HHsearch results for GI: 254781050 and protein with PDBid: 3dmy_A
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12}
Probab=100.00 E-value=0 Score=354.89 Aligned_cols=198 Identities=21% Similarity=0.344 Sum_probs=171.5
Q ss_pred CCCCCCHHHHCCC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC
Q ss_conf 7531407850357-886368862120456788999985399589980588468889999998401771894068510135
Q gi|254781050|r 56 VPVFTTVAEAKER-TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300)
Q Consensus 56 iPvy~sv~ea~~~-~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300)
+|.|++..+|.+. +++|+++|+||+++|+++++||+++|++ ++|||+|||++|+++|+++|+++|+|++||||+|+++
T Consensus 21 ~~~~~~~~~a~~~~p~~dlavI~VP~~~v~~~~~ea~~~Gv~-~vi~s~gv~~~de~~l~~~A~~~G~rv~GPNC~G~i~ 99 (480)
T 3dmy_A 21 LTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMI 99 (480)
T ss_dssp CEEESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHHTTCCEECSSCCEEEE
T ss_pred CCCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 676551999973379999899970889999999999977996-9998498998999999999997799999899844535
Q ss_pred CCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 551000200112357786799980541478999999971995167640556744----6789999999997399872889
Q gi|254781050|r 135 PDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPV----KGTEFIDVLELFLADEATESIV 210 (300)
Q Consensus 135 p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~----~G~~~~d~L~~~~~Dp~T~~Iv 210 (300)
|+ .++.+.+.++||+||+|||||++++++++++.++|+|||++||+||+.+ .|+++.|+|+||++||+|++|+
T Consensus 100 ~~---~~l~f~~~~~~G~IgivSqSG~~~~~i~~~~~~~G~G~S~~vs~Gn~~~~~~v~gi~~~d~l~~l~~Dp~T~vIv 176 (480)
T 3dmy_A 100 AG---TPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLA 176 (480)
T ss_dssp TT---EEEESCCCCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEE
T ss_pred CC---CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 89---885336658998458996473699999999997499867999838976656536863999999970499960899
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCEEEEEC
Q ss_conf 9970587248999999998642267552689984301576553-22001122
Q gi|254781050|r 211 MVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRT-MGHAGAVI 261 (300)
Q Consensus 211 l~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~-~gHaGAi~ 261 (300)
||+|..+..+. |...+++...+||||+|++|||++..+. -+|+++..
T Consensus 177 l~~E~~~~~~~----~~~~~~a~~~~KPVV~~k~Grs~~~~~~a~shta~~l 224 (480)
T 3dmy_A 177 FVSKPPAEAVR----LKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSL 224 (480)
T ss_dssp EEESCCCHHHH----HHHHHHHHHHCSCEEEEETTCCCSSSEETTEEEESSH
T ss_pred EEEECCCCHHH----HHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHHHH
T ss_conf 99824886999----9999998618997899984688876311341013329