HHsearch results for GI: 254781050 and protein with PDBid: 3dmy_A
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12}
Probab=98.60 E-value=3.3e-05 Score=52.16 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=116.2
Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE----ECCCCEEECCCC---HHC--------CE--E--
Q ss_conf 78899998-5399589980588468889999998401771894----068510135551---000--------20--0--
Q gi|254781050|r 84 GDAIIESI-EAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI----GPNCPGILTPDS---CKI--------GI--M-- 143 (300)
Q Consensus 84 ~dai~Ea~-~agik~iviiteGip~~d~~~l~~~A~~~g~rii----GPNc~Gii~p~~---~~l--------gi--~-- 143 (300)
.|.+.... |-.++.++++.|++......+..+.++..+..+| |-+-.+.-..+. ..+ +. .
T Consensus 160 ~d~l~~l~~Dp~T~vIvl~~E~~~~~~~~~~~~~a~~~~KPVV~~k~Grs~~~~~~a~shta~~l~eaA~~a~~L~~~~~ 239 (480)
T 3dmy_A 160 LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTA 239 (480)
T ss_dssp HHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHHHHHHCSCEEEEETTCCCSSSEETTEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999970499960899998248869999999998618997899984688876311341013329999999876513765
Q ss_pred C-C--CCCCCCCEEEEEECCCHHHHHHHHHHHCCCC---------------EEEEEECCCCCCC-C--------CCHHHH
Q ss_conf 1-1--2357786799980541478999999971995---------------1676405567446-7--------899999
Q gi|254781050|r 144 P-G--SIFRKGSVGILSRSGTLTYEAVFQTSQEGLG---------------QSTAVGIGGDPVK-G--------TEFIDV 196 (300)
Q Consensus 144 p-~--~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G---------------~S~~VsiG~D~~~-G--------~~~~d~ 196 (300)
+ . .....+.+....-.|+|+++.+..+....-. ...++.+|+|.+. | ..+.+.
T Consensus 240 ~~~~~~~~~~~~i~gl~sGGtLa~ea~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~dlgdd~~T~GrphpmiDP~~r~~~ 319 (480)
T 3dmy_A 240 RRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQL 319 (480)
T ss_dssp HHHHHCCCSCCEEEEEESCHHHHHHHHHHHHHHTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHH
T ss_conf 31114554333202203621599998999886415677742000222047888642347625424686656586899999
Q ss_pred HHHHHCCCCCCEEEEEEECC-CHHH---HHHHHHHHH---HHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 99997399872889997058-7248---999999998---6422675526899843015765532200112248888999
Q gi|254781050|r 197 LELFLADEATESIVMVGEIG-GSAE---EEAAQFLKD---EAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE 269 (300)
Q Consensus 197 L~~~~~Dp~T~~Ivl~gEiG-G~~E---~~aa~fi~~---~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~ 269 (300)
|..+.+||++.+|+|..-+| |..+ ...++.+++ +++....||||++..|....+ -..+
T Consensus 320 l~~~~~Dp~v~vVLldvVlg~ga~~dpa~~l~~aI~~a~~a~~~~~~~~vVa~v~Gt~~dp---------------q~~~ 384 (480)
T 3dmy_A 320 IADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDP---------------QCRS 384 (480)
T ss_dssp HHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTST---------------TCHH
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---------------CCHH
T ss_conf 9998459987789996303576565728889999999998644289816999975777786---------------2479
Q ss_pred HHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf 99999998897578898999999999984
Q gi|254781050|r 270 DKINAMKEAGICIAPSPARIGRSLVELLG 298 (300)
Q Consensus 270 ~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300)
...++|++|||.+.+|+++-..+..+++.
T Consensus 385 ~~~~~L~~AGV~v~~S~~~A~r~a~~l~~ 413 (480)
T 3dmy_A 385 QQIATLEDAGIAVVSSLPEATLLAAALIH 413 (480)
T ss_dssp HHHHHHHHTTCEECSSHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCEEECCHHHHHHHHHHHHC
T ss_conf 99999997898342888999999999708