlVVE~A~~~av~~~~ 78 (265)
T PRK13303 3 KVAMIGF-GAIAAAVYEL-LEHDPRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDALAQ--RPDLVVECAGHAALKEHV 78 (265)
T ss_pred EEEEECC-CHHHHHHHHH-HHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHH--CCCEEEECCCHHHHHHHH
T ss_conf 9999854-6899999999-84499727999994685267787530458864479889823--799999898889999999
Q ss_pred HHHHHCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCEEEECC
Q ss_conf 9998539958998058846888-9999998401771894068
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLD-MVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d-~~~l~~~A~~~g~riiGPN 128 (300)
..++++|..+++.=..-+...+ ..+|.+.|++++-++.=|.
T Consensus 79 ~~~L~~g~dl~v~SvgALaD~~~~~~l~~~A~~~~~~i~ips 120 (265)
T PRK13303 79 VPILKAGIDCAVASVGALADEALRERLEQAAEAGGARLHLLS 120 (265)
T ss_pred HHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999972998899881585798899999999986897599726
No 70
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=90.44 E-value=1.5 Score=23.80 Aligned_cols=113 Identities=10% Similarity=0.168 Sum_probs=76.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCE--EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 399988884377999999986269--81899765899886--87277457753140785035788636886212045678
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQ--TQVVGGIHPKKGST--YWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~g--t~ivagV~Pgkgg~--~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300)
||-+-|. |..|++.++.... +. -.++ +|..+.... ... ...+.|.+.++.|..+ .+|+-|=..++..+.|
T Consensus 3 rVgiIG~-GaIG~~Va~~l~~-g~~~~~L~-~V~~r~~~~a~~~a-~~~~~~~~~~ld~l~~--~~DlVVE~A~~~av~~ 76 (265)
T PRK13304 3 KIGIVGC-GAIANLITKAIDS-GRINAELL-AFYDRNLEKAENLA-EKTGAPACLSIDELVK--DVDLVVECASQKAVED 76 (265)
T ss_pred EEEEECC-CHHHHHHHHHHHC-CCCCEEEE-EEECCCHHHHHHHH-HCCCCCCCCCHHHHHH--CCCEEEECCCHHHHHH
T ss_conf 9999865-7899999999867-99864999-99789878988776-4159971279899833--8999998989899999
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCEEEECC
Q ss_conf 899998539958998058846888-9999998401771894068
Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLD-MVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 86 ai~Ea~~agik~iviiteGip~~d-~~~l~~~A~~~g~riiGPN 128 (300)
-...++++|...++.=..-+...+ ..+|.+.|+++|-|+.=|.
T Consensus 77 ~~~~~L~~G~dlvv~SvGALaD~~l~~~L~~~A~~~g~~i~ips 120 (265)
T PRK13304 77 TVPKSLNNGKDVIIMSVGALADKELFLKLYKLAKENGCKIYLPS 120 (265)
T ss_pred HHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999975998999813685598999999999973797799826
No 71
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.17 E-value=1.2 Score=24.37 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=73.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH-HHHHHH
Q ss_conf 39998888437799999998626981-8997658998868727745775314078503578863688621204-567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQ-VVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS-GAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~-ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~-~v~dai 87 (300)
||-+.|+ |.-|+-.+++.++- |.+ .|.-.+|.|--.... .+.-+.+|.+|+.+. .|+-+.+||-. .+.+++
T Consensus 3 kIgfIGl-G~MG~~ma~~L~~~-G~~v~v~dr~~~~~~~l~~---~Ga~~~~s~~e~~~~--~dvvi~~l~~~~~v~~v~ 75 (295)
T PRK11559 3 KVGFIGL-GIMGKPMSKNLLKA-GYSLVVYDRNPEAIADVIA---AGAETASTAKAIAEQ--CDVIITMLPNSPHVKEVA 75 (295)
T ss_pred EEEEECC-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH---CCCCCCCCHHHHHHC--CCEEEEECCCCCCHHHHH
T ss_conf 8999840-57699999999978-9958999299999999998---599203999999843--887899668981077663
Q ss_pred H--HHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9--9985399--58998058846888999999840177189406
Q gi|254781050|r 88 I--ESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 88 ~--Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300)
. +-+-.+. ..++|-+.-+...+.+++.+.++++|++.+--
T Consensus 76 ~g~~gi~~~~~~g~iiid~sT~~p~~~~~~a~~~~~~g~~~lDa 119 (295)
T PRK11559 76 LGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIEMLDA 119 (295)
T ss_pred HCCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 07766011389998899899999999999999999659838942
No 72
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.67 E-value=1.7 Score=23.41 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=50.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CCCC----EEECCCCCCCCCCCCHHHHCCC-----CCCCEEEEECCH
Q ss_conf 99988884377999999986269818997658-9988----6872774577531407850357-----886368862120
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-KKGS----TYWTGGNVNVPVFTTVAEAKER-----TAANASVIYVPP 80 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-gkgg----~~~~g~~~~iPvy~sv~ea~~~-----~~~D~avI~VP~ 80 (300)
++|-|.||+.|+...+...+. |.+|.+.+.. .|.- +-+..+.. -.+|..++... .++|...+..|+
T Consensus 2 IlVtGATG~iG~~v~~~L~~~-g~~v~~~~R~~~~~~~~~~~~v~~d~~---d~~~~~~a~~~~d~~~~~v~~v~l~~p~ 77 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSAGPNEKHVKFDWL---DEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCCEEEEECCHHHCCCCCCCEEEEECC---CCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 899989981899999999868-997899958856646666753686444---8114888976353231274189983899
Q ss_pred -----HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf -----45678899998539958998058
Q gi|254781050|r 81 -----SGAGDAIIESIEAEIPLIVCITE 103 (300)
Q Consensus 81 -----~~v~dai~Ea~~agik~iviite 103 (300)
+.....+.-|.++||+.+|.+|.
T Consensus 78 ~~~~~~~~~~~i~aA~~aGV~~iV~lS~ 105 (285)
T TIGR03649 78 IPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8776789999999999849988999830
No 73
>PRK07680 late competence protein ComER; Validated
Probab=89.60 E-value=1.8 Score=23.38 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=70.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCEEE-CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 399988884377999999986269---8189976589988687-277457753140785035788636886212045678
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQ---TQVVGGIHPKKGSTYW-TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~g---t~ivagV~Pgkgg~~~-~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300)
|+.+.|. |+-|+--.+-.++-+. .+|.. .++...-... .....++.++++-.|+.++ .|+-++.|.|..+.+
T Consensus 2 kI~fIG~-GnMg~Aii~gl~~~~~~~~~~i~i-~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~--~dvIiLaVKPq~~~~ 77 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESRAVKPSCLTI-TNRTPAKAYHIKEKYPSIHVAKTIEEVIEQ--SELIFICVKPLDIYP 77 (273)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-ECCCHHHHHHHHHHCCCEEEECCHHHHHHC--CCEEEEECCHHHHHH
T ss_conf 8999876-999999999999779989456999-889989999999876990886888999840--998999648888999
Q ss_pred HHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 8999985--3995899805884688899999984017718940685101
Q gi|254781050|r 86 AIIESIE--AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 86 ai~Ea~~--agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
++.|... ..=+.+|-+..|+...+..++. ...=+|++ ||.+.-
T Consensus 78 vl~~i~~~~~~~~~iISi~AGisi~~l~~~~---~~~vvR~M-PN~~~~ 122 (273)
T PRK07680 78 LLKKLAPHFSDEKCLVSITSPISPEQLETLV---PCQVARII-PSITNR 122 (273)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHHC---CCCCEEEE-CCCCHH
T ss_conf 9999886347884899955888899999747---99815886-788602
No 74
>PRK09082 putative aminotransferase; Validated
Probab=89.57 E-value=1.8 Score=23.36 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred EECCCEEEE-ECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH--
Q ss_conf 717973999-88884377999999986269818997658998868727745775314078503578863688621204--
Q gi|254781050|r 5 VDKNTKVLV-QGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS-- 81 (300)
Q Consensus 5 ~~~~t~viv-qGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~-- 81 (300)
+|.++.|+| .| ++++-+++-+.+---|-.|+ ..-|.|.+-..+.+.. ..-++.||-.
T Consensus 88 ~~p~~eI~vT~G--a~~al~~~~~al~~pGD~Vl----------------v~~P~Y~~y~~~~~~~--G~~~v~vpl~~~ 147 (386)
T PRK09082 88 YDADSEITVTAG--ATEALFAAILALVRPGDEVI----------------VFDPSYDSYAPAIELA--GGRAVRVALQPP 147 (386)
T ss_pred CCCCCCEEECCC--HHHHHHHHHHHHCCCCCEEE----------------EECCCCHHHHHHHHHC--CCEEEEECCCCC
T ss_conf 898883898778--89999999999759999899----------------9268628799999984--998999267798
Q ss_pred -HH--HHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCCEEECCC----CHHCC-------
Q ss_conf -56--7889999853995899805884------6888999999840177189406851013555----10002-------
Q gi|254781050|r 82 -GA--GDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCPGILTPD----SCKIG------- 141 (300)
Q Consensus 82 -~v--~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~Gii~p~----~~~lg------- 141 (300)
+. .+.+.+++....|.+++.+-+= +..+..+|.++|+++++.||==++-+-+.-+ ..-+.
T Consensus 148 ~~~~d~~~l~~~i~~~tk~iil~sP~NPTG~v~s~~~l~~l~~la~~~~i~ii~DE~Y~~l~~d~~~~~s~~~~~~~~~~ 227 (386)
T PRK09082 148 DFRVDWQRFAAAITPRTRLIILNTPHNPSGTVWSAADMDALAQLIAGTDILVLSDEVYEHIVFDGQGHASVLRHPELRER 227 (386)
T ss_pred CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCHHHCCCCCCC
T ss_conf 88879999996367576499979996973601363559999999998194797112223311389888684448653345
Q ss_pred ---E-ECCCCC-CCC-CEEEEEECCCHHHHHH
Q ss_conf ---0-011235-778-6799980541478999
Q gi|254781050|r 142 ---I-MPGSIF-RKG-SVGILSRSGTLTYEAV 167 (300)
Q Consensus 142 ---i-~p~~~~-~pG-~VgivSqSG~l~~e~~ 167 (300)
+ ..++.| .|| ++|.+--+..+...+.
T Consensus 228 ~i~i~S~SK~~~~~G~RiG~~v~p~~l~~~~~ 259 (386)
T PRK09082 228 AFVVSSFGKTYHVTGWKVGYCVAPAALSAEFR 259 (386)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECHHHHHHHH
T ss_conf 44432444245787510599987899999999
No 75
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=0.55 Score=26.59 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=61.3
Q ss_pred CEEEEECCCCC----CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 18997658998----868727745775314078503578863688621204------56788999985399589980588
Q gi|254781050|r 35 QVVGGIHPKKG----STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEG 104 (300)
Q Consensus 35 ~ivagV~Pgkg----g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteG 104 (300)
.+++.|--... .+.+.++..++|+-+|+.|+.+... ++.+|.+-++ .-...+.||+++|...+--.-.
T Consensus 29 ~iv~vvD~~~~~~~~~~~l~~~~~~vpii~s~~~~~e~~~-e~liIgia~~gG~~~~~~~~~i~eAl~~G~nVvsglh~- 106 (339)
T COG3367 29 AIVAVVDRREAGDDTPRELGGDKADVPIISSVEEALEGLA-EALIIGIAPPGGVLPESWREYIVEALEAGMNVVSGLHS- 106 (339)
T ss_pred EEEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHH-
T ss_conf 0355774300145567874786689710054899973476-44899961588857578899999999837316655577-
Q ss_pred CCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4688899999984017718940
Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLIG 126 (300)
Q Consensus 105 ip~~d~~~l~~~A~~~g~riiG 126 (300)
...|--++.++|+++|.|+.-
T Consensus 107 -~ls~dp~~~k~A~~~G~rl~d 127 (339)
T COG3367 107 -FLSDDPEFVKLAERTGVRLDD 127 (339)
T ss_pred -HHHCCHHHHHHHHHCCCEEEE
T ss_conf -761186899999871975676
No 76
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=89.33 E-value=1.8 Score=23.25 Aligned_cols=76 Identities=13% Similarity=-0.015 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204----5--678899998539958998058846------8889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~g~ 122 (300)
.-|.|.+-..+.+.. ..-++.+|-. + -.+.+.+++....|.+++.+-+=| ..+..+|.++|+++++
T Consensus 121 ~~P~Y~~y~~~~~~~--g~~~v~vpl~~~~~~~~d~e~l~~~~~~~~k~iil~~P~NPTG~v~s~~~l~~i~~la~~~~i 198 (383)
T TIGR03540 121 PDPGYPVYRIGTLFA--GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNI 198 (383)
T ss_pred CCCCCCCHHHHHHHC--CCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 789860169999971--985899613357798579999987452377499989998970701210222201001245540
Q ss_pred EEEECCCCEE
Q ss_conf 8940685101
Q gi|254781050|r 123 RLIGPNCPGI 132 (300)
Q Consensus 123 riiGPNc~Gi 132 (300)
.||==.+-.-
T Consensus 199 ~iIsDEiY~~ 208 (383)
T TIGR03540 199 IVCHDNAYSE 208 (383)
T ss_pred EEECCHHHHH
T ss_conf 5761102555
No 77
>PRK06348 aspartate aminotransferase; Provisional
Probab=89.31 E-value=1.8 Score=23.24 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=53.1
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH----H--HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 7531407850357886368862120----4--567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP----S--GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~----~--~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+... .+..++.+|. . .-.+.+++++....|.+++.+-+= +..+..+|.++|+++++.
T Consensus 120 ~P~Y~~y~~~~~~--~g~~~v~~~~~~~~~~~~d~~~le~~i~~~tk~iil~~P~NPTG~v~~~e~l~~l~~la~~~~i~ 197 (383)
T PRK06348 120 EPYFTPYKDQVEM--VGGKPIIFETYEEDGFQINVDKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKVAIENDLV 197 (383)
T ss_pred CCCCCHHHHHHHH--HCCCEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 6986026999998--08862532445666865796898985687872999899979888877778999999765306869
Q ss_pred EEECCCCEE
Q ss_conf 940685101
Q gi|254781050|r 124 LIGPNCPGI 132 (300)
Q Consensus 124 iiGPNc~Gi 132 (300)
||==.+-.-
T Consensus 198 visDEiY~~ 206 (383)
T PRK06348 198 IISDEVYDG 206 (383)
T ss_pred EEECCCHHH
T ss_conf 985143344
No 78
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=89.24 E-value=1.1 Score=24.66 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHC-----------CCCEEEEECCCCCCEE--ECCCCCCCCCCCCHHHHCCCCCCCE
Q ss_conf 79739998888437799999998626-----------9818997658998868--7277457753140785035788636
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYC-----------QTQVVGGIHPKKGSTY--WTGGNVNVPVFTTVAEAKERTAANA 73 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~-----------gt~ivagV~Pgkgg~~--~~g~~~~iPvy~sv~ea~~~~~~D~ 73 (300)
+.-||+|-| -|+|.+|..-.+.-- |-. -+|+= .+|-.. -.-.-++||.|.+|.|.++ ++|+
T Consensus 2 ~~~~vlv~G--~~FG~~Yl~A~~~~~~lWaarPahl~r~~-L~GlL-AqGS~RSR~LA~~lGvpLy~~ve~lp~--~~~~ 75 (378)
T TIGR01761 2 KKQSVLVCG--TRFGEVYLAAFAAAPRLWAARPAHLERFE-LAGLL-AQGSERSRALAHRLGVPLYSEVEELPD--DIDI 75 (378)
T ss_pred CCCEEEEEE--CCHHHHHHHHHCCCHHHHHCCCCCCCCCE-EEEEE-HHCCHHHHHHHHHHCCCCCCCHHHCCC--CCCE
T ss_conf 985799961--66678999972678557413634367732-44110-010368999999809841067100468--8755
Q ss_pred EEEECCHHHHHH----HHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHCCCCEEEECCCCEEECC-CCHHCCEEC-C-
Q ss_conf 886212045678----8999985399589980588-4688899999984017718940685101355-510002001-1-
Q gi|254781050|r 74 SVIYVPPSGAGD----AIIESIEAEIPLIVCITEG-IPVLDMVRVKARLEKSSSRLIGPNCPGILTP-DSCKIGIMP-G- 145 (300)
Q Consensus 74 avI~VP~~~v~d----ai~Ea~~agik~iviiteG-ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p-~~~~lgi~p-~- 145 (300)
|-|.|-...+-+ .++-.++.||. ++-|| +-..|..++.+.|++.|-|-. =||.==-.| ++-+|-..- .
T Consensus 76 ACvvvRSa~~Gg~G~~LA~aLL~RGi~---VLqEHPl~p~d~~~L~~lA~~~Gr~Y~-vNTFYPh~PAv~~Fi~~~~q~r 151 (378)
T TIGR01761 76 ACVVVRSAIVGGKGSELARALLKRGIH---VLQEHPLHPEDIAELLRLAERQGRRYL-VNTFYPHLPAVRRFIEYARQLR 151 (378)
T ss_pred EEEEEEEEEECCCCHHHHHHHHHCCCE---EEECCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCCCHHHHHHHHHHHHHH
T ss_conf 588852253179725899999856751---563289887789999999997098664-2067787337899999999999
Q ss_pred CCCCCCC-EEEEEECCCHHHHHHHHHHHC--CCCEEEEEECCC-CCCCCCCHHH-------------------------H
Q ss_conf 2357786-799980541478999999971--995167640556-7446789999-------------------------9
Q gi|254781050|r 146 SIFRKGS-VGILSRSGTLTYEAVFQTSQE--GLGQSTAVGIGG-DPVKGTEFID-------------------------V 196 (300)
Q Consensus 146 ~~~~pG~-VgivSqSG~l~~e~~~~~~~~--g~G~S~~VsiG~-D~~~G~~~~d-------------------------~ 196 (300)
...++++ +==++-|=-+.|..+|++.+. |-|.-.|++-=+ |...+-|+.+ +
T Consensus 152 r~~~~~p~~v~at~g~Ql~ys~LD~~~~~LgG~GtfaC~~p~~l~~~~~~~~~~rsllenP~~~~~L~~v~agVplsL~l 231 (378)
T TIGR01761 152 RAARKKPAFVEATTGVQLLYSTLDILARALGGEGTFACVGPLSLESASVGDLSDRSLLENPFPFRALQGVIAGVPLSLNL 231 (378)
T ss_pred HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCCHHHHH
T ss_conf 99747897898400268999999999998478841442155111336677502355530755566520000120023767
Q ss_pred HHHHH-CCCCCCEEEE
Q ss_conf 99997-3998728899
Q gi|254781050|r 197 LELFL-ADEATESIVM 211 (300)
Q Consensus 197 L~~~~-~Dp~T~~Ivl 211 (300)
+.||. +||+.+..+|
T Consensus 232 q~~LdpadPD~h~~im 247 (378)
T TIGR01761 232 QNYLDPADPDNHSLIM 247 (378)
T ss_pred HHHCCCCCCCCCHHHH
T ss_conf 6114735687502123
No 79
>PRK07681 aspartate aminotransferase; Provisional
Probab=89.09 E-value=1.4 Score=24.05 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204----5--6788999985399589980588------4688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+.+. .+.-+++||-. + -.+.+.+++....|.+++.+-+ .+..+..+|.++|+++++.
T Consensus 124 ~P~Y~~y~~~~~~--~g~~~v~vpl~~e~~~~~d~~~l~~~i~~~tk~iil~~P~NPTG~v~s~e~l~~l~~la~~~~i~ 201 (399)
T PRK07681 124 DPGYTAYETGIQM--AGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNII 201 (399)
T ss_pred CCCCCCHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 6874427999987--69989995057666743689999985322555999769989888778999999999985313633
Q ss_pred EEECCCCEEECC-CCH---HC--------CE---ECCCCCC-CC-CEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 940685101355-510---00--------20---0112357-78-679998054147899999997199516764
Q gi|254781050|r 124 LIGPNCPGILTP-DSC---KI--------GI---MPGSIFR-KG-SVGILSRSGTLTYEAVFQTSQEGLGQSTAV 181 (300)
Q Consensus 124 iiGPNc~Gii~p-~~~---~l--------gi---~p~~~~~-pG-~VgivSqSG~l~~e~~~~~~~~g~G~S~~V 181 (300)
||==.+-+-+.- +.- .+ .+ ..++.|. || ++|.+--...+...+........++.+..+
T Consensus 202 iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~I~i~S~SK~~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~ 276 (399)
T PRK07681 202 VVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPI 276 (399)
T ss_pred EECCCCCCCEEECCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 431255111031798875764433541345253221345556532169997099999999999986656745399
No 80
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.09 E-value=1.9 Score=23.14 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf 797399988884377999999986269818997658998868
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTY 48 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~ 48 (300)
+..||+|||+ |+-|++-++...+. |.+||+ |+-.+|+-+
T Consensus 22 ~g~~vaVqGf-GnVG~~~a~~l~~~-Gakvva-vsD~~G~i~ 60 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEE-GGKVLA-VSDPDGYIY 60 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCCCEEE
T ss_conf 7999999898-89999999999985-998999-985787177
No 81
>KOG1680 consensus
Probab=89.03 E-value=0.88 Score=25.30 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=31.8
Q ss_pred CHHHHHHHHHCCCCCCEEEEEEECC----CHHHHHHH----------HHHHHHHHCC-CCCCEEEEEEE
Q ss_conf 9999999997399872889997058----72489999----------9999864226-75526899843
Q gi|254781050|r 192 EFIDVLELFLADEATESIVMVGEIG----GSAEEEAA----------QFLKDEAKRG-RKKPIVGFVAG 245 (300)
Q Consensus 192 ~~~d~L~~~~~Dp~T~~Ivl~gEiG----G~~E~~aa----------~fi~~~~~~~-~~KPVva~~~G 245 (300)
...|.+.-|++|+...+||+||.=+ |.+-.+.. .|.+.....+ .+||||+-+-|
T Consensus 68 eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG 136 (290)
T KOG1680 68 ELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAING 136 (290)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 999999974046765479997688752364378987521123445443001256665246551375503
No 82
>PRK07324 transaminase; Validated
Probab=88.99 E-value=1.1 Score=24.63 Aligned_cols=76 Identities=8% Similarity=0.029 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH--H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 775314078503578863688621204--5--67889999853995899805884------6888999999840177189
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS--G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~--~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
.-|.|.+..+.++..++.+..+-+.+. + -.+.+.+++....|.+++.+-+= +..+..+|.++|+++++.|
T Consensus 110 ~~P~Y~~~~~~~~~~G~~v~~~~l~~~~~~~~Dl~~l~~~i~~~tkliil~nP~NPTG~v~s~e~l~~l~~la~~~~i~i 189 (373)
T PRK07324 110 VYPTYQQLYDIPESLGAEVDYWKLREENGWLPDLDELKRLVRPNTKLICINNANNPTGALMDRAFLEEIVEIAKSVDAYV 189 (373)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 89985779999998398765407672259887999999618878769997999798897788999999998754178599
Q ss_pred EECCCC
Q ss_conf 406851
Q gi|254781050|r 125 IGPNCP 130 (300)
Q Consensus 125 iGPNc~ 130 (300)
|==.+-
T Consensus 190 isDEiY 195 (373)
T PRK07324 190 LSDEVY 195 (373)
T ss_pred EECCCC
T ss_conf 812554
No 83
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=88.97 E-value=1.6 Score=23.65 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCCCCEEEEEEE
Q ss_conf 999999973998728899970
Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
.+.++.+.+||+.++|++-|+
T Consensus 42 ~~~~~~~~~d~~vrvvVltg~ 62 (260)
T PRK06143 42 TQALRWLAADPDVRVLVLRGA 62 (260)
T ss_pred HHHHHHHHHCCCCEEEEEECC
T ss_conf 999998853899559999658
No 84
>PRK13117 consensus
Probab=88.48 E-value=1.4 Score=24.03 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 8899998539958998058846888999999840177189
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300)
.-+.+|.++|+..+++. ..|.....++.+.++++|+..
T Consensus 113 ~F~~~~~~aGvdGvIip--DLP~eE~~~~~~~~~~~gl~~ 150 (268)
T PRK13117 113 NFYARCAEAGVDSVLIA--DVPVEESAPFRQAAKKHGIAP 150 (268)
T ss_pred HHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHCCCCE
T ss_conf 99999997698779857--999788589999998679837
No 85
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=88.08 E-value=2.2 Score=22.72 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=25.3
Q ss_pred HCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 73998728899970-587248999999998642267552689984301
Q gi|254781050|r 201 LADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 201 ~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300)
.-.|+++..+|+.| ++... ++..+.+...+....-.-|-+++-|+.
T Consensus 200 ~~~P~~~~~ILfLEd~~~~~-~~idR~L~qL~~~gil~~v~gii~G~f 246 (313)
T COG1619 200 PYMPDIEGKILFLEDVNEKP-YRIDRMLLQLKLAGILEKVSGIILGRF 246 (313)
T ss_pred CCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHHCCHHHCCEEEEECC
T ss_conf 55427768689998489887-789999999987085845858998347
No 86
>PRK05764 aspartate aminotransferase; Provisional
Probab=87.88 E-value=1.5 Score=23.89 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204------567889999853995899805884------68889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
.-|.|.+-..+... ...-++.||-. .-.+.+++++...+|.+++.+-+= +..+..+|.++|+++++
T Consensus 121 ~~P~Y~~y~~~~~~--~g~~~v~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~v~s~~~l~~l~~~a~~~~i 198 (389)
T PRK05764 121 PAPYWVSYPEMVKL--AGGKPVFVPTGEENGFKLTPEQLEAAITPKTKALILNSPSNPTGAVYSKEELEAIADVAVEHDI 198 (389)
T ss_pred CCCCCHHHHHHHHH--CCCEEEEECCCHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 57862458999996--4986555043622087689999998638466499988998998867577999999999886353
Q ss_pred EEEECCCCEE
Q ss_conf 8940685101
Q gi|254781050|r 123 RLIGPNCPGI 132 (300)
Q Consensus 123 riiGPNc~Gi 132 (300)
.||==.+-.-
T Consensus 199 ~ii~DEiY~~ 208 (389)
T PRK05764 199 WVLSDEIYEK 208 (389)
T ss_pred EEEEECCCCC
T ss_conf 2751013435
No 87
>PRK05617 enoyl-CoA hydratase; Provisional
Probab=87.80 E-value=2 Score=23.00 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=39.3
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC-CCHHHHHH
Q ss_conf 853995899805884688899999984017718940685101355510002001123577867999805-41478999
Q gi|254781050|r 91 IEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS-GTLTYEAV 167 (300)
Q Consensus 91 ~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS-G~l~~e~~ 167 (300)
+..--|.+|..-.|+..=.- ..++-....||.-+|+. +--| +.++|+.|.- |.-=+.||- |.++..+.
T Consensus 101 i~~~~KP~IA~i~G~~mGGG---~~Lal~~d~RIate~t~-famP-E~~iGl~Pd~----G~t~~L~rlpg~lG~yL~ 169 (356)
T PRK05617 101 IARYPKPYIALMDGIVMGGG---VGISAHGSHRIVTERTK-MAMP-ETGIGFFPDV----GGTYFLSRAPGALGRYLA 169 (356)
T ss_pred HHHCCCCEEEEEECEEEECH---HHHHHHCCEEEECCCCE-EECC-CCCCCCCCCC----CCEEEHHCCCCHHHHHHH
T ss_conf 99779998999516266448---99976087578526643-5155-3244757787----401332007438999999
No 88
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=87.77 E-value=2.3 Score=22.60 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHH---CCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 9999997---3998728899970-5872489999999986422675526899843015
Q gi|254781050|r 195 DVLELFL---ADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTA 248 (300)
Q Consensus 195 d~L~~~~---~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtA 248 (300)
++|..+. -.|+++--+|+.| ++. .-++.-+.+...+....=+-+-+++-|+..
T Consensus 177 ~~l~~l~GT~~~p~~~g~ILfLEd~~e-~~~~idR~L~~L~~aG~f~~~~gii~G~f~ 233 (282)
T cd07025 177 TVLASLLGTPYLPDTEGKILFLEDVGE-PPYRIDRMLTQLKLAGVLDKVAGIILGRFT 233 (282)
T ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 999976398767787781899980799-989999999999983975357089995687
No 89
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=87.70 E-value=2.4 Score=22.57 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 73999888843779999999862698189976589988687277457753140785035788636886212045678899
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
+||-+.|+ |..|+--+.+.++.+-.-.|.-.+|.|--+.. ...+.-++.|.+|+.+. +|+-+.+||.......+.
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~--~~~Ga~~a~s~~eaa~~--aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELL--AAAGATVAASPAEAAAE--ADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--HHCCCEECCCHHHHHHH--CCEEEEECCCHHHHHHHH
T ss_conf 90799857-35259999999977987899808856656899--97298003889999961--998999617989999998
Q ss_pred HH---HHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECCCCEEECCCCHHCCEE
Q ss_conf 99---853--99589980588468889999998401771894-068510135551000200
Q gi|254781050|r 89 ES---IEA--EIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPNCPGILTPDSCKIGIM 143 (300)
Q Consensus 89 Ea---~~a--gik~iviiteGip~~d~~~l~~~A~~~g~rii-GPNc~Gii~p~~~~lgi~ 143 (300)
.. +-. .-..++|-..-+.....+++.+.++++|.+.+ -|=+-|........+.+|
T Consensus 76 ~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtim 136 (286)
T COG2084 76 FGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIM 136 (286)
T ss_pred HCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCEEEE
T ss_conf 1853353337899789987899989999999999966986894676588312320716999
No 90
>PRK06108 aspartate aminotransferase; Provisional
Probab=87.61 E-value=1.6 Score=23.66 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH-------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCC
Q ss_conf 775314078503578863688621204-------567889999853995899805884------6888999999840177
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS-------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSS 121 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~-------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g 121 (300)
.-|.|.+-..+.+. ...-+++||-. .-.+.+++++....|.+++.+-+= +..+..+|.++|++++
T Consensus 114 ~~P~Y~~~~~~~~~--~g~~~~~vpl~~~~~~~~~d~~~le~~~~~~~k~iil~~P~NPtG~v~s~e~l~~l~~la~~~~ 191 (382)
T PRK06108 114 VTPAWPNLVAAPKI--LGARVVCVPLQYGGGGWQLDVDRLLAAITPRTRALFINSPNNPTGWTASRDDQQAILAHCRRHG 191 (382)
T ss_pred CCCCCCCHHHHHHH--CCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCC
T ss_conf 16878656999997--3882785345666788667999999645756649998899699662044788999999876269
Q ss_pred CEEEECCCCE
Q ss_conf 1894068510
Q gi|254781050|r 122 SRLIGPNCPG 131 (300)
Q Consensus 122 ~riiGPNc~G 131 (300)
+.||==.+-.
T Consensus 192 v~iisDEiY~ 201 (382)
T PRK06108 192 LWIVADEVYE 201 (382)
T ss_pred CEEECHHHHH
T ss_conf 7535334333
No 91
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=87.47 E-value=1.9 Score=23.16 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH-------HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 7531407850357886368862120-------4567889999853995899805884------68889999998401771
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP-------SGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~-------~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
-|.|.+-...+.- +...++.||- ..-.+.+.+++....|++++.+-+= +..+..++.++|+++++
T Consensus 120 ~P~Y~~y~~~~~~--~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~PnNPTGav~~~~~l~~i~~~a~~~~i 197 (393)
T COG0436 120 DPGYPSYEAAVKL--AGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197 (393)
T ss_pred CCCCCCHHHHHHH--CCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 8998255999987--79979872166665587479999986477464599997999966778899999999999998792
Q ss_pred EEEECCC
Q ss_conf 8940685
Q gi|254781050|r 123 RLIGPNC 129 (300)
Q Consensus 123 riiGPNc 129 (300)
.||==-+
T Consensus 198 ~ii~DE~ 204 (393)
T COG0436 198 IIISDEI 204 (393)
T ss_pred EEEEECC
T ss_conf 9999636
No 92
>PRK05942 aspartate aminotransferase; Provisional
Probab=87.41 E-value=2.4 Score=22.46 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204----5--67889999853995899805884------68889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
.-|.|..-.......+.. ++.||-. + -.+++.+++....|.+++.+-+= +..+..+|.++|+++++
T Consensus 127 ~~P~Yp~y~~~~~~~g~~--~~~v~l~~~~~~~~d~~~l~~~i~~~tk~iil~~P~NPTG~v~~~e~l~~i~~~a~~~~i 204 (394)
T PRK05942 127 PSPAYPAHFRGPLIAGAQ--IYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEI 204 (394)
T ss_pred CCCCCHHHHHHHHHCCCE--EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHCCCC
T ss_conf 888867689999985998--999970587688779999998611267089993898810122019999999998851786
Q ss_pred EEEECCCCEEE
Q ss_conf 89406851013
Q gi|254781050|r 123 RLIGPNCPGIL 133 (300)
Q Consensus 123 riiGPNc~Gii 133 (300)
.||==.+-.-+
T Consensus 205 ~vIsDEiY~~l 215 (394)
T PRK05942 205 LLVHDLCYAEL 215 (394)
T ss_pred EEEECCCCCCE
T ss_conf 79703741002
No 93
>PRK09276 aspartate aminotransferase; Provisional
Probab=87.38 E-value=2.5 Score=22.45 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=65.3
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204----5--67889999853995899805884------68889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
.-|.|..-..+... ....++.+|-. + -.+.+.+++....|.+++.+-+= +..+..+|.++|+++++
T Consensus 123 ~~P~Y~~y~~~~~~--~g~~~v~vp~~~~~~~~~d~~~l~~~~~~~~k~iil~~P~NPTG~v~s~~~l~~l~~la~~~~i 200 (385)
T PRK09276 123 PDPGYPVYAIGTIF--AGGEPYFMPLKEENGFLPDLDAIPEDVARKAKLMFINYPNNPTGAVADLEFFEKVVDFAKKYDI 200 (385)
T ss_pred CCCCCCHHHHHHHH--CCCEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 88866205999998--6997850686666798579999997510167299989998985511118899999876325575
Q ss_pred EEEECCCCEEEC------------CCCHHCCE---ECCCCC-CCC-CEEEEEECCCHHHHH
Q ss_conf 894068510135------------55100020---011235-778-679998054147899
Q gi|254781050|r 123 RLIGPNCPGILT------------PDSCKIGI---MPGSIF-RKG-SVGILSRSGTLTYEA 166 (300)
Q Consensus 123 riiGPNc~Gii~------------p~~~~lgi---~p~~~~-~pG-~VgivSqSG~l~~e~ 166 (300)
.||=-.+-.-+. |+.....+ ..++.| -|| ++|.+..+-.+...+
T Consensus 201 ~ii~DEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RvG~~~~~~~~~~~l 261 (385)
T PRK09276 201 IVCHDNAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGL 261 (385)
T ss_pred EEEEHHHHHHHCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 6975444222103888887765534542443030465455688762079997599999999
No 94
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=87.31 E-value=2.5 Score=22.43 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=48.2
Q ss_pred HHHHHHHCCC------CCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCC
Q ss_conf 9999997399------8728899970-58724899999999864226755268998430157655322001122488889
Q gi|254781050|r 195 DVLELFLADE------ATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGG 267 (300)
Q Consensus 195 d~L~~~~~Dp------~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~ 267 (300)
++|..+.-.| +++-.+|+.| ++. .-++..+.+...+....-|-+-+++-|+...... .+ ....-
T Consensus 200 ~~l~~l~GT~y~p~~~~~~g~ILflEdv~e-~~~~idR~L~~L~~aG~f~~~~Gii~G~f~~~~~----~~----~~~~~ 270 (308)
T cd07062 200 DTLLLLAGTPYMPDPYKLEGKILFLETSEL-SPATVERALRQLKLAGVFDKISGIIFGRPQDEED----KG----TEETY 270 (308)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC----CC----CCCCH
T ss_conf 999987189778861024695899981899-9999999999999839854670899933776767----78----65189
Q ss_pred HHHHHHHHHHCCCEECCCH
Q ss_conf 9999999998897578898
Q gi|254781050|r 268 AEDKINAMKEAGICIAPSP 286 (300)
Q Consensus 268 a~~k~~al~~aGv~v~~s~ 286 (300)
.+.-...+.+.+++++.++
T Consensus 271 ~~vi~~~~~~~~iPV~~~~ 289 (308)
T cd07062 271 EDILLEVLGDLDIPIVYDV 289 (308)
T ss_pred HHHHHHHHHCCCCCEEECC
T ss_conf 9999998633898489899
No 95
>PRK07550 hypothetical protein; Provisional
Probab=87.21 E-value=1.2 Score=24.54 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH------HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 753140785035788636886212045------67889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG------AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~------v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+.+. .....+.||-.. -.+++++++..+.|.+++.+-+= +..+..+|.++|+++++.
T Consensus 122 ~P~Y~~y~~~~~~--~G~~~~~vp~~~~~~~~~d~~~le~~~~~~tk~iil~~P~NPtG~v~s~e~l~~l~~la~~~~~~ 199 (387)
T PRK07550 122 TPWYFNHKMWLDM--LGIRAVLVPLDTGPGLLPDPEAAAALITPRTRAIVLVTPNNPTGVVYPPELLHELYDLARRRGLA 199 (387)
T ss_pred CCCCCCHHHHHHH--CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 7967537999997--69989734777567987799999975565783770389969988510779853465430331589
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 200 iI~DEiY~ 207 (387)
T PRK07550 200 LILDETYR 207 (387)
T ss_pred EEECCCHH
T ss_conf 99417578
No 96
>PRK08362 consensus
Probab=86.07 E-value=2.3 Score=22.60 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204------567889999853995899805884------68889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
.-|.|..-..+.... ...++.||-. .-.|.+.+++....|.+++.+-+= +..+..+|.++|+++++
T Consensus 117 ~~P~Y~~y~~~~~~~--g~~~v~vp~~~~~~~~~d~~~l~~~i~~~~k~iil~~P~NPtG~v~s~~~l~~i~~~a~~~~~ 194 (389)
T PRK08362 117 PSPMFVSYAPAVILA--GGKPVEVPTYEENEFRLNVDDLKKYVTEKTRALIINSPNNPTGSVLTKKDLEEIADFAVEHDL 194 (389)
T ss_pred ECCCCCCHHHHHHHC--CCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCE
T ss_conf 158654268999974--998999854577788769999997454468299984898984746319999999999875495
Q ss_pred EEEECCCCEE
Q ss_conf 8940685101
Q gi|254781050|r 123 RLIGPNCPGI 132 (300)
Q Consensus 123 riiGPNc~Gi 132 (300)
.||==.+-+-
T Consensus 195 ~ii~DEiY~~ 204 (389)
T PRK08362 195 MVISDEVYEH 204 (389)
T ss_pred EEEECCCHHH
T ss_conf 7981464564
No 97
>PRK08068 transaminase; Reviewed
Probab=86.06 E-value=2.9 Score=22.00 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=52.1
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----HH--HHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204----56--788999985399589980588------4688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----GA--GDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~v--~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300)
-|.|..-..+.+. .+.-++.+|-. +. .+++.+++....|.+++.+-+ ++..+.++|.++|+++++.
T Consensus 125 ~P~Yp~y~~~~~~--~g~~~~~vpl~~~~~~~~d~e~l~~~i~~~tk~iil~~P~NPTG~v~~~~~l~~l~~la~~~~i~ 202 (389)
T PRK08068 125 DPGYPDYLSGVAL--ARAQFETMPLIAENNFLPDYEKIPESVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIG 202 (389)
T ss_pred CCCCCCHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCHHCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHCCCEE
T ss_conf 7889864999997--18756899636667986899999874310465999889979846120599999999987107779
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-+-+
T Consensus 203 visDEiY~~l 212 (389)
T PRK08068 203 VVHDFAYGAI 212 (389)
T ss_pred EEECCCCCCE
T ss_conf 9962652111
No 98
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=85.96 E-value=2.9 Score=21.97 Aligned_cols=206 Identities=14% Similarity=0.177 Sum_probs=86.2
Q ss_pred HHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-------------HHHHHHHHHCCC-----CEE
Q ss_conf 85035788636886212045678899998539958998058846888-------------999999840177-----189
Q gi|254781050|r 63 AEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLD-------------MVRVKARLEKSS-----SRL 124 (300)
Q Consensus 63 ~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d-------------~~~l~~~A~~~g-----~ri 124 (300)
.+..++..+|+-|-.-|.+ +.....+-....++.+.++|+-. .|. ..++++.+.+.| +.+
T Consensus 97 ~~~L~~~kPDvII~T~P~~-~~s~lk~~~~~~iP~~tViTD~~-~H~~W~~~~~D~y~Va~~~~~~~l~~~Gi~~~kI~v 174 (391)
T PRK13608 97 INLLIKEKPDLILLTFPTP-VMSVLTEQFNINIPVATVMTDYR-LHKNWITPYSTRYYVATKETKQDFIDVGIDPSTVKV 174 (391)
T ss_pred HHHHHHHCCCEEEECCHHH-HHHHHHHHCCCCCCEEEEECCHH-HHHHHCCCCCCEEEECCHHHHHHHHHCCCCHHHEEE
T ss_conf 9999984929999998289-99999982499998899958713-323036899997996999999999984999768899
Q ss_pred EECCC-CEEECC-CC----HHCCEECCCCCCCCCEEEEEECCCHH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCH
Q ss_conf 40685-101355-51----00020011235778679998054147-----899999997199516764055674467899
Q gi|254781050|r 125 IGPNC-PGILTP-DS----CKIGIMPGSIFRKGSVGILSRSGTLT-----YEAVFQTSQEGLGQSTAVGIGGDPVKGTEF 193 (300)
Q Consensus 125 iGPNc-~Gii~p-~~----~~lgi~p~~~~~pG~VgivSqSG~l~-----~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~ 193 (300)
.|.=- +-+-.+ ++ .+.|+.| .-++-+++ +|+++ .++...+....-....+|=.|.+. ..
T Consensus 175 tGIPV~~~F~~~~~~~~~~~~~~l~~-----~~~~iLv~-gG~~G~~~~~~~~i~~ll~~~~~~qivvvcGrN~----~L 244 (391)
T PRK13608 175 TGIPIDNKFETPINQKQWLIDNNLDP-----DKQTILMS-AGAFGVSKGFDTMITDILAKSANAQVVMICGKSK----EL 244 (391)
T ss_pred EEEECCHHHCCCCCHHHHHHHCCCCC-----CCCEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH----HH
T ss_conf 83435867737556789999718997-----77689996-8863102469999999971599965999908999----99
Q ss_pred HHHHHH-HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCCC----CCCCCEEEEECCCCCCC
Q ss_conf 999999-9739987288999705872489999999986422675526899843-01576----55322001122488889
Q gi|254781050|r 194 IDVLEL-FLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAG-KTAPP----GRTMGHAGAVISGGKGG 267 (300)
Q Consensus 194 ~d~L~~-~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~G-rtAp~----g~~~gHaGAi~~~~~g~ 267 (300)
.+-|+. +.+.|+.+ ++ |.- .+..++++++- ++.-|+| .|..+ +.-|=.-..+- |-
T Consensus 245 ~~~L~~~~~~~~~v~---vl----G~t-~~m~~lM~asD-------llITKpGGlT~sEAla~~lPmii~~piP----GQ 305 (391)
T PRK13608 245 KRSLTAKFKSNENVL---IL----GYT-KHMNEWMASSQ-------LMITKPGGITITEGFARCIPMIFLNPAP----GQ 305 (391)
T ss_pred HHHHHHHHCCCCCEE---EE----CCC-CCHHHHHHHCC-------EEEECCCHHHHHHHHHHCCCEEECCCCC----CC
T ss_conf 999997624599769---97----070-51999998652-------9996786679999999589989757999----74
Q ss_pred HHHHHHHHHHCCC-EECCCHHHHHHHHHHHHHC
Q ss_conf 9999999998897-5788989999999999843
Q gi|254781050|r 268 AEDKINAMKEAGI-CIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 268 a~~k~~al~~aGv-~v~~s~~el~~~l~~~l~~ 299 (300)
.+.-..-|.+.|+ ..+++++|+.+.+.+++.+
T Consensus 306 Ee~Na~~l~~~G~a~~~~~~~~~~~~v~~l~~~ 338 (391)
T PRK13608 306 ELENALYFEEKGFGKIADTPEEAIKIVASLTNG 338 (391)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC
T ss_conf 466799999689768859999999999998559
No 99
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=85.42 E-value=1.6 Score=23.70 Aligned_cols=128 Identities=22% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-CCCCEEE-ECCCCEEECCCCHHCCEECCCC
Q ss_conf 8636886212045678899998539958998058846888999999840-1771894-0685101355510002001123
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLE-KSSSRLI-GPNCPGILTPDSCKIGIMPGSI 147 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~-~~g~rii-GPNc~Gii~p~~~~lgi~p~~~ 147 (300)
++|+=|-.||..|=--++|=.+|+.--..-.=+=|+..+...++-++.+ .||+.|+ ||--.|=-
T Consensus 194 ~~DiRVSt~Pt~fGERvVMRLLDK~~~~l~L~~LGm~~~~l~~~~~li~rpHGIiLVTGPTGSGKt-------------- 259 (495)
T TIGR02533 194 DIDIRVSTVPTSFGERVVMRLLDKDAVRLDLEALGMSPELLSSLERLIKRPHGIILVTGPTGSGKT-------------- 259 (495)
T ss_pred EEEEEEEECCCCCCCEEEHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHH--------------
T ss_conf 466788530589971000001120477775886488888999999997188961884177898525--------------
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCE--------EEEEECCC---CCCCCCCHHHHHHHH-HCCCCCCEEEEEEEC
Q ss_conf 577867999805414789999999719951--------67640556---744678999999999-739987288999705
Q gi|254781050|r 148 FRKGSVGILSRSGTLTYEAVFQTSQEGLGQ--------STAVGIGG---DPVKGTEFIDVLELF-LADEATESIVMVGEI 215 (300)
Q Consensus 148 ~~pG~VgivSqSG~l~~e~~~~~~~~g~G~--------S~~VsiG~---D~~~G~~~~d~L~~~-~~Dp~T~~Ivl~gEi 215 (300)
|=.|..++.+.....=+ +..=|||= .+=+|++|+.-|..+ .+||+ |+|+|||
T Consensus 260 -------------TTLYaaL~~LN~~~~NIlTvEDPVEY~i~GIgQ~Qvn~kIglTFA~GLRaILRQDPD---iiMvGEI 323 (495)
T TIGR02533 260 -------------TTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPD---IIMVGEI 323 (495)
T ss_pred -------------HHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCC---EEEEECC
T ss_conf -------------889999986358997156865782476248763651465430388887886427998---8998231
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 87248999999998
Q gi|254781050|r 216 GGSAEEEAAQFLKD 229 (300)
Q Consensus 216 GG~~E~~aa~fi~~ 229 (300)
- +.|-|.=.+++
T Consensus 324 R--D~ETA~IAiQA 335 (495)
T TIGR02533 324 R--DLETAQIAIQA 335 (495)
T ss_pred C--CHHHHHHHHHH
T ss_conf 6--06899999987
No 100
>PRK12414 putative aminotransferase; Provisional
Probab=85.36 E-value=3.1 Score=21.79 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=64.2
Q ss_pred EECCCEEEEE-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH---
Q ss_conf 7179739998-888437799999998626981899765899886872774577531407850357886368862120---
Q gi|254781050|r 5 VDKNTKVLVQ-GLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP--- 80 (300)
Q Consensus 5 ~~~~t~vivq-Gitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~--- 80 (300)
+|.++.|+|- | ++++-+++-+.+---|-.|+ ..-|.|.+-..+.+-.++ .++.||-
T Consensus 87 ~dp~~~i~vt~G--~~~al~~~~~al~~pGD~Vl----------------v~~P~y~~y~~~~~~~Ga--~~v~v~~~~~ 146 (384)
T PRK12414 87 YDPDTEVTVIAS--ASEGLYAAISALVHPGDEVI----------------YFEPSFDSYAPIVRLQGA--TPVAIKLSPE 146 (384)
T ss_pred CCCCCEEEECCC--HHHHHHHHHHHHCCCCCEEE----------------EECCCCHHHHHHHHHCCC--EEEEEECCCC
T ss_conf 998880998479--89999999999679999899----------------908970656999998599--8999866855
Q ss_pred HH--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 45--67889999853995899805884------6888999999840177189406851013
Q gi|254781050|r 81 SG--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 81 ~~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
.+ -.+.+.+++....|.+++.+-+= +..+..+|.++|+++++.||==.+-.-+
T Consensus 147 ~~~~d~~~l~~~~~~~tk~iil~~P~NPTG~v~s~e~l~~l~~la~~~~i~ii~DE~Y~~l 207 (384)
T PRK12414 147 HFRVNWDEVAAAITPRTRMIIVNTPHNPTATVFSEADLARLAQLTRGTDIVVLSDEVYEHV 207 (384)
T ss_pred CCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHE
T ss_conf 6888999999627778669997999898771375666999999875158899966632330
No 101
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=85.18 E-value=3.2 Score=21.74 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=57.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEECCC------CCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 39998888437799999998626981899765-89988687277------457753140785035788636886212045
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH-PKKGSTYWTGG------NVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~-Pgkgg~~~~g~------~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
||.|-|.||.-|.--.+.+...-.-++++-+. ....|+.+.-. ..+++ +....+. ...++|+.+.+.|...
T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~Dvvf~alp~~~ 78 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLL-LEDVDPE-DLKDVDIVFFALPAGV 78 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCE-EEECCHH-HHCCCCEEEECCCHHH
T ss_conf 9999893619999999999718875513788505658960144165424666644-7758977-8538989998387689
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67889999853995899805884
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGI 105 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGi 105 (300)
..+.+.+..++|++ ++=.+.-+
T Consensus 79 s~~~~~~~~~~g~~-VIDlS~df 100 (121)
T pfam01118 79 SKELAPKLLEAGAV-VIDLSSAF 100 (121)
T ss_pred HHHHHHHHHHCCCE-EEECCHHH
T ss_conf 99999998715989-98785675
No 102
>KOG1203 consensus
Probab=85.12 E-value=3.2 Score=21.72 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 797399988884377999999986269818997658998
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG 45 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg 45 (300)
+.+.|+|-|.||+-|.+-.+.+++. |-++-++|-.-..
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd~~~ 115 (411)
T KOG1203 78 KPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRDEQK 115 (411)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHC-CCEEEEECCCHHH
T ss_conf 8874999558873639999999977-9702342157365
No 103
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.12 E-value=3.2 Score=21.72 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=63.5
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCEEECCCCCCCCCCCCHH--HHCCCCCCCEEEEECCHH
Q ss_conf 1797399988884377999999986269818997658--998868727745775314078--503578863688621204
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP--KKGSTYWTGGNVNVPVFTTVA--EAKERTAANASVIYVPPS 81 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P--gkgg~~~~g~~~~iPvy~sv~--ea~~~~~~D~avI~VP~~ 81 (300)
+..+|+++.|. |..|....+.+..-....+||.+.+ .|-|++..| +|||.+.. +.+++++++..+|+.|.-
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~G----v~V~g~~~i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRG----VPVLGRIEIERVVEELGIQLILIAIPSA 188 (588)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCEEEC----EEEECHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 67886699937-658999999997489961599988873651887702----2642314799999971876699964878
Q ss_pred ---HHHHHHHHHHHCCCCEEE
Q ss_conf ---567889999853995899
Q gi|254781050|r 82 ---GAGDAIIESIEAEIPLIV 99 (300)
Q Consensus 82 ---~v~dai~Ea~~agik~iv 99 (300)
...+...+|...|++.-+
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~~ 209 (588)
T COG1086 189 SQEERRRILLRLARTGIAVRI 209 (588)
T ss_pred CHHHHHHHHHHHHHCCCCEEE
T ss_conf 899999999998755970785
No 104
>PRK07683 aminotransferase A; Validated
Probab=84.96 E-value=2.6 Score=22.29 Aligned_cols=77 Identities=9% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH-----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 775314078503578863688621204-----567889999853995899805884------688899999984017718
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS-----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~-----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
.-|.|..-..+.+.. ..-.+.+|-. .-.+.+++++...+|.+++.+-+= +..+..+|.++|+++++.
T Consensus 119 ~~P~Y~~~~~~~~~~--g~~~v~v~~~~~~~~~d~~~le~~~~~~~k~iil~~P~NPtG~v~s~e~l~~i~~la~~~~i~ 196 (387)
T PRK07683 119 PAPIYPGYEPIIRLC--GATPVFIDTRETGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELKDIANVLKDKNIF 196 (387)
T ss_pred CCCCCCCHHHHHHHC--CCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 378766569999970--872353687867887899999973552575786479959897887899999999976136944
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-.-+
T Consensus 197 ii~DEiY~~l 206 (387)
T PRK07683 197 VLSDEIYSEL 206 (387)
T ss_pred EECCCCHHHH
T ss_conf 7546513554
No 105
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=84.64 E-value=2 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=11.9
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+..+|+ =+..| ..++|+.|
T Consensus 110 a~~~D~~ias~~a-~f~~p-e~~~Gl~p 135 (254)
T PRK08252 110 ALACDLIVAARDA-KFGLP-EVKRGLVA 135 (254)
T ss_pred HHHCCEEEECCCC-CCCCC-CCEECCCC
T ss_conf 9747899852444-21276-01147688
No 106
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=84.52 E-value=2.7 Score=22.22 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=28.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE-ECCC--CCCCCCCHHHH
Q ss_conf 78679998054147899999997199516764-0556--74467899999
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV-GIGG--DPVKGTEFIDV 196 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V-siG~--D~~~G~~~~d~ 196 (300)
.|.--+||=||+.++..+..+.+.|.=.-++- |-|. |+ .|.|..|+
T Consensus 251 ~gk~vaIqGfGNVg~~aA~kl~e~GakVVavSDs~G~Iy~~-~Gid~e~l 299 (469)
T PTZ00079 251 EKKTAVVSGSGNVAQYCVEKLLQLGAKVLTLSDSNGYIVEP-NGFTEEKL 299 (469)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEECC-CCCCHHHH
T ss_conf 78889997667389999999997699899998389439888-98899999
No 107
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.32 E-value=3.5 Score=21.49 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=72.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCC-CCCEEEEECCHHHHHHHH
Q ss_conf 399988884377999999986269818-997658998868727745775314078503578-863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERT-AANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP~~~v~dai 87 (300)
||=+.|+ |.-|.--+.++.+- |-.| |.-.+|.+--.. . ..+...++|++|..+.- .++.-++.||.....|.+
T Consensus 2 kIGfIGL-G~MG~~mA~nL~~~-G~~V~v~dr~~~~~~~~-~--~~ga~~~~s~~e~~~~~d~prvI~l~lp~~~~Vd~V 76 (301)
T PRK09599 2 QLGMIGL-GRMGGNMARRLLRG-GHEVVGYDRNPEAVEAL-A--AEGATGAASLEELVAKLPAPRVVWLMVPAGEITDST 76 (301)
T ss_pred EEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHH-H--HCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf 7999834-58799999999968-99079976999999999-9--859943299999997078887799981797038999
Q ss_pred HHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 999853995--899805884688899999984017718940685101
Q gi|254781050|r 88 IESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 88 ~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
.+.+....+ .++|-.......|.+++.+.++++|++.++---.|-
T Consensus 77 i~~l~~~l~~g~iiID~sts~~~~t~~~a~~l~~~gi~flDapVSGG 123 (301)
T PRK09599 77 IDELAPLLEAGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 99999627899888708999838899999999985994544766788
No 108
>PRK09414 glutamate dehydrogenase; Provisional
Probab=84.21 E-value=3.5 Score=21.46 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC---C---CCCCCCCHHHH
Q ss_conf 78679998054147899999997199516764055---6---74467899999
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG---G---DPVKGTEFIDV 196 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG---~---D~~~G~~~~d~ 196 (300)
+|.--.||=||+.++..+..+.+.|- .+|++. | |+ .|.|..|+
T Consensus 228 ~gk~v~IqGfGNVg~~aA~~l~e~Ga---kvVavSDs~G~Iy~~-~Gid~~~L 276 (446)
T PRK09414 228 EGKTVVVSGSGNVAIYAIEKAMELGA---KVVTCSDSSGYVYDE-DGITPEKL 276 (446)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCEEECC-CCCCHHHH
T ss_conf 78879997777799999999997699---799998378607889-99899999
No 109
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=84.19 E-value=3.5 Score=21.46 Aligned_cols=13 Identities=8% Similarity=0.061 Sum_probs=6.0
Q ss_pred HHCCCCEEEECCC
Q ss_conf 4017718940685
Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300)
Q Consensus 117 A~~~g~riiGPNc 129 (300)
+-...+|+..+++
T Consensus 113 al~cD~~ia~~~a 125 (248)
T PRK06023 113 HLHCDLTFATPRS 125 (248)
T ss_pred HHCCCEEEECCCC
T ss_conf 7234645634786
No 110
>PRK07212 consensus
Probab=83.83 E-value=2.4 Score=22.50 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=50.0
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH----HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEE
Q ss_conf 7531407850357886368862120----4567889999853995899805884------68889999998401771894
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP----SGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~----~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~rii 125 (300)
-|.|..-..+.+.. ..-++.||- .+..+.+.+++....|.+++.+-+= +..+..+|.++|+++++.||
T Consensus 122 ~P~Y~~y~~~~~~~--g~~~v~vpl~~~~~~~~~~l~~~i~~~~k~i~l~~P~NPtG~v~s~~~l~~l~~la~~~~~~ii 199 (378)
T PRK07212 122 DPAWVSYEACIKFA--GGKPVWVPLNPEDFQLPDDLAEAITDKTKLIVVNSPSNPTGAVFGKESLQGVADLAVDHDLYVL 199 (378)
T ss_pred CCCCCCHHHHHHHC--CCEEEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEC
T ss_conf 79634256899971--9969998355567852899998566578299988997998988471768899997774245013
Q ss_pred ECCCC
Q ss_conf 06851
Q gi|254781050|r 126 GPNCP 130 (300)
Q Consensus 126 GPNc~ 130 (300)
==..-
T Consensus 200 ~DEiY 204 (378)
T PRK07212 200 SDEIY 204 (378)
T ss_pred CCCCH
T ss_conf 30011
No 111
>pfam02016 Peptidase_S66 LD-carboxypeptidase. Muramoyl-tetrapeptide carboxypeptidase hydrolyses a peptide bond between a di-basic amino acid and the C-terminal D-alanine in the tetrapeptide moiety in peptidoglycan. This cleaves the bond between an L- and a D-amino acid. The function of this activity is in murein recycling. This family also includes the microcin c7 self-immunity protein. This family corresponds to Merops family S66.
Probab=83.80 E-value=3.6 Score=21.35 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCC
Q ss_conf 3998728899970-5872489999999986422675526899843015765532200112248888999-9999999889
Q gi|254781050|r 202 ADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE-DKINAMKEAG 279 (300)
Q Consensus 202 ~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~-~k~~al~~aG 279 (300)
-.|+++-.+|+.| ++- .-++..+.+...+....-+-+-+++-|+....... . ....+.+ ...+.+.+.+
T Consensus 184 y~p~~~g~ILflEdv~e-~~y~idR~L~~L~~aG~f~~~~Gii~G~f~~~~~~------~--~~~~~~~~vl~~~~~~~~ 254 (281)
T pfam02016 184 YLPDTDGKILFLEDVGE-APYRIDRMLTQLKLAGILDKVAGIILGRFTDCDDD------E--DYGDTLEEVLREVLGDLG 254 (281)
T ss_pred CCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC------C--CCCHHHHHHHHHHHHHCC
T ss_conf 56687883899980799-99999999999998197445728999347778898------6--534429999999875279
Q ss_pred CEECCCH
Q ss_conf 7578898
Q gi|254781050|r 280 ICIAPSP 286 (300)
Q Consensus 280 v~v~~s~ 286 (300)
+++..++
T Consensus 255 iPv~~~~ 261 (281)
T pfam02016 255 IPVLYGL 261 (281)
T ss_pred CCEEECC
T ss_conf 8589899
No 112
>PRK08912 hypothetical protein; Provisional
Probab=83.69 E-value=3.1 Score=21.84 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH-----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 75314078503578863688621204-----567889999853995899805884------6888999999840177189
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS-----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~-----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
-|.|.+-..+.+..+ .-+++||-. .-.+++.+++....|.+++.+-+= +..+..+|.++|+++++.|
T Consensus 118 ~P~y~~y~~~~~~~G--~~~~~v~~~~~~~~~d~~~l~~~~~~~tk~iil~~P~NPTG~v~s~e~l~~l~~~a~~~~i~v 195 (387)
T PRK08912 118 QPLYDSYLPIIRRAG--GVPRLVRLEPPHWRLPEAALAAAFSPRTKAVLLNNPLNPAGKVFPREDLALLAEFCQRHDAVA 195 (387)
T ss_pred CCCCHHHHHHHHHCC--CEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 880811799999729--889975655877788999998527888669998999898885686999999999886579799
Q ss_pred EECCCCEEECCC-C---HHC---C-----E---ECCCCCC-CC-CEEEEEECCCHHHHHHH
Q ss_conf 406851013555-1---000---2-----0---0112357-78-67999805414789999
Q gi|254781050|r 125 IGPNCPGILTPD-S---CKI---G-----I---MPGSIFR-KG-SVGILSRSGTLTYEAVF 168 (300)
Q Consensus 125 iGPNc~Gii~p~-~---~~l---g-----i---~p~~~~~-pG-~VgivSqSG~l~~e~~~ 168 (300)
|==++-.-+.-+ . ..+ + + ..++.|. || ++|.+.-+..+...+..
T Consensus 196 i~DEiY~~l~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~m~G~RiG~~~~~~~li~~l~~ 256 (387)
T PRK08912 196 ICDEVWEHVVFDGRRHIPLMALPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAK 256 (387)
T ss_pred EECCCHHHEEECCCCCCHHHCCCCCCCCEEEECCCCCEECCCCCCEEEEEECHHHHHHHHH
T ss_conf 8026523315678654044406676673699856777520553327999839999999999
No 113
>PRK07367 consensus
Probab=83.30 E-value=3.8 Score=21.23 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=53.5
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-.++.+. .+..++.+|-. .-++.+.+++....|.+++.+-+= +..+.+++.++|+++++.
T Consensus 119 ~P~y~~y~~~~~~--~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~k~~il~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ 196 (385)
T PRK07367 119 APYWLSYPEMVKL--AGGTPVIVPTDAATGFKITPEQLRQAITPKTKLLVLNSPSNPTGMVYTPEEIAALAEVIVEHDLY 196 (385)
T ss_pred CCCCCCCHHHHHH--CCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 6987771999998--09857992136212767799999973786774999789979878566578888998888755869
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-.-+
T Consensus 197 iIsDEiY~~l 206 (385)
T PRK07367 197 VVSDEIYEKI 206 (385)
T ss_pred EEECCCCHHH
T ss_conf 9711321121
No 114
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=83.24 E-value=3.8 Score=21.21 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=76.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCC--EEEEECCCCC--CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 739998888437799999998626981--8997658998--868727745775314078503578863688621204567
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQ--VVGGIHPKKG--STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~--ivagV~Pgkg--g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
.||-+.|. |..|+..++.... +..+ .+..++-... -+...+ .+++++++.+.... .+|+-|=+.+...+.
T Consensus 3 ~rVgiiG~-GAIG~~Va~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~lla~-~pDlVvE~As~~Av~ 76 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLA-DAAQPCQLAALTRNAADLPPALAG---RVALLDGLPGLLAW-RPDLVVEAAGQQAIA 76 (267)
T ss_pred EEEEEECC-CHHHHHHHHHHHH-CCCCCEEEEEEECCHHHHHHHHCC---CCCCCCCHHHHHCC-CCCEEEECCCHHHHH
T ss_conf 17999851-6999999999861-777652899981533555555325---66545775777412-899999897989999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHHHCCCCEEEECC
Q ss_conf 889999853995899805884688-89999998401771894068
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVL-DMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~-d~~~l~~~A~~~g~riiGPN 128 (300)
+-...++++|...+++=..-+... ...+|.+.|+++|.|+.=|.
T Consensus 77 ~~a~~vL~~G~dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ips 121 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred HHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 999999975996999823784798899999999997798699747
No 115
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=83.19 E-value=3.9 Score=21.20 Aligned_cols=94 Identities=19% Similarity=0.149 Sum_probs=57.2
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHHHCCCCEEE-ECCCCEEECCCCHH--CCEECCCCCC
Q ss_conf 621204567889999853995899805---88468889999998401771894-06851013555100--0200112357
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCIT---EGIPVLDMVRVKARLEKSSSRLI-GPNCPGILTPDSCK--IGIMPGSIFR 149 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviit---eGip~~d~~~l~~~A~~~g~rii-GPNc~Gii~p~~~~--lgi~p~~~~~ 149 (300)
++|-+.--++-+.+..+.|+|.||+.- |.-.......+.+.|++.|+..+ =|=..|-+++.... ..++- -.
T Consensus 9 ~~vs~Qi~~~di~~la~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~---~~ 85 (110)
T pfam04273 9 LSVSPQIQPDDIAAAARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYRFIPVISGQITEADVEAFQRALA---AA 85 (110)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHH---HC
T ss_conf 757599899999999985983885338887778998889999999983997999644778989999999999998---58
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHC
Q ss_conf 786799980541478999999971
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQE 173 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~ 173 (300)
|++|=..+|||+=+. .+|.++++
T Consensus 86 ~~Pvl~~CrSG~Rs~-~lwala~a 108 (110)
T pfam04273 86 EGPVLAHCRSGTRAL-NLYALSQA 108 (110)
T ss_pred CCCEEEECCCCHHHH-HHHHHHHC
T ss_conf 998999889987799-99999855
No 116
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=82.90 E-value=3.5 Score=21.50 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=7.6
Q ss_pred CEEEEECCCEEEEECCC
Q ss_conf 95677179739998888
Q gi|254781050|r 1 MSILVDKNTKVLVQGLT 17 (300)
Q Consensus 1 msil~~~~t~vivqGit 17 (300)
|-|+++++-+|..-=+.
T Consensus 1 ~~V~~E~~g~v~~I~Ln 17 (251)
T TIGR03189 1 LKVWLERDGKLLRLRLA 17 (251)
T ss_pred CEEEEEEECCEEEEEEC
T ss_conf 98999998999999958
No 117
>PRK08069 consensus
Probab=82.86 E-value=3.3 Score=21.62 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+.+. ....++++|.. .-.+.+.+++....|.+++.+-+= +..+..+|.++|+++++.
T Consensus 121 ~P~Y~~y~~~~~~--~g~~~v~v~~~~~~~~~~d~~~l~~~i~~~~k~iil~~P~NPTG~v~s~e~l~~i~~la~~~~~~ 198 (390)
T PRK08069 121 TPYWVSYPEQVKL--AGGKPVYVEGLEDNDFKITAEQLEEAITEKTKAVIINSPSNPTGMIYTKEELAALGEVCLEHDIL 198 (390)
T ss_pred CCCCCCHHHHHHH--HCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEE
T ss_conf 6866427999998--18804871456667876799999985443685899889969868165506899999998756305
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-+-+
T Consensus 199 vi~DEiY~~l 208 (390)
T PRK08069 199 IVSDEIYEKL 208 (390)
T ss_pred EEEEHHHHHH
T ss_conf 9853323654
No 118
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=82.23 E-value=1.2 Score=24.54 Aligned_cols=137 Identities=21% Similarity=0.250 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-----------------------------CCCCEEEECCC
Q ss_conf 2045678899998539958998058846888999999840-----------------------------17718940685
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLE-----------------------------KSSSRLIGPNC 129 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~-----------------------------~~g~riiGPNc 129 (300)
|.+.|.||+.+|-+|||| +++||--..+-- .++|| .|.+|++=-..
T Consensus 467 PR~EV~~ai~~CR~AGIr-VImITGD~KeTA----~AicR~IG~lsSfTG~EF~~m~~~~~~~FSR~ePsHK~~lV~~~~ 541 (800)
T TIGR01116 467 PRPEVADAIEKCREAGIR-VIMITGDNKETA----EAICRRIGILSSFTGREFDEMGPKKALVFSRVEPSHKLRLVELQE 541 (800)
T ss_pred CCHHHHHHHHHHHHCCCE-EEEEECCCCHHH----HHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHCC
T ss_conf 816899999988737978-999847982468----999767501024200036500601466876058255787653115
Q ss_pred CEEECC--CCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHH---CCCCEEEEEECC--CCCCCCCCHHHHHHHHHC
Q ss_conf 101355--5100020011235778679998054147899999997---199516764055--674467899999999973
Q gi|254781050|r 130 PGILTP--DSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQ---EGLGQSTAVGIG--GDPVKGTEFIDVLELFLA 202 (300)
Q Consensus 130 ~Gii~p--~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~---~g~G~S~~VsiG--~D~~~G~~~~d~L~~~~~ 202 (300)
++-|.. |- |..-+-..++=+||+-==||| |++..+++ +..=|||+|.-= |-.+- .|+.+.++|+--
T Consensus 542 ~~~i~AMTGD---GVNDAPALK~AdIGIAMGSGT---eVAK~ASdmVLADDNFaTIV~AV~EGR~Iy-NNmKqFIRYmIS 614 (800)
T TIGR01116 542 QGQIVAMTGD---GVNDAPALKKADIGIAMGSGT---EVAKEASDMVLADDNFATIVKAVEEGRAIY-NNMKQFIRYMIS 614 (800)
T ss_pred CCEEEEECCC---CCCCCHHHCCCCCEEECCCCH---HHHHHHHHHCCCCCCHHHHHHHHCCCCHHH-HCCHHHHHHHHH
T ss_conf 6707873286---977724334443023458616---899998531002477254653310464133-123246566552
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 998728899970587248999999998642267552689
Q gi|254781050|r 203 DEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVG 241 (300)
Q Consensus 203 Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva 241 (300)
.+--|=++=|+.++--...--||-.
T Consensus 615 --------------SNIGEVv~IFlt~aLG~e~l~pvQL 639 (800)
T TIGR01116 615 --------------SNIGEVVSIFLTSALGIEGLIPVQL 639 (800)
T ss_pred --------------CCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf --------------2228999999999875310262032
No 119
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=82.22 E-value=3 Score=21.88 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=62.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCC--------CCEEECCC---CCCCCCCCCHHHHCCCCCCCEEEEE
Q ss_conf 39998888437799999998626981899-765899--------88687277---4577531407850357886368862
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKK--------GSTYWTGG---NVNVPVFTTVAEAKERTAANASVIY 77 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgk--------gg~~~~g~---~~~iPvy~sv~ea~~~~~~D~avI~ 77 (300)
||.|.|- |.-|+.-+....+- |.+|.- +-++.. -...+... ..++-++++..|+.+. +|+-++.
T Consensus 2 KI~IiGa-G~wGtAla~~la~n-~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~--adiIiia 77 (159)
T pfam01210 2 KIAVLGA-GSWGTALAKVLARN-GHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKG--ADIIVLA 77 (159)
T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHC--CCEEEEE
T ss_conf 8999996-99999999999987-998999990436667788669782104786455530542889999837--9899991
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 1204567889999853--99589980588468889999998401771894068510135
Q gi|254781050|r 78 VPPSGAGDAIIESIEA--EIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 78 VP~~~v~dai~Ea~~a--gik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
||..++.+.+.+.... .-..++..+-|+...-...+-++.++. ++.++.++++
T Consensus 78 vps~~~~~~~~~i~~~~~~~~~iv~~sKGie~~t~~~~s~i~~~~----~~~~~~~vls 132 (159)
T pfam01210 78 VPSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEIIEEE----LPINPIAVLS 132 (159)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHH----CCCCCEEEEE
T ss_conf 748899999999986557655688875144278875299999987----8998739995
No 120
>PRK08361 aspartate aminotransferase; Provisional
Probab=81.82 E-value=3.2 Score=21.68 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCC
Q ss_conf 775314078503578863688621204------56788999985399589980588------468889999998401771
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSS 122 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~ 122 (300)
.-|.|..-.+..+- .+.-++.||-. .-++.+++++....|.+++.+-+ ++..+..+|.++|+++++
T Consensus 122 ~~P~Y~~y~~~~~~--~g~~~~~vpl~~~~~~~~d~~~l~~~~~~~~k~ivl~~P~NPTG~v~s~e~l~~l~~la~~~~i 199 (390)
T PRK08361 122 PDPAFVCYVEDAKI--AEAKPIRIPLREENNFQPDPDELLEAITKRTRMIVINYPNNPTGAVLDKETAKAIADIAEDYNI 199 (390)
T ss_pred CCCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 47607779999998--2997999971587898779999997365467599988998975778667888899999986395
Q ss_pred EEEECCCCE
Q ss_conf 894068510
Q gi|254781050|r 123 RLIGPNCPG 131 (300)
Q Consensus 123 riiGPNc~G 131 (300)
.||==.+-.
T Consensus 200 ~ii~DE~Y~ 208 (390)
T PRK08361 200 YILSDEPYE 208 (390)
T ss_pred EECCHHHHH
T ss_conf 534706568
No 121
>pfam02646 RmuC RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.
Probab=81.37 E-value=1.4 Score=24.01 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 84377999999986269818997658998868727745775314078503578863688621204567889999853995
Q gi|254781050|r 17 TGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIP 96 (300)
Q Consensus 17 tg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik 96 (300)
.|+.|-+..++.++..|- .-|+.--.. .++..+....| |++-.. ++=-.|.+-+++-.++-.+..++.=.
T Consensus 67 rG~wGE~~Le~iLe~~gl--~~~~~y~~Q-~~~~~~~~~rp------D~vi~l-P~~~~i~IDSK~pl~~y~~~~~a~d~ 136 (301)
T pfam02646 67 RGNWGEVQLERILEDSGL--PEGLDYETQ-VSLSEGGRLRP------DFAIRL-PGGKLLVIDAKFPLEAYERLFDAEDD 136 (301)
T ss_pred CCHHHHHHHHHHHHHHCC--CCCCCHHEE-EEECCCCCCCC------EEEEEC-CCCCEEEEEHHHHHHHHHHHHHCCCH
T ss_conf 676899999999998089--854003034-22468998376------188986-89986777521148789998836684
Q ss_pred EE--EEECCCCCHHHH-HHHHHHHHCCCCEEEECCCCEEE---CCCC
Q ss_conf 89--980588468889-99999840177189406851013---5551
Q gi|254781050|r 97 LI--VCITEGIPVLDM-VRVKARLEKSSSRLIGPNCPGIL---TPDS 137 (300)
Q Consensus 97 ~i--viiteGip~~d~-~~l~~~A~~~g~riiGPNc~Gii---~p~~ 137 (300)
.- ...-++ ..+. ..+.+++++.=..+++++++-.+ .|.+
T Consensus 137 ~~~~~~~k~~--~~~vk~hi~~Ls~K~Y~~~~~~~t~dfviMFiP~E 181 (301)
T pfam02646 137 EDREAALKAL--VRSIRIHIKDLSEKDYWDLIGPETTDFVIMFLPTE 181 (301)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCH
T ss_conf 7899999999--99999999888605245506999866588882547
No 122
>PRK05957 aspartate aminotransferase; Provisional
Probab=81.18 E-value=4.6 Score=20.73 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 775314078503578863688621204----567889999853995899805884------6888999999840177189
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
.-|.|.+-..+....+. -++.||.. .-+|++++++....|.+++++-+= +..+..+|.++|+++++.|
T Consensus 119 ~~P~Y~~~~~~~~~~g~--~~v~vp~d~~~~~~~~~l~~~i~~~~k~iil~~P~NPTG~v~s~~~l~~l~~la~~~~~~i 196 (389)
T PRK05957 119 NTPYYFNHEMAITMAGC--QPVLVPTDENYQLRPEAIEAAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYH 196 (389)
T ss_pred CCCCCCCHHHHHHHCCC--CEEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 78877668999997499--3588657998897999999845102627861899899898876778999998760678189
Q ss_pred EECCCCEEECCCC--------H-----H-CCE-ECCCCCC-CC-CEEEEEECCCHHH
Q ss_conf 4068510135551--------0-----0-020-0112357-78-6799980541478
Q gi|254781050|r 125 IGPNCPGILTPDS--------C-----K-IGI-MPGSIFR-KG-SVGILSRSGTLTY 164 (300)
Q Consensus 125 iGPNc~Gii~p~~--------~-----~-lgi-~p~~~~~-pG-~VgivSqSG~l~~ 164 (300)
|==.+-.-+.-+. . + +-+ ..++.|. || ++|.+--+-.+..
T Consensus 197 i~DE~Y~~l~~~~~~~~s~~~~~~~~~~vI~i~S~SK~~~~~G~RvG~~v~~~~l~~ 253 (389)
T PRK05957 197 ISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLE 253 (389)
T ss_pred EECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHH
T ss_conf 989843213458866677654456345430134443124465643488983899999
No 123
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=80.92 E-value=4.7 Score=20.67 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999973998728899970
Q gi|254781050|r 195 DVLELFLADEATESIVMVGE 214 (300)
Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gE 214 (300)
+.|+.+.+||+.++|++-++
T Consensus 38 ~al~~~~~d~~vr~vvl~g~ 57 (260)
T PRK05809 38 TVLDDLENDDNVYAVILTGA 57 (260)
T ss_pred HHHHHHHHCCCCEEEEEECC
T ss_conf 99999986899569999668
No 124
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=80.86 E-value=4.7 Score=20.66 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=75.3
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCC--EEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 999805414789999999719951676405567446789999999997399872--889997058724899999999864
Q gi|254781050|r 154 GILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATE--SIVMVGEIGGSAEEEAAQFLKDEA 231 (300)
Q Consensus 154 givSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~--~Ivl~gEiGG~~E~~aa~fi~~~~ 231 (300)
-.|.|.=.++-=+.|-+-.-|.||-..|=-+ .|.--.-+|-++.+...-+ +|.||||= | -|.+|||+...
T Consensus 131 ~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA~----aG~GKSTLL~~i~~g~~ADv~V~ALIGER-G---REVREFiE~~l 202 (430)
T TIGR02546 131 QPIDQPLPTGVRAIDGLLTCGEGQRIGIFAG----AGVGKSTLLGMIARGASADVNVIALIGER-G---REVREFIEHLL 202 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC----CCCCHHHHHHHHHCCCCCCEEEEEECCCC-C---HHHHHHHHHCC
T ss_conf 5334651014667543440366530578708----88616689999861898878998602787-6---04788875207
Q ss_pred -HCCCCCCEEEE-EEEECCCCCCCCCEE-EEECCCCCCCHHHHHHHHHHCCC---EECCCHHHHHHHHHHH
Q ss_conf -22675526899-843015765532200-11224888899999999998897---5788989999999999
Q gi|254781050|r 232 -KRGRKKPIVGF-VAGKTAPPGRTMGHA-GAVISGGKGGAEDKINAMKEAGI---CIAPSPARIGRSLVEL 296 (300)
Q Consensus 232 -~~~~~KPVva~-~~GrtAp~g~~~gHa-GAi~~~~~g~a~~k~~al~~aGv---~v~~s~~el~~~l~~~ 296 (300)
.-+++|=||+. -+=|+|..=-+..|+ -||| +.||+=|- .+.||+.-+...++|+
T Consensus 203 g~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIA-----------EYFRDQGk~VlLmmDSlTRfARA~REi 262 (430)
T TIGR02546 203 GEEGRKRSVLVVSTSDRSSLERLKAAYTATAIA-----------EYFRDQGKRVLLMMDSLTRFARALREI 262 (430)
T ss_pred CHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH-----------HHHHHCCCEEEEEEECHHHHHHHHHHH
T ss_conf 830524248996079866799999987887999-----------999973990798840277999998778
No 125
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=80.85 E-value=4.7 Score=20.66 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=6.5
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 999997399872889997
Q gi|254781050|r 196 VLELFLADEATESIVMVG 213 (300)
Q Consensus 196 ~L~~~~~Dp~T~~Ivl~g 213 (300)
.|+.+++|++.++|++-+
T Consensus 43 ~l~~~~~d~~vr~vVl~g 60 (262)
T PRK06144 43 ICEEIAADPSIRAVVLRG 60 (262)
T ss_pred HHHHHHHCCCCEEEEEEC
T ss_conf 999986389914999957
No 126
>PRK13116 consensus
Probab=80.54 E-value=4.8 Score=20.59 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 6788999985399589980588468889999998401771894
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
...-+.+|.++|+..++| -..|.+...++.+.++++|+.+|
T Consensus 111 ~e~F~~~~~~aGvdGlIi--pDLP~eE~~~~~~~~~~~~i~~I 151 (278)
T PRK13116 111 LDRFYQEFAEAGADSILL--PDVPVREGAPFSAAAAAAGIDPI 151 (278)
T ss_pred HHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 999999997769758994--69997888999999986576669
No 127
>PRK08443 consensus
Probab=80.34 E-value=4.8 Score=20.59 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-.+.... ...-++++|.. .-.+.+.+++....|.+++.+-+= +..+..++.++|+++++.
T Consensus 120 ~P~Y~~y~~~~~~--~g~~~v~v~~~~~~~~~~d~~~l~~~i~~~~k~iil~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ 197 (388)
T PRK08443 120 SPYWVTYPELVKY--SGGVPVFIETDEENGFKITAEQLKKAITPKTKVLVLNTPSNPTGSVYSKEELEAIAKVLKGTDIW 197 (388)
T ss_pred CCCCCCHHHHHHH--HCCEEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 6874423999998--08847998655434867799999974787873999868989988476447899999986235756
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 198 ii~DE~Y~ 205 (388)
T PRK08443 198 VLSDEMYE 205 (388)
T ss_pred EECCHHHH
T ss_conf 74220124
No 128
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=80.30 E-value=4.9 Score=20.54 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=12.9
Q ss_pred HHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999999973998728899970
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
+.+.|+.+.+||++++|++-|+
T Consensus 43 l~~~l~~~~~d~~vr~vVl~g~ 64 (269)
T PRK06127 43 LPQALAAAEDDDAIRVVVLTGA 64 (269)
T ss_pred HHHHHHHHHHCCCEEEEEEECC
T ss_conf 9999999863899159999689
No 129
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=80.04 E-value=3.3 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCCCCEEEEEEE
Q ss_conf 999999973998728899970
Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
.+.++.+.+||+.++|++-|+
T Consensus 37 ~~al~~~~~D~~vrvvVLtG~ 57 (284)
T PRK08290 37 DAAFTRAEADDAVRVIVLAGA 57 (284)
T ss_pred HHHHHHHHHCCCCEEEEEECC
T ss_conf 999999964979179999669
No 130
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=80.04 E-value=5 Score=20.49 Aligned_cols=26 Identities=8% Similarity=0.291 Sum_probs=10.3
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+-.+|+ =+--| ..++|+.|
T Consensus 118 al~~D~~ia~~~a-~f~~p-e~~~Gl~p 143 (261)
T PRK05995 118 VAACDIAVAADHA-VFCLS-EVRLGLIP 143 (261)
T ss_pred HHHCCEEECCCCC-EEECH-HHHEEECC
T ss_conf 6516653033885-78652-64453446
No 131
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.76 E-value=5.1 Score=20.43 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=58.1
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--------CCCCEEECCCC----CCCCCCCCHHHHCCCCCCCE
Q ss_conf 1797399988884377999999986269818997658--------99886872774----57753140785035788636
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP--------KKGSTYWTGGN----VNVPVFTTVAEAKERTAANA 73 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P--------gkgg~~~~g~~----~~iPvy~sv~ea~~~~~~D~ 73 (300)
.|+.||.|.|- |..|+--+...-+ .+..|.-.-++ .+-...+.+.. .++-+.++..|+++. +|+
T Consensus 4 ~k~~KI~ViGa-GawGTALA~~la~-n~~~v~w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~--adi 79 (340)
T PRK12439 4 KREPKVVVLGG-GSWGTTVASICAR-RGPTLQWVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANC--ADV 79 (340)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHC--CCE
T ss_conf 78992899896-9999999999995-8998999689999999998288876899875589872897899999826--998
Q ss_pred EEEECCHHHHHHHHHHHHH---CCCCEEEEECCCCCH
Q ss_conf 8862120456788999985---399589980588468
Q gi|254781050|r 74 SVIYVPPSGAGDAIIESIE---AEIPLIVCITEGIPV 107 (300)
Q Consensus 74 avI~VP~~~v~dai~Ea~~---agik~iviiteGip~ 107 (300)
-++.||..+..+.+.+... ... .+|..|-|+-.
T Consensus 80 ii~avPS~~~r~~~~~l~~~l~~~~-~iv~~sKGie~ 115 (340)
T PRK12439 80 VVMGVPSHGFRGVLTELAKELRPWV-PVVSLVKGLEQ 115 (340)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCCCCC
T ss_conf 9993680899999999986557887-59973275027
No 132
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=79.72 E-value=4.2 Score=20.95 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=12.4
Q ss_pred CEEEEECCCEEEEECCCCH
Q ss_conf 9567717973999888843
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGK 19 (300)
Q Consensus 1 msil~~~~t~vivqGitg~ 19 (300)
|+|.+.++-.|.+.=+.-.
T Consensus 3 ~tv~~e~~g~Va~ItLnrP 21 (254)
T PRK08259 3 MSVRVERNGPVTTVIINRP 21 (254)
T ss_pred CEEEEEEECCEEEEEECCC
T ss_conf 5389999899999998583
No 133
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=79.71 E-value=5.1 Score=20.42 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCCCEEEEEECCCHH----HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE---CCCHHHH
Q ss_conf 778679998054147----899999997199516764055674467899999999973998728899970---5872489
Q gi|254781050|r 149 RKGSVGILSRSGTLT----YEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE---IGGSAEE 221 (300)
Q Consensus 149 ~pG~VgivSqSG~l~----~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE---iGG~~E~ 221 (300)
.==++++|+-+--+- .++...+..+|+-.+..++.++|. ....+.|....+-+..++|+|..- |||.
T Consensus 131 ~W~~vaiv~s~~d~w~~~~~~l~~~Lr~~gl~v~~v~~~~~~~---~~~~~~L~~i~~~~~vrVvImCm~svligge--- 204 (382)
T cd06371 131 RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDE---KGAREALKKVRSADRVRVVIMCMHSVLIGGE--- 204 (382)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHHHHHHHHHHCCCEEEEEEECCHHHCCCH---
T ss_conf 9808999956841789999999999997698425788506883---6799999999846854899996562312828---
Q ss_pred HHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9999999864226755268998
Q gi|254781050|r 222 EAAQFLKDEAKRGRKKPIVGFV 243 (300)
Q Consensus 222 ~aa~fi~~~~~~~~~KPVva~~ 243 (300)
+.++++.++.+.+++.==-+|+
T Consensus 205 ~~r~lLl~A~~lgLt~G~yVF~ 226 (382)
T cd06371 205 EQRLLLETALEMGMTDGRYVFI 226 (382)
T ss_pred HHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9999999999759988988999
No 134
>pfam02634 FdhD-NarQ FdhD/NarQ family. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity.
Probab=79.59 E-value=4.2 Score=20.95 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=10.2
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 054147899999997199516764055
Q gi|254781050|r 158 RSGTLTYEAVFQTSQEGLGQSTAVGIG 184 (300)
Q Consensus 158 qSG~l~~e~~~~~~~~g~G~S~~VsiG 184 (300)
=||.+++|++.-+.+. |++..+|.+
T Consensus 175 ~SGR~s~emV~Ka~~a--Gipvl~s~s 199 (235)
T pfam02634 175 VTGRLSSEMVQKAARA--GIPVLVSRS 199 (235)
T ss_pred ECCCCCHHHHHHHHHC--CCCEEEECC
T ss_conf 9276769999999976--998999985
No 135
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=79.14 E-value=5.3 Score=20.31 Aligned_cols=109 Identities=10% Similarity=-0.007 Sum_probs=62.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH--H----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 7531407850357886368862120--4----567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP--S----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~--~----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|..-..+.+..+ .-++.+|- . .-.+.+.+++....+.+++.+-+= +..+..++.++|+++++.
T Consensus 94 ~P~y~~y~~~~~~~g--~~~~~v~l~~~~g~~~d~e~l~~~~~~~~~~i~l~nP~NPTG~v~s~~~l~~l~~~a~~~~~~ 171 (350)
T TIGR03537 94 TPGYPVYERGALFAG--GEPTPVKLKEEDGFLLRLEKVDKEILKETKIVWINYPHNPTGAVAPRSYLEETIAICQEHNII 171 (350)
T ss_pred CCCCCCHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 698730699999769--989997535544887799999974666871999899989836476999999999863236907
Q ss_pred EEECCCCEEECCC-----C-----HH-CCE-ECCCCC-CCC-CEEEEEECCCHHHHH
Q ss_conf 9406851013555-----1-----00-020-011235-778-679998054147899
Q gi|254781050|r 124 LIGPNCPGILTPD-----S-----CK-IGI-MPGSIF-RKG-SVGILSRSGTLTYEA 166 (300)
Q Consensus 124 iiGPNc~Gii~p~-----~-----~~-lgi-~p~~~~-~pG-~VgivSqSG~l~~e~ 166 (300)
||==.+-+-+..+ . -+ +-+ ..++.| -|| ++|++..+..+...+
T Consensus 172 vi~DE~Y~~l~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlR~G~~~~~~~li~~~ 228 (350)
T TIGR03537 172 LCSDECYTEIYFGEPPHSALEVGMENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFL 228 (350)
T ss_pred EEEEHHHHHHHCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 984312245534899877556346877999667545046775599997899999999
No 136
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=78.94 E-value=5.4 Score=20.27 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.5
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+..+|+
T Consensus 116 cD~~ia~~~a 125 (257)
T PRK07658 116 CHIRFATESA 125 (257)
T ss_pred CCEEEECCCC
T ss_conf 6534311004
No 137
>PRK05794 consensus
Probab=78.83 E-value=5.4 Score=20.25 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-....+-. ....+++|.. .-.|.+.+++...+|.+++.+-+= +..+..++.++|+++++.
T Consensus 121 ~P~Y~~y~~~~~~~--g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~iil~~P~NPtG~v~s~~~l~~l~~la~~~~i~ 198 (397)
T PRK05794 121 VPYWVSYPELVKLA--DGVPVFVDTKEENDFKYTIEELENAITSKTKAIIINSPNNPTGTVYSKEELEEIAKFAKEHDLF 198 (397)
T ss_pred CCCCCCHHHHHHHC--CCCEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCEEE
T ss_conf 68764349999971--8802996567323777799999975333571899789989878243506799999765410368
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 199 visDEiY~ 206 (397)
T PRK05794 199 IISDEIYE 206 (397)
T ss_pred EECHHHHH
T ss_conf 84333457
No 138
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=78.26 E-value=5.6 Score=20.14 Aligned_cols=11 Identities=0% Similarity=-0.191 Sum_probs=4.2
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+.-|++
T Consensus 121 ~~D~~ia~~~a 131 (262)
T PRK07468 121 VCDVAIGVSGA 131 (262)
T ss_pred CCCEEEECCCC
T ss_conf 57678973787
No 139
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=78.13 E-value=5.7 Score=20.12 Aligned_cols=198 Identities=17% Similarity=0.240 Sum_probs=102.7
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCC---HH
Q ss_conf 999985399589980588468889999998401771894068510135551000200112357786799980541---47
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGT---LT 163 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~---l~ 163 (300)
++++++.....+|+.--..|.-|-.++++..++.. |+++=|+..+...+- +.....+.|-.-++.+.=. |.
T Consensus 40 al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~-----~~~pVI~~Tg~g~i~-~AV~A~k~GA~Dfl~KP~~~~~L~ 113 (464)
T COG2204 40 ALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD-----PDLPVIVMTGHGDID-TAVEALRLGAFDFLEKPFDLDRLL 113 (464)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC-----CCCCEEEEECCCCHH-HHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 99998628999899816789996699999999638-----999889982889999-999998557033321899999999
Q ss_pred HHHHHHHHHCCC----C-EEEEEECCCCCCCCCC--HHHHHHHHHCCCCCCE-EEEEEECCCHHHHHHHHHHHHHHHCCC
Q ss_conf 899999997199----5-1676405567446789--9999999973998728-899970587248999999998642267
Q gi|254781050|r 164 YEAVFQTSQEGL----G-QSTAVGIGGDPVKGTE--FIDVLELFLADEATES-IVMVGEIGGSAEEEAAQFLKDEAKRGR 235 (300)
Q Consensus 164 ~e~~~~~~~~g~----G-~S~~VsiG~D~~~G~~--~~d~L~~~~~Dp~T~~-Ivl~gEiGG~~E~~aa~fi~~~~~~~~ 235 (300)
..+...+..... . ...........++|.+ +.++.+....=-.|++ |++.||-| +--+-.|++|-.+-+ ..
T Consensus 114 ~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESG-tGKElvAr~IH~~S~-R~ 191 (464)
T COG2204 114 AIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESG-TGKELVARAIHQASP-RA 191 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC-CCHHHHHHHHHHHCC-CC
T ss_conf 9999999876532221000001345567752069999999999999847799789977898-758999999986074-45
Q ss_pred CCCEEEEEEEECCCCCC----CCCEE-EEECCCCCCCHHHHHHHHHHC--CCEECCCHHHHHHHHHHHH
Q ss_conf 55268998430157655----32200-112248888999999999988--9757889899999999998
Q gi|254781050|r 236 KKPIVGFVAGKTAPPGR----TMGHA-GAVISGGKGGAEDKINAMKEA--GICIAPSPARIGRSLVELL 297 (300)
Q Consensus 236 ~KPVva~~~GrtAp~g~----~~gHa-GAi~~~~~g~a~~k~~al~~a--Gv~v~~s~~el~~~l~~~l 297 (300)
+||-|++-+|.- |+.. =|||. ||..++ ...+.-.|++| |...-|.+.|||..+...|
T Consensus 192 ~~PFVavNcaAi-p~~l~ESELFGhekGAFTGA----~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kL 255 (464)
T COG2204 192 KGPFIAVNCAAI-PENLLESELFGHEKGAFTGA----ITRRIGRFEQANGGTLFLDEIGEMPLELQVKL 255 (464)
T ss_pred CCCCEEEECCCC-CHHHHHHHHHCCCCCCCCCC----CCCCCCCEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 899256334648-98887777614565676776----43457615773796587323110999999999
No 140
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=78.00 E-value=3.8 Score=21.21 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 6368862120456788999985399589980588468889999998401771894
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.+..+| +|..- .|+.+.|+.++++ .+++|.|.+..+ ++.+.|++.++-++
T Consensus 40 ~g~lvI-~~gdR-~di~~~a~~~~~~-~iIlTgg~~p~~--~v~~la~~~~ipii 89 (105)
T pfam07085 40 PGDLVI-TPGDR-EDIQLAALLAGIA-GLILTGGFEPSE--EVLKLAEEAGLPVL 89 (105)
T ss_pred CCCEEE-EECCC-HHHHHHHHHHCCC-EEEEECCCCCCH--HHHHHHHHCCCEEE
T ss_conf 897999-92796-8999999982487-899948989899--99999987798399
No 141
>PRK06375 consensus
Probab=77.98 E-value=5.8 Score=20.09 Aligned_cols=75 Identities=5% Similarity=0.053 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 775314078503578863688621204----567889999853995899805884------6888999999840177189
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
.-|.|.+-..+.+..+.. .+++|.. .-.|.+.+++....|.+++.+-+= +..+.++|.++|+++++.|
T Consensus 118 ~~P~Y~~y~~~~~~~g~~--~v~~~~~~~~~~d~~~l~~~i~~~tk~i~l~nP~NPTG~v~s~e~l~~i~~la~~~~i~i 195 (381)
T PRK06375 118 PSPYYVSYPDIVKLAGGK--PVFVDTDDDYNIDIDNMRKAVTPKTRAIIINNPVNPTGKVLSEKEIRELVDFALENNLYI 195 (381)
T ss_pred CCCCCHHHHHHHHHHCCE--EEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCEEEE
T ss_conf 188876199999981997--764203887797999999637867749998999798899999999999999887565899
Q ss_pred EECCCCE
Q ss_conf 4068510
Q gi|254781050|r 125 IGPNCPG 131 (300)
Q Consensus 125 iGPNc~G 131 (300)
|==.+-.
T Consensus 196 IsDEiY~ 202 (381)
T PRK06375 196 VSDEIYE 202 (381)
T ss_pred EECCCHH
T ss_conf 8132057
No 142
>PRK06290 aspartate aminotransferase; Provisional
Probab=77.72 E-value=5.9 Score=20.04 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=64.3
Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH----
Q ss_conf 7179739998888437799999998626981899765899886872774577531407850357886368862120----
Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP---- 80 (300)
Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~---- 80 (300)
+|.++.|+|-. -++++.+++-.++---|-.|+ +.-|-|.+-....+-. ..-++.||-
T Consensus 103 ~dp~~eIivt~-Ga~~al~~~~~all~pGDeVl----------------i~~P~yp~Y~~~~~~~--G~~~v~vp~~~e~ 163 (411)
T PRK06290 103 LDPVTEVIHSI-GSKPALAYLPSCFINPGDVTL----------------MTVPGYPVTATHTKWY--GGEVYNLPLLEEN 163 (411)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCCEEE----------------ECCCCCHHHHHHHHHC--CCEEEEEECCCCC
T ss_conf 89776799898-889999999999669999899----------------8688736589999984--9989998656667
Q ss_pred HH--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 45--67889999853995899805884------688899999984017718940685101
Q gi|254781050|r 81 SG--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 81 ~~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
.+ -.+.+.+++....|.+++.+-+= +..+..++.++|+++++.||==.+-.-
T Consensus 164 ~~~~d~~~l~~~i~~ktK~iilnsP~NPTG~v~s~e~l~~i~~~a~~~~i~vIsDEiY~~ 223 (411)
T PRK06290 164 NFLPDLDAIPKDVLEKAKLLYLNYPNNPTGAVATKEFYKEVVDFAFENDIIVVQDAAYAA 223 (411)
T ss_pred CCCCCHHHHHHHCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCEEECHHHHHH
T ss_conf 876595771986255765999889999986142489999999998642877642353555
No 143
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=77.58 E-value=5.9 Score=20.02 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=70.1
Q ss_pred EEEEECCCEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCC-CCCCEEE
Q ss_conf 5677179739998888-----437799999998626981899765899886872774577531407850357-8863688
Q gi|254781050|r 2 SILVDKNTKVLVQGLT-----GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKER-TAANASV 75 (300)
Q Consensus 2 sil~~~~t~vivqGit-----g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~-~~~D~av 75 (300)
++..|+.+++=+-|+| -.-...|-++|+.||.|+|==||+- +||.|.+-... |++
T Consensus 225 a~r~NE~~~~RcVG~T~ETRPDyc~e~~id~ML~~G~TrVElGVQt---------------iy~~i~~~~kRGH~V---- 285 (573)
T TIGR01211 225 AIRKNETSKVRCVGLTIETRPDYCREEEIDRMLKLGATRVELGVQT---------------IYNDILERIKRGHTV---- 285 (573)
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEC---------------CHHHHHHHHCCCCCH----
T ss_conf 9962467686434677215889888688999983598489975207---------------268999983789858----
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCC----HHHHHHHHHHHH
Q ss_conf 6212045678899998539958998058846----888999999840
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIP----VLDMVRVKARLE 118 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip----~~d~~~l~~~A~ 118 (300)
+.+.+|..=+-|||.|...=|--|.| |+|....+++=.
T Consensus 286 -----~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~~Fr~~Fe 327 (573)
T TIGR01211 286 -----RDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLKMFREIFE 327 (573)
T ss_pred -----HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf -----999999877665046220311753335663568999988626
No 144
>PRK10425 DNase TatD; Provisional
Probab=77.56 E-value=5.9 Score=20.01 Aligned_cols=36 Identities=6% Similarity=0.098 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 78899998539958998058846888999999840177
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300)
.+.+..|.++||+.++++... ..+..+.+++++++.
T Consensus 18 ~~vl~rA~~~gV~~ii~~g~~--~~~~~~~~~la~~~~ 53 (258)
T PRK10425 18 DDVVARAFAAGVNGLLITGTN--LRESQQAQKLARQYP 53 (258)
T ss_pred HHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC
T ss_conf 999999998799989994699--999999999998688
No 145
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.13 E-value=4.8 Score=20.62 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECC
Q ss_conf 7973999888843779999999862698189-97658
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHP 42 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~P 42 (300)
+..||+|||+ |+-|++-++.+.+. |.+|+ +-+++
T Consensus 27 ~gk~VaIqG~-GnVG~~~A~~l~~~-Gakvvv~d~~~ 61 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEE-GAKLIVADINE 61 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCH
T ss_conf 8999999898-79999999999967-99799982688
No 146
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.08 E-value=2 Score=22.99 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=84.6
Q ss_pred EEEEECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCEE--ECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH-
Q ss_conf 399988884377999999986-269818997658998868--7277457753140785035788636886212045678-
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAIL-YCQTQVVGGIHPKKGSTY--WTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD- 85 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~-y~gt~ivagV~Pgkgg~~--~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d- 85 (300)
+|+|-| -++|.||..-.+. .-+- ..+|+-- +|... -...-++||.|.++.|.++ ++|+|-+.|-...+-.
T Consensus 6 sVvV~G--trFGq~Ylaaf~~~~~~~-eLaGiLa-qGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~Gg~ 79 (361)
T COG4693 6 SVVVCG--TRFGQFYLAAFAAAPPRF-ELAGILA-QGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGGQ 79 (361)
T ss_pred EEEEEC--CHHHHHHHHHHCCCCCCC-EEEHHHH-CCCHHHHHHHHHHCCCCCCCHHHCCC--CCCEEEEEEEEEEECCC
T ss_conf 699953--037799999852588776-6510432-35477899999869863157745777--78757999730420687
Q ss_pred ---HHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHCCCCEEEECCCCEEECCC-CHHCCEECCCCCCCCC-EEEEEEC
Q ss_conf ---8999985399589980588-46888999999840177189406851013555-1000200112357786-7999805
Q gi|254781050|r 86 ---AIIESIEAEIPLIVCITEG-IPVLDMVRVKARLEKSSSRLIGPNCPGILTPD-SCKIGIMPGSIFRKGS-VGILSRS 159 (300)
Q Consensus 86 ---ai~Ea~~agik~iviiteG-ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~-~~~lgi~p~~~~~pG~-VgivSqS 159 (300)
..+-.++.||. ++-|+ +-..|..++.+.|++.|-|-.= |+.==-.|. +-++-..--...++++ .-=..-|
T Consensus 80 Gs~larall~RGi~---VlqEHPl~p~di~~l~rlA~rqG~~y~v-NTfYPhlpA~rrfi~~~rql~~~~~p~~veat~g 155 (361)
T COG4693 80 GSALARALLARGIH---VLQEHPLHPRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIEYARQLHRRRGPRFVEATCG 155 (361)
T ss_pred CHHHHHHHHHCCCH---HHHHCCCCHHHHHHHHHHHHHHCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27999999971327---8771898878999999999981957887-3347776789999999999998549976884032
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 41478999999971
Q gi|254781050|r 160 GTLTYEAVFQTSQE 173 (300)
Q Consensus 160 G~l~~e~~~~~~~~ 173 (300)
=-+.|..++.+.+.
T Consensus 156 vQvlystLDil~~a 169 (361)
T COG4693 156 VQVLYSTLDILARA 169 (361)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 42368799999999
No 147
>PRK06507 consensus
Probab=76.53 E-value=6.3 Score=19.83 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCC-C
Q ss_conf 775314078503578863688621204------5678899998539958998058846------88899999984017-7
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKS-S 121 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~-g 121 (300)
.-|.|.+-..+.+. ....++.||-. .-++.+++++....|.+++.+-+=| ..+..+|.++|+++ +
T Consensus 121 ~~P~y~~y~~~~~~--~g~~~v~v~l~~~~g~~~d~~~le~~~~~~tk~iil~~P~NPTG~v~s~~~l~~i~~~a~~~~~ 198 (400)
T PRK06507 121 PAPSWVSYADIVKL--AGGVPVAVPCREETGFKLRPEDLEAAITPRTKWLFLNFPNNPTGAACTRAEMAAIAEVMLRHPH 198 (400)
T ss_pred CCCCCCHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 05877405799998--1991599756701176416999997467566499974992931288647799999986653168
Q ss_pred CEEEECCCCE
Q ss_conf 1894068510
Q gi|254781050|r 122 SRLIGPNCPG 131 (300)
Q Consensus 122 ~riiGPNc~G 131 (300)
+.||-=++-+
T Consensus 199 v~visDEiY~ 208 (400)
T PRK06507 199 VWIMTDDIYE 208 (400)
T ss_pred CEECCCCCHH
T ss_conf 2140566424
No 148
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=76.39 E-value=6.4 Score=19.81 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=59.0
Q ss_pred EEECCCEEEEECCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH--
Q ss_conf 77179739998888-437799999998626981899765899886872774577531407850357886368862120--
Q gi|254781050|r 4 LVDKNTKVLVQGLT-GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP-- 80 (300)
Q Consensus 4 l~~~~t~vivqGit-g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~-- 80 (300)
|++++.-.+|+|-| |.|.+.++ ..+. |-.|+- ....+.-+| .+.+- ..+-+++||+
T Consensus 56 flG~d~A~~V~Ggt~Gnqa~i~t--~c~~-GD~VIv------------~~naH~S~~----~a~~l--aG~~~~~v~~~~ 114 (361)
T cd06452 56 FLGMDEARVTPGAREGKFAVMHS--LCEK-GDWVVV------------DGLAHYTSY----VAAER--AGLNVREVPNTG 114 (361)
T ss_pred HCCCCEEEEECCCCHHHHHHHHH--HHCC-CCEEEE------------CCCCHHHHH----HHHHH--CCCEEEEECCCC
T ss_conf 71996699946852089999999--8479-988985------------575128899----88886--384699956776
Q ss_pred --------HHHHHHHHHHHHC-C-CCEEEEEC--CC--CCHHHHHHHHHHHHCCCCEEE--ECCCCEEE
Q ss_conf --------4567889999853-9-95899805--88--468889999998401771894--06851013
Q gi|254781050|r 81 --------SGAGDAIIESIEA-E-IPLIVCIT--EG--IPVLDMVRVKARLEKSSSRLI--GPNCPGIL 133 (300)
Q Consensus 81 --------~~v~dai~Ea~~a-g-ik~iviit--eG--ip~~d~~~l~~~A~~~g~rii--GPNc~Gii 133 (300)
....++++|+.+. + -+.++++| .+ -...|..++.++|+++++.++ |--+.|.+
T Consensus 115 ~~~~~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~dl~~I~~iah~y~iPvlvD~A~~~g~l 183 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRM 183 (361)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 856651889999999999986189964999966787736631379999999985996897154224757
No 149
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=76.28 E-value=6.4 Score=19.79 Aligned_cols=122 Identities=10% Similarity=0.034 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 7973999888843779999999862--69818997658998868727745775314078503578863688621204567
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
+.=+|-|-|.||--|....+..-++ ---++..-.+....|+.+.-...++.|-+.- +. +..++|++....|+....
T Consensus 3 ~~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~i~~~~~~l~v~~~~-~~-~~~~vDlvffa~~~~vs~ 80 (336)
T PRK05671 3 QPLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESAGHSVPFAGKNLRVREVD-SF-DFSQVKLAFFAAGAAVSR 80 (336)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECC-CC-CCCCCCEEEECCCHHHHH
T ss_conf 8887999998649999999998636998026999987656898754689678999788-24-424598899868816679
Q ss_pred HHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 889999853995899805884---------6888999999840177189406851013
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGI---------PVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGi---------p~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
+...++.++|.+ ++=.+..+ |+-....+ +. .+.+-.+--|||.-+.
T Consensus 81 ~~a~~~~~aG~~-VID~Ss~fr~~~vPlvvPEvN~~~l-~~-~~~~~iVanPnC~t~~ 135 (336)
T PRK05671 81 SFAEKALAAGCS-VIDLSGALPSAQAPNVVPEANAERL-AS-LAAPFLVSSPSASAVA 135 (336)
T ss_pred HHHHHHHHCCCE-EEECCCCCCCCCCCEEECCCCHHHH-HH-CCCCCEEECCCCHHHH
T ss_conf 989999976997-9956201330379777404299999-60-7568778678606666
No 150
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=75.96 E-value=5.8 Score=20.08 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=49.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH------HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 753140785035788636886212045------67889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG------AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~------v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.....+.+.. ...++.+|-.. ..+....+.+..+|.+++..-+= +..+.+++.++|+++++.
T Consensus 90 ~P~y~~~~~~~~~~--g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~a~~~~~~ 167 (350)
T cd00609 90 DPTYPGYEAAARLA--GAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGIL 167 (350)
T ss_pred CCCCCHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 79863069999982--9941255656003867668999985688997898569949725463378898999998623862
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 168 ii~De~Y~ 175 (350)
T cd00609 168 IISDEAYA 175 (350)
T ss_pred EEEECCCH
T ss_conf 68853412
No 151
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=75.84 E-value=6.6 Score=19.72 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCC-CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC-CC
Q ss_conf 437799999998626981899765899-8868727745775314078503578863688621204567889999853-99
Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPKK-GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEA-EI 95 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pgk-gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~a-gi 95 (300)
||-|+--....... |.+|++ |+... ...+.....++.|+++ ..|..+ ..|+-+|.||-+...+.+.+-... .=
T Consensus 6 GrvG~~L~~al~~a-Gh~v~g-v~srs~~s~~~a~~~~~~~~~~-~~ev~~--~adlv~itvPDd~I~~vv~~la~~~~~ 80 (111)
T pfam10727 6 GRVGVALGEALERA-GHVVHA-ISAISDASRERAERRLDSPVLP-IPDVIR--RAELVVLAVPDAELPGLVEGLAATVRR 80 (111)
T ss_pred CHHHHHHHHHHHHC-CCEEEE-EEECCHHHHHHHHHHCCCCCCC-HHHHHH--HCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 57799999999978-982899-9838988999999866997679-589897--679999989788899999999832679
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 589980588468889999998401771894
Q gi|254781050|r 96 PLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 96 k~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
..+|+-|+|--- .++++-+++.|...+
T Consensus 81 GqiV~HtSGa~g---~~vL~pa~~~GA~~~ 107 (111)
T pfam10727 81 GQIVAHTSGAHG---IGILAPLETSGAIPL 107 (111)
T ss_pred CCEEEECCCCCH---HHHHCHHHHCCCEEE
T ss_conf 979998668750---776144987898687
No 152
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=75.56 E-value=5.6 Score=20.15 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC
Q ss_conf 79739998888437799999998626981899765899886872774577
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV 56 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i 56 (300)
+..||+|||+ |+-|++-++...+. |-+||+ |+-..| ..+..+.+++
T Consensus 30 ~g~~v~IqG~-GnVG~~~a~~L~~~-Gakvv~-vsD~~G-~i~~~~Gld~ 75 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEA-GAKVVA-VSDSDG-TIYNPDGLDV 75 (227)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCCC-EEECCCCCCH
T ss_conf 8999999898-89999999999987-995999-984787-3888888999
No 153
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.26 E-value=6.8 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCEE--CCCHHHHHHHHH
Q ss_conf 999999999889757--889899999999
Q gi|254781050|r 268 AEDKINAMKEAGICI--APSPARIGRSLV 294 (300)
Q Consensus 268 a~~k~~al~~aGv~v--~~s~~el~~~l~ 294 (300)
.+.-.++|++.++.. +++++|-.....
T Consensus 427 ~~~i~~~l~~~~~~~~~~~~l~~Av~~a~ 455 (501)
T PRK02006 427 APAIRAALADTGVPLVDAATLEEAVRAAA 455 (501)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 99999997517980798599999999999
No 154
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=75.22 E-value=6.8 Score=19.61 Aligned_cols=167 Identities=18% Similarity=0.278 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHCCC--CEEEECCCCEEECCCCHHCCEECCCCCCCCCEEE
Q ss_conf 56788999985399589980588468----88999999840177--1894068510135551000200112357786799
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPV----LDMVRVKARLEKSS--SRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGI 155 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~----~d~~~l~~~A~~~g--~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~Vgi 155 (300)
.-.+.+++|+++|--.++|=.++.|. +.++|++++|+.+| +-| +.=+|.+.+. -=+|.+
T Consensus 92 ~s~E~c~~AI~aGfsSVMIDgShlP~EEN~~~Tkkvve~Ah~~GDYvSV------------EaElG~~gG~---ED~i~V 156 (339)
T TIGR01859 92 SSYESCIKAIKAGFSSVMIDGSHLPFEENVALTKKVVEIAHAKGDYVSV------------EAELGTIGGI---EDGIVV 156 (339)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE------------EEEECEECCE---ECCEEE
T ss_conf 6489999999649816720242687888888889999999851997999------------9984303527---627378
Q ss_pred EEECCCHH--HHHHHHHHHCCCCEEEEEECCC--C--CCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 98054147--8999999971995167640556--7--4467899999999973998728899970587248999999998
Q gi|254781050|r 156 LSRSGTLT--YEAVFQTSQEGLGQSTAVGIGG--D--PVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKD 229 (300)
Q Consensus 156 vSqSG~l~--~e~~~~~~~~g~G~S~~VsiG~--D--~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~ 229 (300)
+++-+-|+ .|+-....+.++= +.+++||+ - ++.|- ++ .-+.+.+++. -+....+. +-|+.
T Consensus 157 ~~~~~~ladp~Ea~~fV~eT~~D-~LA~aIGt~HGa~kykge---qC------trnaDGvLiW---p~LdF~~l-~~I~~ 222 (339)
T TIGR01859 157 VEKEGELADPDEAEQFVKETGVD-YLAAAIGTSHGAFKYKGE---QC------TRNADGVLIW---PGLDFERL-KEIKE 222 (339)
T ss_pred EECCCEECCHHHHHHHHHHCCCC-EECCCCCCCCCCCCCCCC---CC------CCCCCCEECC---CCCCHHHH-HHHHH
T ss_conf 71563675879999999763877-540100350235788866---53------3046723548---88897899-99987
Q ss_pred HHHCCCC-CCEEEEEEEECCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 6422675-526899843015765--5322001122488889999999999889757
Q gi|254781050|r 230 EAKRGRK-KPIVGFVAGKTAPPG--RTMGHAGAVISGGKGGAEDKINAMKEAGICI 282 (300)
Q Consensus 230 ~~~~~~~-KPVva~~~GrtAp~g--~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v 282 (300)
... .|+|. =.|..-|.. |+.-.+|+=..++.|-.++.+..==+.|+-=
T Consensus 223 ----~~~G~PLVL-HGaS~VP~e~v~~~~~~GG~L~ds~GIP~e~ikkAi~lGiaK 273 (339)
T TIGR01859 223 ----LTNGIPLVL-HGASSVPAEIVKEVEEYGGELKDSKGIPEEQIKKAIKLGIAK 273 (339)
T ss_pred ----HHCCCCEEE-CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE
T ss_conf ----508976673-576568588999999818767777768678999999729141
No 155
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=75.21 E-value=3.7 Score=21.30 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 7899999999973998728899970-5872489999999986422675526899843015
Q gi|254781050|r 190 GTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTA 248 (300)
Q Consensus 190 G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtA 248 (300)
+.+..++++.|...+..+-|.||.- +||... .+-.-... . ...+.||..++.|..|
T Consensus 14 ~~~~~~~~~~L~~~~~~k~I~l~INSpGG~v~-~~~~I~d~-i-~~~~~~V~t~~~G~aa 70 (160)
T cd07016 14 GVTAKEFKDALDALGDDSDITVRINSPGGDVF-AGLAIYNA-L-KRHKGKVTVKIDGLAA 70 (160)
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEEECCCCCHH-HHHHHHHH-H-HHCCCCEEEEEECHHH
T ss_conf 83999999999827999997999989985899-99999999-9-8679598999927077
No 156
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=75.05 E-value=6.9 Score=19.59 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=6.8
Q ss_pred HHHHHHCCCCCCEEEEEEE
Q ss_conf 9999973998728899970
Q gi|254781050|r 196 VLELFLADEATESIVMVGE 214 (300)
Q Consensus 196 ~L~~~~~Dp~T~~Ivl~gE 214 (300)
.|+.+++|++.++|++.|+
T Consensus 40 al~~~~~d~~vr~vvltG~ 58 (257)
T COG1024 40 ALDEAEADPDVRVVVLTGA 58 (257)
T ss_pred HHHHHHHCCCCEEEEEECC
T ss_conf 9999962998169999818
No 157
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=74.88 E-value=7 Score=19.56 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.7
Q ss_pred CEEEEEEEEC
Q ss_conf 2689984301
Q gi|254781050|r 238 PIVGFVAGKT 247 (300)
Q Consensus 238 PVva~~~Grt 247 (300)
.-+.+.+||.
T Consensus 199 ~~~l~~SGR~ 208 (262)
T PRK00724 199 DGALLVSGRA 208 (262)
T ss_pred CEEEEEECCC
T ss_conf 8099990766
No 158
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.39 E-value=7.2 Score=19.48 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=64.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 73999888843779999999862--6981899765899886872774577531407850357886368862120456788
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
.|+.+.|. |+-|+--..-.++- ...+|. -..|...-....-+..++-++.+..|++++ .|+-++.|.|+.+.++
T Consensus 3 ~kI~~IG~-G~Mg~Aii~gl~~~~~~~~~i~-v~~r~~~~~~~l~~~~~v~~~~~~~~~~~~--~diIiLaVKP~~~~~v 78 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQE--ADVVVLAVKPQVMEDV 78 (267)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCEEE-EECCCHHHHHHHHHHHCCEEECCHHHHHHC--CCEEEEEECHHHHHHH
T ss_conf 87999866-8999999999997798945289-977999999999997396785786988721--9999997287899999
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9999853995899805884688899999
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVK 114 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~ 114 (300)
..|....-=+.+|-+..|++..+..+..
T Consensus 79 l~~l~~~~~~~iISv~AGi~i~~l~~~l 106 (267)
T PRK11880 79 LSELKGSLDKLVVSIAAGITLARLERAL 106 (267)
T ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHH
T ss_conf 9998765087899916999999999886
No 159
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=74.37 E-value=7.2 Score=19.48 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=67.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 73999888843779999999862--6981899765899886872774577531407850357886368862120456788
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
-||-|-|.||--|.--.+..-+. -.-+++.--+....|+...-....+++ ....+ .+-.++|+++.+.|.....+.
T Consensus 3 ~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s~G~~~~~~~~~~~~-~~~~~-~~~~~~Di~f~a~~~~~s~~~ 80 (348)
T PRK06598 3 YNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRSGGKAPSFGGKTLLV-DALDI-EDLKGLDIALFSAGGDYSKEV 80 (348)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEE-EECCH-HHHHCCCEEEECCCCHHHHHH
T ss_conf 4799989845999999999986799962499998756689875068955478-62785-576079999986882356888
Q ss_pred HHHHHHCCCCEEEEECCC----------CCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999985399589980588----------46888999999840177189406851
Q gi|254781050|r 87 IIESIEAEIPLIVCITEG----------IPVLDMVRVKARLEKSSSRLIGPNCP 130 (300)
Q Consensus 87 i~Ea~~agik~iviiteG----------ip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300)
+.++.++|++ ++=.+.- +||--. +.++.++..+ .+-.|||.
T Consensus 81 ~~~~~~~g~~-VIDlSs~fR~~~~vplvvPEiN~-~~i~~~~~~~-iIAnPgC~ 131 (348)
T PRK06598 81 APKLRAAGGV-VIDNASALRMDPDVPLVVPEVNP-DAIKDALKKG-IIANPNCT 131 (348)
T ss_pred HHHHHHCCCE-EEECCHHHCCCCCCEEECCCCCH-HHHHHCCCCC-CEECCCCH
T ss_conf 8999758989-99886431036884376462078-9997341368-22388819
No 160
>PRK07396 naphthoate synthase; Validated
Probab=74.28 E-value=7.2 Score=19.46 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=5.6
Q ss_pred HCCCCEEEECCC
Q ss_conf 017718940685
Q gi|254781050|r 118 EKSSSRLIGPNC 129 (300)
Q Consensus 118 ~~~g~riiGPNc 129 (300)
-...+|+-.+|+
T Consensus 127 lacD~~ias~~A 138 (273)
T PRK07396 127 LVCDLTIAADNA 138 (273)
T ss_pred HHCCCCEECCCC
T ss_conf 852801223798
No 161
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=74.18 E-value=7.2 Score=19.45 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC---EEECCCCCCCCCC-C-CHHHHCCCCCCCEEEEECCHHH
Q ss_conf 973999888843779999999862698189976589988---6872774577531-4-0785035788636886212045
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS---TYWTGGNVNVPVF-T-TVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg---~~~~g~~~~iPvy-~-sv~ea~~~~~~D~avI~VP~~~ 82 (300)
..-.+++|.||-.|.+.+++....+.|-..||=++.|=+ +..+-+-...|++ . .+.+..+ +.++-+..|-|..
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvGPyt 83 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVGPYT 83 (382)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--CCEEEEECCCCCC
T ss_conf 40389974655215899999997488643216888999889985096644467788899999974--2668996146612
Q ss_pred H--HHHHHHHHHCCCCEEEEECCCCCH-HHHHHH-HHHHHCCCCEEEECCCCEEEC-CCC
Q ss_conf 6--788999985399589980588468-889999-998401771894068510135-551
Q gi|254781050|r 83 A--GDAIIESIEAEIPLIVCITEGIPV-LDMVRV-KARLEKSSSRLIGPNCPGILT-PDS 137 (300)
Q Consensus 83 v--~dai~Ea~~agik~iviiteGip~-~d~~~l-~~~A~~~g~riiGPNc~Gii~-p~~ 137 (300)
. ...+.-|+.+|..-+ =||--+.. +.+..+ .+.|++.|+||| ||-|+=+ |..
T Consensus 84 ~~g~plv~aC~~~GTdY~-DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFDsIPsD 140 (382)
T COG3268 84 RYGEPLVAACAAAGTDYA-DITGEIMFFENSIDLYHAQAADAGARII--PGCGFDSIPSD 140 (382)
T ss_pred CCCCHHHHHHHHHCCCEE-ECCCCHHHHHHHHHHHHHHHHHCCCEEE--CCCCCCCCCCC
T ss_conf 026479999997198724-1356179999998887778875597896--66777767640
No 162
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=73.81 E-value=7.4 Score=19.39 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=53.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC-CCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577-53140785035788636886212045678899
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV-PVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i-Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
|+-+.|. |+.|+--.....+- |.+++...++....-....+.... -+..+..|+.+. .|+-+++|||+.+.++..
T Consensus 1 KIg~IG~-G~mg~ai~~~l~~~-g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~DvIilavkp~~~~~vl~ 76 (93)
T pfam03807 1 KIGIIGA-GNMGEALARGLAAA-GHEVIIANSRNPEKAAALAEELGVGATAVSNEEAAEE--ADVVILAVKPEDAPEVLA 76 (93)
T ss_pred CEEEECC-HHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHC--CCEEEEEECHHHHHHHHH
T ss_conf 9899970-09999999999977-9961278648789999999981997645899999744--998999979999999999
Q ss_pred HHHHC-CCCEEEEECCC
Q ss_conf 99853-99589980588
Q gi|254781050|r 89 ESIEA-EIPLIVCITEG 104 (300)
Q Consensus 89 Ea~~a-gik~iviiteG 104 (300)
|-... .=+.++-++.|
T Consensus 77 ~i~~~~~~k~vISv~aG 93 (93)
T pfam03807 77 ELADLLKGKLVISITNG 93 (93)
T ss_pred HHHHHCCCCEEEEECCC
T ss_conf 87625089999980999
No 163
>PRK07682 hypothetical protein; Validated
Probab=73.62 E-value=7.5 Score=19.36 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|..-....... ....+.+|.. .-++.+++++...+|.+++.+-+= +..+..+|.++|+++++.
T Consensus 112 ~P~Y~~y~~~~~~~--g~~~v~~~~~~~~~~~~d~~~le~~~~~~~k~iil~~P~NPtG~v~s~~el~~l~~la~~~~i~ 189 (378)
T PRK07682 112 EPSFVSYAPLVTLA--GGVPVPVATSLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHNLI 189 (378)
T ss_pred CCCHHHHHHHHHHH--CCEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 58505279999981--8856994026545863799999973652683899828979888888999999999976445967
Q ss_pred EEECCCCEEEC-----------CCC-HH-CCE-ECCCCCC-CC-CEEEEEECCCHHHHH
Q ss_conf 94068510135-----------551-00-020-0112357-78-679998054147899
Q gi|254781050|r 124 LIGPNCPGILT-----------PDS-CK-IGI-MPGSIFR-KG-SVGILSRSGTLTYEA 166 (300)
Q Consensus 124 iiGPNc~Gii~-----------p~~-~~-lgi-~p~~~~~-pG-~VgivSqSG~l~~e~ 166 (300)
||==.+-.-+. ++. -+ +-+ .+++.|. || ++|.+.-+-.+...+
T Consensus 190 iisDEiY~~l~~~~~~~~~~~~~~~~~~~i~~~s~SK~f~l~G~R~G~~~~~~~~~~~~ 248 (378)
T PRK07682 190 VLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGMIAAPVYFSEAM 248 (378)
T ss_pred EECCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECHHHHHHH
T ss_conf 95220146530698767765525644454202341242078573069897089999999
No 164
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=72.85 E-value=6.9 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=8.5
Q ss_pred HHHHHHHHC-CCCEEEECCCC
Q ss_conf 999998401-77189406851
Q gi|254781050|r 111 VRVKARLEK-SSSRLIGPNCP 130 (300)
Q Consensus 111 ~~l~~~A~~-~g~riiGPNc~ 130 (300)
..|.....+ ..--.|==||.
T Consensus 119 ~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 119 RLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred HHHHHHHHCCCCCCEEEEEHH
T ss_conf 999986121358987997777
No 165
>PRK06056 consensus
Probab=72.38 E-value=8 Score=19.18 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=50.2
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH--H----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 7531407850357886368862120--4----567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP--S----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~--~----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+.+-.+ ...+.||. . .-.|+++.++....|.+++.+-+= +..+.++|.++|+++++.
T Consensus 126 ~P~y~~y~~~~~~~g--~~~v~v~~~~~~~~~~d~~~le~~~~~~tk~iil~~P~NPtG~v~s~e~l~~l~~la~~~~i~ 203 (402)
T PRK06056 126 APYWTTYPEAIRLAG--GVPVEVVAGADQGYLVTVEQLEAARTERTKVLLFVSPSNPTGAVYSPEQVRAIGRWAAEHGIW 203 (402)
T ss_pred CCCCCCCHHHHHHCC--CCEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 798756199999728--970782237333778799999963666873999848979888874278899999999971461
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==+.-+-+
T Consensus 204 ii~DEiY~~l 213 (402)
T PRK06056 204 VISDEIYEHL 213 (402)
T ss_pred EECCHHHHHC
T ss_conf 5510443211
No 166
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=72.02 E-value=8.1 Score=19.13 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=50.5
Q ss_pred CCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 5314078503578863688621204----5--67889999853995899805884------6888999999840177189
Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
|.|.+-..+..- ....++++|-. + -.|++++++...+|.+++.+-+= +..+.+++.++|+++++.|
T Consensus 125 P~Y~~y~~~~~~--~g~~~~~v~~~~e~~~~~d~~~l~~~~~~~tk~iil~sP~NPTG~v~s~~~l~~l~~~a~~~~i~i 202 (394)
T TIGR03538 125 PFYQIYEGAALL--AGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLETLKKLIELADQYGFII 202 (394)
T ss_pred CCCCCCHHHHHH--CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 866452999997--599899758673458888999998745236659998899999897778799999999973267699
Q ss_pred EECCCCEEE
Q ss_conf 406851013
Q gi|254781050|r 125 IGPNCPGIL 133 (300)
Q Consensus 125 iGPNc~Gii 133 (300)
|==.+-.-+
T Consensus 203 isDE~Y~~l 211 (394)
T TIGR03538 203 ASDECYSEL 211 (394)
T ss_pred EEECCCCCE
T ss_conf 980683327
No 167
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=71.94 E-value=8.2 Score=19.11 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=5.3
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+..+++
T Consensus 113 acD~~ias~~a 123 (255)
T PRK06563 113 AADIVVAAENT 123 (255)
T ss_pred HCCEEECCCCC
T ss_conf 42642346998
No 168
>PRK08363 alanine aminotransferase; Validated
Probab=71.81 E-value=8.2 Score=19.10 Aligned_cols=76 Identities=9% Similarity=0.021 Sum_probs=50.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-....+.. ....+.+|.. .-.|.+.+++....|.+++.+-+= +..+..++.++|+++++.
T Consensus 124 ~P~Y~~y~~~~~~~--g~~~v~~~~~~~~~~~~d~~~l~~~i~~~tk~i~l~nP~NPTG~v~s~~~l~~i~~la~~~~~~ 201 (398)
T PRK08363 124 GPSYPPYTGLVKFY--GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYDKKTLKEILDIAGEHDLP 201 (398)
T ss_pred CCCCCCHHHHHHHC--CCEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 67567438999983--9978436886214896899999975311372999879999888865488999999998755964
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-.-+
T Consensus 202 vIsDEiY~~l 211 (398)
T PRK08363 202 VISDEIYDLM 211 (398)
T ss_pred EECHHHHHHH
T ss_conf 7613346664
No 169
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=71.72 E-value=8.3 Score=19.08 Aligned_cols=20 Identities=35% Similarity=0.742 Sum_probs=7.2
Q ss_pred HHHCCCCE-EEECCCCEEECC
Q ss_conf 84017718-940685101355
Q gi|254781050|r 116 RLEKSSSR-LIGPNCPGILTP 135 (300)
Q Consensus 116 ~A~~~g~r-iiGPNc~Gii~p 135 (300)
+||+.|+. ++=|.=||++.|
T Consensus 251 yAk~~Gi~A~LAPGLPGiVAP 271 (288)
T TIGR02853 251 YAKKRGIKALLAPGLPGIVAP 271 (288)
T ss_pred HHHHCCCEEEECCCCCCCCCC
T ss_conf 898629828971878783072
No 170
>PRK05869 enoyl-CoA hydratase; Validated
Probab=71.70 E-value=8.3 Score=19.08 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECC----CHH--H------HHH-------HHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 999999997399872889997058----724--8------999-------999998642267552689984301
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGEIG----GSA--E------EEA-------AQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gEiG----G~~--E------~~a-------a~fi~~~~~~~~~KPVva~~~Grt 247 (300)
+.+.++.+++|++.++|++-++-. |.+ | .+. .+.++. -....||||+-+-|..
T Consensus 39 L~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--i~~~pkPvIAav~G~a 110 (225)
T PRK05869 39 IVAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDA--VAAIPKPTVAAITGYA 110 (225)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH--HHHCCCCEEEEECCCC
T ss_conf 99999999648994599998899747726777877226833455789999999999--9838998999982800
No 171
>PRK07778 consensus
Probab=71.69 E-value=8.3 Score=19.08 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----HHHH-HHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEE
Q ss_conf 75314078503578863688621204----5678-89999853995899805884------6888999999840177189
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----GAGD-AIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~v~d-ai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ri 124 (300)
-|.|.+-..+.+.. ..-++.+|-. +-++ ..+|++...+|.+++.+-+= +..+..+|.++|+++++.|
T Consensus 121 ~P~Y~~y~~~~~~~--g~~~v~vp~~~~~~~~~~~~~l~~~~~~~k~iil~~P~NPTG~v~s~~~l~~l~~la~~~~i~i 198 (386)
T PRK07778 121 SPGYPCYRNILSAL--GCEVVEIPCGPDTRFQPTAAMLAELDPPVRGVIVASPANPTGTVIAPEELAAIASWCEASGVRL 198 (386)
T ss_pred CCCCCCHHHHHHHC--CCEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 78651079999973--9825723677445667238898625866439998999898877850799999999985378799
Q ss_pred EECCCCEEE
Q ss_conf 406851013
Q gi|254781050|r 125 IGPNCPGIL 133 (300)
Q Consensus 125 iGPNc~Gii 133 (300)
|==.+-.-+
T Consensus 199 isDEiY~~l 207 (386)
T PRK07778 199 ISDEVYHGL 207 (386)
T ss_pred EECCCHHHH
T ss_conf 943432531
No 172
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=71.48 E-value=8.4 Score=19.05 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 67889999853995899805884688899999984017
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~ 120 (300)
..+.+.+|.++||..+++++.. ..+..+++++++++
T Consensus 17 ~~~vi~~a~~~gv~~ii~~~~~--~~~~~~~~~la~~~ 52 (251)
T cd01310 17 RDDVLARAREAGVIKIIVVGTD--LKSSKRALELAKKY 52 (251)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHC
T ss_conf 9999999998699889996899--99999999999759
No 173
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=71.15 E-value=6.3 Score=19.85 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=7.1
Q ss_pred EEEECCCEEEEECCCC
Q ss_conf 6771797399988884
Q gi|254781050|r 3 ILVDKNTKVLVQGLTG 18 (300)
Q Consensus 3 il~~~~t~vivqGitg 18 (300)
|++.++-+|.+.-+.-
T Consensus 6 i~~e~~~~ia~itlnR 21 (257)
T PRK09674 6 LVVSRQQRVLLLTLNR 21 (257)
T ss_pred EEEEEECCEEEEEECC
T ss_conf 8999999999999658
No 174
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=71.12 E-value=8.3 Score=19.09 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCEEEEECCH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 86368862120----456788999985399589980588468889999998401771894
Q gi|254781050|r 70 AANASVIYVPP----SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 70 ~~D~avI~VP~----~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+.+.-||++.- +.+.+++.+|.++|.+.+++-|.| +|.++|++++...+
T Consensus 42 ~~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~itsGG-------~L~~~a~~~~~p~v 94 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGG-------KLLEMAREHGVPVI 94 (119)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC-------HHHHHHHHCCCCEE
T ss_conf 878789999289796899999999998599099984995-------59999988799989
No 175
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=71.09 E-value=8.5 Score=18.99 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 56788999985399589980588468889999998401771894
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.+.+.+..|.+.|++ ++.||++=-.....+..+.+++.|+++|
T Consensus 16 ~~~~lv~~a~~~g~~-~vaiTDh~~~~g~~~~~~~~~~~gi~~I 58 (67)
T smart00481 16 SPEELVKRAKELGLK-AIAITDHGNLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 999999999987998-8999678864469999999998699799
No 176
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=70.93 E-value=8.6 Score=18.97 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=6.7
Q ss_pred HHCCCCEEEECCC
Q ss_conf 4017718940685
Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300)
Q Consensus 117 A~~~g~riiGPNc 129 (300)
+-...+|+..++.
T Consensus 121 al~cD~ria~~~A 133 (269)
T PRK05864 121 ALAADIRVASSSA 133 (269)
T ss_pred HHCCCEEEECCCC
T ss_conf 6417702435886
No 177
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=70.59 E-value=7.3 Score=19.42 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=18.6
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 63688621204567889999853995899805884688899999984017718
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r 123 (300)
.|+-+..-.|..- +.+..++|...+.+-.|-.. +..++.+..|+.|++
T Consensus 61 ~DvHLMv~~P~~~---i~~~~~~g~d~it~H~Ea~~--~~~~~i~~Ik~~g~k 108 (210)
T PRK08005 61 LSFHLMVSSPQRW---LPWLAAIRPGWIFIHAESVQ--NPSEILADIRAIGAK 108 (210)
T ss_pred EEEEEEECCHHHH---HHHHHHCCCCEEEEECCCCC--CHHHHHHHHHHCCCE
T ss_conf 0799986888999---99999729985999356776--999999999974980
No 178
>PRK08321 naphthoate synthase; Validated
Probab=70.38 E-value=4.4 Score=20.85 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=5.4
Q ss_pred CCCCEEEEECCC
Q ss_conf 399589980588
Q gi|254781050|r 93 AEIPLIVCITEG 104 (300)
Q Consensus 93 agik~iviiteG 104 (300)
..|+.+|+--+|
T Consensus 68 ~~vrvvVLtG~G 79 (302)
T PRK08321 68 PDVGCVLLTGNG 79 (302)
T ss_pred CCCEEEEEECCC
T ss_conf 995499996998
No 179
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=70.26 E-value=8.9 Score=18.88 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=60.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCC-C----CCCH-HHHCCCCCCCEEEEECCHHH
Q ss_conf 7399988884377999999986269818997658998868727745775-3----1407-85035788636886212045
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVP-V----FTTV-AEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iP-v----y~sv-~ea~~~~~~D~avI~VP~~~ 82 (300)
-||.+-|.+|--|.--.+....--.-++....+-...|+.+...+.++. . |.+. .+.....++|+.+.++|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCHH
T ss_conf 15999778877489999998659973799963166458706875824235345543357745530156888999068636
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67889999853995899805884
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGI 105 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGi 105 (300)
..+.+.+..++|++ ++=.+.-+
T Consensus 83 s~~~v~~l~~~g~~-VIDLSadf 104 (349)
T COG0002 83 SAELVPELLEAGCK-VIDLSADF 104 (349)
T ss_pred HHHHHHHHHHCCCE-EEECCCCC
T ss_conf 88989999747994-99887320
No 180
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=70.24 E-value=8.9 Score=18.88 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=63.1
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEE-C-CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99765899886872774577531407850357886368862-1-204567889999853995899805884688899999
Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIY-V-PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVK 114 (300)
Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~-V-P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~ 114 (300)
|+-+.||.-+.. -.+--.|..+..+.++.++++..+- + ++.....++.++++.|..+++.....+ .| -+.
T Consensus 2 Va~l~~G~~~D~----sfn~~~~~g~~~~~~~~g~~~~~~e~~~~~~~~~~~l~~~~~~g~dlIi~~g~~~--~~--~~~ 73 (258)
T cd06353 2 VAFVYVGPIGDQ----GWNYAHDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGF--MD--AAL 73 (258)
T ss_pred EEEEEECCCCCC----CHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECHHH--HH--HHH
T ss_conf 899993499976----6889999999999998598699997799878999999999975998999944576--69--999
Q ss_pred HHHHCC-CCEEE-------ECCCCEEECC---CCHHCCEECCCCCCCCCEEEEE
Q ss_conf 984017-71894-------0685101355---5100020011235778679998
Q gi|254781050|r 115 ARLEKS-SSRLI-------GPNCPGILTP---DSCKIGIMPGSIFRKGSVGILS 157 (300)
Q Consensus 115 ~~A~~~-g~rii-------GPNc~Gii~p---~~~~lgi~p~~~~~pG~VgivS 157 (300)
+.|+++ .++.+ .||...+.-- .....|...+..-+.|.||+|+
T Consensus 74 ~vA~~yPd~~F~~~~~~~~~~Nv~~~~~~~~e~~ylaG~~Aa~~tkt~kVG~Vg 127 (258)
T cd06353 74 KVAKEYPDVKFEHCSGYKTAPNVGSYFARIYEGRYLAGVVAGKMTKTNKVGYVA 127 (258)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999988998899934886888747997231011579999999847898489977
No 181
>pfam09863 DUF2090 Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=70.17 E-value=7 Score=19.56 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=44.5
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHH---HHH-HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 0541478999999971995167640556744678-99999---999-973998728899970587248999999998642
Q gi|254781050|r 158 RSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGT-EFIDV---LEL-FLADEATESIVMVGEIGGSAEEEAAQFLKDEAK 232 (300)
Q Consensus 158 qSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~-~~~d~---L~~-~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~ 232 (300)
++......++..+-+.|+----. - +.+. +-.++ -+. -.+||.++.|+++|- +..+++.++.++.+..
T Consensus 189 ~~~~~~~~~i~r~Y~lGI~PDWW-K-----Lep~~s~~~W~~i~~~I~~~Dp~crGvvvLGl--~Ap~e~L~~~F~~Aa~ 260 (310)
T pfam09863 189 VDDDTVARAIRRFYNLGIKPDWW-K-----LEPLASAAAWQQIDALIEERDPYCRGVVLLGL--DAPEEELAAGFAAAAA 260 (310)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEE-E-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC--CCCHHHHHHHHHHHHC
T ss_conf 78689999999999769998635-4-----58878899999999999843987405898779--9988999999999846
Q ss_pred CCCCCCEEEEEEEEC
Q ss_conf 267552689984301
Q gi|254781050|r 233 RGRKKPIVGFVAGKT 247 (300)
Q Consensus 233 ~~~~KPVva~~~Grt 247 (300)
.+=|..|-.|||
T Consensus 261 ---~p~vkGFAVGRT 272 (310)
T pfam09863 261 ---FPLVKGFAVGRT 272 (310)
T ss_pred ---CCCCCEEECCHH
T ss_conf ---997413313404
No 182
>KOG1684 consensus
Probab=69.90 E-value=9.1 Score=18.83 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.7
Q ss_pred CHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254781050|r 267 GAEDKINAMKE 277 (300)
Q Consensus 267 ~a~~k~~al~~ 277 (300)
|.+.-+++|++
T Consensus 277 tVeeIie~lk~ 287 (401)
T KOG1684 277 TVEEIIEALKN 287 (401)
T ss_pred CHHHHHHHHHH
T ss_conf 59999999998
No 183
>pfam06230 DUF1009 Protein of unknown function (DUF1009). Family of uncharacterized bacterial proteins.
Probab=69.74 E-value=7.1 Score=19.49 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC------CCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9999984017718940685101355510002001123577867999805------4147899999997199516764055
Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS------GTLTYEAVFQTSQEGLGQSTAVGIG 184 (300)
Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS------G~l~~e~~~~~~~~g~G~S~~VsiG 184 (300)
+.+.++-++.|+.+++++.. .| ....++|..+-..-| =..+..++..+.+..+|||-+|.-|
T Consensus 55 ~~i~~~fe~~G~~vi~~~~~---l~---------~ll~~~G~l~~~~p~~~~~~dI~~g~~i~~~l~~~DiGQsvVV~~g 122 (212)
T pfam06230 55 RAVIREFEEEGFKVVGAHEV---AP---------DLLAPEGVLTRRAPDKSELADIARGAEVAKALGALDIGQAVVVKDG 122 (212)
T ss_pred HHHHHHHHHCCCEEECHHHH---HH---------HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99999999879899757896---29---------8644667525789898999999999999999734687416999899
Q ss_pred C----CCCCCCC
Q ss_conf 6----7446789
Q gi|254781050|r 185 G----DPVKGTE 192 (300)
Q Consensus 185 ~----D~~~G~~ 192 (300)
- +.+-|||
T Consensus 123 ~VlavEa~EGTD 134 (212)
T pfam06230 123 AVLAVEAIEGTD 134 (212)
T ss_pred EEEEEECCCCHH
T ss_conf 899995530689
No 184
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=69.52 E-value=6 Score=19.97 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204567889999853995899805884688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r 123 (300)
-++...++..- ....|+-+...+|..- +..++++|...+.+-.| ...+..|+.+..|+.|++
T Consensus 50 p~~v~~l~~~t-~~p~DvHLMV~~p~~~---i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~G~k 111 (220)
T COG0036 50 PPVVKALRKIT-DLPLDVHLMVENPDRY---IEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVK 111 (220)
T ss_pred HHHHHHHHHCC-CCCEEEEEECCCHHHH---HHHHHHHCCCEEEEEEC--CCCCHHHHHHHHHHCCCE
T ss_conf 99999886368-9735899732898999---99999819998999712--776899999999975985
No 185
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=69.51 E-value=8.5 Score=19.02 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 636886212045678899998539958998058846888999999840177189
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300)
.|+-+..-+|... +.+..++|...+.+-.|-.+ +..++.+..|++|++.
T Consensus 61 ~DvHLMv~~P~~~---i~~~~~aGad~I~~H~Ea~~--~~~~~i~~Ik~~g~k~ 109 (220)
T PRK08883 61 IDVHLMVKPVDRI---IPDFAKAGASMITFHVEASE--HVDRTLQLIKEHGCQA 109 (220)
T ss_pred EEEEEEECCHHHH---HHHHHHCCCCEEEECCCCCC--CHHHHHHHHHHCCCCE
T ss_conf 5789983388888---99999759988998577654--9999999999859966
No 186
>PRK09701 D-allose transporter subunit; Provisional
Probab=69.12 E-value=9.4 Score=18.73 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCCCCCHHHH----CCCCCCCEEEEECCHHH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77531407850----35788636886212045----67889999853995899805884688899999984017718940
Q gi|254781050|r 55 NVPVFTTVAEA----KERTAANASVIYVPPSG----AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300)
Q Consensus 55 ~iPvy~sv~ea----~~~~~~D~avI~VP~~~----v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300)
+-|-|..+.+. -++.++++-+..-|... =.+.+++++..++..+++-.-. .......++.|++.|+-++-
T Consensus 35 ~npf~~~~~~Ga~~aAk~~G~~v~v~~~~~~~D~~~Qi~~Ie~~I~~gvdaIii~p~d--~~a~~~~i~~A~~aGIpVV~ 112 (311)
T PRK09701 35 SNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS--SVNLVMPVARAWKKGIYLVN 112 (311)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCCEEE
T ss_conf 9989999999999999986997999927987899999999999997599999991898--77889999999977991896
Q ss_pred CC
Q ss_conf 68
Q gi|254781050|r 127 PN 128 (300)
Q Consensus 127 PN 128 (300)
=|
T Consensus 113 ~D 114 (311)
T PRK09701 113 LD 114 (311)
T ss_pred CC
T ss_conf 36
No 187
>PRK06951 consensus
Probab=68.67 E-value=9.6 Score=18.67 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=54.3
Q ss_pred CEEEEECCCEEEEECCCCHHH--HH----H-----HHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 956771797399988884377--99----9-----999986269818997658998868727745775314078503578
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAG--TF----H-----TEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERT 69 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~g--~~----~-----~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~ 69 (300)
|.|++..+-.|...-+.-++- ++ + +-...+- ...|-+-|--|.|+.+-.| .++ +|..+..
T Consensus 1 m~i~~e~~~~Va~itLnrP~~~Nal~~~m~~el~~~~~~~~~-d~~vrvvvl~g~g~~FcaG--~Dl------~~~~~~~ 71 (254)
T PRK06951 1 MDILVERAAGVLTITFARPAKKNAITAAMYQTMADALAAAQD-DAAVRAILIRGSDGIFSAG--NDL------EDFLKAP 71 (254)
T ss_pred CEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCEECC--CCH------HHHHHCC
T ss_conf 958999989999999748874689899999999999999866-8891799998799987689--975------9886187
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 863688621204567889999853995899805884688899999984017718940685101355510002001
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
..+. .....+.. ..+..--|.+|..-+|...---.+| +-...+|+-.+++. +-.| ..++|+.|
T Consensus 72 ~~~~------~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~l---al~~D~~ia~~~a~-f~~p-e~~~Gl~p 134 (254)
T PRK06951 72 PKDE------DAPVFQFL-RQISSAPKPIVAAVCGPAVGIGTTM---LLHCDLVYAADTAA-FSLP-FAQLGLCP 134 (254)
T ss_pred CCCC------CCHHHHHH-HHHHHCCCCEEEEECCEEECCCHHH---HHHCCCHHHCCCCC-CCCH-HHCCCCCC
T ss_conf 6433------32899999-9998389998999868751441577---66043012203670-1366-53730488
No 188
>PRK09265 aminotransferase AlaT; Validated
Probab=68.43 E-value=9.7 Score=18.64 Aligned_cols=75 Identities=11% Similarity=-0.017 Sum_probs=47.8
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----H--HHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204----5--67889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----G--AGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~--v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|-|.+-..+..- ...-.+.+|.. + -.+.+.+++....|.+++.+-+= +..+..+|.++|+++++.
T Consensus 126 ~P~Yp~Y~~~~~l--~g~~~v~~~~~~~~~f~~d~~~l~~~i~~~tk~iil~nP~NPTG~v~~~~~l~~l~~~a~~~~i~ 203 (404)
T PRK09265 126 APDYPLWTAAVSL--SGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLI 203 (404)
T ss_pred CCCCCHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf 6887306899997--69889998526323778899999976574555999868979512002504688999976315589
Q ss_pred EEECCCCEE
Q ss_conf 940685101
Q gi|254781050|r 124 LIGPNCPGI 132 (300)
Q Consensus 124 iiGPNc~Gi 132 (300)
||==.+-.-
T Consensus 204 visDEiY~~ 212 (404)
T PRK09265 204 IFADEIYDK 212 (404)
T ss_pred EEECCHHHH
T ss_conf 985011455
No 189
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.28 E-value=9.8 Score=18.62 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=51.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH-----
Q ss_conf 973999888843779999999862698189976589988687277457753140785035788636886212045-----
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG----- 82 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~----- 82 (300)
..++.|.| |.....+..+.+.-.|-+|..-=-| +...-+. ++-.+++.+|+.+. +|+.+.=||.-.
T Consensus 2 g~~iaviG--GD~Rq~~l~~~L~~~g~~V~~~gf~-~~~~~~~----~~~~~~~~~~~~~~--~d~iIlPvpg~~d~g~i 72 (296)
T PRK08306 2 GMHIAVIG--GDARQLELIRKLVELGAKVSLVGFD-QLDHGFT----GVAKCSSLEEALSD--VDVIILPVPGTNDEGEV 72 (296)
T ss_pred CCEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCC----CEEEECCHHHHHHC--CCEEEECCCCCCCCCEE
T ss_conf 94899978--7589999999999779979998357-6555667----61773467888723--99999788322589638
Q ss_pred ---------HH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf ---------67-88999985399589980588468889999998401771894
Q gi|254781050|r 83 ---------AG-DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 83 ---------v~-dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.. +..++....+ ..+++-.++. ++.+.+++++++++
T Consensus 73 ~~~~~~~~~~l~~~~~~~l~~~---~~vf~G~~~~----~l~~~~~~~~~~~~ 118 (296)
T PRK08306 73 DTVFSNEKLVLTKELLEKTPEH---CTIFSGIANP----YLKELAETTGRKLI 118 (296)
T ss_pred ECCCCCCCCCHHHHHHHHCCCC---CEEEEECCCH----HHHHHHHHCCCCEE
T ss_conf 5534678763229999746999---8799955998----99999997598367
No 190
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.17 E-value=9.8 Score=18.60 Aligned_cols=12 Identities=0% Similarity=0.124 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254781050|r 285 SPARIGRSLVEL 296 (300)
Q Consensus 285 s~~el~~~l~~~ 296 (300)
.++|+.+.+.++
T Consensus 335 ~Le~~~eAfe~~ 346 (358)
T TIGR03451 335 GLDDVEEAFDKM 346 (358)
T ss_pred EHHHHHHHHHHH
T ss_conf 799999999998
No 191
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase; InterPro: IPR005771 Uridine 5'-triphosphate:glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose pyrophosphorylase, 2.7.7.9 from EC) is responsible for the synthesis of UDP-glucose, a key compound in the biosynthesis of polysaccharides. Glucose is fermented through the glycolysis step to pyruvate, which in turn is converted to lactate. The glycolytic intermediate glucose 6-phosphate is converted to glucose 1-phosphate by phosphoglucomutase activity, and this metabolite is subsequently converted to UDP-glucose by UDP-glucose pyrophosphorylase (GalU) activity. ; GO: 0003983 UTP:glucose-1-phosphate uridylyltransferase activity, 0006011 UDP-glucose metabolic process.
Probab=68.08 E-value=9.9 Score=18.59 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 567889999853995899805
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviit 102 (300)
..-=+++||++|||.-+++||
T Consensus 34 ~IQY~VEEav~aGie~i~~VT 54 (270)
T TIGR01099 34 LIQYIVEEAVEAGIEDILIVT 54 (270)
T ss_pred EEHHHHHHHHHCCCCEEEEEE
T ss_conf 210457989864893479996
No 192
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=68.06 E-value=9.9 Score=18.59 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCEEE---CC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 39998888437799999998626981899765--89988687---27-74577531407850357886368862120456
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH--PKKGSTYW---TG-GNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~--Pgkgg~~~---~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
+|+.+| ||..|..-.+..+..-+-++|+-++ +-|.|... .| ..+.+-+-++. +++-.+.+|.++..+-.+.
T Consensus 4 ~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~-~avlAtl~~~~~y~~~~~~- 80 (350)
T COG3804 4 RVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSI-DAVLATLADAVIYAPLLPS- 80 (350)
T ss_pred EEEEEC-CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCC-CCCEECCCCCEEEECCCCH-
T ss_conf 058962-5557799999997088971689995174001301787648888516865232-2200026663156102612-
Q ss_pred HHHHHHHHHCCCCEEEE-----ECCCCCHHHHHHHHHHHHCCCC-EEEECC
Q ss_conf 78899998539958998-----0588468889999998401771-894068
Q gi|254781050|r 84 GDAIIESIEAEIPLIVC-----ITEGIPVLDMVRVKARLEKSSS-RLIGPN 128 (300)
Q Consensus 84 ~dai~Ea~~agik~ivi-----iteGip~~d~~~l~~~A~~~g~-riiGPN 128 (300)
.|...+++.+|+..+-- +.-+.+.....+..+.|.+.|. .+.|-.
T Consensus 81 ~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtG 131 (350)
T COG3804 81 VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTG 131 (350)
T ss_pred HHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHHHHCCCCEEEECC
T ss_conf 999999997587066158533477867967865557899853874688326
No 193
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=67.66 E-value=3.1 Score=21.77 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCCCHHHHCCCCCCCEEEEECCH-HHHHHHHHH---HHHCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCCEEEE-CCCCE
Q ss_conf 31407850357886368862120-456788999---985399589980-5884688899999984017718940-68510
Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPP-SGAGDAIIE---SIEAEIPLIVCI-TEGIPVLDMVRVKARLEKSSSRLIG-PNCPG 131 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~-~~v~dai~E---a~~agik~ivii-teGip~~d~~~l~~~A~~~g~riiG-PNc~G 131 (300)
+-.|.+++.+. +|+-++.||. |+|.+..+= |+++--+..++| -+-|.....+++-+.+++.|+|++= |=+-|
T Consensus 45 ~a~ta~~~~e~--~Dvi~~MvP~sPqVeeva~GenGi~e~ak~G~~lvDMSSI~P~~s~~~a~a~k~kGid~LDAPVSGG 122 (291)
T TIGR01505 45 SAETAKEVVED--ADVIVTMVPDSPQVEEVAFGENGILEAAKKGKVLVDMSSIAPLESKELAKAVKEKGIDVLDAPVSGG 122 (291)
T ss_pred HHHHHHHHHHH--CCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 28999999974--8979984387697015655687521256888778870567826689999999972884520777898
No 194
>PRK08960 hypothetical protein; Provisional
Probab=67.66 E-value=10 Score=18.54 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=61.9
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-....+. ....++.||-. ..++.+.+++....+.+++.+-+= +..+..+|.++|+++++.
T Consensus 123 ~P~Yp~~~~~~~~--~~~~~~~vp~~~~~~~~~~~~~le~~~~~~~~~iil~nP~NPTG~v~s~~~l~~l~~~a~~~~~~ 200 (387)
T PRK08960 123 DPGYPCNRHFLRL--VEGAAQLVPVGPDTRYQLTPALVERHWDSDSVGALVASPANPTGTLLSRDELAALSQALKARGGH 200 (387)
T ss_pred CCCCCCHHHHHHH--HCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 7876552899998--53744999757544778899999972787872999768989886314689999999987623977
Q ss_pred EEECCCCEEECCC-C--HHC-----CE---ECCCCCC-CC-CEEEEEECCCHHHHHH
Q ss_conf 9406851013555-1--000-----20---0112357-78-6799980541478999
Q gi|254781050|r 124 LIGPNCPGILTPD-S--CKI-----GI---MPGSIFR-KG-SVGILSRSGTLTYEAV 167 (300)
Q Consensus 124 iiGPNc~Gii~p~-~--~~l-----gi---~p~~~~~-pG-~VgivSqSG~l~~e~~ 167 (300)
||==.+-.-+.-+ . .-+ .+ ..++.|. || ++|.+--...+...+.
T Consensus 201 vI~DEiY~~l~~~~~~~s~~~~~~~~i~i~S~SK~~~~~G~RiG~~v~p~~~i~~~~ 257 (387)
T PRK08960 201 LVVDEIYHGLTYGVDAASVLEVDDSAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELE 257 (387)
T ss_pred EEEECCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHH
T ss_conf 998446144125898653113678779995064325577630589998899999999
No 195
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=67.30 E-value=10 Score=18.49 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=60.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCC---CCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 3999888843779999999862698189976589988687277457753---1407850357886368862120456788
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPV---FTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPv---y~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
||+|.|--|||-..--+... .+...-.-+.||-+|....-...++++ +..+.+-.++.++|+.+|==-++.+...
T Consensus 2 kVLviGsGGREHAiA~kla~--s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~pL~~Gv 79 (428)
T COG0151 2 KVLVIGSGGREHALAWKLAQ--SPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAPLVAGV 79 (428)
T ss_pred EEEEECCCCHHHHHHHHHHC--CCCEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 49998688169999999840--8762499993799742113443367655588999999997399989989717876446
Q ss_pred HHHHHHCCCCE
Q ss_conf 99998539958
Q gi|254781050|r 87 IIESIEAEIPL 97 (300)
Q Consensus 87 i~Ea~~agik~ 97 (300)
+-+.-++||+.
T Consensus 80 vD~l~~~Gi~v 90 (428)
T COG0151 80 VDALRAAGIPV 90 (428)
T ss_pred HHHHHHCCCCE
T ss_conf 89998779962
No 196
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=67.19 E-value=10 Score=18.48 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHH---CCCCCCCEEEEECCHHH
Q ss_conf 97399988884377999999986--26981899765899886872774577531407850---35788636886212045
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAIL--YCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEA---KERTAANASVIYVPPSG 82 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~--y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea---~~~~~~D~avI~VP~~~ 82 (300)
..||++-| +|+.+....+.... +.|-++|+-+.+..... ....++|+..+..+. .+++++|.-+|+.|...
T Consensus 125 ~rrvlIIG-~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~---~~~~~~p~lg~~~~l~~~i~~~~ideViIa~p~~~ 200 (445)
T TIGR03025 125 LRRVLIVG-TGELAEELAAALSRNPDLGYRVVGFVDDRPEDR---VEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSE 200 (445)
T ss_pred CCEEEEEE-CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 72399990-848999999999828468848999977875444---55678860188999999999769988999658677
Q ss_pred ---HHHHHHHHHHCCCCEEEE
Q ss_conf ---678899998539958998
Q gi|254781050|r 83 ---AGDAIIESIEAEIPLIVC 100 (300)
Q Consensus 83 ---v~dai~Ea~~agik~ivi 100 (300)
..+.+.+|-+.|++..++
T Consensus 201 ~~~~~~~l~~~~~~~v~v~~i 221 (445)
T TIGR03025 201 EARILELLLQLSDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHHHHHCCCEEEEE
T ss_conf 689999999987559789995
No 197
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=66.84 E-value=10 Score=18.43 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=75.0
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 17973999888843779999999862--6981899765899886872774577531407850357886368862120456
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
++.-+|.|-|.||--|+.-.+..-+. ---++..--++...|+++.-....++|-+.-.+ +..++|++..+.|....
T Consensus 2 ~~~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~SaGk~i~~~~~~~~v~~~~~~--~~~~~di~ff~a~~~~s 79 (337)
T PRK08040 2 SEGWNIALLGATGAVGEALLETLAERQFPVGEIYALAREESAGETLRFGGKSITVQDAAEF--DWTQAQLAFFVAGKEAS 79 (337)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCC--CCCCCCEEEECCCCHHH
T ss_conf 9998799988850889999999971799813599998888899777789918899977703--32469889991771788
Q ss_pred HHHHHHHHHCCCCEEEEEC--------CCCC----HHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 7889999853995899805--------8846----888999999840177189406851013
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCIT--------EGIP----VLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 84 ~dai~Ea~~agik~iviit--------eGip----~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
..-..++.++|.. +|. +.+| +-.. +.++..++++ .+--|||.-+.
T Consensus 80 ~~~~~~a~~aG~~---VIDnss~~Rm~~dVPLvvPeVN~-~~l~~~~~~~-IianPNCsT~~ 136 (337)
T PRK08040 80 AAYAEEATNAGCL---VIDSSGLFALEPDVPLVVPEVNP-FVLADYRNRN-VIAVADSLTSQ 136 (337)
T ss_pred HHHHHHHHHCCCE---EEECCHHHCCCCCCCCCCCCCCH-HHHHHHCCCC-EEECCCHHHHH
T ss_conf 8889999848959---99796131058887421674087-8887432498-25457708888
No 198
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=66.73 E-value=11 Score=18.42 Aligned_cols=10 Identities=0% Similarity=0.082 Sum_probs=4.5
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+-.++.
T Consensus 134 cDi~iAs~~A 143 (298)
T PRK12478 134 ADIVIASEDA 143 (298)
T ss_pred CCEEEECCCC
T ss_conf 7947853887
No 199
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=66.58 E-value=11 Score=18.40 Aligned_cols=111 Identities=19% Similarity=0.125 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-------------CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH--H-
Q ss_conf 43779999999862698189976589-------------9886872774577531407850357886368862120--4-
Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPK-------------KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP--S- 81 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pg-------------kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~--~- 81 (300)
|+.-..--+...+|-|.+-+-.|+-| |-|.++ -+|-|.-++-+-.-..+.+-.+|+-- .
T Consensus 24 G~~v~~fE~~~~~~~g~k~~v~~~sgT~Al~lal~a~~~~~gdeV-----i~p~~t~~at~~ai~~~G~~pvf~Dvd~~t 98 (363)
T pfam01041 24 GPEVREFEKEFAAYLGVKHAVAVSSGTAALHLALRALGIGPGDEV-----IVPSFTFVATANAVLYLGAKPVFVDIDPDT 98 (363)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEE-----EECCCCCHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 989999999999997849599975889999999998598892999-----979977598899999869979985064565
Q ss_pred --HHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf --56788999985399589980-588468889999998401771894068510135
Q gi|254781050|r 82 --GAGDAIIESIEAEIPLIVCI-TEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 82 --~v~dai~Ea~~agik~ivii-teGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
.-++.+++.+....|+++++ .-|.|. |+.++.++|+++++.||==.|..+-+
T Consensus 99 ~~id~~~l~~~i~~~tkaIi~vh~~G~~~-d~~~i~~~~~~~~i~lIEDaA~a~Ga 153 (363)
T pfam01041 99 YNIDPAAIEAAITPRTKAIMPVHLYGQPA-DMDAIRAIAAEHGLPVIEDAAHAHGA 153 (363)
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCC-CHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 68589999986075870999878989868-99999999998499999731320267
No 200
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=66.43 E-value=11 Score=18.38 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=20.1
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 9853995899805884688899999984017718940685101355510002001
Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
.+..--|.+|..-.|...---.+ ++--..+|+..+|+- +..| ..++|+.|
T Consensus 76 ~~~~~~kp~Iaav~G~a~GgG~~---la~~cD~rias~~a~-f~~~-~~~~Gl~p 125 (240)
T PRK06072 76 EIRFSNKIYISAVNGVVAGAGIS---IALSTDFRFASKDVR-FVTA-FQRIGLAP 125 (240)
T ss_pred HHHHCCCCEEEEECCEEEHHHHH---HHHHCCEEEECCCCC-EECC-CCCCCCCC
T ss_conf 99838999899988875568799---998627655302321-0067-55605089
No 201
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=66.25 E-value=11 Score=18.36 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=4.8
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+-.+++
T Consensus 116 acD~~ia~~~a 126 (262)
T PRK03580 116 AADFIVCADNA 126 (262)
T ss_pred HCCEEEECCCC
T ss_conf 52702414787
No 202
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=66.04 E-value=11 Score=18.34 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=11.3
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+--+|+ -+-.| ..++|+.|
T Consensus 114 al~cD~ria~~~a-~f~~p-e~~~Gl~p 139 (258)
T PRK09076 114 ALACDIRIAEEQA-QMALP-EASVGLLP 139 (258)
T ss_pred HHHCCEEEECCCC-CCCCC-HHEECCCC
T ss_conf 8606755431565-42261-21016688
No 203
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.78 E-value=11 Score=18.30 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=34.3
Q ss_pred CCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 314078503578863688621204----567889999853995899805884688899999984017718940
Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300)
+..-++++.++.++++.+...... .-...+.++++.++..+++..-. .......++.+++.|+.++=
T Consensus 17 v~~G~e~aA~~~G~~v~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~~--~~~~~~~l~~a~~~gIPvV~ 87 (273)
T cd06310 17 VKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD--AKALVPPLKEAKDAGIPVVL 87 (273)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999980998999728997899999999999997499999991687--14479999999984998589
No 204
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=65.72 E-value=11 Score=18.30 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=6.6
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 677179739998888
Q gi|254781050|r 3 ILVDKNTKVLVQGLT 17 (300)
Q Consensus 3 il~~~~t~vivqGit 17 (300)
|++.++-.|.+--+.
T Consensus 7 il~e~~g~va~itln 21 (263)
T PRK07799 7 ALVEQRGHTLIVTMN 21 (263)
T ss_pred EEEEEECCEEEEEEC
T ss_conf 799988999999975
No 205
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=65.16 E-value=8.7 Score=18.95 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 636886212045678899998539958998058846888999999840177189
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300)
.|+-+..-.|.. -+.+..++|...+.+-.|-.. .+..++.+..|+.|++.
T Consensus 60 ~DvHLMv~~P~~---~i~~~~~~gad~It~H~Ea~~-~~~~~~i~~Ik~~g~k~ 109 (227)
T PRK09722 60 LDCHLMVTRPQD---YIAQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKV 109 (227)
T ss_pred EEEEEEECCHHH---HHHHHHHCCCCEEEECHHHCC-CCHHHHHHHHHHCCCCE
T ss_conf 478999658888---899998549989995656505-65999999999869972
No 206
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.10 E-value=11 Score=18.22 Aligned_cols=71 Identities=14% Similarity=0.035 Sum_probs=34.7
Q ss_pred CCCCCCHHHHC---CCCCCCEEEEEC----CHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCC-EEEE
Q ss_conf 75314078503---578863688621----20456788999985399589980-588468889999998401771-8940
Q gi|254781050|r 56 VPVFTTVAEAK---ERTAANASVIYV----PPSGAGDAIIESIEAEIPLIVCI-TEGIPVLDMVRVKARLEKSSS-RLIG 126 (300)
Q Consensus 56 iPvy~sv~ea~---~~~~~D~avI~V----P~~~v~dai~Ea~~agik~ivii-teGip~~d~~~l~~~A~~~g~-riiG 126 (300)
.+++.|..|.+ .+.++|+--+.. --..+++.+.++.++|.+-+.++ --.+|.+|..++ ++.|+ ++.|
T Consensus 33 lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~vGG~Ip~~d~~~l----~~~Gv~~vf~ 108 (122)
T cd02071 33 TGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELL----KEMGVAEIFG 108 (122)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH----HHCCCCEEEC
T ss_conf 799889999999999739989999646554478999999999976999846999456498999999----9779988989
Q ss_pred CCCC
Q ss_conf 6851
Q gi|254781050|r 127 PNCP 130 (300)
Q Consensus 127 PNc~ 130 (300)
|.++
T Consensus 109 pgt~ 112 (122)
T cd02071 109 PGTS 112 (122)
T ss_pred CCCC
T ss_conf 5889
No 207
>PRK08175 aminotransferase; Validated
Probab=64.87 E-value=11 Score=18.19 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=41.9
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHH---HHHHHHHHHC---CCCEEEEECCCC------CHHHHHHHHHHHHCCCCE
Q ss_conf 7531407850357886368862120456---7889999853---995899805884------688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGA---GDAIIESIEA---EIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v---~dai~Ea~~a---gik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300)
-|.|..-.....-.+ .-++.||-..- .+..+++++. ..|.+++.+-+= +..+..+|.++|+++++.
T Consensus 122 ~P~Yp~y~~~~~~~g--~~~~~vpl~~~~~~~~~le~~~~~~~~ktk~iiln~P~NPTG~v~s~e~l~~i~~~a~~~~i~ 199 (395)
T PRK08175 122 NPSYPIHIYGAVIAG--AQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVL 199 (395)
T ss_pred CCCCCCHHHHHHHHC--CCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf 877401499999847--840785045777604419999972687745999889999888757999999999988866948
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 200 visDEiY~ 207 (395)
T PRK08175 200 VVHDLAYA 207 (395)
T ss_pred EEECCCHH
T ss_conf 98235314
No 208
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=64.84 E-value=11 Score=18.19 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 999999719951676405567446789999999997399872889997058724899999999864226755268998
Q gi|254781050|r 166 AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFV 243 (300)
Q Consensus 166 ~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~ 243 (300)
+++.+.+. |++++.++= |.+...+++.+.++++.+.|...-| ..|-|+.....+.-.||.+.+.
T Consensus 3 lv~~L~~~--GV~~vFg~p-----G~~~~~l~~a~~~~~~i~~i~~~hE-------~~A~~mA~gyar~tgkp~v~~~ 66 (162)
T cd07037 3 LVEELKRL--GVRDVVISP-----GSRSAPLALAAAEHPEFRLHVRVDE-------RSAAFFALGLAKASGRPVAVVC 66 (162)
T ss_pred HHHHHHHC--CCCEEEECC-----CCCHHHHHHHHHHCCCCEEEEECCH-------HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 89999987--999999907-----7028999999985899769953667-------7899999999998799879994
No 209
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source..
Probab=64.56 E-value=12 Score=18.16 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=95.8
Q ss_pred CCCCCCHHHHCCCCCCCE-EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 753140785035788636-8862120456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 56 VPVFTTVAEAKERTAANA-SVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~-avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
|-+-||+-.= .+|+ +|-+==|..+-.+...|.+.||+ +|-.=+++.. +.....|-|.....|
T Consensus 46 i~~vNsLiaQ----~V~AIaiSAnDpdAlvpalkkA~~rgI~-Vv~~DS~v~p-----------egR~l~~n~a~~~~I- 108 (307)
T TIGR02637 46 IEVVNSLIAQ----KVDAIAISANDPDALVPALKKAMKRGIK-VVTWDSGVAP-----------EGRKLFLNQADAELI- 108 (307)
T ss_pred HHHHHHHHHC----CEEEEEECCCCCCHHHHHHHHHHHCCCE-EEEECCCCCC-----------CCCEEEECCCCHHHH-
T ss_conf 2210003105----7006997027852278999999856982-9985278881-----------345442264683128-
Q ss_pred CCCHHCCEECCCCCCC-CCEEEEEECCCHHHHHHHHHH------HCCCCEEEEEECC-CCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 5510002001123577-867999805414789999999------7199516764055-6744678999999999739987
Q gi|254781050|r 135 PDSCKIGIMPGSIFRK-GSVGILSRSGTLTYEAVFQTS------QEGLGQSTAVGIG-GDPVKGTEFIDVLELFLADEAT 206 (300)
Q Consensus 135 p~~~~lgi~p~~~~~p-G~VgivSqSG~l~~e~~~~~~------~~g~G~S~~VsiG-~D~~~G~~~~d~L~~~~~Dp~T 206 (300)
|+..+-.+...+-.. |.|+++|-+-|.+++=+|.-. +..+--=..|.+= ||-+.-=+|-+.-=+|.+-|+-
T Consensus 109 -G~~~vql~A~~~~~~kG~~AILSAa~T~tNQN~WI~~mK~~Lk~p~y~~~kLV~~vYGDD~~~KS~~ea~GLl~s~PNl 187 (307)
T TIGR02637 109 -GRTQVQLAAEQLEEGKGEIAILSAASTATNQNAWIEIMKKELKDPKYPKVKLVAVVYGDDDAEKSYQEAQGLLKSYPNL 187 (307)
T ss_pred -HHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf -8999999999717898858885033100146799999997547877888307999846780341188861365428971
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 2889997058724899999999864226755268998430157655
Q gi|254781050|r 207 ESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGR 252 (300)
Q Consensus 207 ~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~ 252 (300)
|+|+-=--+| . .-|+++++.+...+ | +...|.--|...
T Consensus 188 K~IiaPTTVG-i--~AAaq~~~d~~~~G--k---V~lTGLglPsem 225 (307)
T TIGR02637 188 KGIIAPTTVG-I--VAAAQAVEDAKLIG--K---VKLTGLGLPSEM 225 (307)
T ss_pred EEEECCCHHH-H--HHHHHHHHCCCCEE--E---EEEECCCCCHHH
T ss_conf 2787876388-9--99998863488322--4---887315782799
No 210
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=63.91 E-value=12 Score=18.08 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=63.5
Q ss_pred CEEEEEC--CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE--EECCCCEEEC--CCCHHCCEECC
Q ss_conf 3688621--2045678899998539958998058846888999999840177189--4068510135--55100020011
Q gi|254781050|r 72 NASVIYV--PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL--IGPNCPGILT--PDSCKIGIMPG 145 (300)
Q Consensus 72 D~avI~V--P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri--iGPNc~Gii~--p~~~~lgi~p~ 145 (300)
|--+|.. -.+.|.+.+.-|.+.+.+.-|++||..|...-..+.+..+++|++. |=-+..|.+. -+...+|.-
T Consensus 119 dg~vIlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad-- 196 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGAD-- 196 (301)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCEEEECCC--
T ss_conf 898799834718999999986641885499997278862379999999974995599851588999974898998820--
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 235778679998054147899999997199516
Q gi|254781050|r 146 SIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQS 178 (300)
Q Consensus 146 ~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S 178 (300)
.++.-| ++++++||..- +..+.+.+.-|-
T Consensus 197 ~I~~nG--~lvnkiGT~~l--A~~A~e~~~Pf~ 225 (301)
T COG1184 197 AILANG--ALVNKIGTSPL--ALAARELRVPFY 225 (301)
T ss_pred CEECCC--CEEECCCHHHH--HHHHHHHCCCEE
T ss_conf 121477--37860336999--999998399889
No 211
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.84 E-value=12 Score=18.07 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC-----------CCCEEECCCCHHCCEEC-----CCCC
Q ss_conf 8899998539958998058846888999999840177189406-----------85101355510002001-----1235
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP-----------NCPGILTPDSCKIGIMP-----GSIF 148 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP-----------Nc~Gii~p~~~~lgi~p-----~~~~ 148 (300)
..+..++..|+..+++..-- .......++.|++.|+.++-= .+.+++..+....|-+. ...-
T Consensus 47 ~~i~~~I~~gvDaIii~p~d--~~a~~~~v~~A~~aGIpVv~~d~~~~~~~~~~~~~~~v~~Dn~~~G~~aa~~l~~~~~ 124 (294)
T cd06316 47 ADIETTISQKPDIIISIPVD--PVSTAAAYKKVAEAGIKLVFMDNVPSGLEHGKDYAGIVTDDNYGNGQIAADALAKALP 124 (294)
T ss_pred HHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 99999998599999993888--6787999999998199679832677777777747999948889999999999996266
Q ss_pred CCCCEEEEEECCCH-HH-H----HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
Q ss_conf 77867999805414-78-9----999999719951676405567446789999999997399872889997058724899
Q gi|254781050|r 149 RKGSVGILSRSGTL-TY-E----AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEE 222 (300)
Q Consensus 149 ~pG~VgivSqSG~l-~~-e----~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~ 222 (300)
.+|.|+++...... .. + +.+.+.+..-++-....-+.+ .......-.-.+|...|+.++|.-.... .-.-
T Consensus 125 ~~g~v~ii~~~~~~~~~~~R~~Gf~~~l~~~~p~i~iv~~~~~~-~~~~a~~~~~~~L~~~Pdi~~I~~~nd~---~a~G 200 (294)
T cd06316 125 GKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGID-GPSKAEDIANAMLTQNPDLKGIYAVWDV---PAEG 200 (294)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHHHHCCCCCEEEECCCH---HHHH
T ss_conf 68808999758997689999999999997208972999843888-8899999999999739998889986863---6599
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999986422675526899843
Q gi|254781050|r 223 AAQFLKDEAKRGRKKPIVGFVAG 245 (300)
Q Consensus 223 aa~fi~~~~~~~~~KPVva~~~G 245 (300)
+.+.++++-+ ...+|+.+-.|
T Consensus 201 a~~Al~~aG~--~~v~ivg~d~g 221 (294)
T cd06316 201 VIAALRAAGR--DDIKVTTVDLG 221 (294)
T ss_pred HHHHHHHCCC--CCCEEEEEECC
T ss_conf 9999998199--98379999589
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=63.59 E-value=11 Score=18.27 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=96.4
Q ss_pred CEEEEECCCEEEEECCCCHH-HHHH------HHHHHHHCCCCEEEEECCCCCCEE--ECCC-CCCCCCCCCHHHHCCCCC
Q ss_conf 95677179739998888437-7999------999986269818997658998868--7277-457753140785035788
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKA-GTFH------TEQAILYCQTQVVGGIHPKKGSTY--WTGG-NVNVPVFTTVAEAKERTA 70 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~-g~~~------~~~~~~y~gt~ivagV~Pgkgg~~--~~g~-~~~iPvy~sv~ea~~~~~ 70 (300)
|++.+|..- +-|++ |.|. -+.+.|- -|||.==|.+..--.. |-|. +|.+-+ +-|-++.-|
T Consensus 317 MtF~vN~SP------lAG~EVGk~VTSR~i~dRL~rEL-~~NvALrVe~t~~~D~f~VsGRGELhLsI---LiEtMRREG 386 (609)
T TIGR01394 317 MTFSVNDSP------LAGKEVGKFVTSRQIRDRLEREL-ETNVALRVEDTESADKFEVSGRGELHLSI---LIETMRREG 386 (609)
T ss_pred EEEEECCCC------CCCCCCCCEECCCCHHHHHHHHH-HCCCEEEEECCCCCCCEEEECCEEEHHHH---HHHCCCCCC
T ss_conf 998752887------65532573032441578999986-31714564038988734872011130234---542034444
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHH--HHCCCCEEEECCCC-EE-----ECCCCHHC
Q ss_conf 63688621204567889999853995--89980588468889999998--40177189406851-01-----35551000
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIP--LIVCITEGIPVLDMVRVKAR--LEKSSSRLIGPNCP-GI-----LTPDSCKI 140 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik--~iviiteGip~~d~~~l~~~--A~~~g~riiGPNc~-Gi-----i~p~~~~l 140 (300)
..++|= +|+-+..- ..|-| -+=.+|=-+|+.-+=.+.+. .|+..|.=+.|.-- |= ..|.+..+
T Consensus 387 fEl~Vg--~P~Vi~k~-----~dG~k~EP~E~~~IDVPEe~~G~V~e~Lg~RKgEm~~M~~~g~EG~tRl~F~~PsRGLI 459 (609)
T TIGR01394 387 FELQVG--RPQVIYKE-----IDGKKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMKDMEPSGNEGRTRLEFVIPSRGLI 459 (609)
T ss_pred EEEEEC--CCEEEEEE-----ECCEEECCEEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCHH
T ss_conf 147535--97789984-----58853187569998028533546665314783477725676996469999981664001
Q ss_pred CE-------------ECC-----CCCCCCCE------EEEEEC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 20-------------011-----23577867------999805-41478999999971995167640556744678
Q gi|254781050|r 141 GI-------------MPG-----SIFRKGSV------GILSRS-GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGT 191 (300)
Q Consensus 141 gi-------------~p~-----~~~~pG~V------givSqS-G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~ 191 (300)
|+ |.. ..|+||.| +|||.. |+-+...++.|..+| ..||+-|-|+|-|+
T Consensus 460 Gfr~~FlT~TrG~Gimn~~F~~Y~P~~pG~i~~R~~GsLVs~~~G~a~~YaL~nLqeRG---~~Fv~pG~~VY~GM 532 (609)
T TIGR01394 460 GFRTEFLTDTRGTGIMNHVFDEYEPWKPGEIETRRNGSLVSMEDGTATAYALWNLQERG---RLFVSPGTEVYEGM 532 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCC---CEEECCCCCEECCE
T ss_conf 22024544102131120121025788876877751415899268810667687387538---43307886263347
No 213
>pfam00155 Aminotran_1_2 Aminotransferase class I and II.
Probab=63.23 E-value=12 Score=18.00 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------56788999985399589980588------4688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+..++.+. ....++.+|-. .-.+.+.+++..+.+.+++.+-+ .+..+..+|.++|+++++.
T Consensus 94 ~P~y~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPTG~~~~~~~l~~l~~~a~~~~~~ 171 (351)
T pfam00155 94 APTYASYIRIARL--AGGEVVRYPLYDSNDFHLDFDALEAALKEKPKVVLHESPHNPTGTVAPLEELEKLLDLAKEHNIL 171 (351)
T ss_pred CCCCHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 9986889999998--39977898456434779899999975415986999889919877776889999998653028889
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-.-+
T Consensus 172 ii~DE~Y~~~ 181 (351)
T pfam00155 172 LLVDEAYAGF 181 (351)
T ss_pred EEEECCCCCE
T ss_conf 9982663331
No 214
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=63.21 E-value=12 Score=18.00 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred ECCCHHHHHHHHHHHCCCCE--EEEEECCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 05414789999999719951--67640556-74467899999999973998
Q gi|254781050|r 158 RSGTLTYEAVFQTSQEGLGQ--STAVGIGG-DPVKGTEFIDVLELFLADEA 205 (300)
Q Consensus 158 qSG~l~~e~~~~~~~~g~G~--S~~VsiG~-D~~~G~~~~d~L~~~~~Dp~ 205 (300)
.+|+++.+++.++.++++.. ..+..+|- |..+-.+..+.++++.-|++
T Consensus 72 ~~gG~Gs~i~~~l~e~~~~~l~~~v~~ig~pd~~ip~s~~~~~~~~Gl~~~ 122 (124)
T pfam02780 72 PRGGFGAEVAAALAEEGFDYLDAPVLRVGGPDTPIPHSPALELAYLGLTAE 122 (124)
T ss_pred CCCCHHHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCHH
T ss_conf 678689999999998566544999699747989899999999988499912
No 215
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=63.13 E-value=12 Score=17.99 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=19.8
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 63688621204567889999853995899805884688899999984017718
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r 123 (300)
.|+-+..-+|..- +.+..++|...+.+..|-. .+..++.+..|++|++
T Consensus 65 lDvHLMv~~P~~~---i~~~~~aGad~i~~H~Ea~--~~~~~~i~~ik~~g~k 112 (223)
T PRK08745 65 IDVHLMVEPVDRI---VPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQ 112 (223)
T ss_pred EEEEEEECCHHHH---HHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHCCCC
T ss_conf 3778983398999---9999973997899960644--2999999999983984
No 216
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=63.10 E-value=12 Score=17.99 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=54.6
Q ss_pred CCEEEEECCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHH---CCCCCCCEEEEECCHHH
Q ss_conf 97399988884377999999986--26981899765899886872774577531407850---35788636886212045
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAIL--YCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEA---KERTAANASVIYVPPSG 82 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~--y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea---~~~~~~D~avI~VP~~~ 82 (300)
..||++-|- |+.+..-.+.... ..|-++|+-+.+...... ...++|+..+..|. .+++++|..+++.|...
T Consensus 128 ~rrvLIIG~-g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~---~~~~~pvlg~~~~l~~~i~~~~ideViia~~~~~ 203 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDART---GVRGVPVLGKLDDLEELIREGEVDEVYIALPLAA 203 (451)
T ss_pred CCEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 754999968-689999999997194368489999838854444---4579973698999999999679988999548355
Q ss_pred H---HHHHHHHHHCCCCEEE
Q ss_conf 6---7889999853995899
Q gi|254781050|r 83 A---GDAIIESIEAEIPLIV 99 (300)
Q Consensus 83 v---~dai~Ea~~agik~iv 99 (300)
- .+.+.+|-+.++...+
T Consensus 204 ~~~~~~li~~~~~~~v~v~~ 223 (451)
T TIGR03023 204 EKRILELLDALEDLTVDVRL 223 (451)
T ss_pred HHHHHHHHHHHHHCCCEEEE
T ss_conf 68999999998645987999
No 217
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=62.77 E-value=8.9 Score=18.88 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCCCHHHHCCC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCCCEEEECC
Q ss_conf 7531407850357----8863688621204567889999853995899805884688---89999998401771894068
Q gi|254781050|r 56 VPVFTTVAEAKER----TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 56 iPvy~sv~ea~~~----~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g~riiGPN 128 (300)
.-.|.|+-||.++ .+.++.+.++.+....+.-.+-.-++... |++.-||+.+ .+....++||+.++-.+| =
T Consensus 13 ~DaY~Si~eAL~ha~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dg-ilvpgGFG~rG~eGki~Ai~yARen~iPfLG-I 90 (235)
T cd01746 13 PDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADG-ILVPGGFGIRGVEGKILAIKYARENNIPFLG-I 90 (235)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCHHHHHHCCCC-EEECCCCCCCCHHHHHHHHHHHHHCCCCEEE-E
T ss_conf 3379989999999899749905899985565476688999730697-8957888877645889999999973997254-4
Q ss_pred CCEEEC
Q ss_conf 510135
Q gi|254781050|r 129 CPGILT 134 (300)
Q Consensus 129 c~Gii~ 134 (300)
|+|+-.
T Consensus 91 ClGmQ~ 96 (235)
T cd01746 91 CLGMQL 96 (235)
T ss_pred ECCCCH
T ss_conf 103432
No 218
>PRK07629 consensus
Probab=62.75 E-value=12 Score=17.95 Aligned_cols=26 Identities=8% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+-.+++ =+-.| ..++|+.|
T Consensus 118 al~~D~ria~~~a-~f~~p-~~~~Gl~p 143 (261)
T PRK07629 118 VAACDIAVAADTA-KFCLS-EVRLGLIP 143 (261)
T ss_pred HHHCCEEECCCCC-EEECH-HCCCCCCC
T ss_conf 7733421314787-57551-03446177
No 219
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=62.50 E-value=13 Score=17.92 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCE--EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 99988884377999999986269----81899765899886--8727745775314078503578863688621204567
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQ----TQVVGGIHPKKGST--YWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~g----t~ivagV~Pgkgg~--~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
|-+.|. |..|.+.++...+ +. .-.|+-..+.|--. .+.+ .+.-.++.|..+ ++|+.|=+..++.+.
T Consensus 3 vgiVGc-GaIG~~l~e~v~~-~~~~~e~v~v~D~~~ek~~~~~~~~~----~~~~s~ide~~~--~~DlvVEaAS~~Av~ 74 (255)
T COG1712 3 VGIVGC-GAIGKFLLELVRD-GRVDFELVAVYDRDEEKAKELEASVG----RRCVSDIDELIA--EVDLVVEAASPEAVR 74 (255)
T ss_pred EEEEEC-CHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHCC----CCCCCCHHHHHH--CCCEEEEECCHHHHH
T ss_conf 789823-3788999999866-88643699994488788888886038----876356777730--244254307889999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHHHHCCCCEEEECC
Q ss_conf 88999985399589980588468889-999998401771894068
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDM-VRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~-~~l~~~A~~~g~riiGPN 128 (300)
+-+.+++++|+..+|+=+.-+.+.+. .++.+.|+..+-|+-=|.
T Consensus 75 e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pS 119 (255)
T COG1712 75 EYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPS 119 (255)
T ss_pred HHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 986999965998899951220686799999999853894799337
No 220
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=62.45 E-value=13 Score=17.91 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCCHHHHCCCCCCCEEEE--ECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
Q ss_conf 3140785035788636886--212045678899998539958998058846888999999840177--1894068
Q gi|254781050|r 58 VFTTVAEAKERTAANASVI--YVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS--SRLIGPN 128 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI--~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g--~riiGPN 128 (300)
-|+.|+||.+.-+.|..+. -.|-+.-.+. .|.--+|++.++++-|+=|.- +.++++.+.+.+ +.+.|-.
T Consensus 258 ay~yVkeAl~~lgl~~~~lklg~~~Plp~~~-i~~F~~g~~~vlVVEE~~P~i-E~qv~~~l~~~~~~~~v~GKd 330 (640)
T COG4231 258 AYNYVKEALEDLGLDDELLKLGTPYPLPEQL-IENFLKGLERVLVVEEGEPFI-EEQVKALLYDAGLPVEVHGKD 330 (640)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCCHHH-HHHHHHCCCEEEEEECCCHHH-HHHHHHHHHHCCCCEEEECCC
T ss_conf 1799999999758874178945875788899-999982684799995587048-999999987548854740344
No 221
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.13 E-value=13 Score=17.88 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCE--------EECCCCCCCCCCCCHHHHC--CCCCCCEEEEECCH---HHHH
Q ss_conf 437799999998626981899765899886--------8727745775314078503--57886368862120---4567
Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPKKGST--------YWTGGNVNVPVFTTVAEAK--ERTAANASVIYVPP---SGAG 84 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~--------~~~g~~~~iPvy~sv~ea~--~~~~~D~avI~VP~---~~v~ 84 (300)
|+.-+.--+..-+|-|+.-+..|+-|-..- .-.|++.-+|-|.-++-+- -..++.--.+=|-+ ..-+
T Consensus 33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~ 112 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDP 112 (374)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf 86789999999998499739996684899999999648799997993687539889999976996799964764147799
Q ss_pred HHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCC-HHCC---------EECCCCCCCC-C
Q ss_conf 889999853995899805-88468889999998401771894068510135551-0002---------0011235778-6
Q gi|254781050|r 85 DAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDS-CKIG---------IMPGSIFRKG-S 152 (300)
Q Consensus 85 dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~-~~lg---------i~p~~~~~pG-~ 152 (300)
+.+++++....|+++.+- -|.|- ||..+.++|+++|+.||==-|..+=+--+ -++| +.|.+.+.-| .
T Consensus 113 ~~ie~aIt~~tKAIipVhl~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEG 191 (374)
T COG0399 113 DLIEAAITPRTKAIIPVHLAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEG 191 (374)
T ss_pred HHHHHHCCCCCEEEEEEHHCCCCC-CHHHHHHHHHHCCCEEEEECCHHCCCEECCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 999987155774999851216877-9899999998739849987603206723584255666468998658776556675
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCCE-----EEEEECC
Q ss_conf 7999805414789999999719951-----6764055
Q gi|254781050|r 153 VGILSRSGTLTYEAVFQTSQEGLGQ-----STAVGIG 184 (300)
Q Consensus 153 VgivSqSG~l~~e~~~~~~~~g~G~-----S~~VsiG 184 (300)
=.+++.+-. .++.+..++..|... .....+|
T Consensus 192 Gav~tnd~e-la~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 192 GAVVTNDEE-LAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred EEEEECCHH-HHHHHHHHHHHCCCCCCCCCCEEEECC
T ss_conf 079838899-999999999837677866564352133
No 222
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=62.06 E-value=13 Score=17.87 Aligned_cols=106 Identities=22% Similarity=0.187 Sum_probs=74.8
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHHHCCCCE--EEECCCCEEECCCCHHCCEECC-CCCC
Q ss_conf 621204567889999853995899805---884688899999984017718--9406851013555100020011-2357
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCIT---EGIPVLDMVRVKARLEKSSSR--LIGPNCPGILTPDSCKIGIMPG-SIFR 149 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviit---eGip~~d~~~l~~~A~~~g~r--iiGPNc~Gii~p~~~~lgi~p~-~~~~ 149 (300)
++|.|...++-+.++..-|+|.+++== |-...=+...|.+.++..|+. +==|-.+|=+.|+..- +|-. .---
T Consensus 9 l~vsPQ~~~aD~a~aA~lGf~tvInNRPD~Ee~~qp~~A~~~aaa~aAG~~Gy~H~Pv~~g~~~pd~ve--~fraa~~aA 86 (136)
T TIGR01244 9 LAVSPQVTKADIARAARLGFKTVINNRPDREEEEQPDSAAIKAAAEAAGLTGYLHLPVTAGDLTPDDVE--TFRAALEAA 86 (136)
T ss_pred CEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHH--HHHHHHHHC
T ss_conf 200478898889999854636651068888888888728899999856888610054217888762689--999999822
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCE--EEEEECC
Q ss_conf 7867999805414789999999719951--6764055
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQ--STAVGIG 184 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~--S~~VsiG 184 (300)
-++|==.+||||=+. ++|-+.+++-|. -.+|-.+
T Consensus 87 ~~PVLA~CRsGTRss-~lW~~~qA~~G~p~eeiv~~a 122 (136)
T TIGR01244 87 ESPVLAYCRSGTRSS-LLWALRQAAEGVPVEEIVRRA 122 (136)
T ss_pred CCCEEEECCCCHHHH-HHHHHHHHCCCCCHHHHHHHH
T ss_conf 898675314665688-999888631799889999988
No 223
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=62.04 E-value=11 Score=18.26 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE-EEEECC--CHHH-HHHHHHHHHHH
Q ss_conf 9999999719951676405567446789999999997399872889-997058--7248-99999999864
Q gi|254781050|r 165 EAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIV-MVGEIG--GSAE-EEAAQFLKDEA 231 (300)
Q Consensus 165 e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Iv-l~gEiG--G~~E-~~aa~fi~~~~ 231 (300)
++..++.+.|+-...++.-+ |+ .+.++++.+++..+.|+ |-.|+| |... ++..+-++..+
T Consensus 102 ~~i~~ik~~g~k~GlAlnP~------T~-i~~l~~~l~~~~iD~VLlMsV~PGf~GQ~Fi~~~l~KI~~lr 165 (224)
T PTZ00170 102 AVARKIRAAGMQVGVALKPK------TP-AEELFPLIDAGLVDMVLVMTVEPGFGGQSFMHDMMPKVRQLR 165 (224)
T ss_pred HHHHHHHHHCCCEEEEECCC------CC-HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999997147645560799------98-799999971144578999855699876214588999999998
No 224
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=62.01 E-value=13 Score=17.86 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=16.8
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 9853995899805884688899999984017718940685
Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300)
.+..--|.+|..-+|...---.. ++-...+|+-.+|+
T Consensus 96 ~i~~~~kPvIaaV~G~a~GgG~~---lal~cD~~ia~~~a 132 (271)
T PRK05674 96 ALARLKIPTLAVVQGAAFGGALG---LISCCDMAIGAEDA 132 (271)
T ss_pred HHHHCCCCEEEEECCHHHEHHHH---HHHHCCEEECCCCC
T ss_conf 99968998999977830024688---87630622211156
No 225
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=61.86 E-value=13 Score=17.85 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=21.7
Q ss_pred HHHHHCCC-EECCCHHHHHHHHHHHHH
Q ss_conf 99998897-578898999999999984
Q gi|254781050|r 273 NAMKEAGI-CIAPSPARIGRSLVELLG 298 (300)
Q Consensus 273 ~al~~aGv-~v~~s~~el~~~l~~~l~ 298 (300)
+.|++||. +|.+|..||+.+++++=.
T Consensus 233 ~~l~~aGa~yvi~~i~dLp~~i~~i~~ 259 (267)
T PRK13478 233 AKLRAAGAHYVIDTIADLPAVIADIEA 259 (267)
T ss_pred HHHHHCCCCEEECCHHHHHHHHHHHHH
T ss_conf 999974999894489888999999999
No 226
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.64 E-value=13 Score=17.82 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=12.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 973999888843779999999862
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILY 31 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y 31 (300)
+-||+|.|+ |+.|.--++.....
T Consensus 8 gkkv~V~Gl-G~sG~aaa~~L~~~ 30 (468)
T PRK04690 8 GKRVALWGW-GREGRAAYRALRAQ 30 (468)
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHC
T ss_conf 797999834-78799999999966
No 227
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase; InterPro: IPR014732 Orotidine 5'-phosphate decarboxylase (OMPdecase) (4.1.1.23 from EC) , catalyzes the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional proteins. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme..
Probab=61.34 E-value=13 Score=17.79 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=54.6
Q ss_pred ECCCCCCCCCCCCHHHHCCC---C---CCCEE-EEECCHHHHHHHHHHHHHC----CCCEEEEEC-----CC------CC
Q ss_conf 72774577531407850357---8---86368-8621204567889999853----995899805-----88------46
Q gi|254781050|r 49 WTGGNVNVPVFTTVAEAKER---T---AANAS-VIYVPPSGAGDAIIESIEA----EIPLIVCIT-----EG------IP 106 (300)
Q Consensus 49 ~~g~~~~iPvy~sv~ea~~~---~---~~D~a-vI~VP~~~v~dai~Ea~~a----gik~iviit-----eG------ip 106 (300)
.+-+..||| |||+...+. - ++|.- +=.++.+...+++.|+++. + +.+..+| ++ +-
T Consensus 61 ~D~Kf~DIp--nTv~~~~~~G~y~~~~~~~~~~vH~~~G~~~~~~~~~~a~~~~~~~-~~ll~V~~ltS~g~~d~~~~~~ 137 (233)
T TIGR01740 61 LDLKFADIP--NTVKLQYESGVYKIKQGADMVNVHGVAGKESVEAAKEAASEFSTSG-RGLLAVTELTSKGSEDLELEYG 137 (233)
T ss_pred ECCEECCCC--HHHHHHHHCCCCEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCC-CEEEEEEEECCCCCHHHHHHHH
T ss_conf 120313661--5689997508641217745899720150789999998702566668-7379998751798133899988
Q ss_pred HHHHHHHHHHHHCCCCE-EEECCCCEEEC
Q ss_conf 88899999984017718-94068510135
Q gi|254781050|r 107 VLDMVRVKARLEKSSSR-LIGPNCPGILT 134 (300)
Q Consensus 107 ~~d~~~l~~~A~~~g~r-iiGPNc~Gii~ 134 (300)
+.-+.++.++|++.+-- |+||-|..--.
T Consensus 138 ~~~~~~~~~~A~~~~~~Gl~G~~~~~~~~ 166 (233)
T TIGR01740 138 EDTEEKVVEIAKEAKEFGLIGPVCSAEEA 166 (233)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEECCHHHH
T ss_conf 88999999998616665332101146778
No 228
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=61.31 E-value=9.4 Score=18.73 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCEEEEECCHHHHHHHHHHHH-HCCCCEEEEEC---CCC----------------CHHHH-HHHHHHHHCCCCEE
Q ss_conf 636886212045678899998-53995899805---884----------------68889-99999840177189
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESI-EAEIPLIVCIT---EGI----------------PVLDM-VRVKARLEKSSSRL 124 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~-~agik~iviit---eGi----------------p~~d~-~~l~~~A~~~g~ri 124 (300)
-|++--|-|..|=++...+.. ++|.|-+|+.| +|| |-+|. .++.+.||+.|+++
T Consensus 70 ~~~~~~F~p~~Fda~~Wa~lak~AGaKY~V~TaKHHDGF~lwdS~~s~~n~~~~gpkrDiv~el~~A~rk~Glk~ 144 (384)
T smart00812 70 KDFAPQFTAEKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKF 144 (384)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 899731597328999999999984995477521304774146788999866567887667999999998769769
No 229
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=61.06 E-value=13 Score=17.76 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=4.3
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+..+++
T Consensus 119 cD~~ia~~~a 128 (260)
T PRK08138 119 ADIIVAGESA 128 (260)
T ss_pred CCCCCCCCCC
T ss_conf 1011335444
No 230
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=60.80 E-value=13 Score=17.73 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=19.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 99805884688899999984017718940685101355510002001
Q gi|254781050|r 98 IVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 98 iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+|.--.|...---.+ ++-...+|+..+|+- +-.| ..++|+.|
T Consensus 97 vIAav~G~a~GgG~~---lal~cD~~ias~~a~-f~~p-e~~~Gl~p 138 (258)
T PRK06190 97 VIGAINGAAVTGGLE---LALACDILIASERAR-FADT-HARVGILP 138 (258)
T ss_pred EEEEECCCHHHHHHH---HHHCCCEEEECCCCE-EECC-CCCCCCCC
T ss_conf 999977703044389---872476688559818-9785-22128799
No 231
>PRK07777 aminotransferase; Validated
Probab=60.56 E-value=14 Score=17.70 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=65.9
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH--H-----HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCC
Q ss_conf 7531407850357886368862120--4-----56788999985399589980588------468889999998401771
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP--S-----GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~--~-----~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~ 122 (300)
-|.|.+-..+.+-. ..-++.||- . .-++.+++++....|.+++.+-+ ++..+..+|.++|+++++
T Consensus 116 ~P~y~~y~~~~~~~--g~~~v~vpl~~~~~~~~~d~~~l~~~~~~~tk~iil~~P~NPTG~v~s~e~l~~l~~la~~~~i 193 (386)
T PRK07777 116 EPYYDSYAAVIAMA--GAHRVAVPLVPDGRGFALDVDALRAAVTPRTRALIVNSPHNPTGTVLSAAELAAIAELAVEHDL 193 (386)
T ss_pred CCCCCCHHHHHHHH--CCEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99778769999983--8925613434778884669699997468777699979996988848889999999999864297
Q ss_pred EEEECCCCEEECCCC----H---------H-CCE-ECCCCCC-CC-CEEEEEECCCHHHHH
Q ss_conf 894068510135551----0---------0-020-0112357-78-679998054147899
Q gi|254781050|r 123 RLIGPNCPGILTPDS----C---------K-IGI-MPGSIFR-KG-SVGILSRSGTLTYEA 166 (300)
Q Consensus 123 riiGPNc~Gii~p~~----~---------~-lgi-~p~~~~~-pG-~VgivSqSG~l~~e~ 166 (300)
.||==++-+-+.-+. . + +-+ ..++.|. || ++|.+.-...+...+
T Consensus 194 ~ii~DE~Y~~l~f~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~R~G~~v~~~~li~~~ 254 (386)
T PRK07777 194 LVITDEVYEHLVFDGARHLPLATLPGMAERTVTISSAAKTFNVTGWKIGWACGPAPLIAAV 254 (386)
T ss_pred EEECCCCHHHHCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEEECHHHHHHH
T ss_conf 8865753775226887777365467865760243166676677662259998589999999
No 232
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=60.19 E-value=14 Score=17.66 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=6.3
Q ss_pred HHCCCCEEEECCC
Q ss_conf 4017718940685
Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300)
Q Consensus 117 A~~~g~riiGPNc 129 (300)
+-...+|+-.+++
T Consensus 129 alacD~rias~~a 141 (293)
T PRK08260 129 TLAMDIRLASTAA 141 (293)
T ss_pred HHCCCCCCCCCCC
T ss_conf 7603600102478
No 233
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=60.02 E-value=14 Score=17.64 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=12.3
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+..+|+- +..| ..++|+.|
T Consensus 117 al~~D~~ia~~~a~-f~~p-e~~~Gl~p 142 (261)
T PRK07657 117 ALACDFRIAAESAS-LGLT-ETTLAIIP 142 (261)
T ss_pred HHHCCCCCCCCCCE-EEEE-EEEECCCC
T ss_conf 88446030125540-4420-00046788
No 234
>PRK07337 aminotransferase; Validated
Probab=59.55 E-value=14 Score=17.59 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------5678899998539958998058846------88899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~g~r 123 (300)
-|.|..-...... .+..++.+|.. .-.+.+++++....|.+++.+-+=| ..+..++.++|+++++.
T Consensus 121 ~P~Yp~~~~~~~~--~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~tk~iil~nP~NPtG~v~s~~el~~i~~~a~~~~~~ 198 (388)
T PRK07337 121 DPSYPCNRHFVAA--AEGRPVLVPSGPAERFQLTADDVRTHWGERTRGVLLASPSNPTGTSIEPDELRRIVEAVRARGGF 198 (388)
T ss_pred CCCCHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCEE
T ss_conf 8873659999997--39889994037100677897999985786553999789979888562677743355443145808
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
+|==..-.
T Consensus 199 vIsDEiY~ 206 (388)
T PRK07337 199 TIVDEIYQ 206 (388)
T ss_pred EECCCCCC
T ss_conf 84576410
No 235
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=59.23 E-value=14 Score=17.56 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=14.3
Q ss_pred CCCEEEEECCCCC------------HHHHHHHHHHHHCCCCEEE
Q ss_conf 9958998058846------------8889999998401771894
Q gi|254781050|r 94 EIPLIVCITEGIP------------VLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 94 gik~iviiteGip------------~~d~~~l~~~A~~~g~rii 125 (300)
.-|.+++||+|-| .+|.++-+..+++.|+.++
T Consensus 103 ~rkiliviSDG~P~D~~~~~~~~~~~~D~~~av~e~~~~GI~~~ 146 (174)
T cd01454 103 KRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVF 146 (174)
T ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 66799998389976677788755389999999999998798899
No 236
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=59.06 E-value=14 Score=17.54 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=20.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 5778679998054147899999997199516764055
Q gi|254781050|r 148 FRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG 184 (300)
Q Consensus 148 ~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG 184 (300)
.+||..-+|-=.|.++...+..+... |.+ +|.+.
T Consensus 164 v~~g~~V~V~G~G~iGl~a~~~ak~~--Ga~-Vi~vd 197 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAA-VVAID 197 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCE-EEEEE
T ss_conf 89998899989748999999999985--997-99994
No 237
>TIGR01106 ATPase-IIC_X-K Na,H/K antiporter P-type ATPase, alpha subunit; InterPro: IPR005775 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the alpha subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H^+/K^+-ATPases (3.6.3.10 from EC) and Na^+/K^+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases , . These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H^+ or Na^+) in exchange for K^+. These ATPases contain an alpha subunit that is the catalytic component, and a regulatory beta subunit (IPR000402 from INTERPRO) that stabilizes the alpha/beta assembly . Different alpha and beta isoforms exist, permitting greater regulatory control. An example of a H^+/K^+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalization of potassium ions, using ATP hydrolysis to drive the pump . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0005524 ATP binding, 0015077 monovalent inorganic cation transmembrane transporter activity, 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015672 monovalent inorganic cation transport, 0016021 integral to membrane.
Probab=58.79 E-value=14 Score=17.66 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=33.1
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 3688621204567889999853995899805884688899999984017718940685
Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300)
=++.|--|...+|||+..|..+|||.++ +|..-|.. -+++|+.-|+.--|-.|
T Consensus 562 l~smidPPr~~vPdav~kCr~aGi~vim-vtGdhPit----akaia~~vGiis~~~e~ 614 (998)
T TIGR01106 562 LLSMIDPPRAAVPDAVAKCRSAGIKVIM-VTGDHPIT----AKAIAKSVGIISEGNET 614 (998)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCEEEEE-EECCCCHH----HHHHHHHCCEEECCCCH
T ss_conf 1110388644330467755225707999-81798514----77775112312257420
No 238
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=58.55 E-value=15 Score=17.48 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=36.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEEECCCCC
Q ss_conf 75314078503578863688621204567889999853--9958998058846
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEA--EIPLIVCITEGIP 106 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~a--gik~iviiteGip 106 (300)
|-+.+++.|+.+. +|+-++.||.++..+...+..+. .=..++..|-|+-
T Consensus 59 I~~t~dl~~~l~~--ad~iiiavPs~~~~~~l~~i~~~i~~~~~li~~tKGle 109 (325)
T PRK00094 59 LRATSDLAEALAD--ADLILVAVPSHAFREVLKQLKPLLRPDAPIVWATKGIE 109 (325)
T ss_pred EEEECCHHHHHHC--CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEE
T ss_conf 3897899999837--98499945769999999999864689974999765562
No 239
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=58.51 E-value=15 Score=17.48 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH-----HHHHHHHHHHHC---CCCEEEEECCC------CCHHHHHHHHHHHHCC
Q ss_conf 775314078503578863688621204-----567889999853---99589980588------4688899999984017
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS-----GAGDAIIESIEA---EIPLIVCITEG------IPVLDMVRVKARLEKS 120 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~-----~v~dai~Ea~~a---gik~iviiteG------ip~~d~~~l~~~A~~~ 120 (300)
.-|+|..-..+.+..+ .-++.+|-. .-+|..++++.. .+|.+++.+-+ .+.....++.++|+++
T Consensus 121 ~~P~Y~~~~~~~~~~g--~~~v~v~~~~~~~~~~~~~le~~~~~~~~k~k~lil~~P~NPtG~v~s~e~l~~i~~la~~~ 198 (390)
T PRK07309 121 PAPAYPGYEPIVNLVG--AEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALAEVLKKY 198 (390)
T ss_pred CCCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 3787441999999849--88999446201157899999999874888749999789989988878999999999999768
Q ss_pred CCEEEECCCCEEE
Q ss_conf 7189406851013
Q gi|254781050|r 121 SSRLIGPNCPGIL 133 (300)
Q Consensus 121 g~riiGPNc~Gii 133 (300)
++.||==.+-+-+
T Consensus 199 ~v~iisDEiY~~l 211 (390)
T PRK07309 199 DIFVISDEVYSEL 211 (390)
T ss_pred CEEEEEECCCHHC
T ss_conf 9899950551110
No 240
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=58.25 E-value=15 Score=17.45 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=20.4
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 63688621204567889999853995899805884688899999984017718
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r 123 (300)
.|+-+..-.|..- +.+..++|+..+.+-.|-. .+..++.+..|++|++
T Consensus 64 ~DvHLMv~~P~~~---i~~~~~~g~d~I~~H~Ea~--~~~~~~i~~ik~~g~k 111 (220)
T PRK05581 64 LDVHLMVENPDRY---VPDFAKAGADIITFHVEAS--EHIHRLLQLIKEAGIK 111 (220)
T ss_pred EEEEEEEECHHHH---HHHHHHCCCCEEEECCCCC--CCHHHHHHHHHHCCCC
T ss_conf 4789997188887---9999973998899816750--2799999999974997
No 241
>PRK07310 consensus
Probab=58.14 E-value=15 Score=17.44 Aligned_cols=76 Identities=8% Similarity=0.161 Sum_probs=51.2
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCCCCE
Q ss_conf 75314078503578863688621204------5678899998539958998058846------88899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-..+.+. .....+.+|.. .-.|.+..+....+|.+++.+-+=| ..+..+|.++|+++++.
T Consensus 122 ~P~Y~~y~~~~~~--~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~iil~~P~NPTG~v~s~~~l~~l~~~a~~~~i~ 199 (395)
T PRK07310 122 TPYWVSYSDQVKM--AEGVPVFVQAKEENHFKVTVEQLEAARTSKTKVVLLNSPSNPTGMIYSAEELRAIGEWAVEHDIL 199 (395)
T ss_pred CCCCCCHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEE
T ss_conf 7877546999997--59989997567445745049999974658974999899979856266354146776556526879
Q ss_pred EEECCCCEEE
Q ss_conf 9406851013
Q gi|254781050|r 124 LIGPNCPGIL 133 (300)
Q Consensus 124 iiGPNc~Gii 133 (300)
||==.+-+-+
T Consensus 200 visDEiY~~l 209 (395)
T PRK07310 200 ILADDIYGRL 209 (395)
T ss_pred EEECCCCEEE
T ss_conf 9943652100
No 242
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=58.08 E-value=15 Score=17.43 Aligned_cols=10 Identities=0% Similarity=0.112 Sum_probs=4.0
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+..+|+
T Consensus 154 cD~~iaa~~A 163 (308)
T PRK08272 154 CDQVIAADDA 163 (308)
T ss_pred CCCEEECCCC
T ss_conf 7800554888
No 243
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=57.60 E-value=15 Score=17.38 Aligned_cols=119 Identities=14% Similarity=0.222 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CCEEECCC-CCCCCCCCCHHHHCCCCCCCEEEEECC
Q ss_conf 79739998888437799999998626981899765899------88687277-457753140785035788636886212
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK------GSTYWTGG-NVNVPVFTTVAEAKERTAANASVIYVP 79 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk------gg~~~~g~-~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300)
.++||++.|+ |.-|+--+++.... |-.=+.-+-+.+ +.|++..+ ..+.|-=....+-..+-++.+.|....
T Consensus 18 ~~s~Vli~G~-~glg~Ei~Knlvl~-Gv~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~~~~l~~lNp~v~v~~~~ 95 (286)
T cd01491 18 QKSNVLISGL-GGLGVEIAKNLILA-GVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HHCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7592999998-76399999999973-996599995996886776347225777857888999999999648982589635
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 0456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
...-. +-. ..- -+||.|+ .+..+..++.++||++++..+-.+|.|+.-
T Consensus 96 ~~~~~----~~~-~~f-dvVv~t~-~~~~~~~~iN~~cR~~~i~Fi~~~~~G~~G 143 (286)
T cd01491 96 GPLTT----DEL-LKF-QVVVLTD-ASLEDQLKINEFCHSPGIKFISADTRGLFG 143 (286)
T ss_pred CCCCH----HHH-CCC-CEEEEEC-CCHHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 77788----885-388-8899918-998999999888877598199950577579
No 244
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=57.19 E-value=16 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=5.8
Q ss_pred HHCCCCEEEECCC
Q ss_conf 4017718940685
Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300)
Q Consensus 117 A~~~g~riiGPNc 129 (300)
|-....|+..|++
T Consensus 121 ALacd~Rias~~a 133 (715)
T PRK11730 121 VLATDYRVASPTA 133 (715)
T ss_pred HHHCCEEEECCCC
T ss_conf 9968999963998
No 245
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=56.71 E-value=16 Score=17.29 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7889999853995899805884------6888999999840177189406851
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCP 130 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~ 130 (300)
.|.++..+....|++|++.-+= +.....+|.++|+++++.||==..-
T Consensus 271 iedLe~kIT~kTKAIVInNPNNPTGAVyS~E~LeeIaeiArehdLiIISDEIY 323 (518)
T PRK13355 271 IDDIRSKITSKTKAIVIINPNNPTGALYPKEVLQQIVDIAREHQLIIFSDEIY 323 (518)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCH
T ss_conf 99998535715579999689898887889999999999999859699962302
No 246
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=56.24 E-value=16 Score=17.24 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=50.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300)
||+|.|--|||-.+--+........++- +.||-+|..-..+ . .++ -... .+.+.+
T Consensus 1 kILvIGsGgREHAi~~~l~~s~~~~~l~--~~pgN~gi~~~~~---------------~--~~i-----~~~d-~~~i~~ 55 (99)
T pfam02844 1 KVLVVGSGGREHALAWKLAQSPRVEKVY--VAPGNPGTAQLAK---------------N--VNI-----DITD-FEALAD 55 (99)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEE--EECCCCHHHHHCE---------------E--ECC-----CCCC-HHHHHH
T ss_conf 9899878879999999996499977699--9589815777475---------------0--145-----8447-999999
Q ss_pred -HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf -98539958998058846888999999840177189406851
Q gi|254781050|r 90 -SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCP 130 (300)
Q Consensus 90 -a~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300)
|.+..+.+++|=.|- | ...-+....+++|+.++||+--
T Consensus 56 ~~~~~~idlviiGPE~-p--L~~Gl~D~l~~~gi~vfGP~k~ 94 (99)
T pfam02844 56 FAKEENIDLVVVGPEA-P--LVAGIVDALRAAGIPVFGPSKA 94 (99)
T ss_pred HHHHCCCCEEEECCCH-H--HHHHHHHHHHHCCCEEECCCHH
T ss_conf 9998197499989606-7--7878899998689917992868
No 247
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=55.70 E-value=8.9 Score=18.89 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=56.6
Q ss_pred CCCCC--HHHHHHHHHCCCCCC-EEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----CCCCEE-EE
Q ss_conf 46789--999999997399872-88999705872489999999986422675526899843015765----532200-11
Q gi|254781050|r 188 VKGTE--FIDVLELFLADEATE-SIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPG----RTMGHA-GA 259 (300)
Q Consensus 188 ~~G~~--~~d~L~~~~~Dp~T~-~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g----~~~gHa-GA 259 (300)
++|.+ +-++.+....=-.|+ -|++.||.| +--+..|++|-.. .....||.|..-+..- |+. .=|||. ||
T Consensus 188 lIG~S~~m~~l~~~i~~vA~sd~pVLI~GEtG-TGKelvAr~IH~~-S~R~~~Pfv~vNCaal-pe~l~EseLFGh~kGa 264 (510)
T PRK05022 188 MIGQSPAMQQLKKEIEVVAASDLNVLITGETG-VGKELVARAIHQA-SPRAVKPLVYLNCAAL-PESLAESELFGHVKGA 264 (510)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEECCCC-CCHHHHHHHHHHC-CCCCCCCCEEEECCCC-CHHHHHHHHCCCCCCC
T ss_conf 52089999999999999968999889889898-1399999999966-8878998578889999-8567899865977788
Q ss_pred ECCCCCCCHHHHHHHHHHC--CCEECCCHHHHHHHHHHHH
Q ss_conf 2248888999999999988--9757889899999999998
Q gi|254781050|r 260 VISGGKGGAEDKINAMKEA--GICIAPSPARIGRSLVELL 297 (300)
Q Consensus 260 i~~~~~g~a~~k~~al~~a--Gv~v~~s~~el~~~l~~~l 297 (300)
..+.. ..+.-.|++| |-..-|.+++|+..+...|
T Consensus 265 FtGA~----~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KL 300 (510)
T PRK05022 265 FTGAI----SNRSGKFELADGGTLFLDEIGELPLALQAKL 300 (510)
T ss_pred CCCCC----CCCCCCEEECCCCEEEEECHHHCCHHHHHHH
T ss_conf 68865----5678810177898798757454999999999
No 248
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=55.63 E-value=16 Score=17.18 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECC----CHH-H---------HHHHHHHHH-----HHHCCCCCCEEEEEEEECCCCC
Q ss_conf 999999997399872889997058----724-8---------999999998-----6422675526899843015765
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGEIG----GSA-E---------EEAAQFLKD-----EAKRGRKKPIVGFVAGKTAPPG 251 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gEiG----G~~-E---------~~aa~fi~~-----~~~~~~~KPVva~~~GrtAp~g 251 (300)
+.+.++.+.+|++.++|++.++-. |.+ . ....++.+. ..-....||+|+.+-|.....|
T Consensus 31 l~~~~~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaai~G~a~GgG 108 (195)
T cd06558 31 LAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGG 108 (195)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 999999997499957999974998704799758887266666889999999999999999789999998688527775
No 249
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=55.51 E-value=17 Score=17.16 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCCCCHH----HHCCCCCCCEEEEECCHHH----HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 75314078----5035788636886212045----678899998539958998058846888999999840177189406
Q gi|254781050|r 56 VPVFTTVA----EAKERTAANASVIYVPPSG----AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 56 iPvy~sv~----ea~~~~~~D~avI~VP~~~----v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300)
-|.|..+. ++.++.+.++.+...+... -...+..+++.++..+++..-. .......++.+++.|+.++--
T Consensus 11 npf~~~~~~g~e~~a~~~G~~v~v~~~~~~~d~~~q~~~i~~~i~~~vdgii~~p~~--~~~~~~~~~~a~~~gIpvv~~ 88 (275)
T cd06320 11 NEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPIS--DVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--CHHHHHHHHHHHHCCCEEEEE
T ss_conf 889999999999999974998999968997589999999999997499879876788--065699999998679909992
Q ss_pred C
Q ss_conf 8
Q gi|254781050|r 128 N 128 (300)
Q Consensus 128 N 128 (300)
|
T Consensus 89 d 89 (275)
T cd06320 89 N 89 (275)
T ss_pred C
T ss_conf 6
No 250
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=55.49 E-value=17 Score=17.16 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=82.5
Q ss_pred HHHHHHCCCCEEEEECCC-CCCEEECCCCCCCCCCCCHHHHCCCCCCCEE------EEECCHHHHHHHHHHHHHC-CCCE
Q ss_conf 999862698189976589-9886872774577531407850357886368------8621204567889999853-9958
Q gi|254781050|r 26 EQAILYCQTQVVGGIHPK-KGSTYWTGGNVNVPVFTTVAEAKERTAANAS------VIYVPPSGAGDAIIESIEA-EIPL 97 (300)
Q Consensus 26 ~~~~~y~gt~ivagV~Pg-kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~a------vI~VP~~~v~dai~Ea~~a-gik~ 97 (300)
+...+|...+.+..=.|| |+|..+.. -.++-..|.+- ..|++ =.+-|--...+|-..+.+. |.+.
T Consensus 4 ~aL~~y~~~~~~~fh~PGHk~g~~~~~-----~~~~~~g~~~~--~~D~te~~~lD~L~~p~g~I~eAq~laA~~~ga~~ 76 (294)
T cd00615 4 EALKEYAKRGIISFHVPGHKGGRGFRK-----SFYEFYGENLF--KADVTELTGLDDLLDPTGPIKEAQELAARAFGAKH 76 (294)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCH-----HHHHHHHCCHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999818992374697789877688-----89998701201--10135888898988987199999999999839996
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 99805884688899999984017718940685101355510002001123577867999805414789999999719951
Q gi|254781050|r 98 IVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQ 177 (300)
Q Consensus 98 iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~ 177 (300)
....+-|-..--..-+...++.....++.=||===+--+-...|+.|-.+.. -....+|+
T Consensus 77 s~flvnGsT~g~~a~i~a~~~~gd~vlv~RN~HkSv~~gl~l~g~~Pvyl~p--------------------~~~~~~gi 136 (294)
T cd00615 77 TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKP--------------------ERNPYYGI 136 (294)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEC--------------------CCCCCCCC
T ss_conf 6998277269999999983289998998265189999999986984899606--------------------43555695
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 6764055674467899999999973998728899970-587248999999998642267552689
Q gi|254781050|r 178 STAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVG 241 (300)
Q Consensus 178 S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva 241 (300)
. .|.+..++-+.+.+.|+-+++++.-- .-|.. .|..+.++.+. ...+|+++
T Consensus 137 ~----------~~i~~~~~~~al~~~p~~kav~lt~PtY~G~~-~Dl~~i~~~~h--~~~~~llV 188 (294)
T cd00615 137 A----------GGIPPETFKKALIEHPDAKAAVITNPTYYGIC-YNLRKIVEEAH--HRGLPVLV 188 (294)
T ss_pred C----------CCCCHHHHHHHHHHCCCCCEEEEECCCCCEEE-ECHHHHHHHHH--HCCCEEEE
T ss_conf 3----------89999999999985899658999779988776-68999999984--04997999
No 251
>PRK06107 aspartate aminotransferase; Provisional
Probab=55.47 E-value=17 Score=17.16 Aligned_cols=73 Identities=8% Similarity=0.105 Sum_probs=47.0
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH------HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCC-CC
Q ss_conf 7531407850357886368862120------4567889999853995899805884------688899999984017-71
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP------SGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKS-SS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~------~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~-g~ 122 (300)
-|.|.+-...... .+.-.+.+|- ..-+|++++++..+.|.+++.+-+= +..+..+|.++|+++ ++
T Consensus 124 ~P~Y~~y~~~~~~--~g~~~~~~p~~~~~~~~~d~d~le~~~~~~tk~iil~~P~NPTG~v~s~~~l~~i~~i~~~~~~i 201 (402)
T PRK06107 124 APYWVSYPDMVLA--NDGTPVIVPCPEEDGFKLTAEALEAAITPRTRWLILNAPSNPTGAAYSRDELRALADVLLRHPHV 201 (402)
T ss_pred CCCCCCHHHHHHH--CCCCEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 6866537999998--39956736878234875899999974564766999889989899665348999998877524893
Q ss_pred EEEECCCC
Q ss_conf 89406851
Q gi|254781050|r 123 RLIGPNCP 130 (300)
Q Consensus 123 riiGPNc~ 130 (300)
.||==.+-
T Consensus 202 ~iisDEiY 209 (402)
T PRK06107 202 LVLTDDIY 209 (402)
T ss_pred EEEEEHHH
T ss_conf 28622202
No 252
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=55.27 E-value=17 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=6.7
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 88999985399589980
Q gi|254781050|r 85 DAIIESIEAEIPLIVCI 101 (300)
Q Consensus 85 dai~Ea~~agik~ivii 101 (300)
+++.++-+..++.+|+-
T Consensus 40 ~~l~~~~d~~~r~vVl~ 56 (260)
T PRK07659 40 EALKEVAESSAHIVVLR 56 (260)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 99999757998699997
No 253
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=54.75 E-value=17 Score=17.09 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCCCCHHH----HCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 753140785----03578863688621204----5678899998539958998058846888999999840177189406
Q gi|254781050|r 56 VPVFTTVAE----AKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 56 iPvy~sv~e----a~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300)
-|-|..+.+ +.++.++++-++. |.. .=.+.+..++..|+..+++..-- ..-....++.|++.|+.++-=
T Consensus 11 ~pfw~~v~~Gae~aA~e~G~~v~~~~-~~~~D~~~Q~~~ie~~Ia~gvDaIii~p~d--~~a~~~~i~~A~~aGIpVv~~ 87 (298)
T cd06302 11 IPYFNRMEEGAKEAAKELGVDAIYVG-PTTADAAGQVQIIEDLIAQGVDAIAVVPND--PDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCCEEEEE
T ss_conf 86999999999999999799999988-998999999999999997399889990687--788899999998679869982
Q ss_pred CC
Q ss_conf 85
Q gi|254781050|r 128 NC 129 (300)
Q Consensus 128 Nc 129 (300)
|+
T Consensus 88 Ds 89 (298)
T cd06302 88 DS 89 (298)
T ss_pred CC
T ss_conf 68
No 254
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=54.67 E-value=17 Score=17.08 Aligned_cols=10 Identities=0% Similarity=-0.024 Sum_probs=4.8
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+..+++
T Consensus 116 cD~~ia~~~a 125 (257)
T PRK05862 116 CDIIIAADTA 125 (257)
T ss_pred CCEEECCCCC
T ss_conf 4531304786
No 255
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=54.49 E-value=17 Score=17.06 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=59.3
Q ss_pred CCCCEEEEEECCCHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 77867999805414789----99999971995167640556744678999999999739987288999705872489999
Q gi|254781050|r 149 RKGSVGILSRSGTLTYE----AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAA 224 (300)
Q Consensus 149 ~pG~VgivSqSG~l~~e----~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa 224 (300)
.=--|++|...+.-+.. +...+.++|+=++....+...... .++.+.+.-+.+.+..++|+++++ +.++.
T Consensus 173 ~W~~V~~V~sdd~yG~~~~~~~~~~~~~~~ICia~~~~ip~~~~~-~~~~~ii~~l~~~~~a~VVVlf~~-----~~~~~ 246 (458)
T cd06375 173 NWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADR-KSYDSVIRKLLQKPNARVVVLFTR-----SEDAR 246 (458)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHHHHHHHHHHCCCCCEEEEEEE-----CHHHH
T ss_conf 973999999448278999999999998779627887765778766-679999999986389829999973-----77999
Q ss_pred HHHHHHHHCCCCCCEEEEEEE
Q ss_conf 999986422675526899843
Q gi|254781050|r 225 QFLKDEAKRGRKKPIVGFVAG 245 (300)
Q Consensus 225 ~fi~~~~~~~~~KPVva~~~G 245 (300)
.+++++.+...+| .|++-
T Consensus 247 ~ll~~a~~~~~t~---~WI~s 264 (458)
T cd06375 247 ELLAAAKRLNASF---TWVAS 264 (458)
T ss_pred HHHHHHHHHCCEE---EEEEC
T ss_conf 9999999858808---99982
No 256
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=54.01 E-value=17 Score=17.01 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHCCCCCCCEEEEECCHHH---HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 5035788636886212045---6788999985399589980588468889999998401771894068
Q gi|254781050|r 64 EAKERTAANASVIYVPPSG---AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 64 ea~~~~~~D~avI~VP~~~---v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPN 128 (300)
+..++.++|+-|.+.|--. ..--+.-|+++|+..+-+|..-+.-.. +..+..++.|+-++|-.
T Consensus 117 ~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~aFVN~iP~fIAsdp--~~~~~F~e~glpi~GDD 182 (351)
T TIGR03450 117 QALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDP--EWAKKFTDAGVPIVGDD 182 (351)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCHHCCCCH--HHHHHHHHCCCCEECCC
T ss_conf 9998628746897157686699999999889849817833541015898--99999998799787253
No 257
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=53.94 E-value=18 Score=17.00 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCEEEE
Q ss_conf 8636886212045678899998539958998058846888-99999984017718940
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLD-MVRVKARLEKSSSRLIG 126 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d-~~~l~~~A~~~g~riiG 126 (300)
...+++..+|.....+-+..|.+.|++.+-+.+ +..+.| ..+..+.||+.|+.+.|
T Consensus 77 ~aki~~l~~pg~~~~~dl~~A~~~gv~~vria~-~~tead~~~~~i~~ar~~G~~v~~ 133 (337)
T PRK08195 77 QAKLATLLLPGIGTIEDLKMAYDAGVRVVRVAT-HCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 283789963565558889999957989799986-314887799999999977993999
No 258
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=53.69 E-value=18 Score=16.98 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=44.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHCCCCEEEECC
Q ss_conf 863688621204567889999853995899805884688----89999998401771894068
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL----DMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~----d~~~l~~~A~~~g~riiGPN 128 (300)
+.++=+|.-|.+...+.+++|++.|++.+-.=--.-+.+ ...+++++|+++|+.+|=-.
T Consensus 144 ~~~Lylit~~~~~l~~~Ve~AL~gGv~ivQlR~K~~~~~~~l~~A~~l~~Lc~~y~a~fIIND 206 (345)
T PRK02615 144 DARLYLITSPSEDLLEVVEAALKAGVKLVQYRDKTGDDRERLEEAKQLKELCKRYGALFIVND 206 (345)
T ss_pred HCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 588899968963499999999975998898305899999999999999999999599489819
No 259
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.58 E-value=17 Score=17.16 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=9.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3999888843779999999862
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY 31 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y 31 (300)
||+|.|+ |+.|.--.+.....
T Consensus 8 ~v~V~Gl-G~sG~s~~~~L~~~ 28 (438)
T PRK03806 8 NVVIIGL-GLTGLSCVDFFLAR 28 (438)
T ss_pred EEEEEEE-CHHHHHHHHHHHHC
T ss_conf 8999945-78889999999978
No 260
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=53.56 E-value=18 Score=16.96 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5678899998539---958998058846888999999840177
Q gi|254781050|r 82 GAGDAIIESIEAE---IPLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 82 ~v~dai~Ea~~ag---ik~iviiteGip~~d~~~l~~~A~~~g 121 (300)
.|++.+..|.++| ||.=+|+-.|+-..+-..|++++++++
T Consensus 145 ~Vl~Gi~aA~~~Gl~~vKlN~V~~~G~Nd~Ei~~l~~~~~~~~ 187 (346)
T TIGR02666 145 QVLAGIDAALEAGLKPVKLNTVVLRGVNDDEIVDLAEFAKERG 187 (346)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999999659983147667627889778999999997579
No 261
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebsiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in Escherichia coli. Based on this latter finding, it is suggested that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme .; GO: 0006810 transport, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=53.46 E-value=5.9 Score=20.01 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=49.1
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCHHH--HHHHHHHHHHHHCCCCCCEE-----------EEEEEECCCCCCCCCE-----
Q ss_conf 99999973998728899970587248--99999999864226755268-----------9984301576553220-----
Q gi|254781050|r 195 DVLELFLADEATESIVMVGEIGGSAE--EEAAQFLKDEAKRGRKKPIV-----------GFVAGKTAPPGRTMGH----- 256 (300)
Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gEiGG~~E--~~aa~fi~~~~~~~~~KPVv-----------a~~~GrtAp~g~~~gH----- 256 (300)
|-|-.+-+|-+|.--+.| |=|-+| ++..+.|+.+- .| ...+|...+.||+|||
T Consensus 190 dT~Gl~I~D~~~~k~~~Y--iPGca~vt~~L~a~~~~Ad-------~v~fDGTlW~DDEM~~~Gvg~K~G~~MGH~~~sG 260 (314)
T TIGR02108 190 DTLGLLIEDGKTGKRLFY--IPGCAEVTDDLKARMAGAD-------LVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSISG 260 (314)
T ss_pred CEEEEEEEECCCCCEEEE--ECCCCCCCHHHHHHHHCCC-------EEEECCCCCCCHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 704899975367654787--0356663868898986177-------3775474023334641147873343125165368
Q ss_pred -EEEECC----------------C----CCCCHHHHHHHHHHCCCEECCC
Q ss_conf -011224----------------8----8889999999999889757889
Q gi|254781050|r 257 -AGAVIS----------------G----GKGGAEDKINAMKEAGICIAPS 285 (300)
Q Consensus 257 -aGAi~~----------------~----~~g~a~~k~~al~~aGv~v~~s 285 (300)
.|+|+. . ...|+| .++++++|+.||..
T Consensus 261 ~gG~~~~La~~~~~RKVLiHINNTNPiL~e~S~E--ra~~~a~Gw~VA~D 308 (314)
T TIGR02108 261 EGGSLAVLADLEIARKVLIHINNTNPILDEDSPE--RAEVEAAGWEVAHD 308 (314)
T ss_pred CCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCHH--HHHHHHCCCEECCC
T ss_conf 7845565306898877898622777212446744--78886468602157
No 262
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=53.41 E-value=15 Score=17.48 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 407850357886368862120456788999985399589980588468
Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300)
Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300)
+-+.+|.+ .+.+-++|+|.+++-+.......+++...++ |||.
T Consensus 26 ~lc~~A~~---~~~aaVCV~P~~V~~a~~~L~~s~v~v~tVi--gFP~ 68 (221)
T PRK00507 26 KLCEEAKE---YGFASVCVNPSYVKLAAELLKGSDVKVCTVI--GFPL 68 (221)
T ss_pred HHHHHHHH---HCCCEEEECHHHHHHHHHHHCCCCCCEEEEE--ECCC
T ss_conf 99999998---7994899898999999998448998655781--3699
No 263
>PRK06855 aminotransferase; Validated
Probab=53.28 E-value=18 Score=16.94 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=35.7
Q ss_pred HHHHHHHHH--CCCCEEEEECCC------CCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 788999985--399589980588------46888999999840177189406851013
Q gi|254781050|r 84 GDAIIESIE--AEIPLIVCITEG------IPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 84 ~dai~Ea~~--agik~iviiteG------ip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
.+.+.+++. ..+|.+++++-+ ++..+..+|.++|+++++.||-=..-.-+
T Consensus 159 ~e~l~~~i~~~~~~kaiii~nP~NPTG~v~s~e~l~~i~~~a~~~~i~visDEiY~~l 216 (433)
T PRK06855 159 LDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIIADEIYANI 216 (433)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9999999866997249998389999886679999999999999759869863101124
No 264
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.15 E-value=18 Score=16.92 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577--5314078503578863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
||.|.|. |--|..-++...+++-..-|.|+.+.+.-.... ...++ -++++..|+.. ++|+-|+++|+..+.+.+
T Consensus 8 ~I~IiGl-GLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A-~~~g~id~~~~~~~e~~~--~~DlIilatPv~~~~~vl 83 (307)
T PRK07502 8 RVALIGL-GLIGSSLARAIRRQGLAGEIVGAARSAETRARA-RELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAVA 83 (307)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-HHCCCCCHHCCCHHHHHC--CCCEEEEECCHHHHHHHH
T ss_conf 6899927-879999999998549985799984999999999-986997511277766404--589799917899999999
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC---CCCEEEECCCCEEECCCCHHCCEEC--CCCCCCCCEEEEEEC
Q ss_conf 99985399589980588468889999998401---7718940685101355510002001--123577867999805
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEK---SSSRLIGPNCPGILTPDSCKIGIMP--GSIFRKGSVGILSRS 159 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~---~g~riiGPNc~Gii~p~~~~lgi~p--~~~~~pG~VgivSqS 159 (300)
.+.... ++.=.++|+=-..+. .+.+.+++ .+.+.||--= -.|.-+-|+.. ..+|+ |..-+++-.
T Consensus 84 ~~l~~~-l~~~~ivTDvgSvK~--~I~~~~~~~~~~~~~FVg~HP----mAGsE~sG~~~A~~~LF~-~~~~iltp~ 152 (307)
T PRK07502 84 AEIAPH-LKPGAIVTDVGSVKA--SVIAAMAPHLPEGVHFIPGHP----LAGTEHSGPDAGFAELFE-NRWCILTPP 152 (307)
T ss_pred HHHHHH-CCCCCEEEECCCCHH--HHHHHHHHHCCCCCCEECCCC----CCCCCCCCCCHHHHHHHC-CCEEEEECC
T ss_conf 999855-589968996632118--999999985677783672688----767887551010014743-870899679
No 265
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=52.90 E-value=18 Score=16.90 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCCCEEEEECCH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 886368862120----456788999985399589980588468889999998401771894
Q gi|254781050|r 69 TAANASVIYVPP----SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 69 ~~~D~avI~VP~----~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.+.+.-||++.. ..+..++.+|.++|.+.++|-+.| +|.+.|++++...+
T Consensus 76 v~~~tLVIavSySGnTeETL~a~~~A~~rga~vi~ItsGG-------~L~~~a~~~~~~~i 129 (328)
T PRK08674 76 VDRKTLVIAVSYSGNTEETLSAVEQAKKRGAKIIAITSGG-------KLAEMAKEKGVPVI 129 (328)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC-------CHHHHHHHCCCCEE
T ss_conf 5888579998289997799999999997599589994897-------06789987799889
No 266
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=52.64 E-value=18 Score=16.87 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 84017718940685101355510002001
Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
++-...+|+..+++- +.....++|+.|
T Consensus 113 lalacD~ria~~~a~--f~~p~~~lGl~p 139 (254)
T PRK05870 113 LALAADVRIAGPAAL--FDPRFQKLGLHP 139 (254)
T ss_pred HHHCCCEEEECCCCE--EECCCCCCCCCC
T ss_conf 664176899859978--835202772088
No 267
>PRK10083 putative dehydrogenase; Provisional
Probab=52.52 E-value=18 Score=16.86 Aligned_cols=12 Identities=0% Similarity=0.047 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254781050|r 285 SPARIGRSLVEL 296 (300)
Q Consensus 285 s~~el~~~l~~~ 296 (300)
.++|+.+.++.+
T Consensus 312 ~L~~~~~A~~~~ 323 (339)
T PRK10083 312 DFQHVADAIELF 323 (339)
T ss_pred EHHHHHHHHHHH
T ss_conf 989999999998
No 268
>KOG3009 consensus
Probab=52.50 E-value=18 Score=16.86 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH--HHHHHHH---CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 541478999999971995167640556744678999--9999997---39987288999705872489999999986422
Q gi|254781050|r 159 SGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFI--DVLELFL---ADEATESIVMVGEIGGSAEEEAAQFLKDEAKR 233 (300)
Q Consensus 159 SG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~--d~L~~~~---~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~ 233 (300)
-|+...-+++.+.+.|--.-.+-.+|+|- +.+|. .-+++.+ +=-+-+-|.|-+- .++.-.++-+++ .
T Consensus 376 ~GGVarN~A~a~~~lg~d~~liSavG~d~--n~~~~~~~~~~~~e~~~dl~~a~~I~~DsN---iS~~~Ma~il~a---k 447 (614)
T KOG3009 376 MGGVARNHADALARLGCDSVLISAVGDDN--NGHFFRQNSHKIVESNEDLLSADFILLDSN---ISVPVMARILEA---K 447 (614)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEECCCC--CCHHHHHHHHHHHHHHHHHHCCCEEEECCC---CCHHHHHHHHHH---H
T ss_conf 12055658899987268715888743677--505566633556653335522888998588---888999999875---5
Q ss_pred CCCCCEEE-----EEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEC
Q ss_conf 67552689-----984301576553220011224888899999999998897578
Q gi|254781050|r 234 GRKKPIVG-----FVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIA 283 (300)
Q Consensus 234 ~~~KPVva-----~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~ 283 (300)
..+|||+- +|.+.-- ...--|+|-. -.-.+...++|.+..-+.+-
T Consensus 448 ~~k~~V~fEPTd~~k~~K~f----k~l~v~~i~~-i~PN~~Ell~a~k~~~v~~n 497 (614)
T KOG3009 448 KHKKQVWFEPTDIDKVKKVF----KTLLVGAITA-ISPNANELLKAAKLCHVSVN 497 (614)
T ss_pred HCCCCEEECCCCCHHHHHHH----HHCCEEEEEE-ECCCHHHHHHHHHCCCEEEC
T ss_conf 30672686578740444044----4111036775-18898999998645865547
No 269
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=52.01 E-value=19 Score=16.81 Aligned_cols=140 Identities=26% Similarity=0.369 Sum_probs=70.9
Q ss_pred CCCEEEECCCCEEECCC--CHHCCEECCCCCCCCCEEEEEECCCHHHHHH---HHHHHCCCCEEEE-EECCC-CCCCCCC
Q ss_conf 77189406851013555--1000200112357786799980541478999---9999719951676-40556-7446789
Q gi|254781050|r 120 SSSRLIGPNCPGILTPD--SCKIGIMPGSIFRKGSVGILSRSGTLTYEAV---FQTSQEGLGQSTA-VGIGG-DPVKGTE 192 (300)
Q Consensus 120 ~g~riiGPNc~Gii~p~--~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~---~~~~~~g~G~S~~-VsiG~-D~~~G~~ 192 (300)
.=+|+..-+-+=++.-+ .+++| -++..+.|+=-.+--||-+..+.+ ..+.++ |+|.. |.+-. .| .|
T Consensus 161 ~Y~Rl~R~~~p~~~~~~~~~F~iG--ka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~--GIsa~Vi~m~tIKP---iD 233 (312)
T COG3958 161 VYMRLGRGKVPVVVDEGGYTFEIG--KANVLRDGSDLTIIATGVMVAEALEAAEILKKE--GISAAVINMFTIKP---ID 233 (312)
T ss_pred EEEEECCCCCCCEECCCCCEEECC--CEEEEECCCCEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCC---CC
T ss_conf 799805778885033787257336--346764177269995171669999999999866--98879986476677---87
Q ss_pred HHHHHHHHHCCCCCCEEEEEEE---CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 9999999973998728899970---5872489999999986422675526899843015765532200112248888999
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE---IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE 269 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE---iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~ 269 (300)
..-++.+ -.+|+.|+-.-| +||.-. ..++++.+. -|+..-.-|. | .++|++|...
T Consensus 234 ~~~i~~~---A~~t~~IvT~EeHsi~GGlGs-aVAEvlse~------~p~~~~riGv--p--~~fg~sg~~~-------- 291 (312)
T COG3958 234 EQAILKA---ARETGRIVTAEEHSIIGGLGS-AVAEVLSEN------GPTPMRRIGV--P--DTFGRSGKAD-------- 291 (312)
T ss_pred HHHHHHH---HHHCCCEEEEECCEEECCHHH-HHHHHHHHC------CCCCEEEECC--C--CHHCCCCCHH--------
T ss_conf 8999998---742583899863322356269-999999861------9963688327--7--3121223569--------
Q ss_pred HHHHHHHHCCCEECCCHHHHHHHHHH
Q ss_conf 99999998897578898999999999
Q gi|254781050|r 270 DKINAMKEAGICIAPSPARIGRSLVE 295 (300)
Q Consensus 270 ~k~~al~~aGv~v~~s~~el~~~l~~ 295 (300)
+.|+..|. +++.+.+...+
T Consensus 292 ---~Ll~~ygl----~~~~I~~~v~~ 310 (312)
T COG3958 292 ---ELLDYYGL----DPESIAARVLE 310 (312)
T ss_pred ---HHHHHHCC----CHHHHHHHHHH
T ss_conf ---99998199----99999999996
No 270
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.51 E-value=19 Score=16.76 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=13.3
Q ss_pred HHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHCCC
Q ss_conf 99985399589980-58846888999999840177
Q gi|254781050|r 88 IESIEAEIPLIVCI-TEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 88 ~Ea~~agik~ivii-teGip~~d~~~l~~~A~~~g 121 (300)
..|++..+..+++- ..|=-..+..++++.+|+.|
T Consensus 57 ~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 57 RAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 99986479889997344047899999999999819
No 271
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.23 E-value=14 Score=17.56 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=9.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3999888843779999999862
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY 31 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y 31 (300)
||+|.|+ |+.|.--++.....
T Consensus 9 kvlV~Gl-G~sG~s~a~~L~~~ 29 (438)
T PRK04663 9 NVVVVGL-GITGLSVVKHLRKT 29 (438)
T ss_pred EEEEEEE-CHHHHHHHHHHHHC
T ss_conf 4999906-78589999999966
No 272
>TIGR02408 ectoine_ThpD ectoine hydroxylase; InterPro: IPR012774 Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.; GO: 0016725 oxidoreductase activity acting on CH or CH2 groups.
Probab=51.02 E-value=7 Score=19.56 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=21.0
Q ss_pred HHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC
Q ss_conf 999984017718940685101355510002001123577867999805
Q gi|254781050|r 112 RVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS 159 (300)
Q Consensus 112 ~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS 159 (300)
+++..||+ |+|-. ++. +++|++.+|++ +.-++.=.|
T Consensus 94 rv~~~ARQ----iLGSd---VYv-HQsRiN~kPGF----~g~gFYWHS 129 (278)
T TIGR02408 94 RVVNAARQ----ILGSD---VYV-HQSRINMKPGF----KGTGFYWHS 129 (278)
T ss_pred HHHHHHHH----HHCCC---EEE-EEEEECCCCCC----CCCCCEECC
T ss_conf 46666656----51561---244-32110058788----875442107
No 273
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=50.85 E-value=20 Score=16.69 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=6.5
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 677179739998888
Q gi|254781050|r 3 ILVDKNTKVLVQGLT 17 (300)
Q Consensus 3 il~~~~t~vivqGit 17 (300)
|++.++..|.+.-+.
T Consensus 4 i~~e~~~~va~Itln 18 (256)
T TIGR03210 4 ILYEKRNGIAWIMIN 18 (256)
T ss_pred EEEEEECCEEEEEEC
T ss_conf 799999999999973
No 274
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=50.60 E-value=20 Score=16.67 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 22001122488889999999999889757889899999999998
Q gi|254781050|r 254 MGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELL 297 (300)
Q Consensus 254 ~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l 297 (300)
-||.|.+..-...++..-...|.+....-..++.++-..+.+.+
T Consensus 243 TGH~Gs~tTiHA~sa~~al~Rl~~l~~~~~~~~~~v~~~ia~av 286 (320)
T PRK13894 243 TGHEGGAATLHANNAKAGLDRLAMLISMHPDSPKPIEPLIGEAV 286 (320)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 69987205346799999999999998636787899999999868
No 275
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=50.50 E-value=20 Score=16.66 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=74.2
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEE--CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 17973999888843779999999862-698189976--589988687277457753140785035788636886212045
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILY-CQTQVVGGI--HPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y-~gt~ivagV--~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
++.-||-+.|. |..|++.++...+- .+-.+++-. +|.+--....+ ...-|...+..+..+ .+|+-|=+.++..
T Consensus 4 ~~kmrVgliG~-GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~--~~DlVVE~A~~~a 79 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG-LRRPPPVVPLDQLAT--HADIVVEAAPASV 79 (271)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH-CCCCCCCCCHHHHHH--CCCEEEECCCHHH
T ss_conf 66677999886-7899999999975899818999992887888999873-589874078899601--8999998989899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 678899998539958998058846888999999840177189406
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300)
+.+-...++++|...+ +.+-|- ..|..++.+.|+++|-++.=|
T Consensus 80 v~~~~~~~L~~G~dlv-v~SvGA-Lad~~~l~~~A~~~g~~i~ip 122 (271)
T PRK13302 80 LRAIVEPVLAAGKKAI-VLSVGA-LLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred HHHHHHHHHHCCCCEE-EECHHH-HCCCHHHHHHHHHCCCEEEEE
T ss_conf 9999999997599789-975579-569299999999669859980
No 276
>PRK07568 aspartate aminotransferase; Provisional
Probab=50.42 E-value=20 Score=16.65 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----H---HHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCC
Q ss_conf 75314078503578863688621204----5---6788999985399589980588------468889999998401771
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----G---AGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~---v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~ 122 (300)
-|.|.+-....+. ..+-++.||-. + -.+.+.+++....|.+++.+-+ ++..+..+|.++|+++++
T Consensus 119 ~P~y~~y~~~~~~--~g~~~v~v~~~~e~g~~lp~~~~l~~~~~~~tk~ii~~~P~NPTG~v~s~~~~~~l~~la~~~~~ 196 (396)
T PRK07568 119 EPFYANYNGFATS--AGVKIVPVTTKIEEGFHLPKKEEIEKLITDKTKAILISNPGNPTGVVYTKEELRQLADIAKEHDL 196 (396)
T ss_pred CCCCCCHHHHHHH--CCCEEEECCCCHHHCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCE
T ss_conf 8975325999998--49878516767211887896999997477657499858992988754015789999999987106
Q ss_pred EEEECCCCEEE
Q ss_conf 89406851013
Q gi|254781050|r 123 RLIGPNCPGIL 133 (300)
Q Consensus 123 riiGPNc~Gii 133 (300)
.||==++-+-+
T Consensus 197 ~ii~De~Y~~l 207 (396)
T PRK07568 197 FLISDEVYREF 207 (396)
T ss_pred EEECCCCHHHH
T ss_conf 67424535552
No 277
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=50.18 E-value=20 Score=16.63 Aligned_cols=101 Identities=24% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCEEEEECCCCH-----HHHHHHHHHHHHCCCC--EEEEECCCCC---CE-EECCCCCCCCCCC-CHHHHCCCCCCCEEE
Q ss_conf 973999888843-----7799999998626981--8997658998---86-8727745775314-078503578863688
Q gi|254781050|r 8 NTKVLVQGLTGK-----AGTFHTEQAILYCQTQ--VVGGIHPKKG---ST-YWTGGNVNVPVFT-TVAEAKERTAANASV 75 (300)
Q Consensus 8 ~t~vivqGitg~-----~g~~~~~~~~~y~gt~--ivagV~Pgkg---g~-~~~g~~~~iPvy~-sv~ea~~~~~~D~av 75 (300)
.|-|+.-|++|. -|.+-.....+..+-+ +||.=+- |- -| ...|...++|||. --.+.. +|
T Consensus 102 P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~y-RPAA~~QL~~Lg~Q~gVpvf~h~~~~~~----p~--- 173 (439)
T TIGR00959 102 PTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLY-RPAAIEQLKVLGEQVGVPVFAHLGKGQS----PD--- 173 (439)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCC----CC---
T ss_conf 838997313788578899999999999863897034032103-4789999999767528871100478889----88---
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHHH
Q ss_conf 62120456788999985399589980588---46888999999840
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEG---IPVLDMVRVKARLE 118 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteG---ip~~d~~~l~~~A~ 118 (300)
-|-.-|..|+.+|-+.+.-.++|=|+| |-+..|.||.++-+
T Consensus 174 --~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~ 217 (439)
T TIGR00959 174 --DPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKE 217 (439)
T ss_pred --CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf --77899999999999748978997267512555999999999988
No 278
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=49.71 E-value=20 Score=16.58 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCE-EEEEECCC--CCCCCCCHHHHH
Q ss_conf 7867999805414789999999719951-67640556--744678999999
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQ-STAVGIGG--DPVKGTEFIDVL 197 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~-S~~VsiG~--D~~~G~~~~d~L 197 (300)
.|.--.|+=+|+.++.++..+.+.|-=. ...-+-|. |+ .|.|...++
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~GAkvv~~sds~g~i~~~-~Gld~~~l~ 255 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDE-DGLDVEALL 255 (411)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCEECC-CCCCHHHHH
T ss_conf 88789997762899999999997499799997678844167-777889998
No 279
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=49.70 E-value=20 Score=16.58 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4577531407850357886368862120456788999985399589980588468889999998401
Q gi|254781050|r 53 NVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEK 119 (300)
Q Consensus 53 ~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~ 119 (300)
..++|||....-..+...+..++-.-++....+.+.++.+.|.+.+=+=...=+.+|..++.++-+.
T Consensus 59 ~~~~Pv~~LlGg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Kikvg~~~~~d~~~v~~ir~~ 125 (265)
T cd03315 59 RLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA 125 (265)
T ss_pred HCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8198899972999997699997799999999999999997599989997689859999999999987
No 280
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=49.49 E-value=17 Score=17.09 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=113.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 73999888843779999999862698189976589988687277457753140785035788636886212045678899
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
-|+-|-|- |..|...-+....-=--.+|+ |--+++-++..- ..+.|||+-+++.+...++|+.+++.|.+.+..-..
T Consensus 4 iRaaIVGY-GNlG~~V~~ai~~~PDmElvg-v~~Rrd~~t~~v-a~~~~vy~V~~~~K~~~dvdv~iLC~gsatd~pe~~ 80 (326)
T TIGR01921 4 IRAAIVGY-GNLGKSVEEAIQQAPDMELVG-VFRRRDAETLDV-AEELAVYAVVEDEKELEDVDVLILCTGSATDLPEQK 80 (326)
T ss_pred EEEEEECC-CCHHHHHHHHHHCCCCCEEEE-EEEECCCCCCCH-HHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 57888622-320079999984089804899-887078875761-122520222222320288259997388645554345
Q ss_pred HHHHCCCCEEEEEC--CCCCHHHHHHHHHHHHCC-CCEEEECCC-CEEECCCCHHC-CEECCC----CCCCCCEEEEEEC
Q ss_conf 99853995899805--884688899999984017-718940685-10135551000-200112----3577867999805
Q gi|254781050|r 89 ESIEAEIPLIVCIT--EGIPVLDMVRVKARLEKS-SSRLIGPNC-PGILTPDSCKI-GIMPGS----IFRKGSVGILSRS 159 (300)
Q Consensus 89 Ea~~agik~iviit--eGip~~d~~~l~~~A~~~-g~riiGPNc-~Gii~p~~~~l-gi~p~~----~~~pG~VgivSqS 159 (300)
|-...++..+=-+= .+||.+. +-|-+.||++ .+-||--.= ||+.+-.+..+ .++|.. +|-|| +||-
T Consensus 81 p~fA~~~nTvDsfD~H~~Ip~~r-~~~DaaA~~~g~VSvis~GWDPG~fSi~Rv~geA~lp~g~tyTfwGpG----lS~G 155 (326)
T TIGR01921 81 PYFAAFINTVDSFDIHTDIPDLR-RTLDAAAKEAGAVSVISAGWDPGLFSINRVLGEAILPKGITYTFWGPG----LSQG 155 (326)
T ss_pred CCCEEEEECCCCCCCCCCHHHHH-HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC----CCCC
T ss_conf 10012210123650224207899-999999986198789983478872679999999750168613323788----6643
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC---C------CEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 4147899999997199516764055674467899999999973998---7------288999705872489999999986
Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEA---T------ESIVMVGEIGGSAEEEAAQFLKDE 230 (300)
Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~---T------~~Ivl~gEiGG~~E~~aa~fi~~~ 230 (300)
= .+.+.+- -|...+|+.- + -..|.|+...+=++ | |-+-+..+ .|..-++...-|++-
T Consensus 156 H------sdAvrrI-dGVk~Av~yT---l---P~~DA~E~~R~GE~~~LTg~~~H~R~~~vvl~-eG~~~e~ve~eI~t~ 221 (326)
T TIGR01921 156 H------SDAVRRI-DGVKAAVQYT---L---PIKDALEKVRRGEAEELTGKEIHRRECYVVLK-EGAEFEKVEAEIKTM 221 (326)
T ss_pred H------HHHHHHH-HHHHHHHHCC---C---CHHHHHHHHHCCCCCCCCCCCEEEEEEEEECC-CCCCHHHHHHHHCCC
T ss_conf 5------8988765-6678886417---8---85788898626888888756500158999736-887836899983478
Q ss_pred -HHCCCCCCEEEEEEEECCCCCCC-CCEEEEECCC
Q ss_conf -42267552689984301576553-2200112248
Q gi|254781050|r 231 -AKRGRKKPIVGFVAGKTAPPGRT-MGHAGAVISG 263 (300)
Q Consensus 231 -~~~~~~KPVva~~~GrtAp~g~~-~gHaGAi~~~ 263 (300)
-=.....--|-|+.-.++-.... |=|=|-++..
T Consensus 222 ~~YFv~yet~V~fi~e~~f~~~~tGMPHGg~vir~ 256 (326)
T TIGR01921 222 ADYFVEYETEVNFIDEVDFDLDHTGMPHGGFVIRK 256 (326)
T ss_pred CCCCCCCCEEEEECCCHHHHHCCCCCCCCCEEEEC
T ss_conf 77657750179850731212007898857538710
No 281
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=49.26 E-value=21 Score=16.54 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 678899998539958998058846888999999840177
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300)
-.+++.+|.++||..+++++.. ..+-.+.+++++++.
T Consensus 21 ~~~vi~~a~~~gv~~i~~~g~~--~~~~~~~~~l~~~~~ 57 (258)
T PRK11449 21 EEASLQRAAQAGVGKIIVPATE--AANFARVLALAERYQ 57 (258)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC
T ss_conf 9999999998299999993499--999999999987596
No 282
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=49.04 E-value=21 Score=16.51 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 78999999971995
Q gi|254781050|r 163 TYEAVFQTSQEGLG 176 (300)
Q Consensus 163 ~~e~~~~~~~~g~G 176 (300)
.|++-..+.+.|++
T Consensus 243 iY~vPl~l~~qgl~ 256 (533)
T COG0504 243 IYEVPLLLEKQGLD 256 (533)
T ss_pred HHHHHHHHHHCCHH
T ss_conf 87718999875327
No 283
>PRK07543 consensus
Probab=48.86 E-value=21 Score=16.50 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCC-CC
Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017-71
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKS-SS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~-g~ 122 (300)
-|.|.+-.+.... .....++||.. .-+|.+.+++...+|.+++.+-+= +..+..++.++++++ ++
T Consensus 122 ~P~Y~~y~~~~~~--~g~~~v~v~~~~e~~~~~d~~~le~~i~~~~k~iil~~P~NPTG~v~s~~~l~~l~~~~~~~~~v 199 (400)
T PRK07543 122 APYWVSYPEMVAL--AGGTPVFVETTAEFGFKLTPEALEAAITPKTKWFIFNSPSNPTGAAYTRAELKALTDVLVKHPHV 199 (400)
T ss_pred CCCCCCCHHHHHH--HCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7866553689998--08835995246333754384778974786671999879989888376416789999988875386
Q ss_pred EEEEC
Q ss_conf 89406
Q gi|254781050|r 123 RLIGP 127 (300)
Q Consensus 123 riiGP 127 (300)
.||==
T Consensus 200 ~iisD 204 (400)
T PRK07543 200 WVLTD 204 (400)
T ss_pred EECCH
T ss_conf 03131
No 284
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=48.76 E-value=21 Score=16.49 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 6788999985399589980588468889999998401771
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSS 122 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ 122 (300)
..+.+.+|.++||+.+++++.. ..+-.++.++++++..
T Consensus 16 ~~~vl~~a~~~gv~~ii~~~~~--~~~~~~~~~la~~~~~ 53 (255)
T pfam01026 16 RDEVIERAREAGVTAVVVVGTD--LKDFERALELARKYPG 53 (255)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCCC
T ss_conf 9999999998799989995699--9999999999976876
No 285
>pfam02745 MCR_alpha_N Methyl-coenzyme M reductase alpha subunit, N-terminal domain. Methyl-coenzyme M reductase (MCR) is the enzyme responsible for microbial formation of methane. It is a hexamer composed of 2 alpha (this family), 2 beta (pfam02241), and 2 gamma (pfam02240) subunits with two identical nickel porphinoid active sites. The N-terminal domain has a ferredoxin-like fold.
Probab=48.63 E-value=21 Score=16.49 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 567889999853995899805
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviit 102 (300)
|+..++++-.--.||.-||+-
T Consensus 87 fvNNaAmQQ~wDDirRTvivg 107 (267)
T pfam02745 87 FVNNAAMQQMWDDIRRTVIVG 107 (267)
T ss_pred EECHHHHHHHHHHHHHEEEEE
T ss_conf 344299999998766416860
No 286
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=48.47 E-value=21 Score=16.46 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCC---CCEEEEECCCC-CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 797399988884377999999986269---81899765899-88687277457753140785035788636886212045
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQ---TQVVGGIHPKK-GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~g---t~ivagV~Pgk-gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
++.|+.+.|. |+-|+--.+-.++-+. .++.. .++.. .--....+..++-++++..++.+. +|+-+++|+|..
T Consensus 3 ~~~kI~fIG~-GnMg~Aii~gll~~~~~~~~~i~v-~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~--~d~IilavKP~~ 78 (245)
T PRK07634 3 TKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIV-SNRSNVEKLDQLQARYNVSTTTDWKQHVTS--VDTIVLAMPPSA 78 (245)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-ECCCCHHHHHHHHHHCCCEECCCHHHHHHH--CCEEEEEECCHH
T ss_conf 9991999875-899999999999779999605999-699999999999997197422777999855--999999989174
Q ss_pred HHHHHHHHHH-CCCCEEEEECCCCCHHHHHH
Q ss_conf 6788999985-39958998058846888999
Q gi|254781050|r 83 AGDAIIESIE-AEIPLIVCITEGIPVLDMVR 112 (300)
Q Consensus 83 v~dai~Ea~~-agik~iviiteGip~~d~~~ 112 (300)
..++..|.-. ..=+.+|-+..|++..+..+
T Consensus 79 ~~~vl~~i~~~~~~~~iISi~AGi~i~~l~~ 109 (245)
T PRK07634 79 HEELLAELSPLLSNQLVVTVAAGIGPSYLEE 109 (245)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 9999999877606988999817998999998
No 287
>KOG0202 consensus
Probab=48.20 E-value=22 Score=16.43 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=5.5
Q ss_pred HHHCCCCCCEEEEE
Q ss_conf 99739987288999
Q gi|254781050|r 199 LFLADEATESIVMV 212 (300)
Q Consensus 199 ~~~~Dp~T~~Ivl~ 212 (300)
.|.+|++++.-+|-
T Consensus 623 i~~~~ed~~~~~~T 636 (972)
T KOG0202 623 IFSEDEDVSSMALT 636 (972)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 87677421123223
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=48.12 E-value=22 Score=16.42 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.1
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254781050|r 285 SPARIGRSLV 294 (300)
Q Consensus 285 s~~el~~~l~ 294 (300)
.++|+.+.++
T Consensus 319 ~le~~~~Af~ 328 (343)
T PRK09880 319 PFTDLEEALI 328 (343)
T ss_pred EHHHHHHHHH
T ss_conf 7999999999
No 289
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=48.05 E-value=22 Score=16.42 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred CHHHHHHHHHCCCCCCE-EEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----CCCCEE-EEECCCCC
Q ss_conf 99999999973998728-8999705872489999999986422675526899843015765----532200-11224888
Q gi|254781050|r 192 EFIDVLELFLADEATES-IVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPG----RTMGHA-GAVISGGK 265 (300)
Q Consensus 192 ~~~d~L~~~~~Dp~T~~-Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g----~~~gHa-GAi~~~~~ 265 (300)
.+..+....+.=-.+++ ++|+||-|--- |-.|+.+-+ ..-...||-|+.-++.- |+. -=|||= ||..+.-.
T Consensus 150 ~m~kic~tIekvA~sd~TvllLGESGTGK-EV~ArA~H~-~S~R~~~~FVAINCAAI-PEnLLEsELFGyEKGAFTGA~k 226 (451)
T TIGR02915 150 GMQKICRTIEKVAPSDITVLLLGESGTGK-EVLARALHE-LSDRKDKRFVAINCAAI-PENLLESELFGYEKGAFTGAVK 226 (451)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCHH-HHHHHHHHH-HCCCCCCCEEEEECCCC-CCHHHHHHHHCCCCHHHHHHHC
T ss_conf 06789888652120000130104667117-899989842-05789777344416745-7524667760341012422003
Q ss_pred CCHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 89999999999889757889899999999998
Q gi|254781050|r 266 GGAEDKINAMKEAGICIAPSPARIGRSLVELL 297 (300)
Q Consensus 266 g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l 297 (300)
+.-.|++ +.+-|=..-|-+.|||-.|...|
T Consensus 227 -~T~GKIE-~A~~GTLFLDEIGDLP~~LQAKL 256 (451)
T TIGR02915 227 -QTLGKIE-YAHGGTLFLDEIGDLPLNLQAKL 256 (451)
T ss_pred -CCCCCEE-EECCCCCCCCCHHCCCHHHHHHH
T ss_conf -4776167-50688301111220676689999
No 290
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=48.04 E-value=22 Score=16.42 Aligned_cols=201 Identities=15% Similarity=0.128 Sum_probs=104.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 73999888843779999999862698189976589988687277457753140785035788636886212045678899
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300)
||+++.+...-+-.+.-+...++ +-.+. ..|. ..-.+++..+. +.|.-+++.-.+.-.+.+.
T Consensus 2 ~Ki~~~~~~~~e~~~~~~~~~~~-~~e~~--~~~~------------~~~~~~~~~~~---~~d~v~~~~~~~i~~evl~ 63 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKN-NVEVT--TSKE------------LLSSATVDQLK---DYDGVTTMQFGKLENDVYP 63 (330)
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CEEEE--EECC------------CCCHHHHHHHC---CCCEEEEEECCCCCHHHHH
T ss_conf 66999837686699999988774-90699--9569------------89989999847---9998999607978999999
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCC--HHCCE------------------------
Q ss_conf 9985399589980588468889999998401771894068510135551--00020------------------------
Q gi|254781050|r 89 ESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDS--CKIGI------------------------ 142 (300)
Q Consensus 89 Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~--~~lgi------------------------ 142 (300)
.+-+.|+|.+.-.+-|+---| ++.|+++|+++. |+||.-.-.. .-++.
T Consensus 64 ~l~~~~LK~I~~~gvG~D~ID----l~aa~~~GI~V~--n~P~~~~~aVAE~ai~liL~l~R~~~~~~~~~~~~~~~~~~ 137 (330)
T PRK12480 64 KLESYGIKQIAQRTAGFDMYD----LDLAKKHNIVIS--NVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQA 137 (330)
T ss_pred HHHHCCCEEEEECCEECCHHC----HHHHHHCCCEEE--ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC
T ss_conf 655679759998772175216----999997899999--59986828999999999999984549999999827876456
Q ss_pred -ECCCCCCCCC-EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----HHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf -0112357786-7999805414789999999719951676405567446789-----99999999739987288999705
Q gi|254781050|r 143 -MPGSIFRKGS-VGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTE-----FIDVLELFLADEATESIVMVGEI 215 (300)
Q Consensus 143 -~p~~~~~pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~-----~~d~L~~~~~Dp~T~~Ivl~gEi 215 (300)
..+.-. .|. +|+|. -|..+..++..+. ++|.... +.|+++..+ +.+-|+-+. .+.+.|.+..-
T Consensus 138 ~~~g~~l-~gktvGIiG-~G~IG~~va~~~~--~fg~~Vi---~yD~~~~~~~~~~~~~~sleell--~~sDiIslh~P- 207 (330)
T PRK12480 138 EIMSKPV-KNMTVAIIG-TGRIGAATAKIYA--GFGATIT---AYDAYPNKDLDFLTYKDSVKEAI--KDADIISLHVP- 207 (330)
T ss_pred CCCCCCC-CCCEEEEEC-CCHHHHHHHHHHH--HCCCEEE---EECCCCCCCCCCCEECCCHHHHH--HHCCEEEECCC-
T ss_conf 5577523-586899967-5889999999987--5699899---98998642212132327899998--75999997376-
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 8724899999999864226755268998430
Q gi|254781050|r 216 GGSAEEEAAQFLKDEAKRGRKKPIVGFVAGK 246 (300)
Q Consensus 216 GG~~E~~aa~fi~~~~~~~~~KPVva~~~Gr 246 (300)
.+.| -..+|....-..+++-.+..-.+|
T Consensus 208 -lt~~--T~~lIn~~~l~~MK~~ailINtaR 235 (330)
T PRK12480 208 -ANKE--SYHLFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred -CCHH--HHCCHHHHHHHHCCCCCEEEECCC
T ss_conf -8533--120048999975799976997278
No 291
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=47.99 E-value=22 Score=16.41 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 2045678899998539958998058846888999999840177
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300)
|-+.|++++.+|.++||+.. +||.--++ --.++|++-|
T Consensus 548 pr~~v~~aI~~l~~AGI~v~-MiTGD~~~----TA~aIa~~~G 585 (917)
T COG0474 548 PREDVKEAIEELREAGIKVW-MITGDHVE----TAIAIAKECG 585 (917)
T ss_pred CCCCHHHHHHHHHHCCCCEE-EECCCCHH----HHHHHHHHHC
T ss_conf 97118999999998899479-98799989----9999999819
No 292
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=47.93 E-value=22 Score=16.41 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=3.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999998401771
Q gi|254781050|r 111 VRVKARLEKSSS 122 (300)
Q Consensus 111 ~~l~~~A~~~g~ 122 (300)
.+|+++|+++|+
T Consensus 354 ~~lv~Ya~~KgV 365 (643)
T pfam10566 354 QELIAYGKSKGV 365 (643)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986796
No 293
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=47.67 E-value=22 Score=16.38 Aligned_cols=11 Identities=0% Similarity=-0.106 Sum_probs=4.9
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+-.+++
T Consensus 121 ~cD~ria~~~a 131 (263)
T PRK06688 121 ACDLVYASDSA 131 (263)
T ss_pred HCCCHHCCCCC
T ss_conf 23401004566
No 294
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=47.28 E-value=22 Score=16.34 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=50.6
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCC
Q ss_conf 621204567889999853995899805884688---89999998401771894068510135551000200112357786
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGS 152 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~ 152 (300)
+.++-..+.+++.|-.+..|-.++-.|+.|+.+ |..++-++|+++++--+=-|--|+-+...++. + ....+.|+
T Consensus 137 l~Td~~~ie~~i~~~g~~~ilcVlsTTScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~-i--~~a~r~GR 213 (389)
T pfam05889 137 LITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRL-I--AAAHECGR 213 (389)
T ss_pred EECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH-H--HHHHHCCC
T ss_conf 43589999999998387766899844665699996679999999997499747843036617999999-9--99986388
Q ss_pred EEEEEEC
Q ss_conf 7999805
Q gi|254781050|r 153 VGILSRS 159 (300)
Q Consensus 153 VgivSqS 159 (300)
|-.+-||
T Consensus 214 VDa~VQS 220 (389)
T pfam05889 214 VDAVVQS 220 (389)
T ss_pred CEEEEEE
T ss_conf 2189970
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=47.25 E-value=22 Score=16.34 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCCCCCCCCCHHHHCCCCC-CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC---CHHHHH---HHHHHHH------
Q ss_conf 7457753140785035788-63688621204567889999853995899805884---688899---9999840------
Q gi|254781050|r 52 GNVNVPVFTTVAEAKERTA-ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGI---PVLDMV---RVKARLE------ 118 (300)
Q Consensus 52 ~~~~iPvy~sv~ea~~~~~-~D~avI~VP~~~v~dai~Ea~~agik~iviiteGi---p~~d~~---~l~~~A~------ 118 (300)
+-+++||-. ..++ .| ||.-+.|||..|.+.|+-.+.|=|+|= -...|- ++++..+
T Consensus 134 ~R~gv~vi~------~~~gn~D------PAaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~ 201 (284)
T TIGR00064 134 KRLGVDVIK------QKEGNAD------PAAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVD 201 (284)
T ss_pred HHHCCEEEE------CCCCCCC------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 883875540------7889887------1789999899998749978997347545466203999999999873210257
Q ss_pred -CCCCEEEECCCCE
Q ss_conf -1771894068510
Q gi|254781050|r 119 -KSSSRLIGPNCPG 131 (300)
Q Consensus 119 -~~g~riiGPNc~G 131 (300)
.+-+.++.=.+.|
T Consensus 202 aP~e~lLVlDAt~G 215 (284)
T TIGR00064 202 APDEVLLVLDATTG 215 (284)
T ss_pred CCCEEEEEEHHHHH
T ss_conf 87557542202220
No 296
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=47.20 E-value=22 Score=16.33 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=53.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC---
Q ss_conf 399988884377999999986269818997658998--------868727745775314078503578863688621---
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG--------STYWTGGNVNVPVFTTVAEAKERTAANASVIYV--- 78 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg--------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V--- 78 (300)
||+|-|-||--|+.-.++.++. |-+|.+-+.+... -+.+.++ +--.+++.++.+ ++|.-+-..
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~gD---l~d~~~~~~~~~--~~d~ViH~Aa~~ 75 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLER-GEEVRVLVRPTSDRRNLEGLDVEIVEGD---LRDPASLRKALA--GCRALFHVAADY 75 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHCCCCCEEEEEE---CCCHHHHHHHHH--CCCEEEEECCCC
T ss_conf 4999867779999999999978-4989999899986556521797799820---799999999971--785897613423
Q ss_pred ------CHH-------HHHHHHHHHHHCCCCEEEEEC
Q ss_conf ------204-------567889999853995899805
Q gi|254781050|r 79 ------PPS-------GAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 79 ------P~~-------~v~dai~Ea~~agik~iviit 102 (300)
|.. .....+..|.++|++.+|.++
T Consensus 76 ~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~S 112 (328)
T TIGR03466 76 RLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTS 112 (328)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 4467998999999999999999999972987431563
No 297
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=47.18 E-value=20 Score=16.67 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=83.8
Q ss_pred EEEEECCCCHHHHH----HHHH-HHHH-CCCCEEEEEC-C--------------CCCCEEECCCCCCCCCCCCHHHHCCC
Q ss_conf 39998888437799----9999-9862-6981899765-8--------------99886872774577531407850357
Q gi|254781050|r 10 KVLVQGLTGKAGTF----HTEQ-AILY-CQTQVVGGIH-P--------------KKGSTYWTGGNVNVPVFTTVAEAKER 68 (300)
Q Consensus 10 ~vivqGitg~~g~~----~~~~-~~~y-~gt~ivagV~-P--------------gkgg~~~~g~~~~iPvy~sv~ea~~~ 68 (300)
|+-|-|=||.||.= ++.. .|.- ....|+=|=- + ++.|..- ..+|-=+++- ||-++
T Consensus 2 kIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~---~i~~~G~~N~-~AA~~ 77 (233)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVDR---DIKVEGAENE-EAAKR 77 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC---CCEEECCCCH-HHHHH
T ss_conf 6788448884025699999870778787775557704884569999999999997089513---6257548877-88723
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCC
Q ss_conf 88636886212045678899998539958-99805884688899999984017718940685101355510002001123
Q gi|254781050|r 69 TAANASVIYVPPSGAGDAIIESIEAEIPL-IVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSI 147 (300)
Q Consensus 69 ~~~D~avI~VP~~~v~dai~Ea~~agik~-iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~ 147 (300)
.|+.|+.||.+++.+. ++.+...++. =++|+-.+|..- -.-+++++.+=|.
T Consensus 78 --aDVVil~vP~~~~~~~-l~~~~~~L~~dK~Vis~~VPl~~------~Ig~~~~~y~~P~------------------- 129 (233)
T TIGR01915 78 --ADVVILAVPFDHVLKT-LESIKDELEADKIVISPVVPLAS------AIGGKGLRYLPPE------------------- 129 (233)
T ss_pred --CCEEEEEECCHHHHHH-HHHHHHHHCCCCEEEECCCCCCH------HHCCCCCCCCCCC-------------------
T ss_conf --8978998422224789-99999985189289964787500------0024430026873-------------------
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH-HHCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 5778679998054147899999997199516764055674467899999999-973998728899970587248999999
Q gi|254781050|r 148 FRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLEL-FLADEATESIVMVGEIGGSAEEEAAQF 226 (300)
Q Consensus 148 ~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~-~~~Dp~T~~Ivl~gEiGG~~E~~aa~f 226 (300)
.|+++ -.+...+...| |.+++-=+. .. ++.|+= +.+.=++++.|+ |+. +++.+.
T Consensus 130 --eGSaA---------~~~a~~lpeqg---~~VvaAFhN----~~-A~~L~D~~~~~~D~D~LV~-----g~d-e~A~~~ 184 (233)
T TIGR01915 130 --EGSAA---------ELVAKLLPEQG---SKVVAAFHN----IS-AAKLKDVVDEEVDCDVLVC-----GDD-EEAKKV 184 (233)
T ss_pred --CCHHH---------HHHHHHCCCCC---CEEHHHHCC----CC-HHHCCCCCCCCCCCCEEEE-----CCC-HHHHHH
T ss_conf --10289---------99998533267---501021213----24-4540440037433453662-----687-778999
Q ss_pred HHH
Q ss_conf 998
Q gi|254781050|r 227 LKD 229 (300)
Q Consensus 227 i~~ 229 (300)
..+
T Consensus 185 V~e 187 (233)
T TIGR01915 185 VAE 187 (233)
T ss_pred HHH
T ss_conf 999
No 298
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=47.15 E-value=22 Score=16.33 Aligned_cols=87 Identities=13% Similarity=0.217 Sum_probs=56.1
Q ss_pred CCEEEEEECCCHH----HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 8679998054147----899999997199516764055674467899999999973998728899970587248999999
Q gi|254781050|r 151 GSVGILSRSGTLT----YEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQF 226 (300)
Q Consensus 151 G~VgivSqSG~l~----~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~f 226 (300)
=-|++|...+..+ .++...+.++|+=++....+..+... .++.+.++-+...+.+++|++|++ +.++..+
T Consensus 173 ~~V~~v~sdd~yG~~~~~~~~~~~~~~gICia~~~~i~~~~~~-~~~~~iv~~l~~~~~a~VIVl~~~-----~~~~~~l 246 (452)
T cd06362 173 TYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSATE-EEFDNIIRKLLSKPNARVVVLFCR-----EDDIRGL 246 (452)
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH-HHHHHHHHHHHHCCCCEEEEEEEC-----CHHHHHH
T ss_conf 3999988646778999999999998889229998876788988-999999999864699879999953-----2799999
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 998642267552689984
Q gi|254781050|r 227 LKDEAKRGRKKPIVGFVA 244 (300)
Q Consensus 227 i~~~~~~~~~KPVva~~~ 244 (300)
++++.+....+- ..|++
T Consensus 247 l~~~~~~~~~g~-~~WI~ 263 (452)
T cd06362 247 LAAAKRLNAEGH-FQWIA 263 (452)
T ss_pred HHHHHHHCCCCC-EEEEE
T ss_conf 999998556674-89997
No 299
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=47.01 E-value=22 Score=16.31 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=11.8
Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 4017718940685101355510002001
Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
+-...+|+-.||.. +-.| ..++|+.|
T Consensus 115 a~~cD~~ia~~~a~-f~~p-e~~lGl~p 140 (255)
T PRK07827 115 VGACDIAVAGPGST-FALT-EARIGVAP 140 (255)
T ss_pred HHCCCEEECCCCCE-EECC-CCCCCCCC
T ss_conf 55165541489985-5050-01562588
No 300
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=46.99 E-value=22 Score=16.31 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCH-HHHHHHHHHHHHC-CCCEEEEECCC-------CCHHHHHHHHHHHHCCCCEEE
Q ss_conf 77531407850357886368862120-4567889999853-99589980588-------468889999998401771894
Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPP-SGAGDAIIESIEA-EIPLIVCITEG-------IPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~-~~v~dai~Ea~~a-gik~iviiteG-------ip~~d~~~l~~~A~~~g~rii 125 (300)
+-|-|.....+.+..++.+.-|-+-. -.-+|+.++.... .+|.+.++..+ .+...-++|+++|+++++.||
T Consensus 185 E~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 185 EDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99982899999998699478606788898979999998506972899788963889874599999999999997598799
Q ss_pred ECCCCEEECCCCHH----CCE----------ECCCCCCCC-CEEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 06851013555100----020----------011235778-679998054147899999997199516
Q gi|254781050|r 126 GPNCPGILTPDSCK----IGI----------MPGSIFRKG-SVGILSRSGTLTYEAVFQTSQEGLGQS 178 (300)
Q Consensus 126 GPNc~Gii~p~~~~----lgi----------~p~~~~~pG-~VgivSqSG~l~~e~~~~~~~~g~G~S 178 (300)
==+.-|-+..+... .+. ..++..-|| ++|.+--+-.+.-.+........++-|
T Consensus 265 EDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s 332 (459)
T COG1167 265 EDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPS 332 (459)
T ss_pred EECCCHHHCCCCCCCCCHHHHCCCCCEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 86774332158899834576289997899913266514675549997299999999999876256998
No 301
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=46.93 E-value=23 Score=16.31 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=71.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 7399988884377999999986269---8189976589988687277457753140785035788636886212045678
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQ---TQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~g---t~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300)
.|+-+.|. |+-|+--..-.++- | .+.+.-.+|...-....-+..++.+.++..+++++ .|+-++.|.|....+
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~-g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~--advv~LavKPq~~~~ 77 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKS-GALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE--ADVVFLAVKPQDLEE 77 (266)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHH--CCEEEEEECHHHHHH
T ss_conf 65899846-88999999999966-899802389837999999999998498556867988740--898999848276899
Q ss_pred HHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 8999985-399589980588468889999998401771894068510135
Q gi|254781050|r 86 AIIESIE-AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 86 ai~Ea~~-agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
.+.+.-. ..=+.+|-|..|++..+..+... ...+-=+=||++-.+.
T Consensus 78 vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~---~~~vvR~MPNt~a~vg 124 (266)
T COG0345 78 VLSKLKPLTKDKLVISIAAGVSIETLERLLG---GLRVVRVMPNTPALVG 124 (266)
T ss_pred HHHHHHCCCCCCEEEEEECCCCHHHHHHHCC---CCCEEEECCCHHHHHC
T ss_conf 9997323568887999707997999998748---9966996788588971
No 302
>PRK06225 aspartate aminotransferase; Provisional
Probab=46.89 E-value=23 Score=16.30 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH-------HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC
Q ss_conf 7531407850357886368862120-------4567889999853995899805884------68889999998401771
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP-------SGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~-------~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300)
-|.|..-..+.+. ....++.||- ..-+|++.++++...|.+++.+-+= +..+..++.++|+++++
T Consensus 109 ~P~y~~y~~~~~~--~g~~~~~vpl~~~~~~~~~d~d~l~~~i~~~tk~i~l~nPnNPTG~v~s~~~l~~l~~~a~~~~i 186 (375)
T PRK06225 109 DPGYKIIDNFANR--FGAEVIEVPIYSEECDYKLTPEALKENVDEETKLIVLIDPLNPLGSSYTREEIKEFAEIARDNDA 186 (375)
T ss_pred CCCCHHHHHHHHH--CCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8983359999998--49905745766854688789999996288888289982998998887889999999999986277
Q ss_pred EEEECCCCEEEC
Q ss_conf 894068510135
Q gi|254781050|r 123 RLIGPNCPGILT 134 (300)
Q Consensus 123 riiGPNc~Gii~ 134 (300)
.||==.+-.-+.
T Consensus 187 ~ii~DE~Y~~f~ 198 (375)
T PRK06225 187 YLVHDCTYRDFA 198 (375)
T ss_pred CCCCHHHHHHCC
T ss_conf 000022133206
No 303
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=46.80 E-value=23 Score=16.30 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 7867999805414789999999719
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEG 174 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g 174 (300)
|.++=+||-||=-+.+=+..+.+.|
T Consensus 170 p~~~~~IsESGI~~~~di~~l~~~G 194 (217)
T cd00331 170 PKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 9898899827999999999999879
No 304
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=46.78 E-value=23 Score=16.29 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCC
Q ss_conf 788999985399589980588468889999998401771894068510135551
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDS 137 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~ 137 (300)
++.+.+++++|-+.+ +|-|+. .++.+.|+++++ |-|||+.+|.+
T Consensus 75 ~~q~~~a~~aGa~fi--VsP~~~----~ev~~~a~~~~i----p~~PG~~TptE 118 (211)
T COG0800 75 PEQARQAIAAGAQFI--VSPGLN----PEVAKAANRYGI----PYIPGVATPTE 118 (211)
T ss_pred HHHHHHHHHCCCCEE--ECCCCC----HHHHHHHHHCCC----CCCCCCCCHHH
T ss_conf 999999998599789--899999----999999986799----63688799899
No 305
>PRK07510 consensus
Probab=46.37 E-value=23 Score=16.25 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.2
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+.-+++
T Consensus 125 cD~rias~~a 134 (266)
T PRK07510 125 CDLRVAGASA 134 (266)
T ss_pred CCCHHCCCCC
T ss_conf 4601015443
No 306
>TIGR02452 TIGR02452 conserved hypothetical protein TIGR02452; InterPro: IPR012664 Members of this uncharacterised protein family are found in Streptomyces, Nostoc sp. PCC7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distribution that at least suggests lateral gene transfer..
Probab=46.29 E-value=13 Score=17.83 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=42.7
Q ss_pred CCCCCCC-H-HHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCC--CEEEEC
Q ss_conf 7753140-7-8503578863688621204567889999853995899805884688---8999999840177--189406
Q gi|254781050|r 55 NVPVFTT-V-AEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSS--SRLIGP 127 (300)
Q Consensus 55 ~iPvy~s-v-~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g--~riiGP 127 (300)
+||||.+ - -|-.++ +.-+++|.+||+.+--...+ .+ +-++.++.- .+.+++++|+.++ ..|+|-
T Consensus 151 ~VPvFr~rd~G~LL~~-Pf~~~fITspAPNar~~~r~---~p-----~~~~e~~~~l~~R~~~vl~~A~~q~~~~LVLGA 221 (275)
T TIGR02452 151 KVPVFRDRDDGDLLEE-PFLASFITSPAPNARVVARE---RP-----ISEEELPETLKNRIKKVLKLAEDQNVKALVLGA 221 (275)
T ss_pred CCCEECCCCCCCCCCC-CEEEEEECCCCCCCCHHHHC---CC-----CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9872412887630038-74888743786210077412---88-----726689999999999999999847898998534
Q ss_pred CCCEEE
Q ss_conf 851013
Q gi|254781050|r 128 NCPGIL 133 (300)
Q Consensus 128 Nc~Gii 133 (300)
=--|+.
T Consensus 222 WGCGvF 227 (275)
T TIGR02452 222 WGCGVF 227 (275)
T ss_pred EECCCC
T ss_conf 025643
No 307
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=46.16 E-value=23 Score=16.23 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEEEECCHH-----H--HHHHHHHHHHCC-CCEEEEECCCCC------HHHHHHHHHHHH
Q ss_conf 45775314078503578863688621204-----5--678899998539-958998058846------888999999840
Q gi|254781050|r 53 NVNVPVFTTVAEAKERTAANASVIYVPPS-----G--AGDAIIESIEAE-IPLIVCITEGIP------VLDMVRVKARLE 118 (300)
Q Consensus 53 ~~~iPvy~sv~ea~~~~~~D~avI~VP~~-----~--v~dai~Ea~~ag-ik~iviiteGip------~~d~~~l~~~A~ 118 (300)
...-|||..-..+++.. +=-++..|-. + =.++.++|...+ +|+.+.+.-|=| ..+.++|.++|+
T Consensus 111 vi~tPvY~PF~~~i~~n--~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~ 188 (388)
T COG1168 111 VIQTPVYPPFYNAIKLN--GRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCL 188 (388)
T ss_pred EECCCCCHHHHHHHHHC--CCEEEECCCCCCCCCEEECHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96488861899987516--9679746643469847752999999984377608999379999986436999999999999
Q ss_pred CCCCEEEE
Q ss_conf 17718940
Q gi|254781050|r 119 KSSSRLIG 126 (300)
Q Consensus 119 ~~g~riiG 126 (300)
++|++||-
T Consensus 189 kh~v~VIS 196 (388)
T COG1168 189 RHGVRVIS 196 (388)
T ss_pred HCCCEEEE
T ss_conf 83998983
No 308
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=45.93 E-value=23 Score=16.21 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=5.9
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98539958998058
Q gi|254781050|r 90 SIEAEIPLIVCITE 103 (300)
Q Consensus 90 a~~agik~iviite 103 (300)
..++|...+-|.||
T Consensus 79 Y~~~GA~aiSVLTe 92 (261)
T PRK00278 79 YEEGGAACLSVLTD 92 (261)
T ss_pred HHHCCCCEEEEEEC
T ss_conf 99779968999513
No 309
>KOG3022 consensus
Probab=45.90 E-value=23 Score=16.21 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=69.5
Q ss_pred HHCCCCEEEEECCCCC--------HHHHHHHHHHHHC---CCCEEEECCCCEEECCC-----CHHCCEECCCC---CCCC
Q ss_conf 8539958998058846--------8889999998401---77189406851013555-----10002001123---5778
Q gi|254781050|r 91 IEAEIPLIVCITEGIP--------VLDMVRVKARLEK---SSSRLIGPNCPGILTPD-----SCKIGIMPGSI---FRKG 151 (300)
Q Consensus 91 ~~agik~iviiteGip--------~~d~~~l~~~A~~---~g~riiGPNc~Gii~p~-----~~~lgi~p~~~---~~pG 151 (300)
.-.+||.++.+++|-. .....-|...-.+ -.+-|-||+-+=++... +..-|+.|-.. .+-=
T Consensus 42 ~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~m 121 (300)
T KOG3022 42 NLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLM 121 (300)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEE
T ss_conf 31345458999867887761689999999986179717997503558770534087774455048874144443876788
Q ss_pred CEEEEEEC--------CCHHHHHH-HHHHHCCCCEEEEEECCCCCCCCCC--HHHHHHHHHCCCCCCEEEEEEECCCHHH
Q ss_conf 67999805--------41478999-9999719951676405567446789--9999999973998728899970587248
Q gi|254781050|r 152 SVGILSRS--------GTLTYEAV-FQTSQEGLGQSTAVGIGGDPVKGTE--FIDVLELFLADEATESIVMVGEIGGSAE 220 (300)
Q Consensus 152 ~VgivSqS--------G~l~~e~~-~~~~~~g~G~S~~VsiG~D~~~G~~--~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E 220 (300)
++|++.++ |.+-+.+. ..+....+|.--++=+- -=+|++ +.-+.+++..+ +-+|++- -+--.+-
T Consensus 122 S~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviD--tPPGtsDehls~~~~~~~~--~gAviVT-TPQ~vAl 196 (300)
T KOG3022 122 SMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVID--TPPGTSDEHLSLVQFLRES--DGAVIVT-TPQEVAL 196 (300)
T ss_pred EEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEEE--CCCCCCHHHHHEEECCCCC--CCEEEEE-CCHHHHH
T ss_conf 756432888766265454788999999716887776779995--8999870143100004455--7349981-7205566
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 999999998642267552689984301
Q gi|254781050|r 221 EEAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 221 ~~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300)
.|+++-+.-.++ .+-||+.++--.+
T Consensus 197 ~Dv~K~i~fc~K--~~I~ilGvVENMs 221 (300)
T KOG3022 197 QDVRKEIDFCRK--AGIPILGVVENMS 221 (300)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECCC
T ss_conf 888865026664--5985688896255
No 310
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=45.81 E-value=23 Score=16.20 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=49.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 99988884377999999986269818997658998868727745775-31407850357886368862120456788999
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300)
.++.+.+-.+.....+..++- |-+++= ||-. .| .++.+++..++. .|-.+|=+---.-.+.+.+
T Consensus 14 aIlR~~~~~~a~~~~~al~~~-Gi~~iE-VTl~------------tp~a~~~I~~l~~~~-~~~~~iGAGTVlt~e~~~~ 78 (206)
T PRK09140 14 AILRGITPDEALAHVGALIEA-GFRAIE-IPLN------------SPDPFDSIAALVKAL-GDDALIGAGTVLSPEQVDR 78 (206)
T ss_pred EEEECCCHHHHHHHHHHHHHC-CCCEEE-EECC------------CCCHHHHHHHHHHHC-CCCEEEEEEECCCHHHHHH
T ss_conf 999589999999999999986-998899-9179------------976999999999967-9865998620467999999
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCC
Q ss_conf 985399589980588468889999998401771894068510135551
Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDS 137 (300)
Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~ 137 (300)
++++|.+.+ +|-++. .++.+.|+++++-.+ +|+.+|.+
T Consensus 79 ai~aGA~Fi--VSP~~~----~~vi~~a~~~~i~~i----PG~~TPsE 116 (206)
T PRK09140 79 LADAGGRLI--VTPNID----PEVIRRAVAYGMTVM----PGVATPTE 116 (206)
T ss_pred HHHCCCCEE--ECCCCC----HHHHHHHHHCCCCCC----CCCCCHHH
T ss_conf 998599999--999998----999999998299652----78599999
No 311
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=45.72 E-value=23 Score=16.19 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=4.2
Q ss_pred CCEEEEEECC
Q ss_conf 8679998054
Q gi|254781050|r 151 GSVGILSRSG 160 (300)
Q Consensus 151 G~VgivSqSG 160 (300)
-++|++--.|
T Consensus 124 ~~~Gl~~~~g 133 (243)
T PRK07854 124 AKYGLALDNW 133 (243)
T ss_pred CCEEECCCCC
T ss_conf 5414577962
No 312
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=45.59 E-value=24 Score=16.18 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCE
Q ss_conf 43779999999862698189976589988687277457753140785035788636886212045678899998539958
Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPL 97 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~ 97 (300)
|-.+.+++-..+...|-|||+.-.- ++| -|+-..-.... ...-+.||-+.. ++...++++...|+
T Consensus 86 G~AA~~~ai~~la~aGD~iVss~~L------YGG------T~~lf~~tl~~--~Gi~v~fvd~~d-~~~~~~aI~~nTka 150 (426)
T COG2873 86 GQAAITYAILNLAGAGDNIVSSSKL------YGG------TYNLFSHTLKR--LGIEVRFVDPDD-PENFEAAIDENTKA 150 (426)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCC------CCC------HHHHHHHHHHH--CCCEEEEECCCC-HHHHHHHHCCCCCE
T ss_conf 3589999999864588706751323------375------48899988886--481799927999-89999873822406
Q ss_pred EEEECCCCC---HHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 998058846---88899999984017718940685101
Q gi|254781050|r 98 IVCITEGIP---VLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 98 iviiteGip---~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
+-+=|=|=| +.|...+.++|+++|+-+|=-|+++-
T Consensus 151 vf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~at 188 (426)
T COG2873 151 VFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT 188 (426)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 87875168876635779999999875993898367773
No 313
>PRK06836 aspartate aminotransferase; Provisional
Probab=45.56 E-value=24 Score=16.17 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH---H--HHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHC-----
Q ss_conf 753140785035788636886212045---6--7889999853995899805884------68889999998401-----
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG---A--GDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEK----- 119 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~---v--~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~----- 119 (300)
-|.|.+-....+. .+.-++.||... - .+++.+++....|.+++.+-+= +..+..++.++|++
T Consensus 128 ~P~y~~y~~~~~~--~g~~~v~v~~~~e~~~~d~~~l~~~i~~~tk~iilnsP~NPTG~v~s~e~l~~i~~l~~~~~~~~ 205 (396)
T PRK06836 128 APYFVEYKFYVDN--HGGKLVVVPPDTEDFQPDLDALEAAITPKTKAVIINSPNNPTGVIYSEETLKALGALLEEKSKEY 205 (396)
T ss_pred CCCCHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7865068999998--49979993167656767999999736756629998689898998679999999999999865752
Q ss_pred -CCCEEEECCCCEE
Q ss_conf -7718940685101
Q gi|254781050|r 120 -SSSRLIGPNCPGI 132 (300)
Q Consensus 120 -~g~riiGPNc~Gi 132 (300)
+++.||==.+-.-
T Consensus 206 ~h~i~vIsDEiY~~ 219 (396)
T PRK06836 206 GRPIYLISDEPYRE 219 (396)
T ss_pred CCCEEEEECCCHHH
T ss_conf 88679980574075
No 314
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.42 E-value=24 Score=16.16 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=14.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 39998888437799999998626981899
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVG 38 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iva 38 (300)
||+|.|+ |+.|.--++..... |-+|..
T Consensus 19 kvlV~Gl-G~SG~s~a~~L~~~-G~~v~~ 45 (476)
T PRK00141 19 RVLVAGA-GVSGLGIAKMLSEL-GCDVVV 45 (476)
T ss_pred CEEEEEE-CHHHHHHHHHHHHC-CCEEEE
T ss_conf 8899922-78899999999978-997999
No 315
>pfam02811 PHP PHP domain. The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain.
Probab=45.36 E-value=24 Score=16.15 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--CEEEE
Q ss_conf 5678899998539958998058846888999999840177--18940
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS--SRLIG 126 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g--~riiG 126 (300)
.+.+.+..|.+.|.+ ++.||++-+.....+..+.|++.| ++.|=
T Consensus 17 ~i~~lv~~a~~~g~~-alaiTDh~~~~g~~~~~~~~~~~g~~ik~I~ 62 (173)
T pfam02811 17 SIEELVKAAKELGLE-AIAITDHDNLFGAPEFYEAAKLEKAGLKPII 62 (173)
T ss_pred CHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999999986998-7999667750519999999985478980788
No 316
>PRK05380 pyrG CTP synthetase; Validated
Probab=44.90 E-value=24 Score=16.11 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=13.2
Q ss_pred CCCCHHHHCCCCC-CCEEEEECCHHHHHHHHHHHHH
Q ss_conf 3140785035788-6368862120456788999985
Q gi|254781050|r 58 VFTTVAEAKERTA-ANASVIYVPPSGAGDAIIESIE 92 (300)
Q Consensus 58 vy~sv~ea~~~~~-~D~avI~VP~~~v~dai~Ea~~ 92 (300)
+|.+|-+--++++ ---.|=.+| ++.|.|.+.+.
T Consensus 94 iy~~Vi~kER~G~YLG~TVQvIP--HiTdeIk~~i~ 127 (534)
T PRK05380 94 IYSSVIEKERRGDYLGKTVQVIP--HITDEIKERIL 127 (534)
T ss_pred HHHHHHHHHHCCCCCCCCEEECC--CCHHHHHHHHH
T ss_conf 89999888745786887347788--86689999999
No 317
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=44.65 E-value=24 Score=16.08 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=19.2
Q ss_pred CCCHHHHCCCC-CCCEEEEECC---HHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 14078503578-8636886212---0456788999985399589980
Q gi|254781050|r 59 FTTVAEAKERT-AANASVIYVP---PSGAGDAIIESIEAEIPLIVCI 101 (300)
Q Consensus 59 y~sv~ea~~~~-~~D~avI~VP---~~~v~dai~Ea~~agik~ivii 101 (300)
|..+.+|.++. ..|-.+||.- +-...+.+.|.++..++.-|.+
T Consensus 49 ~~~i~~ai~~~~~~~gv~vl~DlGSa~l~ae~a~e~l~~~~~~~v~l 95 (472)
T PRK11377 49 AVKVMEAIESVADADHVLVMMDMGSALLSAETALELLDPEIAAKVRL 95 (472)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCHHHCCEEEE
T ss_conf 99999999985389977999817489989999998538765271799
No 318
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=44.40 E-value=25 Score=16.06 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=20.8
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 63688621204567889999853995899805884688899999984017718
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r 123 (300)
.|+-+..-.|.. -+.+..++|...+.+-.|-. .+..++.+..|++|++
T Consensus 60 ~DvHLMv~~P~~---~i~~~~~~g~d~I~~H~E~~--~~~~~~i~~ik~~g~~ 107 (211)
T cd00429 60 LDVHLMVENPER---YIEAFAKAGADIITFHAEAT--DHLHRTIQLIKELGMK 107 (211)
T ss_pred EEEEEEECCHHH---HHHHHHHHCCCEEEECCCCC--CCHHHHHHHHHHCCCC
T ss_conf 058998718877---69999970998899864322--0899999999973987
No 319
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=43.82 E-value=25 Score=16.00 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=55.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCC--CCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 3999888843779999999862698189976589988687277457753--14078503578863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPV--FTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPv--y~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
||+|.|--|||-..-.+....-.-.+| -+.||-+|..-.++...+.+ ++.+.+...+..+|+.+|-=..+.+...+
T Consensus 2 kVLviGsGgREHAia~kl~~s~~v~~v--~~~PGN~G~~~~~~~~~i~~~d~~~l~~~a~~~~idlviiGPE~pL~~Gi~ 79 (424)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKV--YVAPGNAGTALEAENVAIDVTDIEALVAFAKEEGIDLTVVGPEAPLVAGIV 79 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE--EEECCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 799988888999999999739798989--992897588741736512857999999999984999999896678873579
Q ss_pred HHHHHCCCCE
Q ss_conf 9998539958
Q gi|254781050|r 88 IESIEAEIPL 97 (300)
Q Consensus 88 ~Ea~~agik~ 97 (300)
-.+-++|++.
T Consensus 80 D~l~~~gi~v 89 (424)
T PRK00885 80 DAFRAAGLKI 89 (424)
T ss_pred HHHHHCCCCE
T ss_conf 9995069946
No 320
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=43.57 E-value=25 Score=15.98 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 3998728899970-587248999999998642267552689984301576553220011224888899999999998897
Q gi|254781050|r 202 ADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI 280 (300)
Q Consensus 202 ~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv 280 (300)
-.|+++-.+|+.| ++ ..-++.-+.+...+....-+-+-+++-|+.....-. .+- .+..-.+.....+.+.++
T Consensus 189 ~~p~~~g~ILflEdv~-E~~yridRmL~qL~~aG~f~~~~GivlG~ft~~~~~-~~~-----~~~~~~~v~~~~~~~~~i 261 (305)
T PRK11253 189 WMPKIEGGILFLEDIN-EHPFRVERMLLQLHHAGILARQQAIVLGSFSGARPN-DYD-----AGYDLEAVYAFLRSRLSI 261 (305)
T ss_pred CCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-CCC-----CCCCHHHHHHHHHHCCCC
T ss_conf 8778788489995088-873799999999997597666818999406678778-777-----676899999999743899
Q ss_pred EECCCH
Q ss_conf 578898
Q gi|254781050|r 281 CIAPSP 286 (300)
Q Consensus 281 ~v~~s~ 286 (300)
+++..+
T Consensus 262 PV~~~~ 267 (305)
T PRK11253 262 PVITGL 267 (305)
T ss_pred CEEECC
T ss_conf 889899
No 321
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.54 E-value=25 Score=15.98 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=47.9
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHH----CCCCCCCEEEEECCHHH--HHHHHHHHHHC--CCCEEEEECCCCCHH
Q ss_conf 99765899886872774577531407850----35788636886212045--67889999853--995899805884688
Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEA----KERTAANASVIYVPPSG--AGDAIIESIEA--EIPLIVCITEGIPVL 108 (300)
Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea----~~~~~~D~avI~VP~~~--v~dai~Ea~~a--gik~iviiteGip~~ 108 (300)
|+..+||+.. =|-|.++.+. .++.++++.+..--... -...++.++.. ++..+++...- .
T Consensus 2 ~~~~~~g~~~---------nPF~~~~~~g~~~aA~~~Gv~l~v~~~~~d~~~q~~~ie~~I~~~~~vd~Iii~p~~---~ 69 (305)
T cd06324 2 VVFLNPGKSD---------EPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK---S 69 (305)
T ss_pred EEEECCCCCC---------CHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC---C
T ss_conf 6990899888---------969999999999999972998999739999999999999998363797099987962---0
Q ss_pred HHHHHHHHHHCCCCEEEECCC
Q ss_conf 899999984017718940685
Q gi|254781050|r 109 DMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 109 d~~~l~~~A~~~g~riiGPNc 129 (300)
....+++.|++.|+.++-=|+
T Consensus 70 ~~~~~l~~A~~agIPVv~~d~ 90 (305)
T cd06324 70 VAPELLRLAEGAGVKLFLVNS 90 (305)
T ss_pred CHHHHHHHHHHCCCEEEEECC
T ss_conf 018999999976983999658
No 322
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=43.52 E-value=25 Score=15.97 Aligned_cols=220 Identities=20% Similarity=0.233 Sum_probs=107.1
Q ss_pred ECCCCCCEEECCCCCCCCCC--CCHHHHC---C-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC-CCC---HHH
Q ss_conf 65899886872774577531--4078503---5-788636886212045678899998539958998058-846---888
Q gi|254781050|r 40 IHPKKGSTYWTGGNVNVPVF--TTVAEAK---E-RTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITE-GIP---VLD 109 (300)
Q Consensus 40 V~Pgkgg~~~~g~~~~iPvy--~sv~ea~---~-~~~~D~avI~VP~~~v~dai~Ea~~agik~iviite-Gip---~~d 109 (300)
|.|.++.....|-...+--| +-|.||. + .++..+.++.+-|+.+.++.++|+..|+.-++.|+. .+. ...
T Consensus 19 v~~~~~~~~~~gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ 98 (260)
T COG2086 19 VDPDTGTLDRSGVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLA 98 (260)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHH
T ss_conf 81688840147886225812079999999861468886699999464533999999985488759997032236755899
Q ss_pred H-HHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCC-CEEEEEECCCCC
Q ss_conf 9-99999840177189406851013555100020011235778679998054147899999997199-516764055674
Q gi|254781050|r 110 M-VRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGL-GQSTAVGIGGDP 187 (300)
Q Consensus 110 ~-~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~-G~S~~VsiG~D~ 187 (300)
. .-|.+..++.+ |+ ++-- |.-+.=+.+|.++..++.++----+ ..|.+-...++.
T Consensus 99 ta~~Laa~~~~~~-----~~---LVl~---------------G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~d~~~ 155 (260)
T COG2086 99 TAKALAAAVKKIG-----PD---LVLT---------------GKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGK 155 (260)
T ss_pred HHHHHHHHHHHCC-----CC---EEEE---------------ECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCE
T ss_conf 9999999998749-----98---8998---------------13443576466589999986985053378899747987
Q ss_pred CCCCCHHHHHHHHHCCCCC-----CEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECC
Q ss_conf 4678999999999739987-----28899970587248999999998642267552689984301576553220011224
Q gi|254781050|r 188 VKGTEFIDVLELFLADEAT-----ESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVIS 262 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T-----~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~ 262 (300)
+..+. .++++-+| =+++-..+ +..+-+-..+-. ...+.+|||-.+..- ..|-..+-.++
T Consensus 156 v~v~R------~le~g~e~~e~~LPaVvtv~~--~~n~PR~psl~~--im~A~kk~v~~~~~~---d~g~~~~~~~s--- 219 (260)
T COG2086 156 VTVER------ELEGGLETVEAPLPAVVTVDL--RINEPRYPSLPG--IMAAKKKPVKKWSLA---DLGLNVGLAGS--- 219 (260)
T ss_pred EEEEE------ECCCCEEEEECCCCEEEEECC--CCCCCCCCCHHH--HHHHCCCCCEECCHH---HHCCCCCCCCC---
T ss_conf 99999------737953999715988999535--557877789799--987545784034576---70642134688---
Q ss_pred CCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
Q ss_conf 8888999999999988975788989999999999843
Q gi|254781050|r 263 GGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 263 ~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300)
..-....+...=|+.|+.+.++++|+.+.|.+.|.+
T Consensus 220 -~~~v~~~~~~~~r~~~~~v~~~~~e~a~~lv~~L~~ 255 (260)
T COG2086 220 -PLKVVKVTPPPERKAGVKVKDGPEEIAAELVEKLKE 255 (260)
T ss_pred -CCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHH
T ss_conf -504664268764567648557589999999999987
No 323
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=43.31 E-value=26 Score=15.95 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCEEEEEC--CC-CC-HHHHHHHHHHHHCCCCEEE
Q ss_conf 12045678899998539--95899805--88-46-8889999998401771894
Q gi|254781050|r 78 VPPSGAGDAIIESIEAE--IPLIVCIT--EG-IP-VLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 78 VP~~~v~dai~Ea~~ag--ik~iviit--eG-ip-~~d~~~l~~~A~~~g~rii 125 (300)
+++....+.++|+.+.. .+.++++| .+ +. .+|..++.++|+++++-++
T Consensus 138 I~~~~~~~~Iee~~~e~gk~~aL~llt~pdy~yGn~~d~~~i~~iah~~~ip~l 191 (386)
T PRK09331 138 ITPEAYAEKIEEVEDETGKPPALALLTHVDGNYGNLHDAKKIAKVAHQYGIPLL 191 (386)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 080057999999998618985599996888664454638999999987498189
No 324
>PRK09148 aminotransferase; Validated
Probab=43.09 E-value=26 Score=15.93 Aligned_cols=74 Identities=9% Similarity=-0.033 Sum_probs=40.6
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH---HHHHHHHHHH---CCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE
Q ss_conf 753140785035788636886212045---6788999985---399589980588------4688899999984017718
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG---AGDAIIESIE---AEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~---v~dai~Ea~~---agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300)
-|.|.+-.....-. ...+..||-.. -...+.+..+ ...|.+++.+-+ .+..+.+++.++|+++++.
T Consensus 124 ~P~Yp~y~~~~~~~--g~~~~~v~~~~~~~~~~~le~~~~~~~~ktk~iil~~P~NPTG~v~~~~~l~~l~~~a~~~~i~ 201 (406)
T PRK09148 124 NPSYPIHAFGFIMA--GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDLVAFAKKHDIW 201 (406)
T ss_pred CCCHHHHHHHHHHH--CCCEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 77658789999981--7915860577643333029999974587644999778999888768999999999875405489
Q ss_pred EEECCCCE
Q ss_conf 94068510
Q gi|254781050|r 124 LIGPNCPG 131 (300)
Q Consensus 124 iiGPNc~G 131 (300)
||==.+-.
T Consensus 202 visDEiY~ 209 (406)
T PRK09148 202 ILSDLAYS 209 (406)
T ss_pred EECCCCHH
T ss_conf 96342253
No 325
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=42.70 E-value=26 Score=15.89 Aligned_cols=143 Identities=19% Similarity=0.144 Sum_probs=74.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCCCCCCHHH---HCCCCCCCEEEEECCHHHH
Q ss_conf 97399988884377999999986269818-9976589988687277457753140785---0357886368862120456
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVPVFTTVAE---AKERTAANASVIYVPPSGA 83 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iPvy~sv~e---a~~~~~~D~avI~VP~~~v 83 (300)
..+|+|-| .|..|...++...+. |..+ +.|....+...... ..+++. ++..+ +.....+|+-+++||....
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a-~~lgv~--d~~~~~~~~~~~~~aDlVivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAA-LELGVI--DELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHH-HHCCCC--HHHCCCHHHHHCCCCCEEEEECCHHHH
T ss_conf 64899987-746779999999976-9847997247746778776-635853--010011555413569989995778899
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC---CEEEECCCCEEECCCCHHCCEE-CCCCCCCCCEEEEEEC
Q ss_conf 78899998539958998058846888999999840177---1894068510135551000200-1123577867999805
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS---SRLIGPNCPGILTPDSCKIGIM-PGSIFRKGSVGILSRS 159 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g---~riiGPNc~Gii~p~~~~lgi~-p~~~~~pG~VgivSqS 159 (300)
.+.+.|... ..+.=.++|+=-..+- .+++..++.. .+++|-- -..|-- -...| .+.+=+++.+
T Consensus 78 ~~~l~~l~~-~l~~g~iv~Dv~S~K~--~v~~a~~~~~~~~~~~vg~H---------PM~G~~~~~~lf-~~~~~vltp~ 144 (279)
T COG0287 78 EEVLKELAP-HLKKGAIVTDVGSVKS--SVVEAMEKYLPGDVRFVGGH---------PMFGPEADAGLF-ENAVVVLTPS 144 (279)
T ss_pred HHHHHHHCC-CCCCCCEEECCCCHHH--HHHHHHHHHCCCCCEEEECC---------CCCCCCCCCCCC-CCCEEEEECC
T ss_conf 999998630-3799988973642017--89999997466777078218---------999874311233-7967999479
Q ss_pred CCHHHHHHH
Q ss_conf 414789999
Q gi|254781050|r 160 GTLTYEAVF 168 (300)
Q Consensus 160 G~l~~e~~~ 168 (300)
..--.+...
T Consensus 145 ~~~~~~~~~ 153 (279)
T COG0287 145 EGTEKEWVE 153 (279)
T ss_pred CCCCHHHHH
T ss_conf 998789999
No 326
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=42.55 E-value=26 Score=15.88 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEE--ECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 277457753140785035788636886--2120456788999985399589980588468889999998
Q gi|254781050|r 50 TGGNVNVPVFTTVAEAKERTAANASVI--YVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKAR 116 (300)
Q Consensus 50 ~g~~~~iPvy~sv~ea~~~~~~D~avI--~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~ 116 (300)
.|+.+++|||..+....++..+-.+.- ..|++...+.+.+..+.|.+.+=+-.-.-|..|..++.+.
T Consensus 107 ~gK~~g~Pv~~LLG~~rd~i~~y~s~~~~~~~~~~~~~~~~~~~~~G~~~~K~k~g~~~~~d~~~v~av 175 (352)
T cd03328 107 KARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQGIPRVKMKIGRDPRRDPDRVAAA 175 (352)
T ss_pred HHHHCCCHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 988849819998479987447875268678998999999999997599866034799978889999999
No 327
>KOG1681 consensus
Probab=42.47 E-value=22 Score=16.33 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=7.7
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 77867999805414
Q gi|254781050|r 149 RKGSVGILSRSGTL 162 (300)
Q Consensus 149 ~pG~VgivSqSG~l 162 (300)
+.=.||+..--|||
T Consensus 162 kEVDvglaADvGTL 175 (292)
T KOG1681 162 KEVDVGLAADVGTL 175 (292)
T ss_pred EEEEEEHHHCHHHH
T ss_conf 65422011131467
No 328
>TIGR01288 nodI nodulation ABC transporter NodI; InterPro: IPR005978 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Nodulation ABC transporter, NodI is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ IPR005981 from INTERPRO to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.; GO: 0005215 transporter activity, 0005524 ATP binding, 0006810 transport, 0009877 nodulation, 0016020 membrane.
Probab=42.17 E-value=15 Score=17.44 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=42.2
Q ss_pred HHCCCCEEEECCC----------CEEECCCCHHCCEEC----CCC-CCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4017718940685----------101355510002001----123-5778679998054147899999997199516764
Q gi|254781050|r 117 LEKSSSRLIGPNC----------PGILTPDSCKIGIMP----GSI-FRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV 181 (300)
Q Consensus 117 A~~~g~riiGPNc----------~Gii~p~~~~lgi~p----~~~-~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V 181 (300)
++..-.-++|||. +|+++|+..++..+. +.. ...-.||+|+|-.+|-.|....-.-.=+|-+.-+
T Consensus 28 ~~GeCfGllGPnGaGkst~~r~~lG~~~P~~G~itvl~~~~P~~~r~ar~~~G~v~qfd~l~~eft~renllv~Gryf~~ 107 (303)
T TIGR01288 28 AAGECFGLLGPNGAGKSTIARLVLGLISPDEGKITVLGEPVPARARLARAKIGVVPQFDNLDREFTVRENLLVFGRYFGL 107 (303)
T ss_pred ECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHEEEEEEEEEC
T ss_conf 33512222278876257776676523588875278824777425543344401120201232011222110222000000
Q ss_pred ECC
Q ss_conf 055
Q gi|254781050|r 182 GIG 184 (300)
Q Consensus 182 siG 184 (300)
+.-
T Consensus 108 ~~r 110 (303)
T TIGR01288 108 STR 110 (303)
T ss_pred HHH
T ss_conf 045
No 329
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=42.13 E-value=27 Score=15.84 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=9.2
Q ss_pred HHHHHHHHCCCCCCEEEEEE
Q ss_conf 99998642267552689984
Q gi|254781050|r 225 QFLKDEAKRGRKKPIVGFVA 244 (300)
Q Consensus 225 ~fi~~~~~~~~~KPVva~~~ 244 (300)
+|++.-++.+.++-|+....
T Consensus 228 ~wL~~i~~v~~~~~I~lIlD 247 (445)
T TIGR00709 228 EWLQKIREVTRKHDIKLILD 247 (445)
T ss_pred HHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999874278479982
No 330
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.06 E-value=27 Score=15.83 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHC--CEECCCCC----CCCCEEEEEECCCHHHHHHHHH----HHCC
Q ss_conf 468889999998401771894068510135551000--20011235----7786799980541478999999----9719
Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKI--GIMPGSIF----RKGSVGILSRSGTLTYEAVFQT----SQEG 174 (300)
Q Consensus 105 ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~l--gi~p~~~~----~pG~VgivSqSG~l~~e~~~~~----~~~g 174 (300)
....|.++|+++|+++|++||= =|=.||.+.. -.+|.... .......+.-+---+|+.+..+ ...
T Consensus 79 YT~~di~eiv~YA~~rgI~VIP----EID~PGH~~a~~~~~pel~~~~~~~~~~~~~ld~~~~~t~~fl~~v~~Ev~~l- 153 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIP----EIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG- 153 (326)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE----CCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-
T ss_conf 6899999999999984998986----36783378999985956347887788887756899876999999999999986-
Q ss_pred CC-EEEEEECCCCCCCC
Q ss_conf 95-16764055674467
Q gi|254781050|r 175 LG-QSTAVGIGGDPVKG 190 (300)
Q Consensus 175 ~G-~S~~VsiG~D~~~G 190 (300)
+. .|..+.+|||=+.+
T Consensus 154 F~~~~~yiHiGGDE~~~ 170 (326)
T cd06564 154 FNPKSDTVHIGADEYAG 170 (326)
T ss_pred CCCCCCEEEECCCCCCC
T ss_conf 67878889863113888
No 331
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=41.90 E-value=27 Score=15.82 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=15.8
Q ss_pred CCEEEEECC---HHHHHHHHHH---HHHCCCCEEEEEC
Q ss_conf 636886212---0456788999---9853995899805
Q gi|254781050|r 71 ANASVIYVP---PSGAGDAIIE---SIEAEIPLIVCIT 102 (300)
Q Consensus 71 ~D~avI~VP---~~~v~dai~E---a~~agik~iviit 102 (300)
++-.=++|| +++---++|- |--+|++-+|++|
T Consensus 117 i~~VGlYVPGG~A~ypStvLM~avPAkvAGv~~Iv~~t 154 (425)
T COG0141 117 IERVGLYVPGGKAAYPSTVLMNAVPAKVAGVEEIVVVT 154 (425)
T ss_pred HHHEEEECCCCCCCCHHHHHHHHCCHHHCCCCEEEEEC
T ss_conf 25417963588767748888730538662886489977
No 332
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=41.61 E-value=27 Score=15.79 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCEEC----CCHHHHHHHHHHHHH
Q ss_conf 999999998897578----898999999999984
Q gi|254781050|r 269 EDKINAMKEAGICIA----PSPARIGRSLVELLG 298 (300)
Q Consensus 269 ~~k~~al~~aGv~v~----~s~~el~~~l~~~l~ 298 (300)
+.-...|+++|+-.+ .+++|+.+.+++.|.
T Consensus 102 ~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~ 135 (137)
T PRK02261 102 EEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLN 135 (137)
T ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 9999999977979887978899999999999863
No 333
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=41.56 E-value=27 Score=15.78 Aligned_cols=11 Identities=0% Similarity=0.009 Sum_probs=4.5
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+..+++
T Consensus 123 ~cD~ria~~~a 133 (257)
T PRK07110 123 YADFVVLSEES 133 (257)
T ss_pred CCCEEEECCCC
T ss_conf 26878986997
No 334
>KOG1350 consensus
Probab=41.41 E-value=27 Score=15.77 Aligned_cols=93 Identities=20% Similarity=0.474 Sum_probs=58.2
Q ss_pred CCCCEEEEEECC----CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCH-HHHHH---HHHCCCCCCEEEEEEEC----C
Q ss_conf 778679998054----147899999997199516764055674467899-99999---99739987288999705----8
Q gi|254781050|r 149 RKGSVGILSRSG----TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEF-IDVLE---LFLADEATESIVMVGEI----G 216 (300)
Q Consensus 149 ~pG~VgivSqSG----~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~-~d~L~---~~~~Dp~T~~Ivl~gEi----G 216 (300)
+-|.||++.--| -|..|+.+..+++-=|+|-+.|+|-.---|.|. .++.+ .-.+|...|+.++||.. |
T Consensus 190 kGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPG 269 (521)
T KOG1350 190 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPG 269 (521)
T ss_pred CCCEEEEECCCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCEEECCCCCCEEEEEEECCCCCCC
T ss_conf 48734442257766133299998788886288678631453334430789999863812125776337898621579987
Q ss_pred CHHH-----HHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 7248-----9999999986422675526899843
Q gi|254781050|r 217 GSAE-----EEAAQFLKDEAKRGRKKPIVGFVAG 245 (300)
Q Consensus 217 G~~E-----~~aa~fi~~~~~~~~~KPVva~~~G 245 (300)
-.+. ...|+|.+.. -..-|..|+.-
T Consensus 270 ARaRV~LTgLTvAEYFRD~----egQDVLLFIDN 299 (521)
T KOG1350 270 ARARVALTGLTVAEYFRDQ----EGQDVLLFIDN 299 (521)
T ss_pred CEEEEEEECCCHHHHHHCC----CCCEEEEEEHH
T ss_conf 3014543111599986344----66668986123
No 335
>PRK06186 hypothetical protein; Validated
Probab=41.34 E-value=27 Score=15.76 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCCCCHHHHCCC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHCCCCEEEECCC
Q ss_conf 531407850357----886368862120456788999985399589980588468---8899999984017718940685
Q gi|254781050|r 57 PVFTTVAEAKER----TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV---LDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 57 Pvy~sv~ea~~~----~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~---~d~~~l~~~A~~~g~riiGPNc 129 (300)
-.|.||.||..+ .+.++-+.++++....+. + .-.++..++++ -|++. ..+....++||++++-.+|= |
T Consensus 15 DaY~Sv~eAL~ha~~~~~~~v~i~wI~se~~~~~--~-~L~~~dgilv~-pGfG~RG~eGki~Ai~yARen~iP~LGI-C 89 (229)
T PRK06186 15 TAHQAIPLALDLAAEVLGLPVDYEWLPTDDIHDP--E-DLAGFDGIWCV-PGSPYRNEDGALTAIRFARENGIPFLGT-C 89 (229)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--C-HHCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCEEEE-H
T ss_conf 0898699999987997099068999720116771--0-22259989989-9877765638999999998769987864-2
Q ss_pred CEEEC
Q ss_conf 10135
Q gi|254781050|r 130 PGILT 134 (300)
Q Consensus 130 ~Gii~ 134 (300)
+|+-.
T Consensus 90 LGmQ~ 94 (229)
T PRK06186 90 GGFQH 94 (229)
T ss_pred HHHHH
T ss_conf 77899
No 336
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=41.30 E-value=11 Score=18.22 Aligned_cols=76 Identities=29% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHCCCCCCEEE--EEEECCCHH-HHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 997399872889--997058724-8999999998642267---5526899843015765532200112248888999999
Q gi|254781050|r 199 LFLADEATESIV--MVGEIGGSA-EEEAAQFLKDEAKRGR---KKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKI 272 (300)
Q Consensus 199 ~~~~Dp~T~~Iv--l~gEiGG~~-E~~aa~fi~~~~~~~~---~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~ 272 (300)
-|.||=+|+.|. =|.-. ++ -.+.|++.-+-.+-.+ -||=.+.+||+.= | .++|.+.|.-
T Consensus 5 kFGDdvDTD~IIPGrYLR~--~~D~~eLA~haM~g~~PeF~~kvr~GDviVAGkNF------G-----cGSSREQA~~-- 69 (159)
T TIGR02087 5 KFGDDVDTDVIIPGRYLRT--TDDPDELASHAMEGIDPEFAKKVREGDVIVAGKNF------G-----CGSSREQAAL-- 69 (159)
T ss_pred ECCCCCCCCEECCCCCCCC--CCCHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCC------C-----CCCCHHHHHH--
T ss_conf 6068646770458522575--47778899870558996313407899788714164------7-----7887788999--
Q ss_pred HHHHHCCC--EECCCHHHHH
Q ss_conf 99998897--5788989999
Q gi|254781050|r 273 NAMKEAGI--CIAPSPARIG 290 (300)
Q Consensus 273 ~al~~aGv--~v~~s~~el~ 290 (300)
|||+||| ++|+||.-+.
T Consensus 70 -ALK~aGv~aviA~SFARIF 88 (159)
T TIGR02087 70 -ALKAAGVAAVIAESFARIF 88 (159)
T ss_pred -HHHHCCEEEEEEEECCCHH
T ss_conf -9974790489852016601
No 337
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=41.27 E-value=27 Score=15.76 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=7.8
Q ss_pred HHHHHHHHCCCEECCC
Q ss_conf 9999999889757889
Q gi|254781050|r 270 DKINAMKEAGICIAPS 285 (300)
Q Consensus 270 ~k~~al~~aGv~v~~s 285 (300)
.-++|-.+.|+..+-+
T Consensus 493 eVI~aAde~giaMvfT 508 (515)
T COG0138 493 EVIAAADEHGIAMVFT 508 (515)
T ss_pred HHHHHHHHCCCEEEEC
T ss_conf 9999888619679974
No 338
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=41.07 E-value=28 Score=15.74 Aligned_cols=116 Identities=8% Similarity=0.043 Sum_probs=63.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCC--EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 399988884377999999986269---8189976589988--68727745775314078503578863688621204567
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQ---TQVVGGIHPKKGS--TYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~g---t~ivagV~Pgkgg--~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
|+-+.|. |+-|+--.+-.+.- + .+|. |++.... +.+......+-+..+-.|++++ .|+-++.|.|+.+.
T Consensus 2 kIgfIG~-GnMg~Aii~Gl~~~-~~~~~~i~--v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~--~dvi~LaVKP~~~~ 75 (255)
T PRK06476 2 RIGFIGT-GAITEAMVTGLLSS-PADVSEII--VSPRNAQIAARLAARFAKVRIAKDNQAVVDR--SDVVFLAVRPQIAE 75 (255)
T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCCCCEE--EECCCHHHHHHHHHHCCCEEEECCHHHHHHH--CCEEEEEECHHHHH
T ss_conf 8999864-69999999999978-89925088--9898989999999876955985788999851--88788861788899
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 8899998539958998058846888999999840177189406851013
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
++..+.-...=+.+|-|..|++.....+... ....+--+=||++-.+
T Consensus 76 ~vl~~l~~~~~~~vISi~AGi~i~~l~~~l~--~~~~vvR~MPN~~~~~ 122 (255)
T PRK06476 76 EVLRALRFRPGQTVISVIAATTRAALLKWIG--ADVKLVRAIPLPFVAE 122 (255)
T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHC--CCCCEEEECCCCHHHH
T ss_conf 8877620578978999737877999997618--9986488558708884
No 339
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=41.05 E-value=28 Score=15.73 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=53.2
Q ss_pred CCCCCHHHHCCCCCCCEEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 531407850357886368862120-456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIYVPP-SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~VP~-~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
--|+++-|..... .|.-||=.|| -.|-||..=+-..+=-.+|+=++-+--++..+-++...+. |-|++|++-
T Consensus 118 ~~F~~l~e~~~~~-fD~iiiDTPPig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~KAK~~LEq~-----G~~~LGvvL 190 (207)
T TIGR01007 118 SNFKTLIETLRKY-FDYIIIDTPPIGTVIDAAIIARAVDASILVTDAGKIKKREVKKAKEQLEQA-----GSKFLGVVL 190 (207)
T ss_pred HHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHH-----CCCEEEEEE
T ss_conf 9999999998716-888999518866678899999872977988722532646789999999861-----784115888
No 340
>KOG0203 consensus
Probab=40.62 E-value=20 Score=16.57 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=25.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 368862120456788999985399589980588
Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCITEG 104 (300)
Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviiteG 104 (300)
..|.|=-|...+|||+..|-.+|||.+++.-.+
T Consensus 584 l~s~idPPR~~vP~Av~~CrsAGIkvimVTgdh 616 (1019)
T KOG0203 584 LISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 616 (1019)
T ss_pred HHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf 343038986568166666576081599993775
No 341
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=40.54 E-value=28 Score=15.68 Aligned_cols=37 Identities=3% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 678899998539958998058846888999999840177
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300)
..+.+.+|.++||+.+++++-. ..+..+++++++++.
T Consensus 22 ~~~vl~~a~~~gV~~~i~~g~~--~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 22 VDDVLAKAAARDVKFCLAVATT--LPGYLHMRDLVGERD 58 (265)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC
T ss_conf 9999999998699889995399--899999999985399
No 342
>PRK08636 aspartate aminotransferase; Provisional
Probab=40.49 E-value=28 Score=15.68 Aligned_cols=75 Identities=12% Similarity=-0.010 Sum_probs=44.0
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH----H------HHHHHHHHHC---CCCEEEEECCCC------CHHHHHHHHHH
Q ss_conf 753140785035788636886212045----6------7889999853---995899805884------68889999998
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG----A------GDAIIESIEA---EIPLIVCITEGI------PVLDMVRVKAR 116 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~----v------~dai~Ea~~a---gik~iviiteGi------p~~d~~~l~~~ 116 (300)
-|.|..-..+....+ ..++.+|-.. - ...+.++++. ..|.+++.+-+= +..+..+|.++
T Consensus 126 ~P~Y~~y~~~~~~~g--~~~~~~~l~~~~~~~~d~~~~~~~le~~~~~~~~ktk~iiln~P~NPTG~v~s~~~l~~i~~l 203 (403)
T PRK08636 126 DPAYPIHSQAFILAG--GNVHKMPLEYNEDFELDEDKFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVAL 203 (403)
T ss_pred CCCCCCHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 888703899999849--968997433577742466652025899876268871799989998998878899999999999
Q ss_pred HHCCCCEEEECCCCEE
Q ss_conf 4017718940685101
Q gi|254781050|r 117 LEKSSSRLIGPNCPGI 132 (300)
Q Consensus 117 A~~~g~riiGPNc~Gi 132 (300)
|+++++.||==.+-.-
T Consensus 204 a~~~~i~visDEiY~~ 219 (403)
T PRK08636 204 AKKERFYIISDIAYAD 219 (403)
T ss_pred HHHCCEEEEECCCHHH
T ss_conf 9865938996264000
No 343
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=40.39 E-value=28 Score=15.67 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=74.0
Q ss_pred CCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHH------HHHHHHHHHCCCCEEEECC
Q ss_conf 314078503578863688621204567889999853---9958998058846888------9999998401771894068
Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEA---EIPLIVCITEGIPVLD------MVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~a---gik~iviiteGip~~d------~~~l~~~A~~~g~riiGPN 128 (300)
+-....||.+.. .+.+-|+|+|.+|+.+....-+. .|+.+.++ |||.-. ..|..+..+ . |-+
T Consensus 29 I~~Lc~eA~~~~-~~~aAVCV~P~~V~~a~~~L~~~~~~~V~vatVv--gFP~G~~~~~~k~~E~~~Ai~-~-----GAd 99 (258)
T PRK05283 29 VIALCHQAKTPV-GNTAAICIYPRFIPIARKTLKEQGTPEIRIATVT--NFPHGNDDIAIALAETRAAIA-Y-----GAD 99 (258)
T ss_pred HHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCHHHHHHHHHHHHH-C-----CCC
T ss_conf 999999997436-9845999899999999999973489988579993--679999957789999999998-7-----995
Q ss_pred CCEE-ECCCCHHCCE-------E-CCCCCCCCC--EEEEEECCCHHH-HHHH----HHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 5101-3555100020-------0-112357786--799980541478-9999----999719951676405567446789
Q gi|254781050|r 129 CPGI-LTPDSCKIGI-------M-PGSIFRKGS--VGILSRSGTLTY-EAVF----QTSQEGLGQSTAVGIGGDPVKGTE 192 (300)
Q Consensus 129 c~Gi-i~p~~~~lgi-------~-p~~~~~pG~--VgivSqSG~l~~-e~~~----~~~~~g~G~S~~VsiG~D~~~G~~ 192 (300)
=.-+ ++.+..+-|- + .-.-...++ +=+|=-+|-|+. +... .....|--|=+ -|+|-.+ .|.+
T Consensus 100 EIDmVin~~~~~~g~~~~v~~~i~~v~~a~~~~~~LKVIlET~~L~~~e~I~~As~~a~~aGADFVK-TSTGk~~-~gAT 177 (258)
T PRK05283 100 EVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIK-TSTGKVP-VNAT 177 (258)
T ss_pred EEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE-CCCCCCC-CCCC
T ss_conf 6654450898857887999999999999808984389997403478589999999999996979888-8999899-9979
Q ss_pred HHHHHHHHHC--CCCCC-EEEEEEECCCHHH-HHHHHHHHHHHH
Q ss_conf 9999999973--99872-8899970587248-999999998642
Q gi|254781050|r 193 FIDVLELFLA--DEATE-SIVMVGEIGGSAE-EEAAQFLKDEAK 232 (300)
Q Consensus 193 ~~d~L~~~~~--Dp~T~-~Ivl~gEiGG~~E-~~aa~fi~~~~~ 232 (300)
..++.-+++. |..+. .+-+= =-||... +++.+|+.-..+
T Consensus 178 ~e~v~~M~~aI~~~~~G~~vGvK-asGGIrt~~dA~~yl~L~~~ 220 (258)
T PRK05283 178 LEAARIMLEVIRDMGVGKTVGFK-PAGGVRTAEDAAQYLALADE 220 (258)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999986458865676-25886899999999999999
No 344
>pfam00378 ECH Enoyl-CoA hydratase/isomerase family. This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase.
Probab=40.32 E-value=28 Score=15.66 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCCCEEEEEEEC-----CCHHHH--------------HHHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 99999999739987288999705-----872489--------------999999986422675526899843015765
Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGEI-----GGSAEE--------------EAAQFLKDEAKRGRKKPIVGFVAGKTAPPG 251 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gEi-----GG~~E~--------------~aa~fi~~~~~~~~~KPVva~~~GrtAp~g 251 (300)
+.+.++...+|++.++|++-++- |++..+ ...+.... -....||+|+.+-|.....|
T Consensus 22 l~~~~~~~~~d~~i~vvil~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~PvIa~v~G~a~GgG 97 (169)
T pfam00378 22 LIQALEKLEQDPSVRAVVLTGAPGAFSAGADIKEMAAKRPAQQAQFSLEALDLWSR--LEDLPKPVIAAVNGYALGGG 97 (169)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH--HHHCCCCEEEEECCCEECCC
T ss_conf 99999999868994599997899642258888998616837788999999999999--99689989999668365046
No 345
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=40.06 E-value=29 Score=15.64 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=35.2
Q ss_pred CCCCHHHHCCC---CCCCEEEEECCHHHH---HHHHHHHHH-CCCCEEEEECCCCC
Q ss_conf 31407850357---886368862120456---788999985-39958998058846
Q gi|254781050|r 58 VFTTVAEAKER---TAANASVIYVPPSGA---GDAIIESIE-AEIPLIVCITEGIP 106 (300)
Q Consensus 58 vy~sv~ea~~~---~~~D~avI~VP~~~v---~dai~Ea~~-agik~iviiteGip 106 (300)
++..+++..+. ..++-+||.||+.|- -.|..+|++ ||++.+=+|.|-.+
T Consensus 144 IL~kLK~~AE~~lg~~V~~AVITVPAyFnd~QR~AtkdAa~iAGL~VlrlInEPTA 199 (657)
T PTZ00186 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTA 199 (657)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 99999999999858997719999589899899999999999849941100055779
No 346
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=39.66 E-value=29 Score=15.60 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCEEEEECCCCCHHHHH----HHHHHHHCCCCEEEECCCC--------EE-ECCCCHHCCEEC-----CCCCCCCCEEEE
Q ss_conf 95899805884688899----9999840177189406851--------01-355510002001-----123577867999
Q gi|254781050|r 95 IPLIVCITEGIPVLDMV----RVKARLEKSSSRLIGPNCP--------GI-LTPDSCKIGIMP-----GSIFRKGSVGIL 156 (300)
Q Consensus 95 ik~iviiteGip~~d~~----~l~~~A~~~g~riiGPNc~--------Gi-i~p~~~~lgi~p-----~~~~~pG~Vgiv 156 (300)
+-.-+++.||+|..+.. -+.+.|++.|+.++|-.|. |. +.-+..-+|+.. ....+||..=++
T Consensus 89 l~~~~~l~eg~~~~~L~~i~~~m~~aa~~~gV~iV~GdT~vv~gd~v~g~~i~~~v~~iGv~~~~~~~~~~ArpGD~Ilv 168 (346)
T cd02691 89 LLSDIHLADDGDVGKLFDFTAGVTAVSEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKSDPSRRKNAEPGDLILM 168 (346)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf 38999966999999999999999999998599897147368369946643689988887740477641147999999999
Q ss_pred E
Q ss_conf 8
Q gi|254781050|r 157 S 157 (300)
Q Consensus 157 S 157 (300)
|
T Consensus 169 s 169 (346)
T cd02691 169 T 169 (346)
T ss_pred E
T ss_conf 7
No 347
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=39.60 E-value=29 Score=15.59 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=69.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC
Q ss_conf 7889999853995899805884688----899999984017718940685101355510002001123577867999805
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVL----DMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS 159 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~----d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS 159 (300)
.+.+.+|+++|-..+++=.+..|.. ..++++++|+..|+.+=+= +|.+++. .. ++++..
T Consensus 89 ~~~~~~ai~~GftSVM~DgS~lp~eeNi~~Tk~vv~~Ah~~gv~VEaE------------lG~igg~---Ed--~~~~~~ 151 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAE------------VGTIGGE---ED--GIIGKG 151 (293)
T ss_pred CHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE------------EECCCCC---CC--CCCCCC
T ss_conf 289999998299879987998999999999999999998759948998------------5012564---67--866666
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCC--CCC----CCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf 41478999999971995167640556--744----6789999999997399872889997058724899999999
Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGG--DPV----KGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLK 228 (300)
Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~--D~~----~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~ 228 (300)
-....+.+....+.|+ -+..|++|| -.+ ..++| |.|+-+.+--..--+||.|=- |..+++.++.++
T Consensus 152 ~~~~~e~a~~f~eTgv-D~LAvaiGt~HG~Y~~~~~~L~~-d~l~~I~~~v~~vPLVLHGgS-G~~~e~i~~ai~ 223 (293)
T PRK07315 152 ELAPIEDAKAMVETGI-DFLAAGIGNIHGPYPENWEGLDL-DHLEKLTEAVPGFPIVLHGGS-GIPDDQIQEAIK 223 (293)
T ss_pred CCCCHHHHHHHHHCCC-CEEEHHHCCCCCCCCCCCCCCCH-HHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHH
T ss_conf 6688889999987066-43401204524553899987689-999999851799857975899-999999999998
No 348
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.58 E-value=29 Score=15.59 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=3.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254781050|r 287 ARIGRSLVELL 297 (300)
Q Consensus 287 ~el~~~l~~~l 297 (300)
+|=++.-+++.
T Consensus 472 e~RG~~F~~~V 482 (487)
T PRK03369 472 ADRGDAFAAAV 482 (487)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 349
>TIGR00465 ilvC ketol-acid reductoisomerase; InterPro: IPR013023 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine . The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor. ; GO: 0016491 oxidoreductase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=39.43 E-value=29 Score=15.57 Aligned_cols=141 Identities=20% Similarity=0.209 Sum_probs=89.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---CEEECCCCCC--CCCC--CCHHHHCCCCCCCEEEEECCHH
Q ss_conf 7399988884377999999986269818997658998---8687277457--7531--4078503578863688621204
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG---STYWTGGNVN--VPVF--TTVAEAKERTAANASVIYVPPS 81 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg---g~~~~g~~~~--iPvy--~sv~ea~~~~~~D~avI~VP~~ 81 (300)
.++.+.|. |.+|..|...+.+- |.+++.|+.++.- -..|.....+ +|-+ .++.|+.. ..|+..+.+|-.
T Consensus 4 ~~~~~~g~-g~~g~~~~~~~~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~gw~pg~~~~~~~~~~~--~~~~~~~l~pd~ 79 (344)
T TIGR00465 4 KTVAIIGY-GSQGHAQGLNLRDS-GLNVIVGLRKGGIAEKRASWKKAEEDGWVPGFKVLTVEEAAK--RADLILNLLPDE 79 (344)
T ss_pred CEEEEEEC-CCCCCHHHCCCCCC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC--CCCEEEEECCHH
T ss_conf 61788732-75320000121114-531577405430234555565442124556511233454430--134544323213
Q ss_pred HHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHH-HHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEE
Q ss_conf 5678899998539--9589980588468889999-998401771894068510135551000200112357786799980
Q gi|254781050|r 82 GAGDAIIESIEAE--IPLIVCITEGIPVLDMVRV-KARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSR 158 (300)
Q Consensus 82 ~v~dai~Ea~~ag--ik~iviiteGip~~d~~~l-~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSq 158 (300)
.-......-+..- -...+.++.|+..+..... ++.-+.-++.++.|.|+|-.......-|.- -|+-+++-..
T Consensus 80 ~~~~~~~~~~~p~~~~g~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~p~~pg~~~~~~~~~g~g-----~~~~~~~~~~ 154 (344)
T TIGR00465 80 VQPEVYEAEIKPLLKEGKTLGFSHGFNIHFGGLVHVEPPKDVDVVLVAPKGPGALVRRTYKEGFG-----VPGLVAVEQD 154 (344)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCEECCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHCCC-----CCEEEEEECC
T ss_conf 44566677766555226421320255200011122014355525886067761678888762368-----5303565125
No 350
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=39.27 E-value=29 Score=15.56 Aligned_cols=118 Identities=23% Similarity=0.315 Sum_probs=52.9
Q ss_pred CCCCEEEEEECCCHHHH------HHHHHHHCCCCEEEEEEC-CC-CCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH
Q ss_conf 77867999805414789------999999719951676405-56-74467899999999973998728899970587248
Q gi|254781050|r 149 RKGSVGILSRSGTLTYE------AVFQTSQEGLGQSTAVGI-GG-DPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE 220 (300)
Q Consensus 149 ~pG~VgivSqSG~l~~e------~~~~~~~~g~G~S~~Vsi-G~-D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E 220 (300)
++|+|++++-+-+.... ..+.+.+..-++...-.. ++ |. ...+.-.-++|...|+.++|... ++...
T Consensus 124 ~~g~i~ii~g~~~~~~~~~R~~Gf~~~l~~~~p~~~iv~~~~~~~~~--~~a~~~~~~lL~~~Pdi~ai~~~---~~~~~ 198 (275)
T cd06307 124 RPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLEGLDDP--ARAYEATRKLLARHPDLVGIYNA---GGGNR 198 (275)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEEEC---CCCHH
T ss_conf 89779999079875329999999999998658887402466178865--99999999999749996299984---87169
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC---EECCCHHHHHHHHHHHH
Q ss_conf 999999998642267552689984301576553220011224888899999999998897---57889899999999998
Q gi|254781050|r 221 EEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI---CIAPSPARIGRSLVELL 297 (300)
Q Consensus 221 ~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv---~v~~s~~el~~~l~~~l 297 (300)
-+.+.++++ .+.+.|.. .|- +....-.+++++ |. .+..+|.+++..-.+.|
T Consensus 199 -ga~~Al~~~---g~~~~v~v--vg~-------------------D~~~~~~~~l~~-G~i~a~v~Q~P~~~G~~Av~~l 252 (275)
T cd06307 199 -GVIRALREA---GRAGKVVF--VGH-------------------ELTPETRAALRD-GTIDAVIDQDPGHLARSAVRVL 252 (275)
T ss_pred -HHHHHHHHC---CCCCCEEE--EEC-------------------CCCHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHH
T ss_conf -999999973---99998699--962-------------------799899999981-9837999359999999999999
No 351
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family; InterPro: IPR010140 This entry represents the histidinol phosphate phosphatase, HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyses the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in Escherichia coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; not all members of this family may act on HisJ.; GO: 0004401 histidinol-phosphatase activity, 0000105 histidine biosynthetic process.
Probab=39.12 E-value=24 Score=16.17 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 678899998539958998058846
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIP 106 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip 106 (300)
.-+.|.||+++|.+.+ |+|||.|
T Consensus 19 ~~~~v~~Ai~~gf~~~-cfTEH~P 41 (301)
T TIGR01856 19 LEEVVQEAIQKGFEEI-CFTEHAP 41 (301)
T ss_pred HHHHHHHHHHCCCCCE-EECCCCC
T ss_conf 8999999997078812-2103686
No 352
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=39.02 E-value=30 Score=15.53 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEEC
Q ss_conf 753140785035788636886212045678899998---53995899805884688899999984017-----7189406
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESI---EAEIPLIVCITEGIPVLDMVRVKARLEKS-----SSRLIGP 127 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~---~agik~iviiteGip~~d~~~l~~~A~~~-----g~riiGP 127 (300)
+-....+.++.+. +|.-++.||..+..+.+.... ..+.+ +|..|-|+-....+.+-++.++- =.-|-||
T Consensus 59 l~at~Dl~~a~~~--ad~iv~avPs~~~r~v~~~l~~~l~~~~~-iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGP 135 (329)
T COG0240 59 LKATTDLAEALDG--ADIIVIAVPSQALREVLRQLKPLLLKDAI-IVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGP 135 (329)
T ss_pred CCCCCCHHHHHHC--CCEEEEECCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf 2224689999722--99999978757899999987643367874-99974465588765199999997399818999786
Q ss_pred CC
Q ss_conf 85
Q gi|254781050|r 128 NC 129 (300)
Q Consensus 128 Nc 129 (300)
|-
T Consensus 136 s~ 137 (329)
T COG0240 136 SF 137 (329)
T ss_pred CH
T ss_conf 07
No 353
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=39.00 E-value=30 Score=15.53 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=77.7
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEE---CCCCCCCCCCCCHHHHCCCC-CCCEEEEECCH
Q ss_conf 17973999888843779999999862698189-976589988687---27745775314078503578-86368862120
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYW---TGGNVNVPVFTTVAEAKERT-AANASVIYVPP 80 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~---~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP~ 80 (300)
+..+.+=+.|+ |.-|.--+.++.+- |-+|. .-.++.|--+.. ......++.|.++.|.+..- .+..-++.||+
T Consensus 3 ~~~~~IGiIGL-GvMG~nmA~Nl~~~-G~~V~vynrt~~k~~~~~~~~~~~~~~i~~~~sl~e~v~sl~~pr~Iilmv~a 80 (474)
T PTZ00142 3 EGESDIGLIGL-AVMGQNLSLNMYSR-GFKVSVYNRTTEKVEEFMKKAKEGNKFVKGYHSLEELVNSLKRPRRVMLLIKA 80 (474)
T ss_pred CCCCCEEEEEE-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 77674668736-38679999999978-98799977987999999985322467764667899999737999989998269
Q ss_pred HHHHHHHHHHHHCCC-CEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 456788999985399-5899805-8846888999999840177189406851013
Q gi|254781050|r 81 SGAGDAIIESIEAEI-PLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 81 ~~v~dai~Ea~~agi-k~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
-...|.+.+.+-..+ +.-+||- ...--+|..+..+.++++|+..+|---.|-.
T Consensus 81 G~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~rr~~~l~~kgI~fld~GVSGGe 135 (474)
T PTZ00142 81 GEAVDEFIDNILPHLEKGDIIIDGGNEWYNNSERRIKLCKEKGILYIGMGVSGGE 135 (474)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCH
T ss_conf 8259999999985088999898799888657999999998579918647888435
No 354
>pfam01120 Alpha_L_fucos Alpha-L-fucosidase.
Probab=38.86 E-value=30 Score=15.52 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCEEEEECCHHHHHHHHHHHH-HCCCCEEEEEC---CCCC----------------HHHH-HHHHHHHHCCCCEE
Q ss_conf 636886212045678899998-53995899805---8846----------------8889-99999840177189
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESI-EAEIPLIVCIT---EGIP----------------VLDM-VRVKARLEKSSSRL 124 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~-~agik~iviit---eGip----------------~~d~-~~l~~~A~~~g~ri 124 (300)
-|++--|-|.+|-++...++. ++|.|-+|+.| +||. .+|. .++.+.||++|+++
T Consensus 81 ~~~~~~Fnp~~fd~~~Wa~~ak~AGakY~vlTaKHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~rk~Glk~ 155 (344)
T pfam01120 81 GDFAKQFNPEKFDADEWAKLAKAAGAKYVVLTTKHHDGFTMWDSKYSDWNSVDTGPKRDIVGELAKACRKNGIKF 155 (344)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 999726795007999999999985996588613415775257788999877678999776999999999859867
No 355
>pfam02603 Hpr_kinase_N HPr Serine kinase N terminus. This family represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phospho-relay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains.
Probab=38.64 E-value=30 Score=15.50 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=9.6
Q ss_pred HHHHHHCCCEECCCHHHHHH
Q ss_conf 99999889757889899999
Q gi|254781050|r 272 INAMKEAGICIAPSPARIGR 291 (300)
Q Consensus 272 ~~al~~aGv~v~~s~~el~~ 291 (300)
.++-++.++++-.|+..-.+
T Consensus 98 ~~~a~~~~vPll~t~~~ts~ 117 (127)
T pfam02603 98 LEAAKKYGIPLLRSKLSTSR 117 (127)
T ss_pred HHHHHHHCCCEEECCCCHHH
T ss_conf 99999979957982885899
No 356
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=38.48 E-value=30 Score=15.48 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=64.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCEE-------ECC---------------CCCCCCCC---CCH
Q ss_conf 739998888437799999998626-9818997658998868-------727---------------74577531---407
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYC-QTQVVGGIHPKKGSTY-------WTG---------------GNVNVPVF---TTV 62 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~-gt~ivagV~Pgkgg~~-------~~g---------------~~~~iPvy---~sv 62 (300)
.|+.+-|-||.-|+.-.+....+- .-+|++-+. ++.-.. +.. ..+..-+| +.+
T Consensus 2 k~i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~lsa-~~n~~~L~~q~~~f~p~~v~i~~~~~~~~~~~~~~~~~~~g~~~l 80 (379)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRHPDRFRVVALSA-GSNVELLAEQIREFRPKYVVVADEAAAKELKAALAGKVLAGEEGL 80 (379)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEE-CCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCEEECHHHH
T ss_conf 7899985695888999999995868758999992-897999999999949999999288999999875588288688999
Q ss_pred HHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 850357886368862120456788999985399589980588468889999998401771894
Q gi|254781050|r 63 AEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 63 ~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.+..+...+|..+..+....-....++|++.|-+.+..=.|-+=.-. .-+.+.+++++.+++
T Consensus 81 ~~~~~~~~~D~vi~aisG~~GL~pt~~ai~~gk~laLANKEsiV~~G-~li~~~~k~~~~~Ii 142 (379)
T PRK05447 81 CELAALPEADVVVAAIVGAAGLLPTLAAIKAGKRIALANKESLVCAG-ELVMDAAKKSGAQIL 142 (379)
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCHHEECH-HHHHHHHHHCCCEEE
T ss_conf 99973678999998134364579999999739938984340310247-999999986398686
No 357
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.20 E-value=31 Score=15.45 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCC--------EEEEECCCCCCEEEC-CCCCCCCCCCCHHHHCCCCCCCEEEEE
Q ss_conf 79739998888437799999998626981--------899765899886872-774577531407850357886368862
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQ--------VVGGIHPKKGSTYWT-GGNVNVPVFTTVAEAKERTAANASVIY 77 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~--------ivagV~Pgkgg~~~~-g~~~~iPvy~sv~ea~~~~~~D~avI~ 77 (300)
++++|+|-|. |--|++-+.. +...|-. .|.--|-.+ |.+. ...++.|=-...+|...+-+++.-|..
T Consensus 10 ~~s~V~v~G~-GGvGs~~a~~-LarsGVG~l~lvD~D~v~~SNLnR--Q~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~ 85 (231)
T cd00755 10 RNAHVAVVGL-GGVGSWAAEA-LARSGVGKLTLIDFDVVCVSNLNR--QIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HCCCEEEECC-CHHHHHHHHH-HHHCCCCEEEEEECCEECCCCHHH--HHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 5497899888-6368999999-998099759997199904544443--30165633699728999999998799988998
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 1204567889999853995899805884688899999984017718940685101
Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
.+-.+.++-+.|-+......++=-++.++.+- .|.+.|+++++.+| .|+|-
T Consensus 86 ~~~~~~~~n~~~ll~~~~D~VvDaiD~~~~K~--~l~~~c~~~~iplI--ss~Ga 136 (231)
T cd00755 86 VEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKV--ALIAYCRKRKIPVI--SSMGA 136 (231)
T ss_pred EHHHCCHHHHHHHHCCCCCEEEECCCCHHHHH--HHHHHHHHCCCEEE--EECCC
T ss_conf 62515998999984547777853442487799--99999998299089--98673
No 358
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=38.11 E-value=31 Score=15.44 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 41478999999971995167640556744678999999999739987288999705872489999999986422675526
Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPI 239 (300)
Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPV 239 (300)
|.-..++...+.+.|+ .+|... +.-|.+.+.+++++--++++-.+ ....++++.-+++..+=||
T Consensus 3 ~~~~~~l~~~l~~~~~---~vv~~~-------~~~d~~~~~~~~~~i~avil~~~------~~~~~ll~~ir~~n~~lPv 66 (111)
T pfam03709 3 IAASRELAEALEATGR---EVVDAT-------STDDLLSLIETFTDIAAVVLSWD------DEARGLLDEIRRRNFDLPV 66 (111)
T ss_pred CHHHHHHHHHHHHCCC---EEEEEC-------CHHHHHHHHHHCCCCCEEEEEEC------HHHHHHHHHHHHHCCCCCE
T ss_conf 0458999999997898---899748-------78999999983878768999846------0689999999974789998
Q ss_pred EEEEEEEC
Q ss_conf 89984301
Q gi|254781050|r 240 VGFVAGKT 247 (300)
Q Consensus 240 va~~~Grt 247 (300)
.++.--++
T Consensus 67 Fl~~~~~~ 74 (111)
T pfam03709 67 FLLAETRT 74 (111)
T ss_pred EEEECHHH
T ss_conf 98844125
No 359
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.97 E-value=28 Score=15.73 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHCCCCEEE
Q ss_conf 468889999998401771894
Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 105 ip~~d~~~l~~~A~~~g~rii 125 (300)
....|.++|+++|+.+|++||
T Consensus 94 YT~~di~eiV~YA~~RgI~VI 114 (445)
T cd06569 94 YSRADYIEILKYAKARHIEVI 114 (445)
T ss_pred CCHHHHHHHHHHHHHCCCEEE
T ss_conf 689999999999997599886
No 360
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.41 E-value=32 Score=15.37 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=41.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-----CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 7399988884377999999986269818997658-----99886872774577531407850357886368862120456
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-----KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-----gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
.|+++-| |...+..+.+..++- +..||+=+|- |+|.. -.|..|++...++++- +|-|...-
T Consensus 2 mkivF~G-Tp~fa~~~L~~L~~~-~~eivaV~Tqpdkp~gR~~~---------l~~spVk~~A~~~~ip---v~qP~~l~ 67 (307)
T COG0223 2 MRIVFFG-TPEFAVPSLEALIEA-GHEIVAVVTQPDKPAGRGKK---------LTPSPVKRLALELGIP---VFQPEKLN 67 (307)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCC---------CCCCHHHHHHHHCCCC---EECCCCCC
T ss_conf 1799976-744549999999828-98048999489976678785---------8888389999974995---56644478
Q ss_pred HHHHHHHHHC-CCCEEEEECCC
Q ss_conf 7889999853-99589980588
Q gi|254781050|r 84 GDAIIESIEA-EIPLIVCITEG 104 (300)
Q Consensus 84 ~dai~Ea~~a-gik~iviiteG 104 (300)
.+...|.++. .-..+|++.=|
T Consensus 68 ~~e~~~~l~~l~~D~ivvvayG 89 (307)
T COG0223 68 DPEFLEELAALDPDLIVVVAYG 89 (307)
T ss_pred CHHHHHHHHCCCCCEEEEEEHH
T ss_conf 6899999860399999997422
No 361
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=37.33 E-value=32 Score=15.37 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=6.3
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98539958998058
Q gi|254781050|r 90 SIEAEIPLIVCITE 103 (300)
Q Consensus 90 a~~agik~iviite 103 (300)
..++|...+-|.||
T Consensus 77 Y~~~GA~aiSVLTd 90 (254)
T pfam00218 77 YEAAGASAISVLTE 90 (254)
T ss_pred HHHCCCCEEEEECC
T ss_conf 99779837998426
No 362
>KOG3505 consensus
Probab=36.99 E-value=27 Score=15.82 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=35.6
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999997199516764055674467899999999973998728899970
Q gi|254781050|r 166 AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 166 ~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
+...++.+|-||+...|.-. ..+.|.+..-||-.+-=||+-|
T Consensus 10 lirlvStAgtGf~~~~s~~k-------~~~klt~~kYDPvVkr~VLF~E 51 (55)
T KOG3505 10 LIRLVSTAGTGFFYVKSRKK-------LAEKLTFRKYDPVVKRHVLFTE 51 (55)
T ss_pred HHHHHHHCCCCEEEEEECCC-------CCCCCEEEECCCHHEEEEEEEH
T ss_conf 89888753662699973444-------0300224541700201566651
No 363
>PRK06545 prephenate dehydrogenase; Validated
Probab=36.96 E-value=32 Score=15.33 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=61.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577--5314078503578863688621204567889
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
+|+|.|. |--|.--+....+++-..-+.|+.+..--.... ...++ -.+.+..++++ ++|+-++++|+..+.+.+
T Consensus 2 ~V~IiGl-GLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A-~~~g~id~~~~~~~~~~~--~~DlVvlatPv~~~~~~l 77 (357)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSGAQLARA-LGFGVIDELAEDLARAAA--EADLIVLAVPVDATAALL 77 (357)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH-HHCCCCCEECCCHHHHCC--CCCEEEECCCHHHHHHHH
T ss_conf 7999977-878999999998549976999966999999999-868997730488767156--799999949999999999
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC---CCCEEEE
Q ss_conf 99985399589980588468889999998401---7718940
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEK---SSSRLIG 126 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~---~g~riiG 126 (300)
.+...-. .=.+||+==..+. .+.+.+++ .+.+.||
T Consensus 78 ~~l~~l~--~~~ivTDVgSvK~--~I~~~~~~~~~~~~~FVg 115 (357)
T PRK06545 78 AELADLA--PGVIVTDVGSVKG--AILAEAEALGLKDVRFVG 115 (357)
T ss_pred HHHHHCC--CCCEEEECCCCHH--HHHHHHHHHCCCCCCEEC
T ss_conf 9987238--9978997510079--999999983688886456
No 364
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=36.92 E-value=32 Score=15.33 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=48.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCC-CCCCCC--CCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 3999888843779999999862698189976589988687277-457753--1407850357886368862120456788
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGG-NVNVPV--FTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~-~~~iPv--y~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
||+|.|--|||-..--+....-.-.+| -+.||-+|..-..+ ...+.. ++.+.+..++..+|+.||-=.++.+...
T Consensus 2 kVLviGsGgREHAla~~l~~s~~v~~v--~~aPGN~g~~~~a~~~~~i~~~d~~~i~~~a~~~~iDLvvvGPE~PL~~Gi 79 (415)
T PRK13790 2 NVLVIGAGGREHALAYKLNQSNLVKQV--FVIPGNEAMTPIAEVHTEISESDHQAILDFAKQQNVDWVVIGPEQPLIDGL 79 (415)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE--EEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf 799988788999999999629898989--997895576522302467685589999999998199999989607866348
Q ss_pred HHHHHHCCCC
Q ss_conf 9999853995
Q gi|254781050|r 87 IIESIEAEIP 96 (300)
Q Consensus 87 i~Ea~~agik 96 (300)
+-..-++|++
T Consensus 80 vD~l~~~gi~ 89 (415)
T PRK13790 80 ADILRANGFK 89 (415)
T ss_pred HHHHHCCCCE
T ss_conf 8886438975
No 365
>PRK00943 selenophosphate synthetase; Provisional
Probab=36.75 E-value=32 Score=15.31 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCEE-----EEEC-CCCCHHHHHH----HHHHHHCCCCEEEECCCCEEECCCCHHC-----CEE-CC-
Q ss_conf 6788999985399589-----9805-8846888999----9998401771894068510135551000-----200-11-
Q gi|254781050|r 83 AGDAIIESIEAEIPLI-----VCIT-EGIPVLDMVR----VKARLEKSSSRLIGPNCPGILTPDSCKI-----GIM-PG- 145 (300)
Q Consensus 83 v~dai~Ea~~agik~i-----viit-eGip~~d~~~----l~~~A~~~g~riiGPNc~Gii~p~~~~l-----gi~-p~- 145 (300)
+..++-+....|.+-. +.+. +..++++..+ ..+.+++.|+.|+|--+ +.+|. ..+ |.. |.
T Consensus 85 a~~alsDi~AmGa~P~~aL~~~~~p~~~l~~e~l~~il~g~~~~~~e~gv~ivGGHT--~~~~e-~~ig~~v~G~~~~~~ 161 (347)
T PRK00943 85 ATNAISDVYAMGGKPIMALAILGWPINVLPPEVAREVLEGGRDVCREAGIPLAGGHS--IDAPE-PIFGLAVTGVVHPER 161 (347)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCE--EECCC-CEEEEEEEEEECCCC
T ss_conf 998576898838948899988430202167999999999999999985990534656--75466-525568986774632
Q ss_pred ----CCCCCCCEEEEEEC
Q ss_conf ----23577867999805
Q gi|254781050|r 146 ----SIFRKGSVGILSRS 159 (300)
Q Consensus 146 ----~~~~pG~VgivSqS 159 (300)
.-.+||.+=++++-
T Consensus 162 ~~~~~~a~~GD~liLTKp 179 (347)
T PRK00943 162 VKRNAGAKAGDVLILTKP 179 (347)
T ss_pred CCCCCCCCCCCEEEEECC
T ss_conf 302688888888998257
No 366
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=36.60 E-value=32 Score=15.29 Aligned_cols=10 Identities=0% Similarity=-0.011 Sum_probs=4.4
Q ss_pred CCCEEEECCC
Q ss_conf 7718940685
Q gi|254781050|r 120 SSSRLIGPNC 129 (300)
Q Consensus 120 ~g~riiGPNc 129 (300)
..+|+..+++
T Consensus 118 cD~~ia~~~a 127 (261)
T PRK11423 118 CDLIIAASTS 127 (261)
T ss_pred HHHHCCCCCC
T ss_conf 7542101162
No 367
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=36.52 E-value=33 Score=15.29 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 74467899999999973998728899970-5872489999999986422675526899843015
Q gi|254781050|r 186 DPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTA 248 (300)
Q Consensus 186 D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtA 248 (300)
..+||++ .|++++|.+ ..-|.||+=+= .|+. -.+.++||+.-+ ....+=||+...-++-
T Consensus 226 k~yPGl~-~di~~~~~~-~~YkGiViegtG~G~~-P~~~R~~l~~~~-ea~d~GvVVV~ttQCl 285 (347)
T TIGR00519 226 KLYPGLS-PDIIRAYLS-KGYKGIVIEGTGLGHV-PQELRDILSKLQ-EAIDSGVVVVMTTQCL 285 (347)
T ss_pred EECCCCC-HHHHHHHCC-CCCEEEEEEECCCCCC-CHHHHHHHHHHH-HHHHCCEEEEEEEEEC
T ss_conf 8668988-899998626-9934899820467888-356889999877-6322871688754431
No 368
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=36.52 E-value=33 Score=15.29 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=9.1
Q ss_pred HHHHHHHHHCCCEEC
Q ss_conf 999999998897578
Q gi|254781050|r 269 EDKINAMKEAGICIA 283 (300)
Q Consensus 269 ~~k~~al~~aGv~v~ 283 (300)
..-++.|+++|+.+.
T Consensus 254 ~~a~~~L~~~g~~Vl 268 (274)
T TIGR03029 254 TSLKEHLSGVGVRVV 268 (274)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999997799668
No 369
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=36.19 E-value=33 Score=15.25 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCCCCEEEEEEEECC---------------CCCCCCCEEEEECCC
Q ss_conf 675526899843015---------------765532200112248
Q gi|254781050|r 234 GRKKPIVGFVAGKTA---------------PPGRTMGHAGAVISG 263 (300)
Q Consensus 234 ~~~KPVva~~~GrtA---------------p~g~~~gHaGAi~~~ 263 (300)
...||||+.++|-.. ....+||.||.-+++
T Consensus 114 ~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGS 158 (282)
T COG0447 114 TMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGS 158 (282)
T ss_pred HCCCCEEEEECCEEECCCCEEEEEEEEEEECCCCHHCCCCCCCCC
T ss_conf 489655999703750586279998542550001311378998342
No 370
>PRK08508 biotin synthase; Provisional
Probab=35.98 E-value=33 Score=15.23 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHH---HHHHHHHCC--CCEEEECCCCEEECCCCHH----CCEEC---
Q ss_conf 20456788999985399589980588468--8899---999984017--7189406851013555100----02001---
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPV--LDMV---RVKARLEKS--SSRLIGPNCPGILTPDSCK----IGIMP--- 144 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~--~d~~---~l~~~A~~~--g~riiGPNc~Gii~p~~~~----lgi~p--- 144 (300)
++..+.+++.+|.+.|+....++++|-.. ++.. ++++..++. ++.+.. |+|+++..+.+ .|.--
T Consensus 41 ~~eeIl~~A~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v~~Ik~~~~~l~~c~--slG~l~~e~~~~LkeAGvdrY~h 118 (279)
T PRK08508 41 EIEQIVQEAKMARANGALGFCLVTAGRGLDDKKLEYVAKAAKAVKKEVPGLHLIA--CNGMASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCHHHHHHHHHCCCCEECC
T ss_conf 9999999999999759976899982368875449999999999863379935761--17857999999999839712307
Q ss_pred -----CCCCCCCCEEEEEECCCHHH--HHHHHHHHCCCCEEE--EEECCCCCCCCCCHHH---HHHHH-HCCCCCCEEEE
Q ss_conf -----12357786799980541478--999999971995167--6405567446789999---99999-73998728899
Q gi|254781050|r 145 -----GSIFRKGSVGILSRSGTLTY--EAVFQTSQEGLGQST--AVGIGGDPVKGTEFID---VLELF-LADEATESIVM 211 (300)
Q Consensus 145 -----~~~~~pG~VgivSqSG~l~~--e~~~~~~~~g~G~S~--~VsiG~D~~~G~~~~d---~L~~~-~~Dp~T~~Ivl 211 (300)
...|+. |.-+-++-. +.+.++.+.|+-.-. .+|+| + ++.| .+-.| +-||+-=-|-.
T Consensus 119 NlETs~~~y~~-----I~tThty~dRl~tl~~~k~aGl~vCsGgIiGlG-E-----t~edrve~a~~L~eL~~dsVPIN~ 187 (279)
T PRK08508 119 NLETSKEFFPK-----ICTTHSWEERFQTCLNAKEAGLGLCSGGIFGLG-E-----SWEDRISMLKSLASLSPHSTPINF 187 (279)
T ss_pred CCCCCHHHHCC-----CCCCCCHHHHHHHHHHHHHCCCEEECCCEEECC-C-----CHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 66767687576-----589988899999999999819948678544789-9-----989999999999838998751567
Q ss_pred EEECCCH-------HHHHHHHHHHHHHHCCCCCCEEEEEEEECC--CCCCCC-CEEE--EECCCCC-----CCHHHHHHH
Q ss_conf 9705872-------489999999986422675526899843015--765532-2001--1224888-----899999999
Q gi|254781050|r 212 VGEIGGS-------AEEEAAQFLKDEAKRGRKKPIVGFVAGKTA--PPGRTM-GHAG--AVISGGK-----GGAEDKINA 274 (300)
Q Consensus 212 ~gEiGG~-------~E~~aa~fi~~~~~~~~~KPVva~~~GrtA--p~g~~~-gHaG--Ai~~~~~-----g~a~~k~~a 274 (300)
+.-|-|+ ...+..+.|...| .-..+-.|-+-+||.. +..+.+ -.+| ++..++. -+.+.-.+.
T Consensus 188 liPi~GTPLe~~~l~~~e~lr~iAl~R-lilP~a~Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~yLTt~G~~~~~D~~m 266 (279)
T PRK08508 188 FIPNPALPLDTPTLSADEALEIVRLAK-EALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEK 266 (279)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCEEEECCCHHHHCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 658999988889999999999999999-9789876562465244556369999984684688866527899786799999
Q ss_pred HHHCCCEECCC
Q ss_conf 99889757889
Q gi|254781050|r 275 MKEAGICIAPS 285 (300)
Q Consensus 275 l~~aGv~v~~s 285 (300)
+++.|..++.+
T Consensus 267 i~~lG~~v~~~ 277 (279)
T PRK08508 267 LKSLGFEFASS 277 (279)
T ss_pred HHHCCCEEECC
T ss_conf 99869934124
No 371
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=35.91 E-value=33 Score=15.23 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=54.2
Q ss_pred CCEEEEEECCCHH---HHHHHH-HHHC-CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 8679998054147---899999-9971-9951676405567446789999999997399872889997058724899999
Q gi|254781050|r 151 GSVGILSRSGTLT---YEAVFQ-TSQE-GLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQ 225 (300)
Q Consensus 151 G~VgivSqSG~l~---~e~~~~-~~~~-g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~ 225 (300)
=-|++|.-.+..+ .+.... ..+. |+=++...-+-.+... .++.+.++-+.+.+..++|++|++ +.++.+
T Consensus 173 ~~V~~v~sdd~yG~~g~~~f~~~~~~~~gICia~~~~ip~~~~~-~~~~~ii~~l~~~s~a~VVVlf~~-----~~~~~~ 246 (463)
T cd06376 173 NYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKIPREPRP-GEFDKIIKRLLETPNARAVIIFAN-----EDDIRR 246 (463)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH-HHHHHHHHHHHHCCCCEEEEEEEC-----CHHHHH
T ss_conf 49999984464248899999999997288569999856778887-899999999985288629999935-----289999
Q ss_pred HHHHHHHCCCCCCEEEEEE
Q ss_conf 9998642267552689984
Q gi|254781050|r 226 FLKDEAKRGRKKPIVGFVA 244 (300)
Q Consensus 226 fi~~~~~~~~~KPVva~~~ 244 (300)
+++++.+...++- ..|++
T Consensus 247 ll~~a~~~~ltg~-~~WI~ 264 (463)
T cd06376 247 VLEAAKRANQVGH-FLWVG 264 (463)
T ss_pred HHHHHHHHCCCCC-EEEEE
T ss_conf 9999997335662-89998
No 372
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=35.90 E-value=33 Score=15.22 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.0
Q ss_pred CCCCEEEECCC
Q ss_conf 17718940685
Q gi|254781050|r 119 KSSSRLIGPNC 129 (300)
Q Consensus 119 ~~g~riiGPNc 129 (300)
...+|+..++.
T Consensus 120 ~cD~~ia~~~a 130 (262)
T PRK08140 120 ACDIVLAARSA 130 (262)
T ss_pred HCCEEEECCCC
T ss_conf 35543303675
No 373
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=35.56 E-value=34 Score=15.19 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC------------C-----H-----HHHHHHHHHHHCCCCEEEEC
Q ss_conf 67889999853995899805884------------6-----8-----88999999840177189406
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGI------------P-----V-----LDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGi------------p-----~-----~d~~~l~~~A~~~g~riiGP 127 (300)
+.+.+.-|..+|+. ++|+-|-. | | .-..-+.++|++++|.|+-|
T Consensus 92 i~~~i~~Aa~~gvn-i~c~qe~w~mpfafctrek~pw~efae~a~~Gptt~~~~~~A~k~~mViv~p 157 (363)
T cd07587 92 IKKIIEAAAMAGVN-IICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP 157 (363)
T ss_pred HHHHHHHHHHCCCC-EEEEEHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEE
T ss_conf 99999999975987-9984001058721113577760221266777936999999999849699984
No 374
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=35.53 E-value=34 Score=15.19 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 97399988884377999999986269818997658998868727745775314078503578863688621204567889
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
..+|+|.|=+|+-|.+.++....- |-.| .-. +| --+++..+..+ ++|+-+|.||=....+.+
T Consensus 98 ~~~i~IIGG~G~mG~~F~~~f~~s-Gy~V-~il--d~------------~dw~~~~~~~~--~advViVsVPI~~T~~VI 159 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-GYQV-RIL--EK------------DDWDRADDILA--DAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHC-CCEE-EEE--CC------------CCCCCHHHHHH--CCCEEEEEECHHHHHHHH
T ss_conf 871799807982779999999967-9879-961--64------------44534898871--799899981458899999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254781050|r 88 IESIE 92 (300)
Q Consensus 88 ~Ea~~ 92 (300)
.|...
T Consensus 160 ~~l~~ 164 (374)
T PRK11199 160 EKLPP 164 (374)
T ss_pred HHCCC
T ss_conf 85778
No 375
>PRK08638 threonine dehydratase; Validated
Probab=35.50 E-value=34 Score=15.18 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC-CC--HHCCEECCCCCCCCCEEEE
Q ss_conf 04567889999853995899805884688899999984017718940685101355-51--0002001123577867999
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP-DS--CKIGIMPGSIFRKGSVGIL 156 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p-~~--~~lgi~p~~~~~pG~Vgiv 156 (300)
.-+......=|...|++..|++.++.|..-...++.+ ...+.+.|.|.-.-..- .+ ..-|...-+.| -+.-++
T Consensus 84 GN~g~avA~~a~~~G~~~~I~~P~~~~~~K~~~~~~~--GA~Vi~~~~~~~~a~~~a~~~a~~~g~~~v~~~--~~p~~i 159 (329)
T PRK08638 84 GNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGY--GAEVVLHGDNFNDTIAKVSEIVEEEGRTFIPPY--DDPKVI 159 (329)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH--CCCCEECCCCHHHHHHHHHHHHHHHCCEEECCC--CCHHHH
T ss_conf 8679999999998398659858898879999999972--875143178648999999999985098852246--783156
Q ss_pred EECCCHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 8054147899999997199516764055674-467899999999973998728899970
Q gi|254781050|r 157 SRSGTLTYEAVFQTSQEGLGQSTAVGIGGDP-VKGTEFIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 157 SqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~-~~G~~~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
.-.+|+++|+..++.+. -..++.+|+-- +.| ..-+|+ +-+|+|++|.+--|
T Consensus 160 ~G~~Ti~~Ei~eq~~~~---D~vvvpvGgGGl~~G--i~~~lk--~~~p~~~vigVepe 211 (329)
T PRK08638 160 AGQGTIGLEILEDLYDV---DTVIVPIGGGGLIAG--IAVALK--SINPTIHIIGVQSE 211 (329)
T ss_pred HHHHHHHHHHHHHHCCC---CEEEEEECCHHHHHH--HHHHHH--HHCCCCEEEEEEEC
T ss_conf 44135999999982469---959994274389999--999999--74999879999879
No 376
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=35.47 E-value=34 Score=15.18 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEE---EEEECC----CCCCCCCEEEE
Q ss_conf 467899999999973998728899970-5872489999999986422675526899---843015----76553220011
Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGF---VAGKTA----PPGRTMGHAGA 259 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~---~~GrtA----p~g~~~gHaGA 259 (300)
++|.+ .+.|+++.+ ...++|++-+- .|... .+..+.++.+. ....|||.- .-|+.. ..|+.+-.+|.
T Consensus 296 ~PG~~-~~~l~~~~~-~g~kGIVleg~G~Gnvp-~~l~~~i~~a~--~~Gi~VV~tSQc~~G~V~~~vY~~Gr~l~~~Gv 370 (421)
T PRK04183 296 YPGMD-PEILDFYVD-KGYKGIVIEGTGLGHVS-TDLIPSIKRAT--DDGVPVVMTSQCLYGRVNMNVYSTGRELLAAGV 370 (421)
T ss_pred CCCCC-HHHHHHHHH-CCCCEEEEEEECCCCCC-HHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 79989-999999974-69878999716589999-89999999999--889989996888978637013366799997885
Q ss_pred ECCCCCC--CHHHHHHHHHHCCCEECCCHHHHHHHHHH
Q ss_conf 2248888--99999999998897578898999999999
Q gi|254781050|r 260 VISGGKG--GAEDKINAMKEAGICIAPSPARIGRSLVE 295 (300)
Q Consensus 260 i~~~~~g--~a~~k~~al~~aGv~v~~s~~el~~~l~~ 295 (300)
|-++.+. +|-.|..++-. .-.+++++-+++.+
T Consensus 371 I~g~DMt~EaA~~KLmwlLg----~~~d~~~ik~~m~~ 404 (421)
T PRK04183 371 IPGEDMLPEVAYVKLMWVLG----NTDDLEEVKELMLT 404 (421)
T ss_pred CCCCCCCHHHHHHHHHHHHC----CCCCHHHHHHHHCC
T ss_conf 76799899999999999966----99999999999707
No 377
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=35.38 E-value=34 Score=15.17 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCEEEEECCHH---HHHHHHHH---HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 63688621204---56788999---985399589980588468889999998401771
Q gi|254781050|r 71 ANASVIYVPPS---GAGDAIIE---SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSS 122 (300)
Q Consensus 71 ~D~avI~VP~~---~v~dai~E---a~~agik~iviiteGip~~d~~~l~~~A~~~g~ 122 (300)
+|-.=+|||.- +.--++|- |.-+|++-++++|---+-.---.++..|+..|+
T Consensus 116 i~~vGlYVPGG~a~ypStvlM~aiPA~vAGV~~Ivv~tPp~~g~i~p~iL~aA~l~Gv 173 (424)
T PRK12447 116 VNSVGCYVPGGKYPLPASAHMTVLTAKVAGVPRIVACTPPFPGEPHPAIVAAMHLAGA 173 (424)
T ss_pred EHEEEEEEECCCCCCHHHHHHHCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
T ss_conf 1346999308987667989971518887399858996599999999899999998098
No 378
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.18 E-value=34 Score=15.15 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCC---EEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 788999985399589980588468889999998401771---89406851013555100020011235778679998054
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSS---RLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~---riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
..-+.+|.++|+..++|. ..|..+..++.+.++++|+ .++-|++.
T Consensus 109 e~F~~~~~~~GvdGlIip--DLP~eE~~~~~~~~~~~gl~~I~lvaPtt~------------------------------ 156 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTSS------------------------------ 156 (263)
T ss_pred HHHHHHHHHCCCCEEECC--CCCHHHHHHHHHHHHHCCCCEEEEECCCCC------------------------------
T ss_conf 999999998499868747--999788899999998558621666478996------------------------------
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
.+-+..+.+..-||-++||.=| +.|.. .....+..++++..++.+ ++||+
T Consensus 157 ---~~Ri~~i~~~a~GFiY~vs~~G--vTG~~------------------------~~~~~~l~~~i~~ik~~t-~~Pv~ 206 (263)
T CHL00200 157 ---KSRIQKIARAAPGCIYLVSTTG--VTGLK------------------------TELDKKLKKLIETIKKMT-NKPII 206 (263)
T ss_pred ---HHHHHHHHHHCCCCEEEEECCC--CCCCC------------------------CCCHHHHHHHHHHHHHHC-CCCEE
T ss_conf ---9999999972898089853365--56875------------------------445187999999999736-99848
Q ss_pred EEEEEECCCCCCCC---CEEEEECCCCCCCHHHHHHHHHHCC-CEECCCHHHHHHHHHHHHHC
Q ss_conf 99843015765532---2001122488889999999999889-75788989999999999843
Q gi|254781050|r 241 GFVAGKTAPPGRTM---GHAGAVISGGKGGAEDKINAMKEAG-ICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 241 a~~~GrtAp~g~~~---gHaGAi~~~~~g~a~~k~~al~~aG-v~v~~s~~el~~~l~~~l~~ 299 (300)
+=..=++...-+.+ +--|+++ ||+-.+ .+.+.. -...+...++.+.||+.+.|
T Consensus 207 vGFGIs~~e~v~~~~~~~aDGvIV----GSaiV~--~i~~~~~~~~~~~i~~f~~~lk~ai~s 263 (263)
T CHL00200 207 LGFGISTSEQIKQIKGWNINGIVI----GSACVQ--ILLGSSPEKGLDQLSEFCKVAKKSIIS 263 (263)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEE----CHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 735879999999997459999998----789999--998559076899999999999999739
No 379
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=34.66 E-value=35 Score=15.10 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9999997199516764055674467899999999973998
Q gi|254781050|r 166 AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEA 205 (300)
Q Consensus 166 ~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~ 205 (300)
.+..+.+.|+-+ .+||+|+ . + .+-|+.++-+|.
T Consensus 122 ~a~~lr~~Gi~v-~~VGig~-~----~-~~~L~~iAs~p~ 154 (164)
T cd01472 122 PAVELKQAGIEV-FAVGVKN-A----D-EEELKQIASDPK 154 (164)
T ss_pred HHHHHHHCCCEE-EEEECCC-C----C-HHHHHHHHCCCC
T ss_conf 999999889889-9997884-7----9-999999967993
No 380
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.41 E-value=35 Score=15.07 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 958998058846888999999840177189406
Q gi|254781050|r 95 IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 95 ik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300)
..+++++|+-+.-..+.++++.|+++++.++=-
T Consensus 47 aDlVI~~td~vsH~~~~~vK~~akk~~~p~v~~ 79 (96)
T pfam10087 47 ADLVIVFTDCVSHDAMWRVKEEAKKRGIPVVFS 79 (96)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 888999717668799999999999849978997
No 381
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=34.37 E-value=35 Score=15.07 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC---CCCEEE-EECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 739998888437799999998626---981899-7658998868727745775314078503578863688621204567
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYC---QTQVVG-GIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~---gt~iva-gV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
.++.+.|. |.-|+--..-.+.-+ ..++.. .-++.+ -.....+..++-++.+..|++++ .|+-++.|.|+.+.
T Consensus 4 m~I~fIG~-GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~-~~~~l~~~~~v~~~~~~~~~~~~--~diI~LaVKP~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQKYGVKGTHNKKELLTD--ANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-HHHHHHHHHCCEEECCHHHHHHH--CCEEEEECCHHHHH
T ss_conf 88999876-8999999999997879997579997898499-99999997196663777999844--99999952789999
Q ss_pred HHHHHHHHC--CCCEEEEECCCCCHHHHHHHH
Q ss_conf 889999853--995899805884688899999
Q gi|254781050|r 85 DAIIESIEA--EIPLIVCITEGIPVLDMVRVK 114 (300)
Q Consensus 85 dai~Ea~~a--gik~iviiteGip~~d~~~l~ 114 (300)
+++.+..+. .=+.+|-+..|++..+..++.
T Consensus 80 ~v~~~i~~~~~~~~~iISi~AGi~~~~l~~~l 111 (279)
T PRK07679 80 EALTPFKEYIHNNVLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHC
T ss_conf 99999875458992999974788899999752
No 382
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014187 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. The gene neighbourhood of members of this family is not conserved and it appears that no members are characterised. Sequence alignments reveal 6 invariant cysteine residues and one invariant histidine..
Probab=34.36 E-value=35 Score=15.07 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCHHHHCCCC--CCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 4078503578--86368862120456788999985399
Q gi|254781050|r 60 TTVAEAKERT--AANASVIYVPPSGAGDAIIESIEAEI 95 (300)
Q Consensus 60 ~sv~ea~~~~--~~D~avI~VP~~~v~dai~Ea~~agi 95 (300)
.|+.+|.+.+ +.|.+++|.|.-......+|++|+|=
T Consensus 216 as~~~a~d~PP~Pld~ailfaP~G~lv~~al~ald~GG 253 (334)
T TIGR02822 216 ASAQGAADRPPEPLDAAILFAPAGELVPPALEALDRGG 253 (334)
T ss_pred HHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 22113567878741123100265504799999740588
No 383
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=34.31 E-value=35 Score=15.06 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 407850357886368862120456788999985399589980588468
Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300)
Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300)
..+.+|.+ -+.+-++|+|.+++-+....-..+++...++ |||.
T Consensus 21 ~l~~~A~~---~~~aaVcV~p~~v~~a~~~L~~s~v~v~tvi--gFP~ 63 (203)
T cd00959 21 KLCDEAKE---YGFAAVCVNPCFVPLAREALKGSGVKVCTVI--GFPL 63 (203)
T ss_pred HHHHHHHH---HCCEEEEECHHHHHHHHHHHCCCCCCEEEEE--CCCC
T ss_conf 99999987---5983999899999999998448997267771--6899
No 384
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=34.30 E-value=35 Score=15.06 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHH----HHHHHHHHCCCCEEEEC
Q ss_conf 56788999985399589980588468889----99999840177189406
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDM----VRVKARLEKSSSRLIGP 127 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~----~~l~~~A~~~g~riiGP 127 (300)
...+.+.++++.|++.+.+=.-..+..+. .++++++++++.+++==
T Consensus 13 ~~~~~~~~~l~~Gv~~vqlR~K~~~~~~~~~~a~~l~~i~~~~~~~liin 62 (180)
T pfam02581 13 DLLEVVEEALKGGVTIVQLREKDLDDRELLELAERLRALCRKYGVPLIIN 62 (180)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 79999999998699999987898799999999999999999829979987
No 385
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC; InterPro: IPR001757 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the several classes of P-type ATPases, including those that transport K^+ (3.6.3.12 from EC), Mg^2+ (3.6.3.2 from EC), Cd^2+ (3.6.3.3 from EC), Cu ^2+ (3.6.3.4 from EC), Zn^2+ (3.6.3.5 from EC), Na^+ (3.6.3.7 from EC), Ca^2+ (3.6.3.8 from EC), Na^+/K^+ (3.6.3.9 from EC), and H^+/K^+ (3.6.3.10 from EC). These P-ATPases are found in both prokaryotes and eukaryotes. More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005524 ATP binding, 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006810 transport, 0016020 membrane.
Probab=34.16 E-value=35 Score=15.05 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=9.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 220011224888899999999998897
Q gi|254781050|r 254 MGHAGAVISGGKGGAEDKINAMKEAGI 280 (300)
Q Consensus 254 ~gHaGAi~~~~~g~a~~k~~al~~aGv 280 (300)
.||.=++++.|.-++ .||++|-|
T Consensus 384 ~g~~V~m~GDG~ND~----~AL~~AdV 406 (478)
T TIGR01494 384 RGAIVAMIGDGANDA----PALKAADV 406 (478)
T ss_pred CCCEEEEEECCCCCH----HHHHHCCC
T ss_conf 699899980883327----88962165
No 386
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=33.96 E-value=36 Score=15.03 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC-----CCH-------------------HHHHHHHHHHHCCCCEEEEC
Q ss_conf 56788999985399589980588-----468-------------------88999999840177189406
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEG-----IPV-------------------LDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteG-----ip~-------------------~d~~~l~~~A~~~g~riiGP 127 (300)
-+.+.+.||.++|.+ +|++.|- +|. .....|.+.|+++++-++.+
T Consensus 26 k~~~~i~~Aa~~GA~-LvvfPE~~~tgy~p~~~~~~~~~~~~~~e~~~~gp~~~~l~~~A~~~~i~v~~G 94 (302)
T cd07569 26 RLIALLEEAASRGAQ-LVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLG 94 (302)
T ss_pred HHHHHHHHHHHCCCE-EEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999988099-998789976688744345899999976643189989999999999849899965
No 387
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=33.81 E-value=36 Score=15.01 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=15.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 9980588468889999998401771894068
Q gi|254781050|r 98 IVCITEGIPVLDMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 98 iviiteGip~~d~~~l~~~A~~~g~riiGPN 128 (300)
=|||.-+|. .+.++++..-+...+|++-.+
T Consensus 138 EvIIAP~f~-~eAleiL~~KKn~~l~il~~~ 167 (391)
T PRK07106 138 DGIIAPGYT-PEALEILKNKRKGTYNIIKID 167 (391)
T ss_pred HHHCCCCCC-HHHHHHHHHHCCCCEEEEECC
T ss_conf 641057889-899999975112566887547
No 388
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=33.62 E-value=36 Score=14.99 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=75.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 97399988884377999999986269818997658998868727745775314078503578863688621204567889
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300)
.+||.|.|.||--|.--.+.....-.-.++. +++.+-. -+ +--.|..+ ++|+...+.|-....+.+
T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~-i~~~~~k---------~~--~~~~~~~~--~~DvvFlalPh~~s~~~v 67 (314)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLS-IPEAKRK---------DP--AARRELLN--AADIAILCLPDDAAREAV 67 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEEE-ECCCCCC---------CH--HHHHHHHH--CCCEEEECCCCHHHHHHH
T ss_conf 8269998998856999999997599829999-6711255---------75--56787750--699999999977899999
Q ss_pred HHHHHCCCCEEEEECC----------CCCHHH--HHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECC---CCCCCC-
Q ss_conf 9998539958998058----------846888--999999840177189406851013555100020011---235778-
Q gi|254781050|r 88 IESIEAEIPLIVCITE----------GIPVLD--MVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPG---SIFRKG- 151 (300)
Q Consensus 88 ~Ea~~agik~iviite----------Gip~~d--~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~---~~~~pG- 151 (300)
.+..+.|+| +|=.+. |+||.- .++-.+-| -+|=-|.|-=. ..-+++.|- .+..+.
T Consensus 68 ~~~~~~g~k-VIDLSaDfRl~~~wvYGlPEl~~~~r~~I~~a----~~IAnPGCyaT----a~iL~L~PL~~~gli~~~~ 138 (314)
T PRK11863 68 ALIDNPATR-VIDASTAHRTAPGWVYGFPELAPGQRERIAAA----RRVANPGCYPT----GAIALLRPLVDAGLLPADY 138 (314)
T ss_pred HHHHHCCCE-EEECCCCCCCCCCCEEECCCCCHHHHHHHHHC----CEEECCCCHHH----HHHHHHHHHHHCCCCCCCC
T ss_conf 988627988-99898544579997733650687789998629----86327982899----9999999999768878888
Q ss_pred CEEEEEECCC
Q ss_conf 6799980541
Q gi|254781050|r 152 SVGILSRSGT 161 (300)
Q Consensus 152 ~VgivSqSG~ 161 (300)
+|-+.|.||.
T Consensus 139 ~i~i~a~SG~ 148 (314)
T PRK11863 139 PVSINAVSGY 148 (314)
T ss_pred CEEEEEECCC
T ss_conf 4699841025
No 389
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=33.49 E-value=36 Score=14.98 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=94.3
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 997658998868727745775314078503578863688621204----5678899998539958998058846888999
Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGIPVLDMVR 112 (300)
Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGip~~d~~~ 112 (300)
++.+.|.-+...+ ...+.+.+.++.++-+.++.++..... .....+...++.++..+++....- .. ..
T Consensus 2 IG~i~p~~~~~~~-----~~~~~~g~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~l~~~~vd~ii~~~~~~-~~--~~ 73 (269)
T cd01391 2 IGVLLPLSGSAPF-----GAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSS-SA--LA 73 (269)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CH--HH
T ss_conf 8999638878869-----9999999999999819976999984999999999999999974999999468874-44--89
Q ss_pred HHHHHHCCCCEEEECCCCEE----------ECCCCHHCCEECC-CC--CCCCCEEEEEECCC-HHHHH----HHHHHHCC
Q ss_conf 99984017718940685101----------3555100020011-23--57786799980541-47899----99999719
Q gi|254781050|r 113 VKARLEKSSSRLIGPNCPGI----------LTPDSCKIGIMPG-SI--FRKGSVGILSRSGT-LTYEA----VFQTSQEG 174 (300)
Q Consensus 113 l~~~A~~~g~riiGPNc~Gi----------i~p~~~~lgi~p~-~~--~~pG~VgivSqSG~-l~~e~----~~~~~~~g 174 (300)
+...+++.++.+|-+|+.-- +.++....+..-. .+ ....+|+++..+.. .+... ...+.+.|
T Consensus 74 ~~~~~~~~~iPvv~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~r~~g~~~~~~~~g 153 (269)
T cd01391 74 VVELAAAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAG 153 (269)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999976981999678878777888658998588999999986898718961699737985779999999999999869
Q ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 95167640556744678999999999739987288999705872489999999986422675
Q gi|254781050|r 175 LGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRK 236 (300)
Q Consensus 175 ~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~ 236 (300)
+=.. .+-.+.. ....++....+++.+.+..++|+.. ++ ..+...+++.++.+++
T Consensus 154 ~~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~~~ai~~~-----~d-~~a~g~~~a~~~~G~~ 207 (269)
T cd01391 154 IEVV-AIEYGDL-DTEKGFQALLQLLKAAPKPDAIFAC-----ND-EMAAGALKAAREAGLT 207 (269)
T ss_pred CCEE-EEEEECC-CCCHHHHHHHHHHHHCCCCEEEEEC-----CH-HHHHHHHHHHHHCCCC
T ss_conf 9867-9997134-3214899999998618997399988-----88-9999999999986989
No 390
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=33.44 E-value=36 Score=14.97 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCEEEEECC---HHHHHHHHHHHH---HCCCCEEEEECC
Q ss_conf 636886212---045678899998---539958998058
Q gi|254781050|r 71 ANASVIYVP---PSGAGDAIIESI---EAEIPLIVCITE 103 (300)
Q Consensus 71 ~D~avI~VP---~~~v~dai~Ea~---~agik~iviite 103 (300)
+|-.=++|| +++.--++|-++ -+|++-++++|-
T Consensus 93 i~~vG~YVPGG~a~ypStvLM~aiPAkvAGV~~Ivv~tP 131 (390)
T cd06572 93 IERVGLYVPGGTAPYPSTVLMLAIPAKVAGVKEIVVVTP 131 (390)
T ss_pred HHHEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 577058725887667189998310176548984899868
No 391
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.79 E-value=37 Score=14.91 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECC----CCCHH----------------HHHHHHHHHHCCCCEEEEC
Q ss_conf 5678899998539958998058----84688----------------8999999840177189406
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITE----GIPVL----------------DMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviite----Gip~~----------------d~~~l~~~A~~~g~riiGP 127 (300)
-+.+.+.||.+.|.. +|++.| |++.. ...++.++|+++++.+++.
T Consensus 20 k~~~~i~~A~~~ga~-lvvfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~g 84 (268)
T cd07580 20 RSIELIREAADAGAN-LVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAAELGLYIVAG 84 (268)
T ss_pred HHHHHHHHHHHCCCC-EEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEE
T ss_conf 999999999988891-99988884116984688999998654279889999999999729499983
No 392
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.65 E-value=38 Score=14.89 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC--EECCCCC--CCC------C--EEEEEECCCHHHHHH----H
Q ss_conf 4688899999984017718940685101355510002--0011235--778------6--799980541478999----9
Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG--IMPGSIF--RKG------S--VGILSRSGTLTYEAV----F 168 (300)
Q Consensus 105 ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg--i~p~~~~--~pG------~--VgivSqSG~l~~e~~----~ 168 (300)
....|.++|+++|+++|++||- =|=.|+.+..- ..|.... .+. . .+.+.-+---+|+++ +
T Consensus 72 YT~~d~~eiv~yA~~rgI~ViP----EID~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~ 147 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVP----EIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFR 147 (329)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7899999999999975998976----236611689999868544577899875522377774327897879999999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCH
Q ss_conf 9997199516764055674467899
Q gi|254781050|r 169 QTSQEGLGQSTAVGIGGDPVKGTEF 193 (300)
Q Consensus 169 ~~~~~g~G~S~~VsiG~D~~~G~~~ 193 (300)
.+.+ +=-+..+.+|||=+..+..
T Consensus 148 e~~~--~fp~~~iHiGgDE~~~~~~ 170 (329)
T cd06568 148 ELAA--LTPGPYIHIGGDEAHSTPH 170 (329)
T ss_pred HHHH--CCCCCEEEECCCCCCCCCH
T ss_conf 9996--6899869977525576778
No 393
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.64 E-value=38 Score=14.89 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=6.7
Q ss_pred EEEEECCCHHHHHHHHH
Q ss_conf 99980541478999999
Q gi|254781050|r 154 GILSRSGTLTYEAVFQT 170 (300)
Q Consensus 154 givSqSG~l~~e~~~~~ 170 (300)
-.++.||.-+.++..++
T Consensus 44 ~n~~~~G~tt~~~~~~l 60 (191)
T cd01836 44 RLFAKTGATSADLLRQL 60 (191)
T ss_pred EEEEECCCCHHHHHHHH
T ss_conf 98430485168798650
No 394
>PTZ00067 40S ribosomal S23; Provisional
Probab=32.62 E-value=21 Score=16.53 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=12.2
Q ss_pred CCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 86368862120456788999985
Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIE 92 (300)
Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~ 92 (300)
++-+-.+-+-|..--.|+..|..
T Consensus 49 GIvlekv~veaKqPNSAiRKcvr 71 (143)
T PTZ00067 49 GIVVEKIGVEAKQPNSAVRKCVR 71 (143)
T ss_pred EEEEEEEEEECCCCCHHHHEEEE
T ss_conf 27899988502588601215899
No 395
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=32.01 E-value=38 Score=14.82 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 97399988884377999999986269---818997658998868727745775314078503578863688621204567
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQ---TQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~g---t~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
+.|+.+.|. |+-|+--..-.++.+- .+++. ..+.+......-+..++.++.+..|+.+. .|+-+++|.|+...
T Consensus 2 ~kkI~fIG~-GnMg~Aii~Gl~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~Dii~LaVKP~~~~ 77 (272)
T PRK12491 2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIIC-SDLNVSNLKNASDKYGITITTNNNEVANS--ADILILSIKPDLYS 77 (272)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-ECCCHHHHHHHHHHCCCEEECCHHHHHHH--CCEEEEEECHHHHH
T ss_conf 986999856-799999999999788989676999-69799999999997197886687999731--99999995778999
Q ss_pred HHHHHHHH--CCCCEEEEECCCCCHHHHHHH
Q ss_conf 88999985--399589980588468889999
Q gi|254781050|r 85 DAIIESIE--AEIPLIVCITEGIPVLDMVRV 113 (300)
Q Consensus 85 dai~Ea~~--agik~iviiteGip~~d~~~l 113 (300)
++..|... ..=+.+|-|..|++..+..+.
T Consensus 78 ~vl~~l~~~~~~~~lviSi~AGi~i~~l~~~ 108 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENE 108 (272)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 9999986552699189998489998999998
No 396
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=31.94 E-value=39 Score=14.82 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 43779999999862698
Q gi|254781050|r 18 GKAGTFHTEQAILYCQT 34 (300)
Q Consensus 18 g~~g~~~~~~~~~y~gt 34 (300)
|.-|-....+.++-+|+
T Consensus 194 G~wGEv~Le~ILe~~gl 210 (448)
T COG1322 194 GNWGEVQLERILEDSGL 210 (448)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 61899999999997275
No 397
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=31.87 E-value=39 Score=14.81 Aligned_cols=147 Identities=18% Similarity=0.334 Sum_probs=71.4
Q ss_pred HHHHHHCCCCEE----EEECCCCCH----HHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCC---CCC-----
Q ss_conf 999985399589----980588468----8899999984017718940685101355510002001123---577-----
Q gi|254781050|r 87 IIESIEAEIPLI----VCITEGIPV----LDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSI---FRK----- 150 (300)
Q Consensus 87 i~Ea~~agik~i----viiteGip~----~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~---~~p----- 150 (300)
+.+|++.+-+.+ .|||-|.|- +-.+++-++.|+.|.. |-+.++++ |+.++|..+..+ .+.
T Consensus 3 V~~Al~~~~PvVALESTIitHGlP~P~N~~~a~~~e~~vr~~Gav---PAtiai~~-G~~~vGl~~~el~~la~~~~~~~ 78 (293)
T pfam04227 3 VREALAAGKPVVALESTIITHGMPYPQNVETAREVEQIVRENGAV---PATIAIID-GRIKVGLSDEELERLAQAGKDVA 78 (293)
T ss_pred HHHHHHCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC---CEEEEEEC-CEEEECCCHHHHHHHHHCCCCCC
T ss_conf 689987599889974545546899835899999999999977996---21689998-98774699999999972476654
Q ss_pred ----CCEEEE---EECCCHHHH-HHHHHHHCCCCEEEEEECCC---CCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHH
Q ss_conf ----867999---805414789-99999971995167640556---7446789999999997399872889997058724
Q gi|254781050|r 151 ----GSVGIL---SRSGTLTYE-AVFQTSQEGLGQSTAVGIGG---DPVKGTEFIDVLELFLADEATESIVMVGEIGGSA 219 (300)
Q Consensus 151 ----G~Vgiv---SqSG~l~~e-~~~~~~~~g~G~S~~VsiG~---D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~ 219 (300)
-.+++. -+||+.|-. -+..+...|+-+-..=|+|| +.-...|...=|..| -+|.++|+.. |=.+
T Consensus 79 K~S~RDl~~~~a~~~~GaTTVsaTm~iA~~aGI~VFaTGGIGGVHrg~~~t~DiSaDL~eL---~~tpv~VVca--G~Ks 153 (293)
T pfam04227 79 KVSRRDLPYVVATGKTGATTVAATMILAHLAGIKVFATGGIGGVHRGAEESFDISADLTEL---ARTPVAVVCA--GAKS 153 (293)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH---HCCCEEEEEC--CCHH
T ss_conf 3553027999815876521099999999986980897467451257864563214347888---1597599942--6076
Q ss_pred HH---HHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 89---99999998642267552689984301
Q gi|254781050|r 220 EE---EAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 220 E~---~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300)
-. +-.||++. ..=||+.|.....
T Consensus 154 ILDi~~TlE~LET-----~GV~V~gy~td~f 179 (293)
T pfam04227 154 ILDIPKTLEYLET-----QGVPVIGYGTDEF 179 (293)
T ss_pred HHCCHHHHHHHHH-----CCCEEEEECCCCC
T ss_conf 5054468999997-----5943897458765
No 398
>PRK04211 rps12P 30S ribosomal protein S12P; Reviewed
Probab=31.87 E-value=23 Score=16.30 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=7.5
Q ss_pred CCEEEEECCHHHHHHHHHHHH
Q ss_conf 636886212045678899998
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESI 91 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~ 91 (300)
+-+.-+-|-+..--.|+..|.
T Consensus 52 IVlEKvgvEakqPnSa~RKcv 72 (146)
T PRK04211 52 IVLEKVGVEAKQPNSAIRKCV 72 (146)
T ss_pred EEEEEEEEECCCCCHHHHHEE
T ss_conf 699999861259876541167
No 399
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.75 E-value=39 Score=14.80 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHH-HCCCCCCEEEEEEECC
Q ss_conf 4678999999999-7399872889997058
Q gi|254781050|r 188 VKGTEFIDVLELF-LADEATESIVMVGEIG 216 (300)
Q Consensus 188 ~~G~~~~d~L~~~-~~Dp~T~~Ivl~gEiG 216 (300)
-+|++|+..|+.+ .+||+ |+|+|||-
T Consensus 311 k~gltfa~~LRa~LRqDPD---vImVGEIR 337 (500)
T COG2804 311 KIGLTFARALRAILRQDPD---VIMVGEIR 337 (500)
T ss_pred CCCCCHHHHHHHHHCCCCC---EEEEECCC
T ss_conf 3599789999998665998---59983557
No 400
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=31.72 E-value=32 Score=15.30 Aligned_cols=121 Identities=16% Similarity=0.189 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEEEECCCC-------CHHHHHHHHHHHHCCCCE----------EEECCCCEEECCCC--
Q ss_conf 12045678899998539-95899805884-------688899999984017718----------94068510135551--
Q gi|254781050|r 78 VPPSGAGDAIIESIEAE-IPLIVCITEGI-------PVLDMVRVKARLEKSSSR----------LIGPNCPGILTPDS-- 137 (300)
Q Consensus 78 VP~~~v~dai~Ea~~ag-ik~iviiteGi-------p~~d~~~l~~~A~~~g~r----------iiGPNc~Gii~p~~-- 137 (300)
+-+.--....+|+.+.| -+..+|||+|| +..+ +|+++|++++.. |+|-|--|+++.-.
T Consensus 149 ~dm~DL~~~l~e~~~~Gqy~~~l~vTDGVFSMDGdvApLp--~iVE~Ae~Yda~~yVDDAHGsGVlGe~GrGtV~HFGL~ 226 (392)
T TIGR01825 149 VDMDDLERVLRENVEEGQYKKKLIVTDGVFSMDGDVAPLP--EIVELAEKYDALVYVDDAHGSGVLGEKGRGTVKHFGLE 226 (392)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCC--HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCC
T ss_conf 9845899999716033754436899665042567878873--23346324595799863346644477887135303754
Q ss_pred -HHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -0002001123577867999805414789999999719--95167640556744678999999999739987
Q gi|254781050|r 138 -CKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEG--LGQSTAVGIGGDPVKGTEFIDVLELFLADEAT 206 (300)
Q Consensus 138 -~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g--~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T 206 (300)
.++-|.=+.+-| -+|+|-==-+-.-++.+||.+++ +=||+...-+- .+ -..+.++.+.+||+-
T Consensus 227 y~~v~~qvGTLSK--A~GvvGGY~AG~~~lidyL~~~aRPFLFSta~~Pa~---~~-A~~~Av~~l~~~~~l 292 (392)
T TIGR01825 227 YDKVDIQVGTLSK--AIGVVGGYVAGSKELIDYLKARARPFLFSTALPPAV---VA-ALIEAVDVLQESPEL 292 (392)
T ss_pred CCCEEEEECCHHH--HHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHH---HH-HHHHHHHHHCCCCCH
T ss_conf 1646788555223--222566423488899999986289860125788078---99-999999987079314
No 401
>PRK00877 hisD histidinol dehydrogenase; Reviewed
Probab=31.64 E-value=39 Score=14.79 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCEEEEECC---HHHHHHHHHHHH---HCCCCEEEEECC
Q ss_conf 636886212---045678899998---539958998058
Q gi|254781050|r 71 ANASVIYVP---PSGAGDAIIESI---EAEIPLIVCITE 103 (300)
Q Consensus 71 ~D~avI~VP---~~~v~dai~Ea~---~agik~iviite 103 (300)
+|-.=+||| +++.--++|-++ -|||+.++++|-
T Consensus 122 i~~vG~YVPGG~a~~pStvlM~~iPA~vAGV~~Iv~~tP 160 (428)
T PRK00877 122 IERVGLYVPGGKAAYPSSVLMNAIPAKVAGVKEIVMVTP 160 (428)
T ss_pred HHHCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 567057556988777089997301187639981799868
No 402
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.62 E-value=39 Score=14.78 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCCCHHHHCCCCCCCEEEEE---CCH---HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 31407850357886368862---120---456788999985399589980588468889999998401771894
Q gi|254781050|r 58 VFTTVAEAKERTAANASVIY---VPP---SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI~---VP~---~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+|+.+++..++ .++-+++ .-+ .....-+.+|.++|+..+++. ..|.....++.+.++++|+.+|
T Consensus 73 ~f~~~~~~r~~--~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIip--DLP~eE~~~~~~~~~~~gi~~I 142 (256)
T PRK13111 73 VLELLREIRAK--PTIPIVLMTYYNPIFQYGVEAFAADAAEAGVDGLIIP--DLPPEEAEEFRAAAKKHGIDLI 142 (256)
T ss_pred HHHHHHHHHCC--CCCCEEEEEECCHHHHHCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999998606--8998899850308987099999999997599779816--9997888999999997598089
No 403
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=31.59 E-value=39 Score=14.78 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=19.5
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 636886212045678899998539958998058846888999999840177189
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300)
.|+-+..--|..- +.+..++|...+.+-.|-.+ +..++.+..|+.|++.
T Consensus 60 ~DvHLMv~~P~~~---i~~~~~~g~d~i~~H~E~~~--~~~~~i~~ik~~g~k~ 108 (201)
T pfam00834 60 LDVHLMVEEPDRI---IPDFAEAGADIISFHAEASD--HPHRTIQLIKEAGAKA 108 (201)
T ss_pred EEEEEEEECHHHH---HHHHHHCCCCEEEECHHHHH--CHHHHHHHHHHCCCEE
T ss_conf 3899998377663---99998739988997544413--7999999998649726
No 404
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.58 E-value=39 Score=14.78 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred EEEECCCCCCE-EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH---HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 99765899886-872774577531407850357886368862120---45678899998539958998058846888999
Q gi|254781050|r 37 VGGIHPKKGST-YWTGGNVNVPVFTTVAEAKERTAANASVIYVPP---SGAGDAIIESIEAEIPLIVCITEGIPVLDMVR 112 (300)
Q Consensus 37 vagV~Pgkgg~-~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~---~~v~dai~Ea~~agik~iviiteGip~~d~~~ 112 (300)
++.|+++.-|. +|. .+..-+++|.++.++++-++.-+. ..=.+.+.+++..++..+++-.-. ......
T Consensus 2 i~~v~~~~~~npf~~------~v~~G~~~aA~~~Gv~v~~~~~~~~d~~~Q~~~i~~~i~~~vDaIii~p~~--~~~~~~ 73 (271)
T cd06312 2 IAFVTHGPAGDPFWT------VVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD--PDALDP 73 (271)
T ss_pred EEEEECCCCCCHHHH------HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCHHHH
T ss_conf 899927999983899------999999999999699899996898999999999999997599989993788--300269
Q ss_pred HHHHHHCCCCEEEECCC
Q ss_conf 99984017718940685
Q gi|254781050|r 113 VKARLEKSSSRLIGPNC 129 (300)
Q Consensus 113 l~~~A~~~g~riiGPNc 129 (300)
.++.|++.|+.++-=|+
T Consensus 74 ~i~~a~~agIpVv~~ds 90 (271)
T cd06312 74 AIKRAVAAGIPVISFNA 90 (271)
T ss_pred HHHHHHHCCCEEEEEEC
T ss_conf 99999965986999947
No 405
>PRK06450 threonine synthase; Validated
Probab=31.37 E-value=39 Score=14.76 Aligned_cols=210 Identities=18% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC--
Q ss_conf 531407850357886368862120456788999985399589980588468889999998401771894068510135--
Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT-- 134 (300)
Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~-- 134 (300)
-.+..|..|.+. +.+.-+..-...+......=|..+|++..|.+.+..|..... ..+.+|-+++-= .|-..
T Consensus 82 g~~~~v~~a~~~-G~~~vv~aSsGN~g~slAayaa~~Gi~~~I~vP~~~~~~K~~----~~~~yGA~vv~v--~g~~dd~ 154 (336)
T PRK06450 82 GSVTLISYLADR-GIKEISEDSSGNAGASIAAYGAAAGIKVKIFVPETASGGKLK----QIEAYGAEVIKV--EGSRDDV 154 (336)
T ss_pred HHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH----HHHHCCCEEEEE--CCCHHHH
T ss_conf 999999999980-988457638519999999999984996899826889999999----999769999997--9989999
Q ss_pred -CCCHHCCEE-CCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC-CCCCCC--CHHHHHHHHHCCCCCCEE
Q ss_conf -551000200-112357786799980541478999999971995167640556-744678--999999999739987288
Q gi|254781050|r 135 -PDSCKIGIM-PGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGG-DPVKGT--EFIDVLELFLADEATESI 209 (300)
Q Consensus 135 -p~~~~lgi~-p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~-D~~~G~--~~~d~L~~~~~Dp~T~~I 209 (300)
-...+.|.. ..+.+.|- ++-=.+|+.||+..++... .--..++.+|+ ..+.|. -|.++++.=.-|+-.+.|
T Consensus 155 ~~~a~~~g~~~~~~~~~P~---~~eG~kTia~EI~eql~~~-~PD~VvvPvG~G~ll~Gi~kgf~el~~~G~i~~~Prii 230 (336)
T PRK06450 155 QKAAENSGYYYASHVLQPE---FRDGIRTLAYEIVRQLNWK-MPDYIFIPVSAGTLLLGVYSGFKHLLESGEIDEMPKIV 230 (336)
T ss_pred HHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 9999862873446565800---3301778999999980889-98779982488626999999999998646554577346
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHH
Q ss_conf 99970587248999999998642267552689984301576553220011224888899999999998897578898999
Q gi|254781050|r 210 VMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARI 289 (300)
Q Consensus 210 vl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el 289 (300)
..--| |..- ..++.. .++..|+.+.-.=+.+|+.....+.+.-.+++++.|-.+.-+-+|+
T Consensus 231 ~Vqae--~~~p-----~~~a~~------------~~~~~~~~~~~tiAd~i~~~~P~~~~~~~~~i~~~G~~v~Vsd~ei 291 (336)
T PRK06450 231 AVQTE--QVSP-----LCAKLN------------GLKYDPPNKVTSIADALVSTNPVLLEEMLEVLREYGDCIVVSDNEI 291 (336)
T ss_pred EECCC--CCCH-----HHHHHH------------CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHH
T ss_conf 62246--6785-----999971------------8988887777641003530688638999999984798899899999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781050|r 290 GRSLVEL 296 (300)
Q Consensus 290 ~~~l~~~ 296 (300)
.+.++.+
T Consensus 292 ~~A~~~L 298 (336)
T PRK06450 292 IEAWKEL 298 (336)
T ss_pred HHHHHHH
T ss_conf 9999999
No 406
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=31.26 E-value=40 Score=14.75 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CCEEECCCCCCCCCCCCHHHH----CCCCCCCEEE-
Q ss_conf 79739998888437799999998626981899765899------886872774577531407850----3578863688-
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK------GSTYWTGGNVNVPVFTTVAEA----KERTAANASV- 75 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk------gg~~~~g~~~~iPvy~sv~ea----~~~~~~D~av- 75 (300)
.+++|++-|++| -|.--++....- |-+=+.-+-+.. |.+++..+ .++ =++-+|+ ..+-++++.+
T Consensus 19 ~~s~VLiiG~~g-lG~EiaKNLvLa-GV~svti~D~~~v~~~DLg~nFfl~~-~di--Gk~Raea~~~~L~eLNp~V~v~ 93 (425)
T cd01493 19 ESAHVCLLNATA-TGTEILKNLVLP-GIGSFTIVDGSKVDEEDLGNNFFLDA-SSL--GKSRAEATCELLQELNPDVNGS 93 (425)
T ss_pred HHCCEEEECCCH-HHHHHHHHHHHC-CCCEEEEEECCCCCHHHCCCCCCCCH-HHC--CCHHHHHHHHHHHHHCCCCCEE
T ss_conf 769399999971-199999872132-89769999599187888576615667-785--8839999999999847868547
Q ss_pred -EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf -6212045678899998539958998058846888999999840177189406851013
Q gi|254781050|r 76 -IYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 76 -I~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
+..++....+--.+-. ..-. +||.|+ .|.++..++-++||++++.+|--+|-|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~f~-vVV~t~-~~~~~~~~in~~cr~~~i~fI~~~~~Gl~ 149 (425)
T cd01493 94 AVEESPEALLDNDPSFF-SQFT-VVIATN-LPESTLLRLADVLWSANIPLLYVRSYGLY 149 (425)
T ss_pred EEECCHHHHHHCCHHHH-CCCC-EEEEEC-CCHHHHHHHHHHHHHHCCCEEEEEEECCE
T ss_conf 87068788642687675-2833-899828-89999999999999869978999824466
No 407
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=31.19 E-value=40 Score=14.74 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 999999719951676405567446789999999997399872889997058724899999999864226755268998
Q gi|254781050|r 166 AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFV 243 (300)
Q Consensus 166 ~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~ 243 (300)
++..+.+ .|+.++.++=|+ ....+++.|.+.+..+.|..--| ..+-|+.....+...||++...
T Consensus 3 la~~L~~--~GV~~vFgipG~-----~~~~l~dal~~~~~~~~v~~~hE-------~~A~~mAdgyar~~g~~v~~~t 66 (154)
T cd06586 3 FAEVLTA--WGVRHVFGYPGD-----EISSLLDALREGDKRIIDTVIHE-------LGAAGAAAGYARAGGPPVVIVT 66 (154)
T ss_pred HHHHHHH--CCCCEEEECCCC-----CHHHHHHHHHHCCCCEEEEECCH-------HHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8999998--799989986870-----37999999986399579912858-------8999999999997499489963
No 408
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=31.01 E-value=40 Score=14.72 Aligned_cols=64 Identities=23% Similarity=0.446 Sum_probs=40.3
Q ss_pred CEEEEECCHHHHHHHHHHHHHC-CCCEEEEEC--CCCCHHHHHHHHHHHHCCCCEEEE--CCCCEEECCC
Q ss_conf 3688621204567889999853-995899805--884688899999984017718940--6851013555
Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEA-EIPLIVCIT--EGIPVLDMVRVKARLEKSSSRLIG--PNCPGILTPD 136 (300)
Q Consensus 72 D~avI~VP~~~v~dai~Ea~~a-gik~iviit--eGip~~d~~~l~~~A~~~g~riiG--PNc~Gii~p~ 136 (300)
|.-+|=.|| ..-|..+...+. .+..++++| .-.+..|.+|....+++.++.++| -|=.++..|+
T Consensus 2 DyLiiD~PP-GTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENMs~~~c~~ 70 (81)
T pfam10609 2 DYLIIDMPP-GTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENMSYFVCPD 70 (81)
T ss_pred CEEEEECCC-CCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 899994899-967899999974885776998098599999999999999984996189997797536899
No 409
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=30.94 E-value=40 Score=14.71 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=15.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 636886212045678899998539958998
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVC 100 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~ivi 100 (300)
+-.|+.........+.+.++-++|+..+-+
T Consensus 15 IspSIL~aD~~~L~~ei~~l~~~g~d~lHi 44 (235)
T PRK08091 15 LSVGILAGQWLALHRYLQQLEALNQPLLHF 44 (235)
T ss_pred EEHHHHHHCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 359987518999999999999779999998
No 410
>PRK08818 prephenate dehydrogenase; Provisional
Probab=30.93 E-value=40 Score=14.71 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=48.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300)
.|-+.|.|+-.|+.-+....+..+..|+ |--|.+.+. -...++..+ .|+-||.||...+.+.+.|
T Consensus 6 iV~iiG~~~~~G~w~a~flr~~~~~~vi-g~dp~~~~s------------~D~~~l~~~--aDIVIisVPI~~T~~vI~E 70 (373)
T PRK08818 6 VVGIVGIAGAYGRWLAQFLRTRMQLEVI-GYDPADPGS------------LDPATLLAR--ADVLVFSAPIRHTAALIER 70 (373)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEE-ECCCCCCCC------------CCHHHHHHC--CCEEEEECCHHHHHHHHHH
T ss_conf 3899626632658999998743661788-548877566------------698898623--8989997780323889988
Q ss_pred HH
Q ss_conf 98
Q gi|254781050|r 90 SI 91 (300)
Q Consensus 90 a~ 91 (300)
-.
T Consensus 71 ~~ 72 (373)
T PRK08818 71 YV 72 (373)
T ss_pred HH
T ss_conf 77
No 411
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=30.82 E-value=40 Score=14.70 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHHHHHCCCCEE-EECCCCEEECCCCHH----CCEEC--CCC--
Q ss_conf 20456788999985399589980588468--88999999840177189-406851013555100----02001--123--
Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPV--LDMVRVKARLEKSSSRL-IGPNCPGILTPDSCK----IGIMP--GSI-- 147 (300)
Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~--~d~~~l~~~A~~~g~ri-iGPNc~Gii~p~~~~----lgi~p--~~~-- 147 (300)
.-......+.|+.+.|++. |++|-|=|. .|..++.+.+++.|+++ +-.|-. .+++...+ .|+.- -.+
T Consensus 48 s~~e~~~~id~l~~~Gv~~-v~~tGGEPllr~D~~ei~~~a~~~G~~~~l~TNG~-lit~~~a~~L~~~gl~~v~vSlDg 125 (375)
T PRK05301 48 STAEWIRVLREARALGVLQ-LHFSGGEPLLRKDLEELVAHARRLGLYTNLITSGV-GLTEARLAALKAAGLDHIQLSFQD 125 (375)
T ss_pred CHHHHHHHHHHHHHCCCCE-EEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC-CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999999869988-99618652456689999999997697589960674-557999999985099889995677
Q ss_pred CCCC-CEEEEEECCCH--HHHHHHHHHHCCCCEE--EEEECCCCCCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 5778-67999805414--7899999997199516--7640556744678999999999739987288
Q gi|254781050|r 148 FRKG-SVGILSRSGTL--TYEAVFQTSQEGLGQS--TAVGIGGDPVKGTEFIDVLELFLADEATESI 209 (300)
Q Consensus 148 ~~pG-~VgivSqSG~l--~~e~~~~~~~~g~G~S--~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~I 209 (300)
..|- +=-+-...|++ ..+.+..+.++|+-++ +.|.--|= .++.+++++. ++-..+.+
T Consensus 126 ~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~----~~l~~i~~la-~~lGv~~~ 187 (375)
T PRK05301 126 SDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNI----DQIPRIIELA-VELGADRL 187 (375)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCH----HHHHHHHHHH-HHCCCCEE
T ss_conf 98778777637886299999999999974981699987230568----8899999999-97299828
No 412
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=30.51 E-value=41 Score=14.67 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE--------------------EEECCCCEEECCCCHHCCEEC-C
Q ss_conf 9999853995899805884688899999984017718--------------------940685101355510002001-1
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR--------------------LIGPNCPGILTPDSCKIGIMP-G 145 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r--------------------iiGPNc~Gii~p~~~~lgi~p-~ 145 (300)
+.||...|...+..|..-.+..+..++.++|++.||- +||=|-=.+-+- ...+.... -
T Consensus 122 I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf-~vdl~~t~~l 200 (254)
T COG0134 122 IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTL-EVDLETTEKL 200 (254)
T ss_pred HHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCHH-EECHHHHHHH
T ss_conf 999998085619999996399999999999997699238997899999999967998899837884021-0068899998
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 23577867999805414789999999719
Q gi|254781050|r 146 SIFRKGSVGILSRSGTLTYEAVFQTSQEG 174 (300)
Q Consensus 146 ~~~~pG~VgivSqSG~l~~e~~~~~~~~g 174 (300)
-...|..+-+||-||=.+.+=+..+...|
T Consensus 201 a~~~p~~~~~IsESGI~~~~dv~~l~~~g 229 (254)
T COG0134 201 APLIPKDVILISESGISTPEDVRRLAKAG 229 (254)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHCC
T ss_conf 84487775899617989999999999748
No 413
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=30.15 E-value=41 Score=14.63 Aligned_cols=54 Identities=20% Similarity=0.425 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 467899999999973998728899970587248999999998642267552689984301
Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300)
++|.+ .+.++++.++ .-+.||+-+==.|+.-.+..++++.+.+ ...|||. +-|+
T Consensus 220 ~pG~~-~~~l~~~~~~-~~~GlVl~~~G~Gn~p~~~~~~l~~a~~--~gi~VV~--~Sq~ 273 (323)
T smart00870 220 YPGMD-AELLDALLDS-GAKGLVLEGTGAGNVPPDLLEALKEALE--RGIPVVR--TSRC 273 (323)
T ss_pred CCCCC-HHHHHHHHHC-CCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCEEEE--ECCC
T ss_conf 89989-9999999857-9988999827899899999999999996--8987999--6368
No 414
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=30.06 E-value=41 Score=14.62 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=41.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 75314078503578863688621204567889999853995899805884------688899999984017718940685
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc 129 (300)
-|.|.+-.....-.+++ .+.+ |...|......|.+++.+-+= +..+..+|.++|+++++.||==.+
T Consensus 112 ~P~y~~y~~~~~~~g~~--~v~~------d~~~~~~~~~~k~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~i~visDEi 183 (357)
T TIGR03539 112 ELAYPTYEVGALLAGAT--PVAA------DDPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDEC 183 (357)
T ss_pred CCCCCCHHHHHHHCCCE--EEEC------CCHHHCCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 88770089999985998--9823------886667977854999899989623208288999998732055589952332
Q ss_pred CE
Q ss_conf 10
Q gi|254781050|r 130 PG 131 (300)
Q Consensus 130 ~G 131 (300)
-.
T Consensus 184 Y~ 185 (357)
T TIGR03539 184 YL 185 (357)
T ss_pred HH
T ss_conf 47
No 415
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=30.01 E-value=41 Score=14.61 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCC--EECCCHHHHHHHHHHHHHC
Q ss_conf 897--5788989999999999843
Q gi|254781050|r 278 AGI--CIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 278 aGv--~v~~s~~el~~~l~~~l~~ 299 (300)
.|+ .++++++||...|.+.+..
T Consensus 495 ~G~~~~~v~~~~eL~~al~~a~~~ 518 (548)
T PRK07449 495 YGLEYHRPETWAELEEALDDALRT 518 (548)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 799399859999999999999838
No 416
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=29.91 E-value=42 Score=14.60 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE
Q ss_conf 999853995899805884688899999984017718940685101
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300)
..|+++| .+|.+|.||+..| +++++|.+.++.++--+---+
T Consensus 128 ~lAL~~~--~AVLvTGGF~~s~--evi~lAne~~lPvlstsYDTF 168 (432)
T COG4109 128 LLALENG--NAVLVTGGFDVSD--EVIKLANEKGLPVLSTSYDTF 168 (432)
T ss_pred HHHHHCC--CEEEEECCCCCCH--HHHHHHCCCCCCEEEECCCCE
T ss_conf 9998649--8599957988658--899764014884487045213
No 417
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=29.84 E-value=42 Score=14.59 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=10.9
Q ss_pred HHHHCCCEEC-CCHHHHHHHHHH
Q ss_conf 9998897578-898999999999
Q gi|254781050|r 274 AMKEAGICIA-PSPARIGRSLVE 295 (300)
Q Consensus 274 al~~aGv~v~-~s~~el~~~l~~ 295 (300)
|-+.|.++.. |++.-+.+.+++
T Consensus 667 AKeAADIVLlDDnf~tIv~aV~e 689 (900)
T PRK10517 667 AREAADIILLEKSLMVLEEGVIE 689 (900)
T ss_pred HHHHCCEEEECCCHHHHHHHHHH
T ss_conf 99842889942974899999999
No 418
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=29.70 E-value=42 Score=14.58 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=53.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE----CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 7973999888843779999999862698189976589988687----277457753140785035788636886212045
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYW----TGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~----~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
.+-||||.|--|||-..--+....-.=.+| -+.||-+|..- ....+++--++.+.+-..+..+|+.||-=..+.
T Consensus 3 ~~MkVLviGsGGREHAia~kl~~S~~v~~v--~~aPGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idLvvvGPE~PL 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSEL--KVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPEDPL 80 (426)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEE--EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 798899989888999999999619898879--998897611234545444338669999999999849999998966888
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 67889999853995
Q gi|254781050|r 83 AGDAIIESIEAEIP 96 (300)
Q Consensus 83 v~dai~Ea~~agik 96 (300)
+...+-..-++|++
T Consensus 81 ~~Gi~D~l~~~gi~ 94 (426)
T PRK13789 81 VAGFADWAAELGIP 94 (426)
T ss_pred HHHHHHHHHHCCCE
T ss_conf 63179998416991
No 419
>PRK13224 consensus
Probab=29.59 E-value=42 Score=14.57 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--C---HHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 86799980541478999999971995167640556744678--9---999999997399872889997058724899999
Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGT--E---FIDVLELFLADEATESIVMVGEIGGSAEEEAAQ 225 (300)
Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~--~---~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~ 225 (300)
=+++++|-|..-. +-..+.+.|+.-..-+-+|+|-+... + +...++.+..+| + +++ |..+.+.
T Consensus 103 ~~laivTn~~~~~--~~~~L~~~gl~~~Fd~iv~~d~v~~~KP~Pe~~l~a~~~l~~~~---~-l~V----GDs~~D~-- 170 (216)
T PRK13224 103 WRLGLCTNKPVGP--TRAILAHFGLAELFDVVIGGDSLPQRKPDPAPLRAAFAALGDEP---V-LYV----GDSEVDA-- 170 (216)
T ss_pred CCEEEEECCCHHH--HHHHHHHCCCHHHCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC---E-EEE----CCCHHHH--
T ss_conf 9668760893477--88899873944324746544668999999999999997379999---8-997----5988789--
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE-ECCCHHHHHHHHHHHHH
Q ss_conf 99986422675526899843015765532200112248888999999999988975-78898999999999984
Q gi|254781050|r 226 FLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGIC-IAPSPARIGRSLVELLG 298 (300)
Q Consensus 226 fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~-v~~s~~el~~~l~~~l~ 298 (300)
+++++. .=|+|++.-|-+. + .+++++-. +.++++||+++++++|+
T Consensus 171 --~aA~~A--Gi~~i~v~~Gy~~-------------------~-----~~~~~~~~~~i~~~~el~~~l~~l~~ 216 (216)
T PRK13224 171 --ETAENA--GVPFLLFTEGYRK-------------------A-----PVHELPHHGAFDDHAELPDLVARLLA 216 (216)
T ss_pred --HHHHHH--CCCEEEECCCCCC-------------------C-----CHHHCCCCCHHCCHHHHHHHHHHHHC
T ss_conf --999994--9988997779799-------------------8-----96773846261799989999999849
No 420
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=29.59 E-value=42 Score=14.57 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=34.8
Q ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCEEEECCCCE
Q ss_conf 862120456788999985399589980588------468889999998401771894068510
Q gi|254781050|r 75 VIYVPPSGAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSRLIGPNCPG 131 (300)
Q Consensus 75 vI~VP~~~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~riiGPNc~G 131 (300)
++++|...-.+-..+..+..+|.+++.+-+ ++..+.++|.++|+++++.||==.+-.
T Consensus 157 ~~~~~~~~e~~f~~~~~~~ktk~iilnsP~NPTG~V~s~eel~~i~~~a~~~~i~iisDEiY~ 219 (409)
T PRK07590 157 IVYLPCTAENNFIPELPSEKVDIIYLCFPNNPTGTVATKEQLKAWVDYAKANGSLILFDAAYE 219 (409)
T ss_pred EEECCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 246558834354743565460299984898995655799999999999987497899707620
No 421
>KOG2742 consensus
Probab=29.58 E-value=33 Score=15.23 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCCCC-CHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 775314-078503578863688621204567889999853995899805884688899999
Q gi|254781050|r 55 NVPVFT-TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVK 114 (300)
Q Consensus 55 ~iPvy~-sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~ 114 (300)
.++.|. ++.|..-..++|+-.|..||++-.+.+..+.-.|-..+ ..--++..|+.++.
T Consensus 47 ~v~~~t~~~deiLl~~~vdlv~i~lpp~~~~eI~~kal~~Gk~Vv--cek~a~~~d~~k~~ 105 (367)
T KOG2742 47 NVRKYTSRLDEILLDQDVDLVCISLPPPLHAEIVVKALGIGKHVV--CEKPATNLDAAKMV 105 (367)
T ss_pred CHHHCCCCCHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCCEEE--ECCCCCCHHHHHHH
T ss_conf 211105530054436774436751687401045640235774078--52677542245667
No 422
>PTZ00159 60S ribosomal protein L32; Provisional
Probab=29.50 E-value=42 Score=14.56 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 95899805884688899999984017718940685
Q gi|254781050|r 95 IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 95 ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300)
-..++.|+..+.-+--.++++.|++.+++|+-||-
T Consensus 92 ~~~aa~Ia~~Vg~kkr~~IverA~el~ikV~Np~a 126 (134)
T PTZ00159 92 RTYAGEIAHNVSARKRKAIVRRAAELNVRLTNGKA 126 (134)
T ss_pred HHHEEEEECCCCCCCHHHHHHHHHHHCCEECCCCC
T ss_conf 02558862466663279999999985874048875
No 423
>PRK13131 consensus
Probab=29.45 E-value=42 Score=14.55 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCCCC-CCC-CE--EEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf 99999986422675526899843015765-532-20--011224888899999999998897578898999999999984
Q gi|254781050|r 223 AAQFLKDEAKRGRKKPIVGFVAGKTAPPG-RTM-GH--AGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 223 aa~fi~~~~~~~~~KPVva~~~GrtAp~g-~~~-gH--aGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
..++++..++.+ .+||++=..=++ |.. +.+ ++ -|+|+ ||+-.+ .+++. .++.+.+.+.+++..+
T Consensus 186 ~~~~i~~ik~~t-~~Pv~vGFGIs~-~e~v~~~~~~gaDGvIV----GSaiV~--~I~~~----~~~~~~~~~~i~~fv~ 253 (257)
T PRK13131 186 ASAIIKTLKTFS-PTPALLGFGISK-KEHITNAKGMGADGVIC----GSALVK--IIEEN----LNNENAMLEKIKGFIG 253 (257)
T ss_pred HHHHHHHHHHCC-CCCEEEECCCCC-HHHHHHHHHCCCCEEEE----CHHHHH--HHHHC----CCCHHHHHHHHHHHHH
T ss_conf 999999999668-998799805798-89999998559999998----789999--99872----7888999999999999
Q ss_pred CC
Q ss_conf 39
Q gi|254781050|r 299 SL 300 (300)
Q Consensus 299 ~l 300 (300)
+|
T Consensus 254 ~l 255 (257)
T PRK13131 254 GM 255 (257)
T ss_pred HH
T ss_conf 86
No 424
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=29.44 E-value=42 Score=14.55 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCCC-EEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC---CCCCEEEEECCCCCCCH
Q ss_conf 999999997399872-88999705872489999999986422675526899843015765---53220011224888899
Q gi|254781050|r 193 FIDVLELFLADEATE-SIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPG---RTMGHAGAVISGGKGGA 268 (300)
Q Consensus 193 ~~d~L~~~~~Dp~T~-~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g---~~~gHaGAi~~~~~g~a 268 (300)
+.++++....=..++ -|++.||.| +--+..|++|-..- ....+|-++.-++.-.+.- .=|||+. .+..|
T Consensus 213 m~~v~~~a~r~A~~d~pVLI~GEsG-TGKellAraIH~~S-~R~~~pFv~vnC~alp~~l~eseLFG~a~---~~~~G-- 285 (513)
T PRK10820 213 MKHVVEQARKLAMLSAPLLITGDTG-TGKDLFAYACHLAS-PRAKKPYLALNCASIPEDAVESELFGHAP---EGKKG-- 285 (513)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCC-CCHHHHHHHHHHCC-CCCCCCCEEEECCCCCHHHHHHHHCCCCC---CCCCC--
T ss_conf 9999999999859899889989898-24999999999668-87899826888998996789998638766---68897--
Q ss_pred HHHHHHHHHC--CCEECCCHHHHHHHHHHHH
Q ss_conf 9999999988--9757889899999999998
Q gi|254781050|r 269 EDKINAMKEA--GICIAPSPARIGRSLVELL 297 (300)
Q Consensus 269 ~~k~~al~~a--Gv~v~~s~~el~~~l~~~l 297 (300)
.|++| |-..-|.+++|+..+...|
T Consensus 286 -----~fe~A~gGTLfLdEI~~l~~~~Q~kL 311 (513)
T PRK10820 286 -----FFEQANGGSVLLDEIGEMSPRMQAKL 311 (513)
T ss_pred -----CEEECCCCEEEEECHHHCCHHHHHHH
T ss_conf -----55785898899978365999999999
No 425
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=29.01 E-value=43 Score=14.50 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 0456788999985399589980588
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEG 104 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteG 104 (300)
-+..-=++.||+++||+-++++|..
T Consensus 35 KP~IqYiVeEa~~aGIe~i~iVTgr 59 (291)
T COG1210 35 KPLIQYIVEEAVAAGIEEILIVTGR 59 (291)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 2219999999998699779999669
No 426
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=28.99 E-value=43 Score=14.50 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC-----------CCCCCCCCHHHHH
Q ss_conf 51013555100020011235778679998054147899999997199516764055-----------6744678999999
Q gi|254781050|r 129 CPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG-----------GDPVKGTEFIDVL 197 (300)
Q Consensus 129 c~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG-----------~D~~~G~~~~d~L 197 (300)
|.|+..-...|- ...+||.--.|.=-|+|+.-...++...| ---..++.+ .|.++-++..|.+
T Consensus 150 CaGiT~y~alk~-----~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~ 223 (339)
T COG1064 150 CAGITTYRALKK-----ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDAL 223 (339)
T ss_pred CCEEEEEEEHHH-----CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 670057600465-----38999989999877489999999999869-969999578779999998488289976781166
Q ss_pred HHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC---C----CCC----CCCCEEEEECCCCCC
Q ss_conf 99973998728899970587248999999998642267552689984301---5----765----532200112248888
Q gi|254781050|r 198 ELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKT---A----PPG----RTMGHAGAVISGGKG 266 (300)
Q Consensus 198 ~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~Grt---A----p~g----~~~gHaGAi~~~~~g 266 (300)
+.+.+- -++|+-. .+ +...-.+++..++.+ +=|+ .|.. . |.. ++..=.|+++ +
T Consensus 224 ~~~~~~--~d~ii~t--v~---~~~~~~~l~~l~~~G--~~v~---vG~~~~~~~~~~~~~~li~~~~~i~GS~~----g 287 (339)
T COG1064 224 EAVKEI--ADAIIDT--VG---PATLEPSLKALRRGG--TLVL---VGLPGGGPIPLLPAFLLILKEISIVGSLV----G 287 (339)
T ss_pred HHHHHH--CCEEEEC--CC---HHHHHHHHHHHHCCC--EEEE---ECCCCCCCCCCCCHHHHHHCCCEEEEEEC----C
T ss_conf 776734--7399998--77---455999999864297--8999---78888766666787786326708999724----8
Q ss_pred CHHHHHHHHHH---CCC---E-ECCCHHHHHHHHHHHHH
Q ss_conf 99999999998---897---5-78898999999999984
Q gi|254781050|r 267 GAEDKINAMKE---AGI---C-IAPSPARIGRSLVELLG 298 (300)
Q Consensus 267 ~a~~k~~al~~---aGv---~-v~~s~~el~~~l~~~l~ 298 (300)
+..+..++|+= -++ + ..-.++|+.+.+.++.+
T Consensus 288 ~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~ 326 (339)
T COG1064 288 TRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEK 326 (339)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHC
T ss_conf 999999999999818943248766778999999999872
No 427
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=28.70 E-value=44 Score=14.47 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6788999985399---58998058846888999999840177
Q gi|254781050|r 83 AGDAIIESIEAEI---PLIVCITEGIPVLDMVRVKARLEKSS 121 (300)
Q Consensus 83 v~dai~Ea~~agi---k~iviiteGip~~d~~~l~~~A~~~g 121 (300)
|.+.+.+|.++|+ |.=+++..|+-..+...+++++++++
T Consensus 148 Vl~gI~~A~~~G~~~vKiN~V~~~g~N~dEi~~li~~~~~~~ 189 (334)
T PRK00164 148 VLAGIDAALAAGLEPVKVNAVLMKGVNDDEIPDLLRWAKDRG 189 (334)
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999589876168999637989899999999996469
No 428
>KOG1002 consensus
Probab=28.63 E-value=44 Score=14.46 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=43.1
Q ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHH
Q ss_conf 999805414789999999719951676405567446789999999997399872889997058724
Q gi|254781050|r 154 GILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSA 219 (300)
Q Consensus 154 givSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~ 219 (300)
=++||--.+..-+-+.+.+. |||.+-=.|+=. -..-...+++|.+||+.++.+|-..-||.+
T Consensus 642 IVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs--~~ardatik~F~nd~~c~vfLvSLkAGGVA 703 (791)
T KOG1002 642 IVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMS--PAARDATIKYFKNDIDCRVFLVSLKAGGVA 703 (791)
T ss_pred HHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCC--HHHHHHHHHHHCCCCCEEEEEEEECCCCEE
T ss_conf 04987788999999886126--733899636778--677899999741288817999986058468
No 429
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=28.58 E-value=44 Score=14.46 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=70.8
Q ss_pred CCCCCCCCHHHHCCCCCCCEEEEECCHH-----HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 5775314078503578863688621204-----567889999853995899805-8846888999999840177189406
Q gi|254781050|r 54 VNVPVFTTVAEAKERTAANASVIYVPPS-----GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 54 ~~iPvy~sv~ea~~~~~~D~avI~VP~~-----~v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGP 127 (300)
.-+|-|.-++-+-.-....+-.+|+--. .-++.+++++....|+++++- -|.| -|+.++.++|+++|+.||==
T Consensus 76 Vi~p~~tf~at~~ai~~~Ga~pvf~Did~~t~~id~~~~e~~it~~tkaIi~Vh~~G~~-~d~~~i~~i~~~~~i~vIED 154 (379)
T PRK11658 76 VITPSQTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVHYAGAP-ADLDAIRAIGERYGIPVIED 154 (379)
T ss_pred EEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCEEEEC
T ss_conf 99899556999999998199899745745653548899986548265499985688986-63779999999759818970
Q ss_pred CCCEEECC-CCHHCC--------EECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCE
Q ss_conf 85101355-510002--------001123577867999805414789999999719951
Q gi|254781050|r 128 NCPGILTP-DSCKIG--------IMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQ 177 (300)
Q Consensus 128 Nc~Gii~p-~~~~lg--------i~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~ 177 (300)
.|..+=+. +..++| +.|.+...-|.=|.|.-.---.++.+..++..|++.
T Consensus 155 aA~a~Ga~~~g~~~Gs~g~a~fSF~~~K~ittGeGG~ivtnd~~l~~~~r~lr~hG~~~ 213 (379)
T PRK11658 155 AAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLIVTDDEELADRLRMLKFHGLGV 213 (379)
T ss_pred CHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf 83553665479866762445785666667877787499969999999999999779886
No 430
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=28.42 E-value=44 Score=14.44 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=21.9
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999997199516764055674467899999999973998728899
Q gi|254781050|r 165 EAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVM 211 (300)
Q Consensus 165 e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl 211 (300)
+.+..+...|+ .=.+||+|+ + +. +-|+..+-+|.-+-+..
T Consensus 126 ~~A~~lr~~GV-~ifaVGVg~-~----~~-~eL~~IAs~P~~~hvf~ 165 (224)
T cd01475 126 EVAAKARALGI-EMFAVGVGR-A----DE-EELREIASEPLADHVFY 165 (224)
T ss_pred HHHHHHHHCCC-EEEEEECCC-C----CH-HHHHHHHCCCCHHCEEE
T ss_conf 99999998798-899996374-7----98-99999855973756899
No 431
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=28.34 E-value=44 Score=14.43 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=54.2
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHH
Q ss_conf 1235778679998054147899999997---1995167640556744678999999999739987288999705872489
Q gi|254781050|r 145 GSIFRKGSVGILSRSGTLTYEAVFQTSQ---EGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEE 221 (300)
Q Consensus 145 ~~~~~pG~VgivSqSG~l~~e~~~~~~~---~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~ 221 (300)
.+.++||.|= +.-.|+--+-+.+..-. ..++|-.+=||| -++.-.|-+-..+|+-++|+++|+ |....
T Consensus 373 ~~fl~p~dvi-iaetGtS~FG~~~~~lP~~~~~i~Q~lWGSIG------~t~pAalGa~~A~~drR~IL~iGD--Gs~Ql 443 (557)
T COG3961 373 QNFLKPGDVI-IAETGTSFFGALDIRLPKGATFISQPLWGSIG------YTLPAALGAALAAPDRRVILFIGD--GSLQL 443 (557)
T ss_pred HHHCCCCCEE-EECCCCCCCCCEEEECCCCCEEECCCCHHHCC------CCCHHHHHHHHCCCCCCEEEEECC--CHHHH
T ss_conf 8557999889-98146431363202258887587300001104------342765315551877517999727--33664
Q ss_pred HHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9999999864226755268998
Q gi|254781050|r 222 EAAQFLKDEAKRGRKKPIVGFV 243 (300)
Q Consensus 222 ~aa~fi~~~~~~~~~KPVva~~ 243 (300)
-. .-+..-.|.. -||++..+
T Consensus 444 Tv-QEiStmiR~g-l~p~ifvl 463 (557)
T COG3961 444 TV-QEISTMIRWG-LKPIIFVL 463 (557)
T ss_pred HH-HHHHHHHHCC-CCCEEEEE
T ss_conf 69-9999999748-98179999
No 432
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=28.27 E-value=44 Score=14.42 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC------CCCCEEECCC-CCCCCCCCCHHHHCCCCCCCEEEEECC
Q ss_conf 797399988884377999999986269818997658------9988687277-457753140785035788636886212
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP------KKGSTYWTGG-NVNVPVFTTVAEAKERTAANASVIYVP 79 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P------gkgg~~~~g~-~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300)
+++||++.| .|-.|+--+++....+-.+ +.-+.+ --..|..+.. .++-|--.+.+++..+-..+..+....
T Consensus 29 ~~s~vlvvG-~GglG~~~~~~la~aGvg~-l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~ 106 (254)
T COG0476 29 KDSRVLVVG-AGGLGSPAAKYLALAGVGK-LTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYL 106 (254)
T ss_pred HHCEEEEEC-CCCCCCHHHHHHHHCCCCE-EEEEECCEEEECCCCCEEECCHHHCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 648289977-7633519999999826985-99985885770015650303341168888999999999978994899852
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 045678899998539958998058846888999999840177189406851013
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
...-.+-+ +..-+....++-.|..|..+. .+.+.++..+..++-.++.|.-
T Consensus 107 ~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~--~iN~~~~~~~~pli~~~~~~~~ 157 (254)
T COG0476 107 ERLDEENA-EELIAQFDVVLDCTDNFETRY--LINDACVKLGIPLVHGGAIGFE 157 (254)
T ss_pred CCCCHHHH-HHHHHCCCEEEECCCCHHHHH--HHHHHHHHHCCCEEECCCCCCE
T ss_conf 33667789-998715889997335177899--9999999849988963126626
No 433
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=28.25 E-value=44 Score=14.42 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=50.6
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCC
Q ss_conf 621204567889999853995899805884688---89999998401771894068510135551000200112357786
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGS 152 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~ 152 (300)
+.++-..+.+++.|-....|-.++-.|+-|+.+ |..++-++|+++++--+=-|--|+-+...++. + ...++.|+
T Consensus 187 l~tdv~~ie~~i~~~g~~~i~cVlSTTScFAPR~~D~i~eiAklC~~~~IpHvVNNAYGlQ~~~~~~~-i--~~A~r~GR 263 (444)
T TIGR03531 187 LTTDVEDIERAIEEIGPENILCVLSTTSCFAPRSPDDIEEIAKICAKYDIPHVVNNAYGLQSNKYMEK-I--NKAIKVGR 263 (444)
T ss_pred EECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH-H--HHHHHCCC
T ss_conf 74699999999998286764799853654599997669999999997499837842036617999999-9--99986498
Q ss_pred EEEEEECC
Q ss_conf 79998054
Q gi|254781050|r 153 VGILSRSG 160 (300)
Q Consensus 153 VgivSqSG 160 (300)
|-.+-||.
T Consensus 264 VDa~VQSt 271 (444)
T TIGR03531 264 VDAVVSST 271 (444)
T ss_pred CEEEEEEC
T ss_conf 31999706
No 434
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=28.04 E-value=45 Score=14.40 Aligned_cols=225 Identities=14% Similarity=0.153 Sum_probs=105.2
Q ss_pred CCHHHHCCCCCCCEEEEECCHH-----------------HHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHHHHCC
Q ss_conf 4078503578863688621204-----------------56788999985399589980588--4688899999984017
Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPS-----------------GAGDAIIESIEAEIPLIVCITEG--IPVLDMVRVKARLEKS 120 (300)
Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~-----------------~v~dai~Ea~~agik~iviiteG--ip~~d~~~l~~~A~~~ 120 (300)
+.+..+.+ .++|.--+|+|.. .+.+++..|.+.|++..+-.... .+.....++.+.+.+.
T Consensus 79 ~di~~a~~-~g~~~v~i~~~~Sd~h~~~~l~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~ 157 (378)
T PRK11858 79 SDIDASID-CGVDAVHIFIATSDIHLKYKLKKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEA 157 (378)
T ss_pred HHHHHHHH-CCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 77999985-79698999960679999999689989999999999999997698699944012568999999999999974
Q ss_pred CC-EEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHH--HCCCC--EEEEEECCCCCCCCCCHHH
Q ss_conf 71-8940685101355510002001123577867999805414789999999--71995--1676405567446789999
Q gi|254781050|r 121 SS-RLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTS--QEGLG--QSTAVGIGGDPVKGTEFID 195 (300)
Q Consensus 121 g~-riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~--~~g~G--~S~~VsiG~D~~~G~~~~d 195 (300)
|. ++.=|.+.|..+|....--+-.-.-..+-++++=.. -.++..+++.++ ++|.. .+++-|+|--+ --.++.+
T Consensus 158 Gad~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~i~~H~H-Nd~GlAvANalaAv~AGa~~v~~Tv~GiGERa-GNa~le~ 235 (378)
T PRK11858 158 GADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHCH-NDFGMATANAIAGIEAGATQVHTTVNGLGERA-GNAALEE 235 (378)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHCCCEEEEEEEEEECCC-CCCCHHH
T ss_conf 998999636556669999999999999726985599970-77555999999999809998998754465465-6614999
Q ss_pred HHHHHHC--CCCCCEEEEEEECCCHHHHHHHHHHHHH--HHCCCCCCEEE-----EEEEECCCCC------------CCC
Q ss_conf 9999973--9987288999705872489999999986--42267552689-----9843015765------------532
Q gi|254781050|r 196 VLELFLA--DEATESIVMVGEIGGSAEEEAAQFLKDE--AKRGRKKPIVG-----FVAGKTAPPG------------RTM 254 (300)
Q Consensus 196 ~L~~~~~--Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~--~~~~~~KPVva-----~~~GrtAp~g------------~~~ 254 (300)
++-.|.. .-+|. +--..-.+..+++... +.....|||+. ..+|.+...- ..+
T Consensus 236 v~~~L~~~~~~~~~-------~~~~~l~~~s~~v~~~~~~~i~~~~pivG~~aF~h~sGiH~~~i~k~~~~Ye~~~P~~v 308 (378)
T PRK11858 236 VVMALKYLYGIDLG-------IDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFPPEEV 308 (378)
T ss_pred HHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCHHHC
T ss_conf 99999974497766-------66889999999999995899987787655213010155556767468213678896993
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 200112248888999999999988975788989999999999
Q gi|254781050|r 255 GHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVEL 296 (300)
Q Consensus 255 gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~ 296 (300)
|..-.+.-+....-..-...|++.|+..- .+++.+++.++
T Consensus 309 G~~~~i~~g~~SG~~~v~~~l~~~G~~l~--~~~~~~i~~~v 348 (378)
T PRK11858 309 GLERRIVLGKHSGRHALKNKLKELGIELS--REELQELLEKV 348 (378)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCCCCCC--HHHHHHHHHHH
T ss_conf 98538998657699999999997599999--99999999999
No 435
>KOG2499 consensus
Probab=28.01 E-value=45 Score=14.40 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=110.2
Q ss_pred EEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 77179739998888437799999998626981899765899886872774577531407850357886368862120456
Q gi|254781050|r 4 LVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 4 l~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
.++++.-..+.-.+--.|..|. +|- =.+.|.+-.+++-=+...-...+-|.|.-= - --.|+|=-|+|-+..
T Consensus 130 ~V~~~~~~a~i~A~tvwGAlrg---lET-fSqLv~~d~~~~~~~~~~~~I~D~PrF~hR-G----lLlDTSRhylpv~~I 200 (542)
T KOG2499 130 VVSTTATFAVILANTVWGALRG---LET-FSQLVWGDSIGGLFMIATAYIQDKPRFGHR-G----LLLDTSRHYLPVKVI 200 (542)
T ss_pred EEECCCCEEEEEEHHHHHHHHH---HHH-HHHHHEECCCCCEEEEEEEEEECCCCCCCC-C----EEEECCCCEECHHHH
T ss_conf 9634862488860247888777---888-887741206896698600267426777634-2----477235560019999
Q ss_pred HHHHHHHHHC-CCCE---EEEECCCCC----------------------HHHHHHHHHHHHCCCCEEE------------
Q ss_conf 7889999853-9958---998058846----------------------8889999998401771894------------
Q gi|254781050|r 84 GDAIIESIEA-EIPL---IVCITEGIP----------------------VLDMVRVKARLEKSSSRLI------------ 125 (300)
Q Consensus 84 ~dai~Ea~~a-gik~---iviiteGip----------------------~~d~~~l~~~A~~~g~rii------------ 125 (300)
+.. +|+..+ .... -++=+.-|| .+|..+++++||.+|+|++
T Consensus 201 krt-LeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~sW 279 (542)
T KOG2499 201 KRT-LEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFDTPGHTGSW 279 (542)
T ss_pred HHH-HHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 999-9998765321467874057877634677531430478882315059899999999886263663214688654554
Q ss_pred ECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 06851013555100020011235778679998054147899999997--1995167640556744678999999999739
Q gi|254781050|r 126 GPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQ--EGLGQSTAVGIGGDPVKGTEFIDVLELFLAD 203 (300)
Q Consensus 126 GPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~--~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~D 203 (300)
||.-+++..|--..-.. ....|+ +--+-.-+|+++...-. ....--.+..+|||-+. +..+..+
T Consensus 280 g~g~~~fl~p~~~~~~~----~~~~gp---lnP~~n~tydvls~i~~dv~evFp~~~~HlGGDEV~-------~~CW~s~ 345 (542)
T KOG2499 280 GPGYPDFLTPCWSSFEV----QPPFGP---LNPTNNHTYDVLSEIFEDVSEVFPDEFFHLGGDEVS-------TPCWKSN 345 (542)
T ss_pred CCCCCCCCCCCCCCCCC----CCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCHHHEECCCCEEE-------CCCCCCC
T ss_conf 57887545786334566----788767---787751389999999999998686977245785341-------2120598
Q ss_pred CCCCEEEEEEECC--CHHHHHHHH-HHHHH--HHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCC-CC--HHHHHHHH
Q ss_conf 9872889997058--724899999-99986--42267552689984301576553220011224888-89--99999999
Q gi|254781050|r 204 EATESIVMVGEIG--GSAEEEAAQ-FLKDE--AKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGK-GG--AEDKINAM 275 (300)
Q Consensus 204 p~T~~Ivl~gEiG--G~~E~~aa~-fi~~~--~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~-g~--a~~k~~al 275 (300)
|+.+--+ +-. |..+...-+ |+... .-.+.+|-+|.+-...+-+.-. ...+|+.-=. ++ .+.+....
T Consensus 346 ~~Iq~fM---~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~~i---~p~tiiq~W~~~~~~~~~~k~v~ 419 (542)
T KOG2499 346 PEIQDFM---RKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKRKI---DPRTIIQIWKIGTWYPKELKIVT 419 (542)
T ss_pred HHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCC---CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 4799999---73798702889999999999999974575279833120666668---98750333316886288999986
Q ss_pred HHCCCEEC
Q ss_conf 98897578
Q gi|254781050|r 276 KEAGICIA 283 (300)
Q Consensus 276 ~~aGv~v~ 283 (300)
++-++++-
T Consensus 420 ~~~~~ivs 427 (542)
T KOG2499 420 KGYRFIVS 427 (542)
T ss_pred CCCCEEEE
T ss_conf 06866898
No 436
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=27.79 E-value=45 Score=14.37 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=52.3
Q ss_pred HHHHCCCCEEEEECCCCC-----HHHHHHHHHHHHCCCCEE----------EECCCCEEECCC--CHHCCEECCCCCCC-
Q ss_conf 998539958998058846-----888999999840177189----------406851013555--10002001123577-
Q gi|254781050|r 89 ESIEAEIPLIVCITEGIP-----VLDMVRVKARLEKSSSRL----------IGPNCPGILTPD--SCKIGIMPGSIFRK- 150 (300)
Q Consensus 89 Ea~~agik~iviiteGip-----~~d~~~l~~~A~~~g~ri----------iGPNc~Gii~p~--~~~lgi~p~~~~~p- 150 (300)
++-..+-+.++|+|||+= .-+..++.+++++++.++ +||+--|+...- ..++-+.-+.+-|-
T Consensus 167 ~~~~~~~~~~~ivtegVfSMdGDiapL~~l~~L~~~y~a~L~vDeAH~~GvlG~~G~G~~e~~gl~~~vdi~~gTlsKA~ 246 (395)
T PRK06939 167 EAKEAGARHKLIATDGVFSMDGDIANLPEICDLADKYDALVMVDDSHAVGFLGENGRGTVEHCGVMDRVDIITGTLGKAL 246 (395)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCEEEECCCCCCHHHHCCCCCCCEEEECCCHHHH
T ss_conf 60021586289999667777876015999999999727379861430000345899867998099988689977327666
Q ss_pred -CCE-EEEEECCCHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCHHHHHHHHHCCC
Q ss_conf -867-99980541478999999971--9951676405567446789999999997399
Q gi|254781050|r 151 -GSV-GILSRSGTLTYEAVFQTSQE--GLGQSTAVGIGGDPVKGTEFIDVLELFLADE 204 (300)
Q Consensus 151 -G~V-givSqSG~l~~e~~~~~~~~--g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp 204 (300)
|.. |+|+-|-. +.+++... .+=||+.+.--. .. -....|+.++++|
T Consensus 247 ~G~~Ggfv~g~~~----~i~~l~~~~r~~ifStalpp~~---~a-a~~~al~~~~~~~ 296 (395)
T PRK06939 247 GGASGGYTAGKKE----VIDWLRQRSRPYLFSNSLAPAI---VA-ASIKVLELLEESD 296 (395)
T ss_pred HCCCCCEEECCHH----HHHHHHHHCHHHHCCCCCCHHH---HH-HHHHHHHHHHHCH
T ss_conf 2476514516678----8999998471221157998799---99-9999999987495
No 437
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=27.33 E-value=46 Score=14.32 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHHHHHCCCCEEEECCCCEEECCCC---------HHCCEECCC
Q ss_conf 120456788999985399589980588468--889999998401771894068510135551---------000200112
Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPV--LDMVRVKARLEKSSSRLIGPNCPGILTPDS---------CKIGIMPGS 146 (300)
Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~--~d~~~l~~~A~~~g~riiGPNc~Gii~p~~---------~~lgi~p~~ 146 (300)
..|.-.--.+..|.+=||+.+ =||-|=|. +|..+|++..++++..=|==-|=|++-+.. -|+++. -+
T Consensus 46 Ls~eei~~~~~~a~~fGV~kv-KlTGGEPlLR~D~~~Ii~~~~~~~~~~vSmTTNG~LL~~~A~~Lk~AGLdRVNVS-Ld 123 (324)
T TIGR02668 46 LSPEEIERIVRVASEFGVRKV-KLTGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVS-LD 123 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEC-CC
T ss_conf 589999999999987088327-7517874345669999986146750344203031448989999998285613120-26
Q ss_pred CCCCCCEEEEE-ECCCHHHHHHHHHHHC-CCCE-----EEEEECC-CCCCCCCC-HHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 35778679998-0541478999999971-9951-----6764055-67446789-9999999973998728899970
Q gi|254781050|r 147 IFRKGSVGILS-RSGTLTYEAVFQTSQE-GLGQ-----STAVGIG-GDPVKGTE-FIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 147 ~~~pG~VgivS-qSG~l~~e~~~~~~~~-g~G~-----S~~VsiG-~D~~~G~~-~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
...|=.---|. |++.-.-++..=+..+ ..|+ ..+|--| |+ -. +-|++++.++ =++.+++=+-|
T Consensus 124 tld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN~Vvl~G~N~----~~~~~~m~~f~~~-~~~g~~LQlIE 195 (324)
T TIGR02668 124 TLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLNMVVLKGIND----NEEIPDMVEFAAD-YEGGAILQLIE 195 (324)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC----CCCHHHHHHHHHH-HHCCCEEEEEE
T ss_conf 788678886448998607899999999997289813788887547788----5007999999987-51593689861
No 438
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=27.31 E-value=46 Score=14.31 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=50.0
Q ss_pred CCCCCHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC--CCEEEECCC
Q ss_conf 531407850357886368862--1204567889999853995899805884688899999984017--718940685
Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIY--VPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS--SSRLIGPNC 129 (300)
Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~--VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~--g~riiGPNc 129 (300)
-.|..|.||.+.-++|+++.- .|-|.-++.+.|- .+|.+.++++-|.-|.- +.++++++.+. ..+++|-..
T Consensus 240 ~~y~~v~eAl~~lG~~i~ilKlgm~~PLp~~~i~~F-~~g~d~VlVVEE~~p~i-E~qik~~~~~~~~~~~v~GK~d 314 (595)
T TIGR03336 240 IAYNYVKEALERLGVDVSVLKIGFTYPVPEGLVEEF-LSGVEEVLVVEELEPVV-EEQVKALAGTAGLNIKVHGKED 314 (595)
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH-HHCCCEEEEEECCCHHH-HHHHHHHHHHCCCCCEEECCCC
T ss_conf 108999999997299962688437678988999999-84598899993583658-9999999751689954778887
No 439
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.27 E-value=46 Score=14.31 Aligned_cols=42 Identities=33% Similarity=0.397 Sum_probs=26.3
Q ss_pred HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE-EEEEEEC
Q ss_conf 97399872889997058724899999999864226755268-9984301
Q gi|254781050|r 200 FLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV-GFVAGKT 247 (300)
Q Consensus 200 ~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv-a~~~Grt 247 (300)
-.+||.++.||++|=- -.++ .+++..+.+.+-|+| .|-.|||
T Consensus 223 ~~~DP~cRGiViLGLd--AP~~----eL~~sF~aaa~~piVKGFAVGRT 265 (310)
T COG3892 223 ERRDPHCRGIVILGLD--APLE----ELEDSFAAAAGFPIVKGFAVGRT 265 (310)
T ss_pred HHCCCCCCEEEEECCC--CCHH----HHHHHHHHHCCCCEEEEEECCHH
T ss_conf 8059540225785466--7199----99999885448970020000104
No 440
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.20 E-value=46 Score=14.30 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC--EECCCCCCCCCE------E----EEEECCCHHHHHHHHHHH
Q ss_conf 4688899999984017718940685101355510002--001123577867------9----998054147899999997
Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG--IMPGSIFRKGSV------G----ILSRSGTLTYEAVFQTSQ 172 (300)
Q Consensus 105 ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg--i~p~~~~~pG~V------g----ivSqSG~l~~e~~~~~~~ 172 (300)
....|.++|+++|+++|++||= =|=.|+.++.- ..|.....+... + .+.-+---+|+++..+-.
T Consensus 65 YT~~d~~eiv~yA~~rgI~ViP----EiD~PgHs~a~~~~yPel~~~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~ 140 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVP----EIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFG 140 (311)
T ss_pred ECHHHHHHHHHHHHHCCCEEEE----EECCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3899999999999985998965----333741479999869885478887665667786672236898899999999999
Q ss_pred C--CCCEEEEEECCCCCCCCC---CHHHHHHHHHCC
Q ss_conf 1--995167640556744678---999999999739
Q gi|254781050|r 173 E--GLGQSTAVGIGGDPVKGT---EFIDVLELFLAD 203 (300)
Q Consensus 173 ~--g~G~S~~VsiG~D~~~G~---~~~d~L~~~~~D 203 (300)
. .+=-+..+.+|||=+... +-.++-+++.+.
T Consensus 141 Ev~~lFp~~y~HiGGDEv~~~~W~~~p~~~~~m~~~ 176 (311)
T cd06570 141 EMAELFPDEYFHIGGDEVDPKQWNENPRIQAFMKEH 176 (311)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 999857864156457546754243798899999983
No 441
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=27.09 E-value=47 Score=14.29 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH-----
Q ss_conf 973999888843779999999862698189976589988687277457753140785035788636886212045-----
Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG----- 82 (300)
Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~----- 82 (300)
+.+|.+.|. |+-|+..+++...+ |.+ |.++.|....... .. .--|.+..|..++ +|.-++.+|-..
T Consensus 36 gk~vgIiG~-G~IG~~va~~l~~f-g~~-V~~~d~~~~~~~~---~~-~~~~~~l~~ll~~--sDii~~~~plt~~T~~l 106 (176)
T pfam02826 36 GKTVGIIGL-GRIGRAVARRLKAF-GMK-VIAYDRYPKAEAE---AL-GARYVSLDELLAE--SDVVSLHLPLTPETRHL 106 (176)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHH-CCC-EEEECCCCCCHHH---HC-CEEECCHHHHHHH--CCEEEECCCCCCCCCCC
T ss_conf 999999896-99999999999983-981-2543798761023---15-7166689999862--99887547674202463
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 6788999985399589980588468889999998401771894
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
.-...++....+. ++|=+..=+.-|+..|.+..++..++=.
T Consensus 107 i~~~~l~~mk~~a--~lIN~sRG~ivde~aL~~aL~~~~i~~a 147 (176)
T pfam02826 107 INAERLALMKPGA--ILINTARGGLVDEDALIAALKSGRIAGA 147 (176)
T ss_pred CCHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 4699998518998--8998067551289999999980991589
No 442
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.03 E-value=47 Score=14.28 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCCCCH----HHHCCCCCCCEEEEECCHHH--H--HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 7531407----85035788636886212045--6--788999985399589980588468889999998401771894
Q gi|254781050|r 56 VPVFTTV----AEAKERTAANASVIYVPPSG--A--GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 56 iPvy~sv----~ea~~~~~~D~avI~VP~~~--v--~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
=|.|..+ +++.++.+.++-+ ..+.. . .+.+..++..++..+++..-. + ......++.+++.|+.++
T Consensus 11 npf~~~~~~gie~~a~~~G~~l~~--~~~~~d~~~q~~~i~~li~~~vDgIii~p~~-~-~~~~~~l~~a~~agIPvV 84 (273)
T cd06309 11 SPWRTAETKSIKDAAEKRGFDLKF--ADAQQKQENQISAIRSFIAQGVDVIILAPVV-E-TGWDPVLKEAKAAGIPVI 84 (273)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHHHHHHHCCCCEEEECCCC-C-CCHHHHHHHHHHCCCCEE
T ss_conf 979999999999999976998999--7699999999999999997599999980576-5-435899999997499889
No 443
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=27.02 E-value=47 Score=14.28 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=11.5
Q ss_pred EECCCHHHHHHHHHHHHHC
Q ss_conf 5788989999999999843
Q gi|254781050|r 281 CIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 281 ~v~~s~~el~~~l~~~l~~ 299 (300)
....+++++.....+++.+
T Consensus 171 ~~~~~fd~l~~i~~~l~~~ 189 (192)
T cd01473 171 VIKTEWNNLNGISKFLTDK 189 (192)
T ss_pred EEECCHHHHHHHHHHHHHH
T ss_conf 9947978999999999997
No 444
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.95 E-value=47 Score=14.27 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=53.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE---CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 3999888843779999999862698189976589988687---2774577531407850357886368862120456788
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYW---TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~---~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
+|.|.|. |--|..-+....+. |.. |.|+.+.+.-... .| ..+ .++... ++.+ ++|+-++++|+..+.+.
T Consensus 3 kI~IiGl-GLIGgSla~al~~~-~~~-V~g~d~~~~~~~~A~~~g-~id-~~~~~~-~~~~--~aDliila~Pv~~~~~~ 74 (280)
T PRK07417 3 NIGIVGL-GLIGGSLGLDLRSL-GHT-VYGVSRRESTCERAIERG-LVD-EASTDL-SLLK--DCDLVILALPIGLLLPP 74 (280)
T ss_pred EEEEEEC-CHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHCC-CCC-EECCCH-HHHC--CCCEEEECCCHHHHHHH
T ss_conf 8999931-85799999999968-997-999979999999999869-975-202787-4605--79989987974778999
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999985399589980588468889999998401
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEK 119 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~ 119 (300)
+.+.... ++.=.+||+=-..+. .+.+.+++
T Consensus 75 ~~~~~~~-l~~~~iitDv~SvK~--~i~~~~~~ 104 (280)
T PRK07417 75 SEELIPA-LPPEAIVTDVGSVKE--PIVEAWEK 104 (280)
T ss_pred HHHHHHH-CCCCCEEEECHHHHH--HHHHHHHH
T ss_conf 9999864-789848996522307--89999986
No 445
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.93 E-value=47 Score=14.27 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCCCCCHHHHCCCCCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 75314078503578863688621--204567889999853995899805884688899999984017718940685
Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYV--PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~V--P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300)
+-|++-++||-++-+.++-++=- -+..-.+++.+++..+...+|+ -++........++.|++.|+-++|-.+
T Consensus 16 ~~v~~G~~eaA~~lGw~v~v~D~~g~~~~~~~~i~~ai~~k~D~Iii--~~~D~~~~~~~l~~A~~agIPvv~~~~ 89 (280)
T cd06315 16 LGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVL--GGVDAAELQAELELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 54988999999975987999889999999999999999639999999--982978878999999987997896247
No 446
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.90 E-value=47 Score=14.27 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=52.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCC--CCEEEEE----CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 399988884377999999986269--8189976----5899886872774577531407850357886368862120456
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQ--TQVVGGI----HPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~g--t~ivagV----~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
..+..+=.|..=.-.+.-|++|-+ +-|..-+ --+++.++ -+-+++.++.++..+|+ |.|-+.-.
T Consensus 27 H~VlHAPqGD~Y~~~~~tMlER~~~~pPvT~s~~~~rdLgr~t~e--------l~~~~~~~a~~~~~P~~--ivv~~SCt 96 (524)
T PRK02910 27 HYVLHAPQGDDYADLLFTMLERRGDRPPVTYSTVQARDLGRGTAE--------LVKDTIRRADERFQPDL--IVVGPSCT 96 (524)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHCCCHHH--------HHHHHHHHHHHCCCCCE--EEECCHHH
T ss_conf 599726988742457899886348999847875314440565078--------88999999854429857--99854006
Q ss_pred HHHHHHHHH-----CCCCEEEEECCCCC-----HH---H---HHHHHHHHH-----------CCCCEEEECCCCEEECCC
Q ss_conf 788999985-----39958998058846-----88---8---999999840-----------177189406851013555
Q gi|254781050|r 84 GDAIIESIE-----AEIPLIVCITEGIP-----VL---D---MVRVKARLE-----------KSSSRLIGPNCPGILTPD 136 (300)
Q Consensus 84 ~dai~Ea~~-----agik~iviiteGip-----~~---d---~~~l~~~A~-----------~~g~riiGPNc~Gii~p~ 136 (300)
...+.|-.. +|++.=|+.- .+| |. | ..-++.+++ +--+.||||..+|+-+++
T Consensus 97 a~liQedp~~la~~~~l~~~vi~~-e~~~y~~~E~~aAd~t~~qlVr~~~~~~~~~~~~~t~~PsvNIlGpt~LGF~~r~ 175 (524)
T PRK02910 97 AELLQEDPGGLAKGAGLPIPVLVL-ELNAYRVKENWAADETFYQLVRALAKKAARLPQPKTARPSVNLLGPTALGFHNRD 175 (524)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHH
T ss_conf 988754611223346999864455-5772105678888999999999985205667777788963676077756768778
No 447
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.84 E-value=47 Score=14.26 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.9
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999739987
Q gi|254781050|r 196 VLELFLADEAT 206 (300)
Q Consensus 196 ~L~~~~~Dp~T 206 (300)
+...|+-||.-
T Consensus 292 y~~A~~~Dp~S 302 (514)
T PRK00881 292 YDKAYACDPVS 302 (514)
T ss_pred HHHHHHCCCCC
T ss_conf 99987049745
No 448
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=26.76 E-value=47 Score=14.25 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEE-EECCC-------CCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHH
Q ss_conf 7867999805414789999999719951676-40556-------744678999999999739987288999705872489
Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTA-VGIGG-------DPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEE 221 (300)
Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~-VsiG~-------D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~ 221 (300)
-|++|.+..+.-+.+.... +.......+ +...- ..++|.+ .+.++.+.+. ..+.||+-+-=.|+.-.
T Consensus 175 ~~~lg~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~V~il~~~pG~~-~~~l~~~~~~-~~~GiVl~g~G~Gn~p~ 249 (323)
T cd00411 175 YGPLGYIVEDKVYYYRSVF---KAHTINSEFDVKLNSLPKVGILYLYPGIS-AEAVRAFLRA-GYKGIVLAGYGAGNVPT 249 (323)
T ss_pred CCCEEEEECCEEEECCCCC---CCCCCCCCCCCCCCCCCCEEEEEECCCCC-HHHHHHHHHC-CCCEEEEEEECCCCCCH
T ss_conf 8814999789888704666---77767764434667899679999689989-9999999858-89889997268998998
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCC---------CCCCEEEEECCCCCC
Q ss_conf 999999986422675526899843015765---------532200112248888
Q gi|254781050|r 222 EAAQFLKDEAKRGRKKPIVGFVAGKTAPPG---------RTMGHAGAVISGGKG 266 (300)
Q Consensus 222 ~aa~fi~~~~~~~~~KPVva~~~GrtAp~g---------~~~gHaGAi~~~~~g 266 (300)
+..++++.+.+ ...||| .+=|+ +.| +.....|+|-++.+.
T Consensus 250 ~~~~~l~~a~~--~gi~Vv--~~Sq~-~~G~v~~~y~~g~~l~~~G~i~~~dlt 298 (323)
T cd00411 250 DLIDELEEAAE--RGVVVV--NSTQC-EEGAVTRDYEVGGALAKYGIIASGDLN 298 (323)
T ss_pred HHHHHHHHHHH--CCCEEE--EECCC-CCCCCCCCCCCCHHHHHCCEEECCCCC
T ss_conf 89999999997--896799--97268-988547675533136539989899999
No 449
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=26.59 E-value=48 Score=14.23 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=51.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEECCC--C---CCCCCCCCHHHHCCCCCCCEEEEECCHHHH
Q ss_conf 399988884377999999986269818997-6589988687277--4---577531407850357886368862120456
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGG-IHPKKGSTYWTGG--N---VNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivag-V~Pgkgg~~~~g~--~---~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300)
||.|-|.||--|..-.+.+.+.-.-++..- .+....|+.+..- . ...+.++ .+..+..++|+...+.|....
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~--~~~~~~~~~Dvvf~a~p~~~s 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE--PEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEEC--CCCCCCCCCCEEEECCCCHHH
T ss_conf 989989451999999999985899745777740465897578859664577350565--331100179999993882788
Q ss_pred HHHH---HHHHHCCCCEEEEECCC
Q ss_conf 7889---99985399589980588
Q gi|254781050|r 84 GDAI---IESIEAEIPLIVCITEG 104 (300)
Q Consensus 84 ~dai---~Ea~~agik~iviiteG 104 (300)
.+.+ .+..++|++ ++=.+.-
T Consensus 79 ~~~~~~~~~~~~~g~~-VIDlSad 101 (122)
T smart00859 79 KEIAPLLPKAAEAGVK-VIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHHCCCE-EEECCHH
T ss_conf 9999988988756987-9868477
No 450
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.57 E-value=48 Score=14.23 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=12.2
Q ss_pred CEEEEEECCCH------HHHHHHHHHHCCCCEEEEEECC
Q ss_conf 67999805414------7899999997199516764055
Q gi|254781050|r 152 SVGILSRSGTL------TYEAVFQTSQEGLGQSTAVGIG 184 (300)
Q Consensus 152 ~VgivSqSG~l------~~e~~~~~~~~g~G~S~~VsiG 184 (300)
.+++-||+|.. +.+.+..+.+.|.--=.++.+|
T Consensus 62 ~~~~QS~~g~~~Wl~P~~~~~l~~l~~~G~~~v~v~p~g 100 (135)
T cd00419 62 ELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIG 100 (135)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCE
T ss_conf 899864888888789987999999986699719998985
No 451
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=26.51 E-value=48 Score=14.22 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=22.3
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC
Q ss_conf 9999853995899805884688899999984017718940685101355510002001
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300)
...++..--+.+|..-+|...---.+ ++-...+|+..+|+-= ..| ..++|+.|
T Consensus 95 ~~~~i~~~~kPvIaai~G~a~GgG~~---lal~cD~~ias~~a~f-~~~-~~~lGl~p 147 (266)
T PRK05981 95 FLRRLRNLHCPIVTAVNGPAAGVGMS---FALMGDLILCARSAYF-LQA-FRRIGLVP 147 (266)
T ss_pred HHHHHHHCCCCEEEEEECEEECCCHH---HHHCCCCCCCCCCCEE-ECC-CCCEEECC
T ss_conf 99999958999899980766326367---7630640565788789-756-65660178
No 452
>PRK13558 bacterio-opsin activator; Provisional
Probab=26.26 E-value=46 Score=14.32 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCC--HHHHCCCCCCCEEEEECCHHH
Q ss_conf 717973999888843779999999862698189976589988687277457753140--785035788636886212045
Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTT--VAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~s--v~ea~~~~~~D~avI~VP~~~ 82 (300)
++.+.|+-|+-+|+.-..+ ..-- .+.|=|-|+-.. .|=++- +.|++.+..+++.+|..+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~----~r~~-~~~~DCvv~dy~-----------~~~~dGieLLe~vRe~~p~lP~Il~t~~g 99 (674)
T PRK13558 36 LDEDGRFDVTQIRDFVAAR----DRVD-DPDIDCVVAVHE-----------PDGFDGVAFLEAVRQTHAEFPVVVVPTAV 99 (674)
T ss_pred CCCCCCCCEEEECCHHHHH----HHHC-CCCCCEEEECCC-----------CCCCCHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 6667742127632388898----6531-589876996565-----------78886799999986138999889995678
Q ss_pred HHHHHHHHHHCCCCEEEEEC
Q ss_conf 67889999853995899805
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 83 v~dai~Ea~~agik~iviit 102 (300)
--++..||+++|+..-+-.+
T Consensus 100 sE~vas~AI~AGvt~Ylp~~ 119 (674)
T PRK13558 100 DEDVARRAVDADATGLVPAV 119 (674)
T ss_pred CHHHHHHHHHHCHHHHCCCC
T ss_conf 58999998751636433447
No 453
>pfam00710 Asparaginase Asparaginase.
Probab=26.15 E-value=48 Score=14.18 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 467899999999973998728899970587248999999998642267552689984301
Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300)
++|.+ .++++.+.+ ...+.||+-+==-|+.-.+..++++.+.+ ...|||. +=|+
T Consensus 215 ~pG~~-~~~l~~~~~-~~~~GiVl~~~G~Gn~p~~~~~~l~~a~~--~gi~VV~--~Sq~ 268 (318)
T pfam00710 215 YPGMD-AELLDALLA-AGAKGIVLEGFGAGNVPPALLDALKEAVA--RGIPVVV--ASQC 268 (318)
T ss_pred CCCCC-HHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCEEEE--ECCC
T ss_conf 89989-999999986-79988999707898899899999999996--8998999--6158
No 454
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=26.01 E-value=49 Score=14.17 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCE-----EEEECCCCCHHHHH----HHHHHHHCCCCEEEECCC---CEEECC--CCHHCCEEC---
Q ss_conf 5678899998539958-----99805884688899----999984017718940685---101355--510002001---
Q gi|254781050|r 82 GAGDAIIESIEAEIPL-----IVCITEGIPVLDMV----RVKARLEKSSSRLIGPNC---PGILTP--DSCKIGIMP--- 144 (300)
Q Consensus 82 ~v~dai~Ea~~agik~-----iviiteGip~~d~~----~l~~~A~~~g~riiGPNc---~Gii~p--~~~~lgi~p--- 144 (300)
.+.-++-+-...|-+. .+.+.++.++.... -+.+.|+++|+.++|-++ ++.-.| +-.-+|...
T Consensus 63 ava~~~sDI~amGa~P~~~l~~l~~p~~~~~~~l~~i~~Gi~~~~~~~g~~lvGGdT~~~~~~~~~~i~~t~~G~~~~~~ 142 (298)
T cd06061 63 AVHIAANDIATSGARPRWLLVTLLLPPGTDEEELKAIMREINEAAKELGVSIVGGHTEVTPGVTRPIISVTAIGKGEKDK 142 (298)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf 99987999998599828876121188999999999999999999998399564431586478777679999999956886
Q ss_pred ---CCCCCCCCEEEEEECCC
Q ss_conf ---12357786799980541
Q gi|254781050|r 145 ---GSIFRKGSVGILSRSGT 161 (300)
Q Consensus 145 ---~~~~~pG~VgivSqSG~ 161 (300)
..-.+||.+=+++.+=+
T Consensus 143 ~~~~~~ak~GD~Iiltg~~G 162 (298)
T cd06061 143 LVTPSGAKPGDDIVMTKGAG 162 (298)
T ss_pred EECCCCCCCCCEEEEECCCC
T ss_conf 63067799999999989840
No 455
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , . This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=25.92 E-value=49 Score=14.15 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHCCCCEEEEECCCC
Q ss_conf 98626981899765899
Q gi|254781050|r 28 AILYCQTQVVGGIHPKK 44 (300)
Q Consensus 28 ~~~y~gt~ivagV~Pgk 44 (300)
+++||+|+|++.|+=-|
T Consensus 36 ~~E~G~tki~aAVYGPr 52 (231)
T TIGR02065 36 YLEFGATKIVAAVYGPR 52 (231)
T ss_pred HHCCCCCEEEEEEECCC
T ss_conf 01137979999863776
No 456
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=25.91 E-value=25 Score=16.03 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=15.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 88999705872489999999986422675526899843
Q gi|254781050|r 208 SIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAG 245 (300)
Q Consensus 208 ~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~G 245 (300)
-|++.||.| +--+..|++|-..- ....+|.+.+-+.
T Consensus 24 pVLI~GE~G-tGK~~lAr~IH~~S-~r~~~pfi~vnc~ 59 (168)
T pfam00158 24 TVLITGESG-TGKELFARAIHQLS-PRADGPFVAVNCA 59 (168)
T ss_pred CEEEECCCC-CCHHHHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf 889989998-88899999999852-4356883125678
No 457
>PTZ00110 helicase; Provisional
Probab=25.80 E-value=49 Score=14.14 Aligned_cols=74 Identities=9% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHC--CCCCCCEEEEECCHHHHHHHH-HHHHH----CCCCEEEEECCC
Q ss_conf 69818997658998868727745775314078503--578863688621204567889-99985----399589980588
Q gi|254781050|r 32 CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAK--ERTAANASVIYVPPSGAGDAI-IESIE----AEIPLIVCITEG 104 (300)
Q Consensus 32 ~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~--~~~~~D~avI~VP~~~v~dai-~Ea~~----agik~iviiteG 104 (300)
.|-++++ +.+--.|.+.. ..+|...-+..-+ +..+--.++|.+|-+.-..=+ .||.. .+++ ++++.-|
T Consensus 218 sGrDvIg-iAqTGSGKTLA---FlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ir-~~~i~GG 292 (602)
T PTZ00110 218 SGRDMIG-IAETGSGKTLA---FLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSKLK-NSVAYGG 292 (602)
T ss_pred CCCCEEE-ECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE-EEEEECC
T ss_conf 6986799-87897889999---99999999851634367899769997383999999999999971547854-9999799
Q ss_pred CCHHHH
Q ss_conf 468889
Q gi|254781050|r 105 IPVLDM 110 (300)
Q Consensus 105 ip~~d~ 110 (300)
.|....
T Consensus 293 ~~~~~Q 298 (602)
T PTZ00110 293 VPKRFQ 298 (602)
T ss_pred CCHHHH
T ss_conf 687999
No 458
>TIGR00587 nfo apurinic endonuclease (APN1); InterPro: IPR001719 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. Family 2 groups the enzymes listed below , . Bacterial endonuclease IV (3.1.21.2 from EC) (gene nfo). Mycobacterium leprae probable endonuclease (gene end) . Yeast apurinic endonuclease APN1 (4.2.99.18 from EC). Caenorhabditis elegans hypothetical protein APN-1 or T05H10.2. Escherichia coli endonuclease IV and its Saccharomyces cerevisiae homologue Apn1 have been shown to be transition metalloproteins that require zinc and manganese for activity .; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=25.68 E-value=39 Score=14.79 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 467899999999973998728899970
Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
.+|. |.|++|-+|++++.|=+|+|
T Consensus 268 ~IG~---d~f~~~~~d~~~~~iP~~LE 291 (318)
T TIGR00587 268 YIGF---DAFRLLMQDERLKGIPIILE 291 (318)
T ss_pred CCCH---HHHHHHHCCCCCCCCCCEEE
T ss_conf 6066---88999743731015883664
No 459
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=25.55 E-value=50 Score=14.11 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHCCCCEE
Q ss_conf 5678899998539958998058846888----999999840177189
Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLD----MVRVKARLEKSSSRL 124 (300)
Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d----~~~l~~~A~~~g~ri 124 (300)
.-+|-|..=+.+|||.++|=.+|+|-.+ .++++++|.+....+
T Consensus 83 e~~ddI~~kv~aGvkS~MIDaSHl~F~~Nv~lvk~VVdFcHr~D~sV 129 (282)
T TIGR01858 83 ESFDDIKQKVAAGVKSVMIDASHLPFEQNVKLVKEVVDFCHRYDASV 129 (282)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 88768899975377235565777888887788666664421678657
No 460
>pfam04414 tRNA_deacylase D-aminoacyl-tRNA deacylase. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules.
Probab=25.53 E-value=50 Score=14.11 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCCC-CCEEEEEEECCCHHH----HHHHHHHHHHHHCCC----CC--CEEEEEEE-ECCCCCC--------CCCEEEEEC
Q ss_conf 3998-728899970587248----999999998642267----55--26899843-0157655--------322001122
Q gi|254781050|r 202 ADEA-TESIVMVGEIGGSAE----EEAAQFLKDEAKRGR----KK--PIVGFVAG-KTAPPGR--------TMGHAGAVI 261 (300)
Q Consensus 202 ~Dp~-T~~Ivl~gEiGG~~E----~~aa~fi~~~~~~~~----~K--PVva~~~G-rtAp~g~--------~~gHaGAi~ 261 (300)
.-|. .++=.+|.|||.+.+ .++++.+..+..... .+ +++.-+.| -.||.-. .+||--+--
T Consensus 84 HGPt~l~~Ps~FiEIGSte~~W~d~~a~~~~A~ai~~~~~~~~~~~~~~~ig~GGgHYapr~t~~~l~~~~~~GHi~~ky 163 (214)
T pfam04414 84 HGPTTLDVPSVFVEIGSTEEEWNDPDAAEAVAEAVLEALGKDEEEEVKPAVGIGGGHYAPRFTDIALETEYAVGHIIPKY 163 (214)
T ss_pred CCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCC
T ss_conf 48876789608999578779837938999999999998437756678889996897656678788750885788463566
Q ss_pred CCCCCCHHHHHHHHHHCCCEE--CC--CH-HHHHHHHHHHHHCC
Q ss_conf 488889999999999889757--88--98-99999999998439
Q gi|254781050|r 262 SGGKGGAEDKINAMKEAGICI--AP--SP-ARIGRSLVELLGSL 300 (300)
Q Consensus 262 ~~~~g~a~~k~~al~~aGv~v--~~--s~-~el~~~l~~~l~~l 300 (300)
.-..-+.+.-..|+++.++.. .| ++ .+--+.+.+.|.+|
T Consensus 164 ~l~~~~~~~l~~a~~~s~~~~a~iD~Ks~kg~~r~~i~~~l~~~ 207 (214)
T pfam04414 164 ALDELSDKVIRQAIEKSGADAAIIDRKSLKSEDRSRITEFLEEL 207 (214)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 54307999999999838996899975779778999999999986
No 461
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.41 E-value=50 Score=14.10 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=77.6
Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHCCCCEEEECCCCEEECC
Q ss_conf 4078503578863688621204567889999853995899805884688----899999984017718940685101355
Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL----DMVRVKARLEKSSSRLIGPNCPGILTP 135 (300)
Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~----d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300)
..+..+.+...+.+++-.=-. .-.+.+.+|+++|...+++=.+..|.. ..++++++|+..|+.+=|= +|.+-
T Consensus 64 ~~~~~~a~~~~VPV~lHLDH~-~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Tk~vv~~Ah~~gv~VEaE--lG~ig- 139 (286)
T PRK12738 64 ALCSAYSTTYNMPLALHLDHH-ESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAE--LGRLG- 139 (286)
T ss_pred HHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--ECCCC-
T ss_conf 999999998799999989999-99999999997799879873899999999999999999984739978886--41346-
Q ss_pred CCHHCCEECCCCCCCCCEEEEEECCCHH--HHHHHHHHHCCCCEEEEEECCC--CCC---CCCCHHHHHHHHHCCCCCCE
Q ss_conf 5100020011235778679998054147--8999999971995167640556--744---67899999999973998728
Q gi|254781050|r 136 DSCKIGIMPGSIFRKGSVGILSRSGTLT--YEAVFQTSQEGLGQSTAVGIGG--DPV---KGTEFIDVLELFLADEATES 208 (300)
Q Consensus 136 ~~~~lgi~p~~~~~pG~VgivSqSG~l~--~e~~~~~~~~g~G~S~~VsiG~--D~~---~G~~~~d~L~~~~~Dp~T~~ 208 (300)
+. ...+..=..+..+| -++.....+.|+- +..|++|| -.+ +.++| |.|+...+--++-
T Consensus 140 ---------g~---ed~~~~~~~~~~~T~peea~~Fv~~TgvD-~LAvaiGn~HG~y~~~p~l~~-~~L~~I~~~~~iP- 204 (286)
T PRK12738 140 ---------GV---EDDMSVDAESAFLTDPQEAKRFVELTGVD-SLAVAIGTAHGLYSKTPKIDF-QRLAEIREVVDVP- 204 (286)
T ss_pred ---------CC---CCCCCCCCCCCCCCCHHHHHHHHHHHCCC-EEHHHHCCCCCCCCCCCCCCH-HHHHHHHHCCCCC-
T ss_conf ---------65---77766665223579999999999987978-122332354677799994789-9999997307999-
Q ss_pred EEEEEECCCHHHHHHHHHH
Q ss_conf 8999705872489999999
Q gi|254781050|r 209 IVMVGEIGGSAEEEAAQFL 227 (300)
Q Consensus 209 Ivl~gEiGG~~E~~aa~fi 227 (300)
+||.|=- |..+++..+.+
T Consensus 205 LVLHGgS-G~~~e~i~~ai 222 (286)
T PRK12738 205 LVLHGAS-DVPDEFVRRTI 222 (286)
T ss_pred EEEECCC-CCCHHHHHHHH
T ss_conf 8976999-99999999999
No 462
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=25.37 E-value=50 Score=14.09 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=32.4
Q ss_pred CCCC-EEEEEECCCHHHHHHHHHHHCCCCEEE----------EEECCCCCCCC---CCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 7786-799980541478999999971995167----------64055674467---899999999973998728899970
Q gi|254781050|r 149 RKGS-VGILSRSGTLTYEAVFQTSQEGLGQST----------AVGIGGDPVKG---TEFIDVLELFLADEATESIVMVGE 214 (300)
Q Consensus 149 ~pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~----------~VsiG~D~~~G---~~~~d~L~~~~~Dp~T~~Ivl~gE 214 (300)
+||. |=+..-||+.+..+..++...|.-.-. +..+|.|.++. .+|.+-+.-+.+...-++|+= -
T Consensus 141 ~~g~~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~d~~~~v~~~t~g~gvDvv~D--~ 218 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD--T 218 (326)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEE--C
T ss_conf 99997999778546999999999984995899981757889998739988970564248999999837998788997--9
Q ss_pred CCCHH
Q ss_conf 58724
Q gi|254781050|r 215 IGGSA 219 (300)
Q Consensus 215 iGG~~ 219 (300)
+||..
T Consensus 219 vG~~~ 223 (326)
T COG0604 219 VGGDT 223 (326)
T ss_pred CCHHH
T ss_conf 86799
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.36 E-value=50 Score=14.09 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=23.5
Q ss_pred CEEEEE-CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 956771-79739998888437799999998626981899
Q gi|254781050|r 1 MSILVD-KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVG 38 (300)
Q Consensus 1 msil~~-~~t~vivqGitg~~g~~~~~~~~~y~gt~iva 38 (300)
|-.|-+ ++-||+|.|+ |+.|.--++..... |-+|.+
T Consensus 1 m~~~~~~~~k~i~viGl-G~sG~s~a~~L~~~-G~~V~~ 37 (450)
T PRK02472 1 MKTITTFQNKKVLVLGL-AKSGYAAAKLLHKL-GANVTV 37 (450)
T ss_pred CCCCCCCCCCEEEEEEE-CHHHHHHHHHHHHC-CCEEEE
T ss_conf 97630358998999977-89999999999988-698999
No 464
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.18 E-value=50 Score=14.07 Aligned_cols=150 Identities=16% Similarity=0.142 Sum_probs=78.3
Q ss_pred CCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 314078503578863688621204567889999853995899805884688----8999999840177189406851013
Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL----DMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~----d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
.+..+..+.++..+.+++-.=-. .-.+.+.+|+++|...+++=.+..|.. ..++++++|+..|+-+=|- +|.+
T Consensus 62 ~~~~~~~~a~~~~VPV~lHLDH~-~~~e~~~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaE--lG~i 138 (284)
T PRK12737 62 IIAIAEVAARKYNIPLALHLDHH-EDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAE--LGRL 138 (284)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--ECCC
T ss_conf 99999999998799999988999-99999999998199879870999999999999999999864528869996--3112
Q ss_pred CCCCHHCCEECCCCCCCCCEEEEEECCCHH--HHHHHHHHHCCCCEEEEEECCC--CCCC---CCCHHHHHHHHHCCCCC
Q ss_conf 555100020011235778679998054147--8999999971995167640556--7446---78999999999739987
Q gi|254781050|r 134 TPDSCKIGIMPGSIFRKGSVGILSRSGTLT--YEAVFQTSQEGLGQSTAVGIGG--DPVK---GTEFIDVLELFLADEAT 206 (300)
Q Consensus 134 ~p~~~~lgi~p~~~~~pG~VgivSqSG~l~--~e~~~~~~~~g~G~S~~VsiG~--D~~~---G~~~~d~L~~~~~Dp~T 206 (300)
.-.+ +.+..-.....+| -++.....+.|+- +..|++|| -.+. .++ .|.|+-..+--.+
T Consensus 139 gg~e-------------d~~~~~~~~~~~T~peea~~Fv~~TgvD-~LAvaiGt~HG~yk~~p~L~-~d~L~~I~~~~~i 203 (284)
T PRK12737 139 GGQE-------------DDLVVDEKDAMYTNPDAAAEFVERTGID-SLAVAIGTAHGLYKGEPKLD-FDRLEEIREKVSI 203 (284)
T ss_pred CCCC-------------CCCCCCCCHHHCCCHHHHHHHHHHHCCC-EEEECCCCCCCCCCCCCCCC-HHHHHHHHHHCCC
T ss_conf 5767-------------7766664111317999999999996989-87000375356759998578-9999999986399
Q ss_pred CEEEEEEECCCHHHHHHHHHH
Q ss_conf 288999705872489999999
Q gi|254781050|r 207 ESIVMVGEIGGSAEEEAAQFL 227 (300)
Q Consensus 207 ~~Ivl~gEiGG~~E~~aa~fi 227 (300)
- .||.|=- |..+++..+.+
T Consensus 204 P-LVLHGgS-G~~~e~i~~ai 222 (284)
T PRK12737 204 P-LVLHGAS-GVPDEDVKKAI 222 (284)
T ss_pred C-EEEECCC-CCCHHHHHHHH
T ss_conf 9-8966899-99999999999
No 465
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=25.17 E-value=50 Score=14.07 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=11.6
Q ss_pred CCCCEEEEE-ECCCHHHHHHHHHHHCC
Q ss_conf 778679998-05414789999999719
Q gi|254781050|r 149 RKGSVGILS-RSGTLTYEAVFQTSQEG 174 (300)
Q Consensus 149 ~pG~VgivS-qSG~l~~e~~~~~~~~g 174 (300)
+||.--+|. -+|+++..++..+...|
T Consensus 161 ~~g~~VlI~Ga~G~vG~~aiqlak~~G 187 (332)
T PRK13771 161 SEGETVLVTGAGGGVGIHAVQVAKAYG 187 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 999999997787758999999999869
No 466
>PRK07714 hypothetical protein; Provisional
Probab=25.10 E-value=51 Score=14.06 Aligned_cols=41 Identities=7% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 88999985399589980588468889999998401771894
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+.+++++..+-..+|++++-.++.-..++...|+.+++.++
T Consensus 24 ~~v~~~ik~~k~~LVilA~Das~~t~kk~~~~c~~y~Vp~~ 64 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMR 64 (100)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999598309999676687799999999850699789
No 467
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=25.06 E-value=51 Score=14.05 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=14.5
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHH
Q ss_conf 67717973999888843779999999
Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQA 28 (300)
Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~ 28 (300)
+++++|-+|+-+|.|.+.|+-|+...
T Consensus 24 Viv~~~g~Iis~g~~~~~g~~HAE~~ 49 (115)
T cd01284 24 VIVDDDGEIVGEGYHRKAGGPHAEVN 49 (115)
T ss_pred EEEECCCEEEEEEECCCCCCHHHHHH
T ss_conf 99917998999884798997409999
No 468
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=24.90 E-value=51 Score=14.04 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEE
Q ss_conf 67889999853995899805884688----89999998401771894068510135551000200112357786799980
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVL----DMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSR 158 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~----d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSq 158 (300)
-.+.+.+|+++|...+++=.+..|.. ..++++++|+..|+.+=+= +|. +++. .. ++.+.
T Consensus 97 ~~e~i~~ai~~GFtSVM~DgS~lp~eeNI~~Tk~vv~~Ah~~gv~VEaE--lG~----------igG~---ed--~~~~~ 159 (321)
T PRK07084 97 SFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGE--LGV----------LAGI---ED--EVSAE 159 (321)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EEC----------CCCC---CC--CCCCC
T ss_conf 9999999998099879963997999999999999999972639969997--503----------4675---66--76664
Q ss_pred CCCHH--HHHHHHHHHCCCCEEEEEECCC
Q ss_conf 54147--8999999971995167640556
Q gi|254781050|r 159 SGTLT--YEAVFQTSQEGLGQSTAVGIGG 185 (300)
Q Consensus 159 SG~l~--~e~~~~~~~~g~G~S~~VsiG~ 185 (300)
...+| -++.....+.|+- +..|++||
T Consensus 160 ~~~yT~Peea~~Fv~~TgvD-~LAvaiGt 187 (321)
T PRK07084 160 HHTYTQPEEVEDFVTKTGVD-SLAISIGT 187 (321)
T ss_pred CHHCCCHHHHHHHHHHHCCC-EEEEECCH
T ss_conf 02059999999999986998-58642010
No 469
>pfam01936 DUF88 Protein of unknown function DUF88. This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs).
Probab=24.87 E-value=51 Score=14.03 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=6.8
Q ss_pred HHHHHHHHCCCCCCEEEE
Q ss_conf 999999973998728899
Q gi|254781050|r 194 IDVLELFLADEATESIVM 211 (300)
Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl 211 (300)
.|++++..+++ -+.+++
T Consensus 79 vD~~~~~~~~~-~d~~il 95 (140)
T pfam01936 79 VDALELAYDNN-PDTFVL 95 (140)
T ss_pred HHHHHHHHCCC-CCEEEE
T ss_conf 99999973389-998999
No 470
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=51 Score=14.03 Aligned_cols=89 Identities=20% Similarity=0.381 Sum_probs=53.7
Q ss_pred CCEEEEECCCCCHHHHH----HHHHHHHCCCCEEEECCC-------CEEECCCCHHCCEEC------CCCCCCCCEEEEE
Q ss_conf 95899805884688899----999984017718940685-------101355510002001------1235778679998
Q gi|254781050|r 95 IPLIVCITEGIPVLDMV----RVKARLEKSSSRLIGPNC-------PGILTPDSCKIGIMP------GSIFRKGSVGILS 157 (300)
Q Consensus 95 ik~iviiteGip~~d~~----~l~~~A~~~g~riiGPNc-------~Gii~p~~~~lgi~p------~~~~~pG~VgivS 157 (300)
.-..+++.||+|..|.. .+.+.|++.|+.|++-.| -.++. +..-+|+.. ..-.+||..=++|
T Consensus 92 l~~~lil~eg~~~e~l~~i~~si~e~a~~~Gv~IvtGdTkV~~~~~~~~vi-~tT~iG~~~~~~~v~~~~~~~GD~vI~t 170 (339)
T COG0309 92 LSVGLILPEGLPIEDLERILKSIDEEAEEAGVSIVTGDTKVVPGGKDPIVI-NTTGIGIIDKEILVSPSGARPGDAVIVT 170 (339)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCCEE-EEEEEEEECCCCCCCCCCCCCCCEEEEC
T ss_conf 267773589998789999999999999983974982676661599877289-8646775137760145789988889981
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 054147899999997199516764055674
Q gi|254781050|r 158 RSGTLTYEAVFQTSQEGLGQSTAVGIGGDP 187 (300)
Q Consensus 158 qSG~l~~e~~~~~~~~g~G~S~~VsiG~D~ 187 (300)
|+.+.+-+..++.+ .|+..--.++.|.
T Consensus 171 --g~~g~hga~ila~~-~~~~l~~~l~sD~ 197 (339)
T COG0309 171 --GTIGIHGASILAHR-FGEELETELGSDC 197 (339)
T ss_pred --CCHHHHHHHHHHHH-CCHHHCCCHHHHH
T ss_conf --88168899999875-2022033235667
No 471
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase; InterPro: IPR011282 This entry represents a narrowly defined clade of animal and bacterial (almost exclusively proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homologue from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.; GO: 0008890 glycine C-acetyltransferase activity.
Probab=24.82 E-value=51 Score=14.03 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHCCCCEEEECCC--CEEECC-CC---HHCCEECCCCCCCCCEE
Q ss_conf 89999853995899805884-----688899999984017718940685--101355-51---00020011235778679
Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGI-----PVLDMVRVKARLEKSSSRLIGPNC--PGILTP-DS---CKIGIMPGSIFRKGSVG 154 (300)
Q Consensus 86 ai~Ea~~agik~iviiteGi-----p~~d~~~l~~~A~~~g~riiGPNc--~Gii~p-~~---~~lgi~p~~~~~pG~Vg 154 (300)
-..||-+.|.|...|.|+|+ -+..+.++..+|++|+..|.==.| .|++=| |+ -..|.| |.|-
T Consensus 162 ~L~~A~~~Gar~~Li~tDGvFSMDG~iA~L~~i~~LA~~Y~ALv~~DecHA~GflG~~GRG~~E~~gv~-------g~vd 234 (395)
T TIGR01822 162 QLKEAQAAGARHRLIATDGVFSMDGTIAPLDEICDLADKYDALVMVDECHATGFLGATGRGTAELLGVM-------GRVD 234 (395)
T ss_pred HHHHHHHCCCCEEEEEECCEEECCCCEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCC-------CCEE
T ss_conf 999999738958998646602068731076789999985598788744334233278998614213767-------5257
Q ss_pred EE---------EECCCHHH---HHHHHHHHCC--CCEEEEEE
Q ss_conf 99---------80541478---9999999719--95167640
Q gi|254781050|r 155 IL---------SRSGTLTY---EAVFQTSQEG--LGQSTAVG 182 (300)
Q Consensus 155 iv---------SqSG~l~~---e~~~~~~~~g--~G~S~~Vs 182 (300)
++ --||+.|+ |++.||+|+. +=||-.+.
T Consensus 235 I~tgTLGKAlGGA~GGfTta~~evv~lLRQRsRPYLFSNslp 276 (395)
T TIGR01822 235 IITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLP 276 (395)
T ss_pred EEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCC
T ss_conf 740543345114567643774679998531265110004630
No 472
>PRK00035 hemH ferrochelatase; Reviewed
Probab=24.72 E-value=51 Score=14.01 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 63688621204567889999853995899805
Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCIT 102 (300)
Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviit 102 (300)
+..+.-+-+| ++.|++.+..+.|++-++++.
T Consensus 95 V~~amry~~P-~i~~~l~~l~~~g~~~ii~lP 125 (325)
T PRK00035 95 VYLGMRYGEP-SIEDAVEQLKADGVDRIVVLP 125 (325)
T ss_pred EEEEEECCCC-CHHHHHHHHHHCCCCEEEEEE
T ss_conf 9987546899-778999999857985599997
No 473
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=24.70 E-value=52 Score=14.01 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=26.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 39998888437799999998626981899765
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH 41 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~ 41 (300)
||+|-|.+|--|+.-+++.++. |..|++--+
T Consensus 2 kvLVTGg~GFIGs~l~~~Ll~~-g~~V~~~d~ 32 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN 32 (338)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf 1999898767999999999978-498999988
No 474
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.68 E-value=52 Score=14.01 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCCCCEEEEE
Q ss_conf 9999999739987288999
Q gi|254781050|r 194 IDVLELFLADEATESIVMV 212 (300)
Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~ 212 (300)
.|+++...+ +.-+.++|+
T Consensus 89 ~D~~~~a~~-~~~D~~vLv 106 (149)
T cd06167 89 IDALELAYK-RRIDTIVLV 106 (149)
T ss_pred HHHHHHHHC-CCCCEEEEE
T ss_conf 999999613-899989999
No 475
>KOG2774 consensus
Probab=24.68 E-value=52 Score=14.01 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=102.8
Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCC-CEEE--EECCC----CCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC
Q ss_conf 17973999888843779999999862698-1899--76589----98868727745775314078503578863688621
Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQT-QVVG--GIHPK----KGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYV 78 (300)
Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt-~iva--gV~Pg----kgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V 78 (300)
.+..||++-|--|..|.--+......+|. +|.- -+-|- ..|-+.. .+|--|+++.|.+-.+.+|--+-|-
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy---~DILD~K~L~eIVVn~RIdWL~HfS 118 (366)
T KOG2774 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIY---LDILDQKSLEEIVVNKRIDWLVHFS 118 (366)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCCCCEEE---HHHHCCCCHHHHHHCCEEEEEEHHH
T ss_conf 7898588845536776889999999847763760103588554325687543---2454201478875345110211199
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEE
Q ss_conf 204567889999-853995899805-884688899999984017718940685101355510002001123577867999
Q gi|254781050|r 79 PPSGAGDAIIES-IEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGIL 156 (300)
Q Consensus 79 P~~~v~dai~Ea-~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~Vgiv 156 (300)
|.+-| .+..+++++-+- +| .-.+++.|++++.++.=|.+.|-.-|..-+.-...-.+-+|-.|==|
T Consensus 119 -------ALLSAvGE~NVpLA~~VNI~G-----vHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGV 186 (366)
T KOG2774 119 -------ALLSAVGETNVPLALQVNIRG-----VHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGV 186 (366)
T ss_pred -------HHHHHHCCCCCCCEEEECCHH-----HHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEEECH
T ss_conf -------999875115774135651043-----66899999870736860243345689999998998132267312033
Q ss_pred EECCCHHHHHHHHHHHCCCCE-------EEEEEC---CC---CCCCCCCHHHHHHH----HHCCCCCCEEEEEEE
Q ss_conf 805414789999999719951-------676405---56---74467899999999----973998728899970
Q gi|254781050|r 157 SRSGTLTYEAVFQTSQEGLGQ-------STAVGI---GG---DPVKGTEFIDVLEL----FLADEATESIVMVGE 214 (300)
Q Consensus 157 SqSG~l~~e~~~~~~~~g~G~-------S~~Vsi---G~---D~~~G~~~~d~L~~----~~~Dp~T~~Ivl~gE 214 (300)
|+--+ |++...-...+|. --.+|. || | +.-..|-|.++- .---|+|+.=+||-|
T Consensus 187 SKVHA---EL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttd-ya~A~f~~Al~~gk~tCylrpdtrlpmmy~~ 257 (366)
T KOG2774 187 SKVHA---ELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTD-YAIAIFYDALQKGKHTCYLRPDTRLPMMYDT 257 (366)
T ss_pred HHHHH---HHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 58899---99999988650754000247751026899998531-1455307888658866554777657400158
No 476
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.64 E-value=52 Score=14.00 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHCCCCEEEEC
Q ss_conf 277457753140785035788636886212045678899998539958998058846--888999999840177189406
Q gi|254781050|r 50 TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIP--VLDMVRVKARLEKSSSRLIGP 127 (300)
Q Consensus 50 ~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip--~~d~~~l~~~A~~~g~riiGP 127 (300)
.|+.+++|||..+.-..+...+..++-.-++....+-+.++.+.|.+.+=+=. |.| ++|..++.++-+. +||
T Consensus 112 ~gK~~~~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-G~~~~~~D~~~v~~ir~~-----~g~ 185 (355)
T cd03321 112 LAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKI-GYPTADEDLAVVRSIRQA-----VGD 185 (355)
T ss_pred HHHHCCCCHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHH-----HCC
T ss_conf 99884993999908998750256236789999999999999975999899979-999989999999999997-----199
Q ss_pred CCCEEECCCCHHC---CEECCCCCCCCCEEEEEECCC-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 8510135551000---200112357786799980541-478999999971995167640556744678999999999739
Q gi|254781050|r 128 NCPGILTPDSCKI---GIMPGSIFRKGSVGILSRSGT-LTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLAD 203 (300)
Q Consensus 128 Nc~Gii~p~~~~l---gi~p~~~~~pG~VgivSqSG~-l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~D 203 (300)
++.=.+.+++.+- .+--.+.+.+=++-++=|-=. --.+-...+++. . +.-|..| +.. .+..|+.++++++
T Consensus 186 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~EqP~~~~d~~~~~~l~~~-~--~~pI~~~-E~~--~~~~~~~~~i~~~ 259 (355)
T cd03321 186 GVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEPTLQHDYEGHARIASA-L--RTPVQMG-ENW--LGPEEMFKALSAG 259 (355)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHC-C--CCCEEEC-CCC--CCHHHHHHHHHCC
T ss_conf 96597357567688999999997523057755378998899999999854-8--9999937-888--9999999999849
Q ss_pred CCCCEEEE-EEECCCHHHH
Q ss_conf 98728899-9705872489
Q gi|254781050|r 204 EATESIVM-VGEIGGSAEE 221 (300)
Q Consensus 204 p~T~~Ivl-~gEiGG~~E~ 221 (300)
-- +.+-+ +.-.||..|-
T Consensus 260 a~-d~~~~d~~~~GGit~~ 277 (355)
T cd03321 260 AC-DLVMPDLMKIGGVTGW 277 (355)
T ss_pred CC-CCCCCCCCEECCHHHH
T ss_conf 99-6103674520779999
No 477
>PRK08374 homoserine dehydrogenase; Provisional
Probab=24.59 E-value=52 Score=14.00 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=85.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHH----HCCCCE-EEEECCCCCCEE-------------ECCCCCCCC---CC-CCHHHHC
Q ss_conf 7399988884377999999986----269818-997658998868-------------727745775---31-4078503
Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAIL----YCQTQV-VGGIHPKKGSTY-------------WTGGNVNVP---VF-TTVAEAK 66 (300)
Q Consensus 9 t~vivqGitg~~g~~~~~~~~~----y~gt~i-vagV~Pgkgg~~-------------~~g~~~~iP---vy-~sv~ea~ 66 (300)
-||.+-|+ |.-|+-..+...+ | |.++ |.+|.-.++... ..++....+ ++ .+..+..
T Consensus 3 i~I~l~G~-G~VG~~~~~~L~~~~~~~-g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (316)
T PRK08374 3 VKVSLFGF-GTVGRALAEILAEKSRVF-GVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEIV 80 (316)
T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHH
T ss_conf 12999933-889999999999718872-9865999999556763456555665553320254344553012048989983
Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHHHHHCCCCEEEECCCCEEECCC--CHHCCE
Q ss_conf 57886368862120456788999985399589980588468--88999999840177189406851013555--100020
Q gi|254781050|r 67 ERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV--LDMVRVKARLEKSSSRLIGPNCPGILTPD--SCKIGI 142 (300)
Q Consensus 67 ~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~--~d~~~l~~~A~~~g~riiGPNc~Gii~p~--~~~lgi 142 (300)
.+.++|+-|=..+...+.+.+.+|+++|.. ++|..-.. +.-.+|.+.|++++..+.=--|.|-=.|= ..+-+.
T Consensus 81 ~~~~~dvvVd~t~~~~~~~~~~~al~~G~h---VVTANK~~lA~~~~eL~~~A~~~~~~~~yEasVggGiPiI~~lr~~l 157 (316)
T PRK08374 81 EEVDPDIVVDVSSWDEAHEWYLTALKEGKS---VVTSNKPPIANHYDELLNEANERNLGYFFEATVMAGTPIIGLLRENL 157 (316)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCCCC---EECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf 488999899879996999999999988992---99788699985199999999974984999534000203169998751
Q ss_pred ECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 011235778679998054147899999997199516764
Q gi|254781050|r 143 MPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV 181 (300)
Q Consensus 143 ~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V 181 (300)
...++ ..=-|++ |||+.|-+. .+ +.|.-|+.++
T Consensus 158 ~gd~I--~~i~GIl--NGT~NyILt-~m-e~g~~f~eal 190 (316)
T PRK08374 158 LGETI--ERIEAVV--NASTTFILT-RM-EKGKTFEEAL 190 (316)
T ss_pred CCCCC--CEEEEEE--ECCHHHHHH-HH-HCCCCHHHHH
T ss_conf 46886--3899999--470899999-99-7599899999
No 478
>pfam01888 CbiD CbiD. CbiD is essential for cobalamin biosynthesis in both S. typhimurium and B. megaterium, no functional role has been ascribed to the protein. The CbiD protein has a putative S-AdoMet binding site. It is possible that CbiD might have the same role as CobF in undertaking the C-1 methylation and deacylation reactions required during the ring contraction process.
Probab=24.59 E-value=52 Score=14.00 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=6.1
Q ss_pred CCEEEEECCC
Q ss_conf 8189976589
Q gi|254781050|r 34 TQVVGGIHPK 43 (300)
Q Consensus 34 t~ivagV~Pg 43 (300)
.+-|--.+|.
T Consensus 31 ~~~V~i~lP~ 40 (261)
T pfam01888 31 PDKVTIETPS 40 (261)
T ss_pred CCEEEEECCC
T ss_conf 8679998899
No 479
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.58 E-value=52 Score=14.00 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=49.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEECCC-CCCCCCCCCH--HHHCCCCCCCEEEEECCHH-H--
Q ss_conf 39998888437799999998626981899765-89988687277-4577531407--8503578863688621204-5--
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH-PKKGSTYWTGG-NVNVPVFTTV--AEAKERTAANASVIYVPPS-G-- 82 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~-Pgkgg~~~~g~-~~~iPvy~sv--~ea~~~~~~D~avI~VP~~-~-- 82 (300)
|+-+.|.+|+.|+.-.+....+ |..|+|-|. |.|--.. .+. .+.--+|+-- ++... +.|+-|-.+-+. .
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~-~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~~~~ 77 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAAR-QGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGASDN 77 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHC-CCEEEEEEECHHHCCCC-CCCEEECCCCCCHHHHHHHHC--CCCEEEEECCCCCCCH
T ss_conf 0789953745679999999867-98048998076766522-353020002227456676635--8766997215788871
Q ss_pred ------HHHHHHHHHHC-CCCEEEEE
Q ss_conf ------67889999853-99589980
Q gi|254781050|r 83 ------AGDAIIESIEA-EIPLIVCI 101 (300)
Q Consensus 83 ------v~dai~Ea~~a-gik~ivii 101 (300)
..+++.+.+.. |++.+.++
T Consensus 78 ~~~~~k~~~~li~~l~~agv~RllVV 103 (211)
T COG2910 78 DELHSKSIEALIEALKGAGVPRLLVV 103 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 57788899999999861597059998
No 480
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=24.52 E-value=52 Score=13.99 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 467899999999973998728899970587248999999998642267552689984
Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVA 244 (300)
Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~ 244 (300)
|+|.-+.|+-+.+.+|..-+.. + ..+++.++.++. .-....||||+|..
T Consensus 55 IPGA~~~d~~~~ld~~~~~~~~-l------p~~~~f~~~~~~-lGI~~~~~vVvycg 103 (138)
T cd01445 55 IPGASFFDFEECLDEAGFEESM-E------PSEAEFAAMFEA-KGIDLDKHLIATDG 103 (138)
T ss_pred CCCCCCCCHHHHHCCCCCCCCC-C------CCHHHHHHHHHH-CCCCCCCCEEEEEC
T ss_conf 7997225889961789997888-8------899999999998-29998980899838
No 481
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.49 E-value=52 Score=13.99 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCEEEE-EECCCHHHHHHHHHHHCCCCE------EEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
Q ss_conf 7867999-805414789999999719951------676405567446789999999997399872889997058724899
Q gi|254781050|r 150 KGSVGIL-SRSGTLTYEAVFQTSQEGLGQ------STAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEE 222 (300)
Q Consensus 150 pG~Vgiv-SqSG~l~~e~~~~~~~~g~G~------S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~ 222 (300)
|=+||+| |.+|+--..+...+.++.-++ +.+=|-+... +.++.|+.+..+++-++|++. =||-+.+|
T Consensus 135 P~~IgvITS~tgAa~~Di~~~~~~R~p~~~i~l~p~~VQG~~A~~----~I~~ai~~~~~~~~~DvIIi~--RGGGS~eD 208 (443)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLSRRFPSVEVIIYPTLVQGEGAAA----SIVEAIERANARGEVDVLIVA--RGGGSLED 208 (443)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH----HHHHHHHHHHHHCCCCEEEEE--CCCCCHHH
T ss_conf 557999836843899999999850499659999814562654799----999999998522488889993--68788889
Q ss_pred HHHHHHHHHHCCC---CCCEEE
Q ss_conf 9999998642267---552689
Q gi|254781050|r 223 AAQFLKDEAKRGR---KKPIVG 241 (300)
Q Consensus 223 aa~fi~~~~~~~~---~KPVva 241 (300)
..-|=.+...++. +.|||.
T Consensus 209 L~~FNdE~varaI~~s~iPVIS 230 (443)
T PRK00286 209 LWAFNDEAVARAIAASKIPVIS 230 (443)
T ss_pred HHHCCCHHHHHHHHHCCCCEEE
T ss_conf 7651879999999848997895
No 482
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=24.41 E-value=52 Score=13.98 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEECCCCCCCCCC------CCHHHHCCCCCCCEEEEECCH--
Q ss_conf 399988884377999999986269818997-65899886872774577531------407850357886368862120--
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGG-IHPKKGSTYWTGGNVNVPVF------TTVAEAKERTAANASVIYVPP-- 80 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivag-V~Pgkgg~~~~g~~~~iPvy------~sv~ea~~~~~~D~avI~VP~-- 80 (300)
+|+|-|.-++.+-..+-+...+ ++.|++. .+|.--|..+..+..-+|.. +.+.+..+++++|+-+-..-+
T Consensus 3 nILvt~~G~~~~ii~~lk~~~~-~~~Vi~~D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~id~iiP~~d~El 81 (325)
T PRK12767 3 NILVTSAGRRVQLVKALKKSLL-GGKVIGADISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENIDALIPLIDPEL 81 (325)
T ss_pred EEEEECCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHH
T ss_conf 8999867868999999997699-859999689989953445488998788898789999999999879999997785026
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHCCCCEE
Q ss_conf 456788999985399589980588468-88999999840177189
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPV-LDMVRVKARLEKSSSRL 124 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~-~d~~~l~~~A~~~g~ri 124 (300)
........+..+.|++.++-=.|-+-. .|=.+..+.+++.|+..
T Consensus 82 ~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~ 126 (325)
T PRK12767 82 PLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINT 126 (325)
T ss_pred HHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
T ss_conf 689999999996799895697999998549999999999759998
No 483
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=24.37 E-value=52 Score=13.97 Aligned_cols=118 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH--CCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 9999999719951676405567446789999999997--3998728899970-587248999999998642267552689
Q gi|254781050|r 165 EAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFL--ADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVG 241 (300)
Q Consensus 165 e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~--~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva 241 (300)
+++..+..+ |+...|.+++.. .....+|+.+. -.+.-+.++--.+ .-+...-+. |+++..+.+...|=-+
T Consensus 94 elL~~L~~~--gi~~av~T~~~~---~~~~~~l~~~g~~~~~~fd~vv~~~dv~~~KP~Pd~--~l~a~~~lg~~~~~~~ 166 (220)
T TIGR03351 94 EAFRSLRSS--GIKVALTTGFDR---DTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDL--ILRAMELTGVQDVQSV 166 (220)
T ss_pred HHHHHHHHC--CCCEEEECCCCH---HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHH--HHHHHHHHCCCCCCCE
T ss_conf 999999987--997766359977---999999998276404322404563435667987899--9999999588964331
Q ss_pred EEEEEC---CCCCCCCCEEEEE-CCCCCCCHHHHHHHHHHCCC-EECCCHHHHHHHH
Q ss_conf 984301---5765532200112-24888899999999998897-5788989999999
Q gi|254781050|r 242 FVAGKT---APPGRTMGHAGAV-ISGGKGGAEDKINAMKEAGI-CIAPSPARIGRSL 293 (300)
Q Consensus 242 ~~~Grt---Ap~g~~~gHaGAi-~~~~~g~a~~k~~al~~aGv-~v~~s~~el~~~l 293 (300)
++.|-| ...+++.|=.-.+ +..+..+.+. |+++|. .+++++.||+.+|
T Consensus 167 ~vigDs~~di~aA~~AG~~~~igv~~G~~~~~~----L~~~gad~v~~~~~eL~~~l 219 (220)
T TIGR03351 167 AVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEE----LSRHPHTHVLDSVADLPALL 219 (220)
T ss_pred EECCCCHHHHHHHHHCCCCEEEEEECCCCCHHH----HHHCCCCEEECCHHHHHHHH
T ss_conf 353787889999998599879998389999999----98789999999999998865
No 484
>KOG0023 consensus
Probab=24.30 E-value=52 Score=13.96 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300)
+|-|-|+-| .|++-.++..+. |+.|++-=+..+ .=+||.+.-++|.=+++.--+.--.++++
T Consensus 184 ~vgI~GlGG-LGh~aVq~AKAM-G~rV~vis~~~~----------------kkeea~~~LGAd~fv~~~~d~d~~~~~~~ 245 (360)
T KOG0023 184 WVGIVGLGG-LGHMAVQYAKAM-GMRVTVISTSSK----------------KKEEAIKSLGADVFVDSTEDPDIMKAIMK 245 (360)
T ss_pred EEEEECCCC-CCHHHHHHHHHH-CCEEEEEECCCH----------------HHHHHHHHCCCCEEEEECCCHHHHHHHHH
T ss_conf 898855764-016899999870-867999927853----------------48999985496215884278789999987
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 985399589980588468889999998401771894
Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+.+-++..+.-+ ..+.+..+.++.|..|..+.
T Consensus 246 ~~dg~~~~v~~~----a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023 246 TTDGGIDTVSNL----AEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred HHCCCCEEEEEC----CCCCHHHHHHHHCCCCEEEE
T ss_conf 526750232102----32443888876103978999
No 485
>PRK08507 prephenate dehydrogenase; Validated
Probab=24.24 E-value=53 Score=13.96 Aligned_cols=107 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300)
||.|.|. |--|..-+....+++--.-|.|+.+.+......-+ .-+.+.+.+..+-.++|+-++++|...+.+.+.+
T Consensus 2 ~I~IiGl-GLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~---~g~id~~~~~~~i~~aDlVila~Pv~~~~~~l~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKENKLISCVYGYDHNEEHEKDALD---LGLVDEIVEFEEIKECDVIFLAIPVDAIIEILQK 77 (275)
T ss_pred EEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH---CCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 8999900-87899999999950998679999599999999998---6998610673123657989991769999999999
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9853995899805884688899999984017
Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120 (300)
Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~ 120 (300)
...-.-+.++.=...+...-...+.+..+..
T Consensus 78 l~~l~~~~iitDv~SvK~~i~~~~~~~~~~~ 108 (275)
T PRK08507 78 LLDIKENTTIIDLGSTKAKIIESIPKSIRKN 108 (275)
T ss_pred HHHCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 8604678889834312899999998625688
No 486
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.20 E-value=53 Score=13.95 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCEEE
Q ss_conf 8889999998401771894
Q gi|254781050|r 107 VLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 107 ~~d~~~l~~~A~~~g~rii 125 (300)
..|.++|+++|+++|++||
T Consensus 69 ~~d~~eiv~yA~~rgI~vi 87 (348)
T cd06562 69 PEDVKEIVEYARLRGIRVI 87 (348)
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999997598896
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=24.19 E-value=53 Score=13.95 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 86799980541478999999971995167640556744678999999999739987288999705872489999999986
Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDE 230 (300)
Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~ 230 (300)
.++++++-||.--+.++.++.+.. ++.+..+|+++|| .-.+..+|++..
T Consensus 165 QR~gIfagsGvGKs~Ll~~i~~~~---------------------------~~adv~V~~lIGe----RgrEv~efie~~ 213 (442)
T PRK06315 165 QRIGIFAGAGVGKSSLLGMIARNA---------------------------EEADVNVIALIGE----RGREVREFIEGD 213 (442)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHH---------------------------CCCCCEEEEEECC----CCHHHHHHHHHH
T ss_conf 776403899998889999999744---------------------------0389349999551----137999999975
Q ss_pred HHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC---CEECCCHHHHHHHHHHH
Q ss_conf 4226755268998430157655322001122488889999999999889---75788989999999999
Q gi|254781050|r 231 AKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAG---ICIAPSPARIGRSLVEL 296 (300)
Q Consensus 231 ~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aG---v~v~~s~~el~~~l~~~ 296 (300)
.....-|--+.+.+-...|+..|+ -.+.+ +++-+ +.||+.| ..+.||+.-.....+++
T Consensus 214 ~~~~~l~rsvvV~atsd~p~~~R~--~a~~~----A~aiA--EyFrd~G~~VLl~~DslTR~A~A~REi 274 (442)
T PRK06315 214 LGEEGMKRSVIVVSTSDQSSQLRL--NAAYV----GTAIA--EYFRDQGKTVVLMMDSVTRFARALREV 274 (442)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHH--HHHHH----HHHHH--HHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 201452133999617999878875--55887----77899--999868994899943702888899999
No 488
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=24.16 E-value=53 Score=13.95 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 999985399589980588468889999998401771894
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
+.+|.++|+..+++. ..|.....++.+.++++|+.+|
T Consensus 107 ~~~~~~~GvdGvIip--DLP~eE~~~~~~~~~~~~l~~I 143 (258)
T pfam00290 107 YAQAAEAGVDGLIIP--DLPPEEADPLREAAEKHGIDLI 143 (258)
T ss_pred HHHHHHCCCCEEECC--CCCHHHHHHHHHHHHHCCCCEE
T ss_conf 999997599778707--9998899999999984584358
No 489
>PRK13123 consensus
Probab=23.93 E-value=53 Score=13.92 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC---CEEEECCCC
Q ss_conf 99998539958998058846888999999840177---189406851
Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS---SRLIGPNCP 130 (300)
Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g---~riiGPNc~ 130 (300)
+.+|.++|+..++| -..|.....++.+.++++| +.++-|++.
T Consensus 110 ~~~~~~~GvdGvIi--pDLP~eE~~~~~~~~~~~gi~~I~liaPtt~ 154 (256)
T PRK13123 110 VEDLAETGVKGLII--PDLPYEHQDFIAPLLRDTDIALIPLVSLTSP 154 (256)
T ss_pred HHHHHHCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99999749978973--7999678999999999769977864089993
No 490
>pfam02829 3H 3H domain. This domain is predicted to be a small molecule binding domain, based on its occurrence with other domains. The domain is named after its three conserved histidine residues.
Probab=23.78 E-value=44 Score=14.47 Aligned_cols=62 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred EEEECCC----HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 9970587----24899999999864226755268998430157655322001122488889999999999889757
Q gi|254781050|r 211 MVGEIGG----SAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICI 282 (300)
Q Consensus 211 l~gEiGG----~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v 282 (300)
+||||-| ....+..+|++. .+....+|.-.+-.|. |.=.+...+..+-+.-+++|++.|..+
T Consensus 33 ~YG~i~~~L~I~sr~Dv~~F~~~-l~~~~~~~L~~LT~Gv---------H~HtI~a~~ee~l~~I~~~L~~~G~Lv 98 (98)
T pfam02829 33 VYGEITASLNISSRDDVDKFMKK-LESSKAKPLSELTGGV---------HLHTIEAPDEESLDKIEEALRKKGFLI 98 (98)
T ss_pred CCCEEEEEEECCCHHHHHHHHHH-HHHCCCCCHHHHCCCE---------EEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 98268999863889999999999-8616973178861987---------569998699999999999999879869
No 491
>PRK09875 putative hydrolase; Provisional
Probab=23.74 E-value=54 Score=13.90 Aligned_cols=45 Identities=2% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 456788999985399589980588468889999998401771894
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300)
..+.+-+.++.++|++.+|=.|-.-=-+|...+++++++.|+.||
T Consensus 34 ~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~IV 78 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 999999999998099979977887768599999999997299099
No 492
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=23.63 E-value=54 Score=13.88 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=0.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEE---CCHHHHHHHH
Q ss_conf 9998888437799999998626981899765899886872774577531407850357886368862---1204567889
Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIY---VPPSGAGDAI 87 (300)
Q Consensus 11 vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~---VP~~~v~dai 87 (300)
|+|-|-+|--|+.-.++..+. |.+|++ +.....++--+..+.+..+...+|+-+-+ ..+..+..--
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~-g~~v~~----------~~r~~~D~~d~~~l~~~~~~~~pd~VihlAa~~~~~~~~~~~ 69 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAER-GVEVVA----------LDRPELDLTDPEAVAALVREARPDVVVNAAAYTAVDKAESEP 69 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCEEEE----------ECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCH
T ss_conf 699648998999999999868-998999----------548625788999999999864997999724135556777488
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE
Q ss_conf 9998539958998058846888999999840177189406851013
Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300)
Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300)
..+.+..+. -.+.|.+.|++.++|+|=..+-.++
T Consensus 70 ~~~~~~Nv~------------~t~~l~~~~~~~~~~~i~~Ss~~Vy 103 (284)
T pfam04321 70 ELAYAVNAL------------GPGNLAEACAARGAPLIHISTDYVF 103 (284)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 889987599------------9999999987449857984175300
No 493
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=23.57 E-value=54 Score=13.87 Aligned_cols=111 Identities=12% Similarity=0.214 Sum_probs=0.0
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEEC---CCCCH-HHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCC
Q ss_conf 3688621204567889999853995899805---88468-8899999984017718940685101355510002001123
Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCIT---EGIPV-LDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSI 147 (300)
Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviit---eGip~-~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~ 147 (300)
++.++.+=|-.-++.+.-+++.+.+.+|+-+ .++|. ......++.|.+.|+.+ ++..+|.-|-.....
T Consensus 211 ~V~~v~~~pG~~~~~l~~~l~~~~~giVl~~~G~Gn~P~~~~~~~~l~~a~~~gi~V--------V~~Sqc~~G~v~~~~ 282 (335)
T PRK09461 211 PIGVVTIYPGISAEVVRNFLRQPVKALILLSYGVGNAPQNPALLQELKEASERGIVV--------VNLTQCMSGKVNMGG 282 (335)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEE--------EEECCCCCCCCCCCC
T ss_conf 479999589999999999985799889994034788988878999999998669789--------994476767407665
Q ss_pred CCCCCE----EEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCC
Q ss_conf 577867----99980541478999999971995167640556744678999999999739
Q gi|254781050|r 148 FRKGSV----GILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLAD 203 (300)
Q Consensus 148 ~~pG~V----givSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~D 203 (300)
|..|.- |+|+ .|-|+.|.+...-..-+++. .+..++-++|+.|
T Consensus 283 Y~~G~~l~~~GvI~-g~dmt~eaA~~KL~~~L~~~------------~~~~~i~~~~~~n 329 (335)
T PRK09461 283 YATGNALAHAGVIS-GADMTVEAALTKLHYLLSQE------------LSTEEIRKAMQQN 329 (335)
T ss_pred CCCHHHHHHCCEEE-CCCCCHHHHHHHHHHHHCCC------------CCHHHHHHHHHCC
T ss_conf 41068898699898-99999999999999997499------------9999999997424
No 494
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=23.54 E-value=54 Score=13.87 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC--CCEE-EEECCCCCCCHHHHHHHHHHC--CCEEC
Q ss_conf 899970587248999999998642267552689984301576553--2200-112248888999999999988--97578
Q gi|254781050|r 209 IVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRT--MGHA-GAVISGGKGGAEDKINAMKEA--GICIA 283 (300)
Q Consensus 209 Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~--~gHa-GAi~~~~~g~a~~k~~al~~a--Gv~v~ 283 (300)
|++.|| -|+--+..|++|-.........-|.+=++..+...--+ |||- |+.. +........|++| |-..-
T Consensus 32 VLI~GE-~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~----~~~~~~~g~le~a~gGTL~L 106 (325)
T PRK11608 32 VLIIGE-RGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT----GAQKRHPGRFERADGGTLFL 106 (325)
T ss_pred EEEECC-CCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC----CCCCCCCCHHHCCCCCEEEE
T ss_conf 898898-9837999999999658867999778877989977889987277556767----75324687343568986997
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89899999999998
Q gi|254781050|r 284 PSPARIGRSLVELL 297 (300)
Q Consensus 284 ~s~~el~~~l~~~l 297 (300)
+.+++++..+.+.|
T Consensus 107 ~eI~~l~~~~Q~~L 120 (325)
T PRK11608 107 DELATAPMLVQEKL 120 (325)
T ss_pred ECHHHCCHHHHHHH
T ss_conf 37454799999999
No 495
>PRK08198 threonine dehydratase; Provisional
Probab=23.51 E-value=54 Score=13.87 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCH
Q ss_conf 14078503578863688621204567889999853995899805884688899999984017718940685101355510
Q gi|254781050|r 59 FTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSC 138 (300)
Q Consensus 59 y~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~ 138 (300)
||.+....++....--|-+--.-++...+.-|-..|++..|+..+..|..-...++.+ ...+++.|++.---..--..
T Consensus 60 ~n~i~~L~~e~~~~GVVaaSaGNHaqgvA~aa~~~gi~a~IvmP~~ap~~Ki~~~r~~--GA~Vil~G~~~~ea~~~A~~ 137 (406)
T PRK08198 60 YNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVQATKSY--GAEVVLHGDVYDEALAAALE 137 (406)
T ss_pred HHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCCHHHHHHHHHH
T ss_conf 9999837976606857997787699999999998199889993677889999999847--98899969986899999999
Q ss_pred HCCEECCCCCCC-CCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 002001123577-8679998054147899999997199516764055674467899999999973998728899970587
Q gi|254781050|r 139 KIGIMPGSIFRK-GSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGG 217 (300)
Q Consensus 139 ~lgi~p~~~~~p-G~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG 217 (300)
..--....+..| -+.-++.=.||++.|++.++.... ..+|.+||--.+. -.+-+++.+ .|++++|-.--|
T Consensus 138 ~a~e~g~~~ihpfdd~~viaGqGTiglEileq~p~~D---~vvvpvGGGGLia-Gia~a~K~~--~P~ikViGVEpe--- 208 (406)
T PRK08198 138 LAEETGATFVHPFDDPDVIAGQGTIGLEILEDLPDVD---TVVVPIGGGGLIS-GVATAVKAL--RPNVRVIGVQAE--- 208 (406)
T ss_pred HHHHCCCEEECCCCCHHHHCCHHHHHHHHHHHCCCCC---EEEECCCCHHHHH-HHHHHHHHH--CCCCCEEEEEEC---
T ss_conf 9974386753898995466010149999998677778---7886378626889-999999986--899708999657---
Q ss_pred HHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 2489999999986422675526
Q gi|254781050|r 218 SAEEEAAQFLKDEAKRGRKKPI 239 (300)
Q Consensus 218 ~~E~~aa~fi~~~~~~~~~KPV 239 (300)
.++.+.++.++ .|||
T Consensus 209 ----~a~~~~~Sl~a---g~~v 223 (406)
T PRK08198 209 ----GAPAMPLSLAA---GRPV 223 (406)
T ss_pred ----CCHHHHHHHHC---CCCE
T ss_conf ----87689999984---9956
No 496
>PRK06801 hypothetical protein; Provisional
Probab=23.40 E-value=55 Score=13.85 Aligned_cols=43 Identities=5% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHCCCCEEEE
Q ss_conf 78899998539958998058846888----99999984017718940
Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLD----MVRVKARLEKSSSRLIG 126 (300)
Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d----~~~l~~~A~~~g~riiG 126 (300)
.+.+.+|+++|...+++=.+..|-.+ .++++++|+..|+.+=+
T Consensus 87 ~e~i~~ai~~Gf~SVM~DgS~l~~eeNi~~Tk~vve~ah~~gv~VEa 133 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEA 133 (286)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999829987997499899999999999999999884985999
No 497
>pfam02409 consensus
Probab=23.34 E-value=55 Score=13.85 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 621204567889999853995899805884
Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGI 105 (300)
Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGi 105 (300)
+.+-.++.-|.+.++++.|++++|+...|.
T Consensus 72 ~~~Rtr~~Dd~~~~a~~~Gi~QvViLgAGL 101 (107)
T pfam02409 72 LAVRTRFFDDFFLAALAAGIRQVVILGAGL 101 (107)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 214499999999999974998899956664
No 498
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=23.15 E-value=55 Score=13.82 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCC---CCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
Q ss_conf 39998888437799999998626981899765899886872774---577531407850357886368862120456788
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGN---VNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~---~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300)
||||.|--|||-..--+.... ...+-+-+.|+-.|..-.... .+.--++.+.+...+..+|+.||---.+.+...
T Consensus 4 kVLViGsGGREHAla~kl~~s--~~~~~~~~g~gn~g~~~~~~~~~~~~~~d~~~i~~~a~~~~idLvvvGPE~pL~~Gi 81 (435)
T PRK06395 4 KVMLVGSGGREDAIARAIKRS--GAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLATPL 81 (435)
T ss_pred EEEEECCCHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHCCH
T ss_conf 799988788999999998559--884499989996787762323465685699999999998499999989767886614
Q ss_pred HHHHHHCCCCEE
Q ss_conf 999985399589
Q gi|254781050|r 87 IIESIEAEIPLI 98 (300)
Q Consensus 87 i~Ea~~agik~i 98 (300)
+-+.-++|++..
T Consensus 82 ~D~l~~~gi~vF 93 (435)
T PRK06395 82 VNNLLKRGIKVA 93 (435)
T ss_pred HHHHHHCCCCEE
T ss_conf 559976899466
No 499
>PRK06460 hypothetical protein; Provisional
Probab=23.13 E-value=55 Score=13.82 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC---HHHHHHHHHHHHC
Q ss_conf 9988687277457753140785035788636886212045678899998539958998058846---8889999998401
Q gi|254781050|r 43 KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIP---VLDMVRVKARLEK 119 (300)
Q Consensus 43 gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip---~~d~~~l~~~A~~ 119 (300)
+.|...+-.+.+==|.|.-+.+-....++++. |+.+.. .+.+.+++....|++.+=|-+=| ..|..++.++|++
T Consensus 82 ~~Gdhiv~~~~~Yg~t~~l~~~~l~~~Gv~v~--~~d~~~-~~~~~~~~~~~Tklv~~EspsNP~l~v~Di~~i~~ia~~ 158 (375)
T PRK06460 82 KPGSSVLIHRDMFGRSYRFFTDFLRNWGVKVE--VARPGE-ENILEKIKNKRYDVVFVETISNPLLRVIDIPELSKACKE 158 (375)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCEEEE--EECCCC-HHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 89998997178758679999999873786779--738999-999997347676089998899987640585899999987
Q ss_pred CCCEEEECCCCE
Q ss_conf 771894068510
Q gi|254781050|r 120 SSSRLIGPNCPG 131 (300)
Q Consensus 120 ~g~riiGPNc~G 131 (300)
+|+.++==||..
T Consensus 159 ~gi~~vVDNT~a 170 (375)
T PRK06460 159 NGALLIVDSTFA 170 (375)
T ss_pred CCCEEEEECCCC
T ss_conf 499389756741
No 500
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=23.12 E-value=55 Score=13.82 Aligned_cols=153 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 27745775314078503578863688621204567889999853995899805884688899999984017718940685
Q gi|254781050|r 50 TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300)
Q Consensus 50 ~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300)
.|-..+.+.+.-+..+.++....--+..-...+......=|...|+|.++++.++.|......++.+ ...+..++.+-
T Consensus 44 tGS~KdR~a~~~i~~~~~~~~~~~vv~aSsGN~G~a~A~~aa~~G~~~~Ivvp~~~~~~k~~~i~~~--GAeVi~~~~~~ 121 (304)
T cd01562 44 TGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAY--GAEVVLYGEDF 121 (304)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHC--CCCEEEECCCH
T ss_conf 7783999999999998870745856996885999999999997299751028853289999999965--98389965851
Q ss_pred CEEECCCCHHCCEECCCCCCCCC-EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHC-CCCCC
Q ss_conf 10135551000200112357786-79998054147899999997199516764055674467899999999973-99872
Q gi|254781050|r 130 PGILTPDSCKIGIMPGSIFRKGS-VGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLA-DEATE 207 (300)
Q Consensus 130 ~Gii~p~~~~lgi~p~~~~~pG~-VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~-Dp~T~ 207 (300)
-..+.--.-..--.+.....+-+ --++---+++.+|+..++ +-=-..++++| .|.++.=+-.+|.+ .|+++
T Consensus 122 ~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~Ti~~EI~~q~---~~~D~vv~~vG----~Gg~~~Gi~~~lk~~~p~~k 194 (304)
T cd01562 122 DEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEILEQV---PDLDAVFVPVG----GGGLIAGIATAVKALSPNTK 194 (304)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCHHHHHHHHC---CCCCEEEECCC----CCHHHHHHHHHHHHHCCCCE
T ss_conf 899999999998639787588778768742211799999974---99987997258----61689999999997299998
Q ss_pred EEEE
Q ss_conf 8899
Q gi|254781050|r 208 SIVM 211 (300)
Q Consensus 208 ~Ivl 211 (300)
.|.+
T Consensus 195 ii~V 198 (304)
T cd01562 195 VIGV 198 (304)
T ss_pred EEEE
T ss_conf 9999
Done!