HHsearch results for GI: 254781050 and protein with PDBid: 1oi7_A
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=100.00 E-value=0 Score=566.74 Aligned_cols=287 Identities=53% Similarity=0.871 Sum_probs=272.2
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 67717973999888843779999999862698189976589988687277457753140785035788636886212045
Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
||+||+|||+|||+||++|++|+.+|++| |||+|+||||+|+|+++.| +|+|+||+|+++.+++|+++|+||+++
T Consensus 2 ~~~~~~~~v~v~g~tg~~~~~~~~~~~~~-g~~~v~gVnP~~~G~ev~G----~p~y~Sv~dlp~~~~vDlavi~vPa~~ 76 (288)
T 1oi7_A 2 ILVNRETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGMEVLG----VPVYDTVKEAVAHHEVDASIIFVPAPA 76 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHSCCSEEEECCCHHH
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCEEEEC----CCCCCCHHHHHCCCCCCEEEEECCHHH
T ss_conf 78459983999899784888999999980-9967998758988608879----423474777425778767999617899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCH
Q ss_conf 67889999853995899805884688899999984017718940685101355510002001123577867999805414
Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTL 162 (300)
Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l 162 (300)
++++++||+++|+|.++|+|+||+|.++++++++|+++|+|++||||+|+++|+..++++.+...++||+++++||||++
T Consensus 77 v~~~~~e~~~~Gvk~~vi~s~Gf~E~~~~~l~~~a~~~g~riiGPNc~Gi~n~~~~~~~~~~~~~~~~G~i~~iSqSG~~ 156 (288)
T 1oi7_A 77 AADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTL 156 (288)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCCEEEECCCCCCCCCCEEEEEECCHH
T ss_conf 99999999867998899955898744678897641257957887886633557644476358656889981169842137
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 78999999971995167640556744678999999999739987288999705872489999999986422675526899
Q gi|254781050|r 163 TYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGF 242 (300)
Q Consensus 163 ~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~ 242 (300)
+++++++++++|+|+|+++|+||++++++++.|+|+||++||+|++|+||+|.++..+. |+..+++...+||||++
T Consensus 157 ~~~~~~~~~~~g~g~s~~vs~Gn~a~vd~~~~d~l~~l~~D~~T~vI~ly~E~~~~~~~----f~~~~~~~~~kKpVV~~ 232 (288)
T 1oi7_A 157 TYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEE----EAAAWVKDHMKKPVVGF 232 (288)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHH----HHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHH----HHHHHHHHHCCCCEEEE
T ss_conf 99999999976988699971688765783299999997159997689999996888999----99999997357988999
Q ss_pred EEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf 84301576553220011224888899999999998897578898999999999984
Q gi|254781050|r 243 VAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 243 ~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
|+||+++.++++|||||+++++.|+++.+.++|||+||+++++++||.++++++|+
T Consensus 233 k~G~s~~~~~a~sHTgala~~~~G~~~~~~aaf~qaGVi~v~~~~el~d~ak~~Lg 288 (288)
T 1oi7_A 233 IGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKALG 288 (288)
T ss_dssp ESCC------------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHC
T ss_pred ECCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHC
T ss_conf 77643763335430544026788889999999997897585999999999999629