Query gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 300 No_of_seqs 215 out of 1763 Neff 5.5 Searched_HMMs 23785 Date Wed Jun 1 01:01:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781050.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2fp4_A Succinyl-COA ligase [GD 100.0 0 0 662.1 30.3 294 2-300 8-302 (305) 2 3mwd_B ATP-citrate synthase; A 100.0 0 0 665.7 26.6 297 1-300 3-318 (334) 3 2yv1_A Succinyl-COA ligase [AD 100.0 0 0 639.9 28.3 289 1-299 6-294 (294) 4 2nu8_A Succinyl-COA ligase [AD 100.0 0 0 626.3 29.0 288 2-298 1-288 (288) 5 2yv2_A Succinyl-COA synthetase 100.0 0 0 601.3 28.8 291 1-299 6-297 (297) 6 1oi7_A Succinyl-COA synthetase 100.0 0 0 566.7 29.0 287 3-298 2-288 (288) 7 2csu_A 457AA long hypothetical 100.0 0 0 402.2 24.7 273 1-294 2-284 (457) 8 3dmy_A Protein FDRA; predicted 100.0 0 0 354.9 18.4 198 56-261 21-224 (480) 9 2duw_A Putative COA-binding pr 99.7 2.1E-16 8.9E-21 123.6 9.7 121 3-136 9-132 (145) 10 1y81_A Conserved hypothetical 99.7 9.2E-16 3.9E-20 119.5 11.5 113 10-136 16-131 (138) 11 2d59_A Hypothetical protein PH 99.5 7.6E-14 3.2E-18 107.3 10.4 117 4-135 19-138 (144) 12 1iuk_A Hypothetical protein TT 99.4 2.1E-13 8.8E-18 104.5 7.6 114 9-134 14-130 (140) 13 3ff4_A Uncharacterized protein 99.2 6.4E-11 2.7E-15 88.6 10.0 108 10-133 6-116 (122) 14 3dmy_A Protein FDRA; predicted 98.6 3.3E-05 1.4E-09 52.2 20.0 200 84-298 160-413 (480) 15 3bio_A Oxidoreductase, GFO/IDH 98.6 6.1E-07 2.6E-11 63.2 10.7 122 3-132 4-130 (304) 16 1dih_A Dihydrodipicolinate red 98.4 1.6E-06 6.8E-11 60.5 9.9 123 6-132 3-133 (273) 17 3euw_A MYO-inositol dehydrogen 98.4 9.6E-07 4E-11 62.0 8.6 119 10-129 6-125 (344) 18 2csu_A 457AA long hypothetical 98.4 4.2E-06 1.8E-10 57.9 11.6 130 150-298 293-446 (457) 19 3evn_A Oxidoreductase, GFO/IDH 98.4 1.1E-05 4.5E-10 55.3 12.3 115 8-124 5-121 (329) 20 3ijp_A DHPR, dihydrodipicolina 98.3 7.1E-06 3E-10 56.4 10.9 120 9-132 22-149 (288) 21 3e18_A Oxidoreductase; dehydro 98.3 4E-06 1.7E-10 58.0 8.6 121 6-128 3-124 (359) 22 3moi_A Probable dehydrogenase; 98.3 1.8E-06 7.4E-11 60.3 6.5 116 10-129 4-124 (387) 23 1f06_A MESO-diaminopimelate D- 98.2 1E-05 4.3E-10 55.4 9.1 113 8-129 3-119 (320) 24 3ezy_A Dehydrogenase; structur 98.2 4.9E-06 2.1E-10 57.4 7.2 118 10-128 4-123 (344) 25 3db2_A Putative NADPH-dependen 98.2 4.2E-06 1.8E-10 57.9 6.8 122 7-129 4-126 (354) 26 3f4l_A Putative oxidoreductase 98.2 1.7E-05 7.1E-10 54.0 9.9 119 10-129 4-125 (345) 27 3ec7_A Putative dehydrogenase; 98.2 8.5E-06 3.6E-10 55.9 8.4 122 7-129 22-148 (357) 28 3cea_A MYO-inositol 2-dehydrog 98.2 3E-05 1.2E-09 52.5 10.9 198 7-216 7-213 (346) 29 3i23_A Oxidoreductase, GFO/IDH 98.1 1E-05 4.3E-10 55.4 8.2 125 9-135 3-129 (349) 30 3c1a_A Putative oxidoreductase 98.1 1.2E-05 5.1E-10 55.0 8.4 120 1-124 2-123 (315) 31 3kux_A Putative oxidoreductase 98.1 1.8E-05 7.4E-10 53.9 9.2 116 6-125 6-122 (352) 32 1ydw_A AX110P-like protein; st 98.1 1E-05 4.3E-10 55.4 7.7 118 7-125 5-126 (362) 33 3e82_A Putative oxidoreductase 98.1 1.6E-05 6.6E-10 54.2 8.6 128 1-135 1-131 (364) 34 2p2s_A Putative oxidoreductase 98.0 6.8E-05 2.9E-09 50.1 11.0 118 7-125 3-121 (336) 35 3e9m_A Oxidoreductase, GFO/IDH 98.0 2E-05 8.4E-10 53.6 8.1 116 9-125 6-122 (330) 36 1tlt_A Putative oxidoreductase 98.0 4.2E-05 1.8E-09 51.5 9.1 115 7-124 4-119 (319) 37 3fhl_A Putative oxidoreductase 98.0 5.1E-05 2.1E-09 51.0 9.3 124 7-135 4-129 (362) 38 3mz0_A Inositol 2-dehydrogenas 98.0 1.6E-05 6.9E-10 54.1 6.7 123 9-135 3-131 (344) 39 3m2t_A Probable dehydrogenase; 98.0 3.5E-05 1.5E-09 52.0 8.3 121 8-129 5-128 (359) 40 2vt3_A REX, redox-sensing tran 97.9 6.7E-05 2.8E-09 50.2 9.5 91 5-103 82-178 (215) 41 2ixa_A Alpha-N-acetylgalactosa 97.9 0.00042 1.7E-08 45.1 12.7 126 3-129 15-151 (444) 42 1zh8_A Oxidoreductase; TM0312, 97.9 5.4E-05 2.3E-09 50.8 7.7 118 7-125 17-137 (340) 43 2o4u_X Dimeric dihydrodiol deh 97.8 5.5E-05 2.3E-09 50.8 7.4 190 10-213 4-201 (334) 44 2glx_A 1,5-anhydro-D-fructose 97.8 7.6E-05 3.2E-09 49.9 8.1 124 10-135 2-126 (332) 45 2dc1_A L-aspartate dehydrogena 97.8 0.00051 2.2E-08 44.5 11.6 107 10-128 2-109 (236) 46 1vm6_A DHPR, dihydrodipicolina 97.8 0.00046 1.9E-08 44.9 11.3 105 6-133 10-115 (228) 47 1p9l_A Dihydrodipicolinate red 97.7 0.0013 5.6E-08 41.9 12.8 106 10-133 2-110 (245) 48 3oa2_A WBPB; oxidoreductase, s 97.7 0.00052 2.2E-08 44.5 10.6 112 10-125 5-128 (318) 49 3gdo_A Uncharacterized oxidore 97.7 0.00023 9.9E-09 46.7 8.7 119 8-130 5-126 (358) 50 3keo_A Redox-sensing transcrip 97.7 8.6E-05 3.6E-09 49.5 6.3 93 5-103 81-181 (212) 51 2dt5_A AT-rich DNA-binding pro 97.7 0.00021 8.9E-09 47.0 8.2 94 5-104 77-174 (211) 52 2ho3_A Oxidoreductase, GFO/IDH 97.6 0.00043 1.8E-08 45.0 9.0 118 10-129 3-122 (325) 53 1j5p_A Aspartate dehydrogenase 97.6 0.0011 4.8E-08 42.3 10.7 109 8-131 12-123 (253) 54 2nvw_A Galactose/lactose metab 97.5 0.00048 2E-08 44.7 8.7 121 9-129 40-175 (479) 55 2fp4_B Succinyl-COA ligase [GD 97.5 0.0024 9.9E-08 40.3 12.2 166 111-298 189-393 (395) 56 2nu8_B SCS-beta, succinyl-COA 97.5 0.0017 7.3E-08 41.2 11.4 164 112-297 183-385 (388) 57 1h6d_A Precursor form of gluco 97.5 0.00021 8.6E-09 47.1 6.5 119 6-125 81-205 (433) 58 1lc0_A Biliverdin reductase A; 97.5 0.0012 5.1E-08 42.1 9.8 114 6-125 5-120 (294) 59 1xea_A Oxidoreductase, GFO/IDH 97.4 0.00042 1.8E-08 45.1 7.4 116 10-128 4-122 (323) 60 3o9z_A Lipopolysaccaride biosy 97.4 0.003 1.2E-07 39.7 11.4 113 9-125 4-127 (312) 61 3ip3_A Oxidoreductase, putativ 97.2 0.00037 1.6E-08 45.4 4.7 117 10-129 4-129 (337) 62 2g0t_A Conserved hypothetical 97.2 0.0032 1.4E-07 39.5 9.2 197 4-214 18-253 (350) 63 3btv_A Galactose/lactose metab 97.1 0.0013 5.4E-08 42.0 6.9 120 9-128 21-154 (438) 64 3oqb_A Oxidoreductase; structu 97.0 0.0013 5.5E-08 42.0 6.3 116 10-130 8-144 (383) 65 1ff9_A Saccharopine reductase; 97.0 0.0041 1.7E-07 38.8 8.5 112 8-125 3-120 (450) 66 2z2v_A Hypothetical protein PH 96.9 0.0063 2.6E-07 37.6 9.1 109 7-125 15-129 (365) 67 3dty_A Oxidoreductase, GFO/IDH 96.8 0.0046 1.9E-07 38.5 7.6 115 7-124 11-139 (398) 68 2obn_A Hypothetical protein; p 96.5 0.016 6.9E-07 34.9 8.5 198 4-214 3-234 (349) 69 3ic5_A Putative saccharopine d 96.3 0.065 2.7E-06 31.1 12.2 104 8-120 5-116 (118) 70 2axq_A Saccharopine dehydrogen 96.1 0.053 2.2E-06 31.7 9.6 107 10-125 25-140 (467) 71 2b0j_A 5,10-methenyltetrahydro 95.8 0.034 1.4E-06 32.9 7.5 91 40-133 112-205 (358) 72 3bf0_A Protease 4; bacterial, 95.8 0.0095 4E-07 36.5 4.4 83 150-250 300-385 (593) 73 1np3_A Ketol-acid reductoisome 95.7 0.01 4.2E-07 36.3 4.2 137 8-158 16-155 (338) 74 1yrl_A Ketol-acid reductoisome 95.5 0.021 8.8E-07 34.3 5.3 137 7-156 36-178 (491) 75 2uyy_A N-PAC protein; long-cha 95.2 0.054 2.3E-06 31.7 6.8 121 1-127 23-148 (316) 76 3dzb_A Prephenate dehydrogenas 95.2 0.1 4.4E-06 29.8 8.1 121 9-134 6-137 (317) 77 3nkl_A UDP-D-quinovosamine 4-d 94.7 0.14 6.1E-06 28.9 7.7 92 6-125 2-96 (141) 78 3d1l_A Putative NADP oxidoredu 94.5 0.04 1.7E-06 32.5 4.5 95 7-107 9-107 (266) 79 1xyg_A Putative N-acetyl-gamma 94.5 0.25 1E-05 27.4 8.5 95 5-102 13-112 (359) 80 1vpd_A Tartronate semialdehyde 94.3 0.039 1.7E-06 32.5 4.0 114 9-129 6-125 (299) 81 3fr7_A Putative ketol-acid red 94.0 0.075 3.2E-06 30.7 5.1 121 9-135 55-188 (525) 82 1t4b_A Aspartate-semialdehyde 93.7 0.37 1.5E-05 26.3 12.4 122 10-133 3-139 (367) 83 3g0o_A 3-hydroxyisobutyrate de 93.6 0.39 1.7E-05 26.1 8.9 122 1-129 1-128 (303) 84 2h78_A Hibadh, 3-hydroxyisobut 93.1 0.2 8.5E-06 28.0 5.9 110 9-125 4-119 (302) 85 1yb4_A Tartronic semialdehyde 93.0 0.35 1.5E-05 26.5 7.1 110 10-127 5-121 (295) 86 3mwd_A ATP-citrate synthase; A 92.9 0.23 9.5E-06 27.7 6.0 103 150-254 272-390 (425) 87 2zyd_A 6-phosphogluconate dehy 92.8 0.33 1.4E-05 26.7 6.7 122 9-132 16-142 (480) 88 3cky_A 2-hydroxymethyl glutara 92.3 0.45 1.9E-05 25.8 6.8 114 6-126 2-121 (301) 89 3doj_A AT3G25530, dehydrogenas 91.4 0.74 3.1E-05 24.4 7.4 112 9-127 22-139 (310) 90 2gf2_A Hibadh, 3-hydroxyisobut 91.3 0.38 1.6E-05 26.2 5.6 110 10-126 2-117 (296) 91 2iz1_A 6-phosphogluconate dehy 91.1 0.8 3.3E-05 24.2 7.3 122 9-132 6-132 (474) 92 1yqg_A Pyrroline-5-carboxylate 90.8 0.4 1.7E-05 26.1 5.3 114 10-133 2-117 (263) 93 3l6d_A Putative oxidoreductase 90.7 0.37 1.6E-05 26.3 5.1 111 8-125 9-123 (306) 94 1mb4_A Aspartate-semialdehyde 90.6 0.89 3.8E-05 23.9 12.2 120 10-131 2-136 (370) 95 3e48_A Putative nucleoside-dip 89.1 1.2 4.9E-05 23.1 9.8 89 10-103 2-106 (289) 96 3gjz_A Microcin immunity prote 88.9 0.46 1.9E-05 25.7 4.4 72 204-284 227-300 (336) 97 2yrx_A Phosphoribosylglycinami 88.8 0.89 3.7E-05 23.9 5.8 91 2-97 15-110 (451) 98 2gz1_A Aspartate beta-semialde 88.1 1.3 5.7E-05 22.7 7.7 146 10-162 4-158 (366) 99 1req_A Methylmalonyl-COA mutas 87.7 0.6 2.5E-05 25.0 4.4 53 192-247 635-687 (727) 100 2py6_A Methyltransferase FKBM; 87.2 1.5 6.4E-05 22.4 6.4 87 7-99 51-142 (409) 101 3e8x_A Putative NAD-dependent 87.0 1.5 6.4E-05 22.4 6.1 87 9-102 22-130 (236) 102 2a7k_A CARB; crotonase, antibi 86.9 1.5 6.3E-05 22.4 6.0 13 117-129 113-125 (250) 103 2pgd_A 6-phosphogluconate dehy 86.8 1.6 6.8E-05 22.2 7.0 121 10-132 4-130 (482) 104 1pgj_A 6PGDH, 6-PGDH, 6-phosph 86.5 1.7 7E-05 22.1 7.1 119 10-132 3-132 (478) 105 2xij_A Methylmalonyl-COA mutas 86.1 0.88 3.7E-05 23.9 4.5 96 175-299 631-735 (762) 106 3g23_A Peptidase U61, LD-carbo 86.0 1.8 7.4E-05 22.0 7.5 83 195-285 170-257 (274) 107 1qyc_A Phenylcoumaran benzylic 85.4 1.9 7.9E-05 21.8 8.2 92 6-103 2-113 (308) 108 3c24_A Putative oxidoreductase 84.0 0.99 4.2E-05 23.6 3.9 117 10-134 13-130 (286) 109 1sg4_A 3,2-trans-enoyl-COA iso 83.9 2.2 9.2E-05 21.4 6.9 13 117-129 116-128 (260) 110 2gas_A Isoflavone reductase; N 83.7 2.2 9.4E-05 21.3 6.5 34 8-42 2-35 (307) 111 3g1w_A Sugar ABC transporter; 82.9 2.4 0.0001 21.1 11.0 85 37-129 7-94 (305) 112 2rir_A Dipicolinate synthase, 82.8 0.7 2.9E-05 24.5 2.8 24 151-175 158-181 (300) 113 2zcu_A Uncharacterized oxidore 81.4 2.7 0.00011 20.8 9.2 88 11-103 2-104 (286) 114 3fdb_A Beta C-S lyase, putativ 81.2 2.8 0.00012 20.7 6.3 72 56-129 112-191 (377) 115 2f1k_A Prephenate dehydrogenas 80.9 2.8 0.00012 20.7 10.9 99 10-115 2-103 (279) 116 3dr3_A N-acetyl-gamma-glutamyl 80.7 2.9 0.00012 20.6 8.9 102 6-109 2-113 (337) 117 1xgk_A Nitrogen metabolite rep 80.1 3 0.00013 20.5 9.6 195 6-210 3-242 (352) 118 2ozp_A N-acetyl-gamma-glutamyl 79.7 3.1 0.00013 20.4 9.1 96 7-107 3-104 (345) 119 2yv3_A Aspartate-semialdehyde 79.5 3.1 0.00013 20.4 6.4 94 10-107 2-97 (331) 120 1zl0_A Hypothetical protein PA 79.0 1.4 5.7E-05 22.7 3.2 73 203-285 207-282 (311) 121 2hqb_A Transcriptional activat 79.0 3.3 0.00014 20.3 6.0 120 32-159 3-135 (296) 122 1dci_A Dienoyl-COA isomerase; 78.7 3.2 0.00013 20.3 5.0 21 194-214 37-57 (275) 123 1uiy_A Enoyl-COA hydratase; ly 78.6 3.4 0.00014 20.2 5.8 22 193-214 31-52 (253) 124 2cvz_A Dehydrogenase, 3-hydrox 78.2 3.4 0.00014 20.1 7.0 110 9-126 2-113 (289) 125 1j32_A Aspartate aminotransfer 77.4 3.5 0.00015 20.1 4.9 111 56-168 121-261 (388) 126 1i36_A Conserved hypothetical 77.3 3.6 0.00015 20.0 7.1 105 10-121 2-106 (264) 127 1pjh_A Enoyl-COA isomerase; EC 76.7 3.8 0.00016 19.9 5.0 10 236-245 112-121 (280) 128 3f6t_A Aspartate aminotransfer 76.6 3.8 0.00016 19.8 5.1 79 55-135 199-292 (533) 129 2zy4_A L-aspartate beta-decarb 76.5 3.1 0.00013 20.4 4.4 108 11-131 169-290 (546) 130 3d4o_A Dipicolinate synthase s 76.2 2.3 9.8E-05 21.2 3.7 24 151-175 156-179 (293) 131 3brq_A HTH-type transcriptiona 76.1 3.9 0.00017 19.8 9.8 207 15-238 1-227 (296) 132 1gd9_A Aspartate aminotransfer 76.0 4 0.00017 19.7 4.9 76 55-132 117-204 (389) 133 3nra_A Aspartate aminotransfer 75.5 4.1 0.00017 19.7 5.9 75 56-132 133-223 (407) 134 3lke_A Enoyl-COA hydratase; ny 75.3 4.1 0.00017 19.6 5.9 22 193-214 36-57 (263) 135 3gt0_A Pyrroline-5-carboxylate 75.0 3.3 0.00014 20.2 4.3 101 9-113 3-108 (247) 136 1vco_A CTP synthetase; tetrame 74.8 1.6 6.9E-05 22.2 2.7 20 112-132 375-394 (550) 137 1wz8_A Enoyl-COA hydratase; ly 74.8 4.2 0.00018 19.5 6.0 22 193-214 42-63 (264) 138 3myb_A Enoyl-COA hydratase; ss 74.7 4.3 0.00018 19.5 6.4 20 195-214 60-79 (286) 139 3ju1_A Enoyl-COA hydratase/iso 74.7 4.3 0.00018 19.5 5.7 23 120-144 164-186 (407) 140 1hdo_A Biliverdin IX beta redu 74.6 4.3 0.00018 19.5 11.5 89 8-102 3-110 (206) 141 2z9v_A Aspartate aminotransfer 74.6 4.3 0.00018 19.5 7.1 98 64-162 100-213 (392) 142 2p4q_A 6-phosphogluconate dehy 74.2 4.4 0.00018 19.5 11.1 122 10-133 12-139 (497) 143 3gow_A PAAG, probable enoyl-CO 73.9 3.6 0.00015 20.0 4.3 27 116-144 109-135 (254) 144 2iz6_A Molybdenum cofactor car 73.8 4.5 0.00019 19.4 5.8 46 235-300 130-175 (176) 145 2izz_A Pyrroline-5-carboxylate 73.4 4.6 0.00019 19.3 9.0 122 6-132 20-149 (322) 146 1bgv_A Glutamate dehydrogenase 73.2 3.8 0.00016 19.8 4.2 51 150-201 229-282 (449) 147 2vk8_A Pyruvate decarboxylase 72.7 2.9 0.00012 20.6 3.5 39 201-244 431-469 (563) 148 1u08_A Hypothetical aminotrans 72.5 4.8 0.0002 19.2 6.0 44 86-129 155-204 (386) 149 2bma_A Glutamate dehydrogenase 72.3 4.9 0.0002 19.2 8.2 26 150-175 251-276 (470) 150 3b46_A Aminotransferase BNA3; 72.3 3.2 0.00013 20.4 3.6 72 56-129 149-242 (447) 151 3p5m_A Enoyl-COA hydratase/iso 72.2 4.9 0.00021 19.2 5.7 22 193-214 38-59 (255) 152 1leh_A Leucine dehydrogenase; 72.1 4.9 0.00021 19.1 4.6 26 150-175 172-197 (364) 153 2pbp_A Enoyl-COA hydratase sub 71.9 4.7 0.0002 19.3 4.4 27 116-144 113-139 (258) 154 1b5p_A Protein (aspartate amin 71.4 4.7 0.0002 19.3 4.3 76 56-133 122-209 (385) 155 2oga_A Transaminase; PLP-depen 71.3 5.1 0.00022 19.0 5.6 148 18-174 62-242 (399) 156 3moy_A Probable enoyl-COA hydr 71.2 4.8 0.0002 19.2 4.3 20 195-214 44-63 (263) 157 2vk2_A YTFQ, ABC transporter p 70.7 5.3 0.00022 18.9 7.7 70 58-129 20-91 (306) 158 2pw9_A Putative formate dehydr 70.4 4.7 0.0002 19.3 4.2 14 159-172 200-213 (268) 159 2wvg_A PDC, pyruvate decarboxy 70.1 5.4 0.00023 18.9 5.2 104 189-298 415-527 (568) 160 3dhn_A NAD-dependent epimerase 69.1 5.7 0.00024 18.7 10.3 67 7-79 3-76 (227) 161 3i6i_A Putative leucoanthocyan 68.8 5.8 0.00024 18.7 15.4 91 8-102 10-118 (346) 162 3clk_A Transcription regulator 68.1 6 0.00025 18.6 8.7 187 32-236 6-210 (290) 163 3ggo_A Prephenate dehydrogenas 67.9 6.1 0.00025 18.6 4.7 93 10-106 35-131 (314) 164 3bpp_A 1510-N membrane proteas 67.8 6.1 0.00025 18.6 8.6 20 81-100 25-44 (230) 165 2j5g_A ALR4455 protein; enzyme 67.7 6.1 0.00026 18.5 6.7 21 194-214 57-77 (263) 166 3k92_A NAD-GDH, NAD-specific g 67.1 6.2 0.00026 18.5 4.2 48 150-201 220-273 (424) 167 2aeu_A Hypothetical protein MJ 67.1 3 0.00013 20.5 2.6 110 56-170 108-232 (374) 168 2iex_A Dihydroxynapthoic acid 67.1 5.8 0.00024 18.7 4.1 28 116-145 124-151 (272) 169 3ct6_A PTS-dependent dihydroxy 66.2 6.5 0.00027 18.4 7.3 69 152-222 4-73 (131) 170 3p85_A Enoyl-COA hydratase; ss 66.0 3.6 0.00015 20.0 2.8 19 196-214 60-78 (270) 171 1nvm_B Acetaldehyde dehydrogen 65.6 6.7 0.00028 18.3 6.9 97 6-104 2-106 (312) 172 2vbi_A Pyruvate decarboxylase; 65.3 6.8 0.00029 18.2 4.6 138 150-298 375-519 (566) 173 1mj3_A Enoyl-COA hydratase, mi 65.0 4.8 0.0002 19.2 3.3 27 117-145 116-142 (260) 174 2iks_A DNA-binding transcripti 64.4 7 0.0003 18.1 11.1 90 27-125 13-104 (293) 175 1s1m_A CTP synthase; CTP synth 63.8 4.7 0.0002 19.3 3.1 75 56-133 302-383 (545) 176 3l3s_A Enoyl-COA hydratase/iso 63.1 7.5 0.00031 18.0 6.3 20 195-214 40-59 (263) 177 2tmg_A Protein (glutamate dehy 63.1 7.5 0.00031 18.0 4.7 52 150-204 208-265 (415) 178 3oc7_A Enoyl-COA hydratase; se 63.0 7.5 0.00032 18.0 5.7 21 194-214 44-64 (267) 179 2nxw_A Phenyl-3-pyruvate decar 62.9 7.5 0.00032 18.0 4.1 106 181-298 416-528 (565) 180 3fdu_A Putative enoyl-COA hydr 62.5 7.7 0.00032 17.9 6.2 27 116-144 117-143 (266) 181 1xi9_A Putative transaminase; 62.4 7 0.00029 18.2 3.7 77 56-134 132-220 (406) 182 3mw9_A GDH 1, glutamate dehydr 62.0 7.8 0.00033 17.9 4.6 48 150-201 243-296 (501) 183 1bf6_A Phosphotriesterase homo 62.0 6.4 0.00027 18.4 3.5 48 79-126 31-78 (291) 184 1vkn_A N-acetyl-gamma-glutamyl 60.0 8.5 0.00036 17.6 6.2 84 9-96 14-102 (351) 185 1h1y_A D-ribulose-5-phosphate 59.9 7.8 0.00033 17.9 3.6 30 71-100 9-38 (228) 186 1v9l_A Glutamate dehydrogenase 59.0 8.8 0.00037 17.5 4.5 26 150-175 209-234 (421) 187 1m32_A 2-aminoethylphosphonate 58.7 8.9 0.00037 17.5 6.0 91 68-159 101-207 (366) 188 3h81_A Enoyl-COA hydratase ECH 58.6 8.9 0.00037 17.5 6.1 47 93-145 114-160 (278) 189 2vx2_A Enoyl-COA hydratase dom 58.5 9 0.00038 17.5 5.5 24 119-144 147-170 (287) 190 3h2s_A Putative NADH-flavin re 57.8 9.2 0.00039 17.4 8.7 31 10-41 2-32 (224) 191 2ep5_A 350AA long hypothetical 57.6 9.3 0.00039 17.4 10.4 119 9-130 5-152 (350) 192 3hl2_A O-phosphoseryl-tRNA(SEC 56.8 2.5 0.0001 21.0 0.7 75 58-134 171-259 (501) 193 3mjf_A Phosphoribosylamine--gl 56.7 4.5 0.00019 19.4 2.0 88 8-97 3-94 (431) 194 3pea_A Enoyl-COA hydratase/iso 56.3 9.7 0.00041 17.2 6.3 26 117-144 117-142 (261) 195 1c1d_A L-phenylalanine dehydro 56.3 9.7 0.00041 17.2 4.6 26 150-175 174-199 (355) 196 3bpt_A 3-hydroxyisobutyryl-COA 56.3 9.7 0.00041 17.2 6.6 53 88-145 95-147 (363) 197 2o0r_A RV0858C (N-succinyldiam 56.0 9.8 0.00041 17.2 5.2 78 56-133 117-205 (411) 198 1szo_A 6-oxocamphor hydrolase; 55.4 10 0.00042 17.2 6.1 10 93-102 59-68 (257) 199 3ngj_A Deoxyribose-phosphate a 55.0 8.3 0.00035 17.7 3.1 35 71-107 55-89 (239) 200 1gtm_A Glutamate dehydrogenase 54.8 10 0.00043 17.1 4.7 52 150-202 211-266 (419) 201 1ovm_A Indole-3-pyruvate decar 54.8 10 0.00043 17.1 5.5 26 189-214 410-435 (552) 202 1a53_A IGPS, indole-3-glycerol 54.7 10 0.00043 17.1 7.3 14 91-104 72-85 (247) 203 1rkx_A CDP-glucose-4,6-dehydra 54.6 10 0.00044 17.1 5.8 36 6-42 7-42 (357) 204 3i47_A Enoyl COA hydratase/iso 54.2 11 0.00044 17.0 6.3 27 116-144 117-143 (268) 205 2gzx_A Putative TATD related D 54.0 11 0.00045 17.0 9.9 37 83-121 18-54 (265) 206 1vb5_A Translation initiation 53.6 11 0.00045 17.0 8.1 105 72-181 111-218 (276) 207 2ioj_A Hypothetical protein AF 53.4 8.3 0.00035 17.7 2.9 48 74-125 54-102 (139) 208 2ej5_A Enoyl-COA hydratase sub 53.4 11 0.00046 17.0 6.1 54 87-145 86-139 (257) 209 1ub3_A Aldolase protein; schif 53.3 5 0.00021 19.1 1.8 158 60-229 23-197 (220) 210 1o0y_A Deoxyribose-phosphate a 53.0 9.6 0.00041 17.3 3.2 35 71-107 71-105 (260) 211 3lao_A Enoyl-COA hydratase/iso 52.5 9.3 0.00039 17.4 3.0 20 195-214 46-65 (258) 212 2r00_A Aspartate-semialdehyde 52.5 11 0.00047 16.9 8.3 93 8-103 3-97 (336) 213 3hsk_A Aspartate-semialdehyde 52.4 11 0.00047 16.9 7.2 94 9-102 20-125 (381) 214 3dqp_A Oxidoreductase YLBE; al 52.2 11 0.00048 16.8 8.5 87 10-102 2-105 (219) 215 3ome_A Enoyl-COA hydratase; ss 51.8 11 0.00048 16.8 6.4 10 93-102 66-75 (282) 216 1qor_A Quinone oxidoreductase; 51.7 12 0.00048 16.8 5.6 27 149-175 139-166 (327) 217 1ef8_A Methylmalonyl COA decar 50.9 12 0.0005 16.7 4.1 54 87-145 88-141 (261) 218 3ctl_A D-allulose-6-phosphate 50.9 12 0.0005 16.7 3.8 51 70-124 59-109 (231) 219 2x58_A Peroxisomal bifunctiona 50.8 12 0.0005 16.7 5.5 26 9-36 302-327 (727) 220 3bb8_A CDP-4-keto-6-deoxy-D-gl 50.7 12 0.0005 16.7 6.0 118 54-174 113-248 (437) 221 2rcy_A Pyrroline carboxylate r 50.4 12 0.00051 16.6 11.2 113 7-132 3-119 (262) 222 2bw0_A 10-FTHFDH, 10-formyltet 50.2 11 0.00044 17.0 3.0 98 5-106 19-133 (329) 223 1n7k_A Deoxyribose-phosphate a 50.0 9.5 0.0004 17.3 2.7 43 60-107 40-82 (234) 224 3cmm_A Ubiquitin-activating en 49.8 12 0.00052 16.6 6.5 120 7-134 26-152 (1015) 225 3h0u_A Putative enoyl-COA hydr 49.4 13 0.00053 16.5 4.5 27 117-144 122-148 (289) 226 1evy_A Glycerol-3-phosphate de 49.3 7.9 0.00033 17.8 2.2 115 10-129 17-156 (366) 227 1byr_A Protein (endonuclease); 49.1 13 0.00053 16.5 6.5 67 59-127 20-87 (155) 228 2x7j_A 2-succinyl-5-enolpyruvy 48.8 13 0.00054 16.5 4.5 22 276-297 543-566 (604) 229 1qyd_A Pinoresinol-lariciresin 48.0 13 0.00055 16.4 9.8 37 6-43 2-38 (313) 230 2zxd_A Alpha-L-fucosidase, put 47.8 7.8 0.00033 17.9 2.0 54 71-124 94-168 (455) 231 2w7t_A CTP synthetase, putativ 47.3 13 0.00057 16.3 5.4 74 57-133 23-107 (273) 232 3iup_A Putative NADPH:quinone 45.8 14 0.0006 16.2 4.1 27 149-175 170-197 (379) 233 2ahr_A Putative pyrroline carb 45.7 14 0.0006 16.2 5.1 112 9-130 4-116 (259) 234 3g64_A Putative enoyl-COA hydr 45.6 14 0.0006 16.2 6.4 21 194-214 50-70 (279) 235 3kqf_A Enoyl-COA hydratase/iso 45.3 14 0.00061 16.1 7.1 26 117-144 121-146 (265) 236 1txg_A Glycerol-3-phosphate de 45.2 15 0.00061 16.1 4.2 49 56-106 59-108 (335) 237 3op7_A Aminotransferase class 45.2 15 0.00061 16.1 6.4 79 56-134 112-200 (375) 238 3oa3_A Aldolase; structural ge 45.0 12 0.0005 16.7 2.6 35 71-107 86-120 (288) 239 3f0h_A Aminotransferase; RER07 44.8 15 0.00062 16.1 4.3 97 64-161 112-222 (376) 240 3gkb_A Putative enoyl-COA hydr 44.6 15 0.00062 16.1 6.0 28 117-145 125-152 (287) 241 3ojg_A Phosphotriesterase; (be 44.4 15 0.00063 16.1 4.1 90 36-133 12-103 (330) 242 1p0f_A NADP-dependent alcohol 43.9 15 0.00064 16.0 14.4 35 148-184 189-223 (373) 243 3eya_A Pyruvate dehydrogenase 43.7 15 0.00064 16.0 5.1 140 150-299 371-517 (549) 244 2ew2_A 2-dehydropantoate 2-red 43.7 15 0.00064 16.0 11.5 157 9-178 4-179 (316) 245 3e2y_A Kynurenine-oxoglutarate 43.6 15 0.00064 16.0 3.2 69 56-126 116-205 (410) 246 3gxh_A Putative phosphatase (D 42.3 16 0.00068 15.9 3.9 88 72-164 21-111 (157) 247 2r6j_A Eugenol synthase 1; phe 42.3 16 0.00068 15.9 7.2 35 8-43 11-45 (318) 248 3a06_A 1-deoxy-D-xylulose 5-ph 41.7 16 0.00069 15.8 9.2 111 9-126 4-140 (376) 249 1t0k_B YL32, RP73, 60S ribosom 41.2 17 0.0007 15.8 4.6 61 57-126 9-69 (105) 250 1d2f_A MALY protein; aminotran 41.1 17 0.00071 15.7 5.0 74 56-131 118-205 (390) 251 2dr1_A PH1308 protein, 386AA l 41.1 17 0.00071 15.7 7.9 98 64-162 112-225 (386) 252 2vc7_A Aryldialkylphosphatase; 41.0 17 0.00071 15.7 4.3 90 37-133 8-97 (314) 253 2wvv_A Alpha-L-fucosidase; alp 41.0 13 0.00055 16.4 2.3 53 72-124 68-141 (450) 254 3nnk_A Ureidoglycine-glyoxylat 40.6 17 0.00072 15.7 7.4 97 64-161 105-216 (411) 255 1ys4_A Aspartate-semialdehyde 40.5 17 0.00072 15.7 9.2 146 10-160 10-185 (354) 256 2bka_A CC3, TAT-interacting pr 40.5 17 0.00072 15.7 10.3 95 7-104 17-133 (242) 257 2ob3_A Parathion hydrolase; me 40.2 17 0.00073 15.6 4.0 45 83-127 49-93 (330) 258 3ecs_A Translation initiation 40.1 17 0.00073 15.6 8.2 105 72-181 123-230 (315) 259 2x3l_A ORN/Lys/Arg decarboxyla 39.8 11 0.00048 16.8 1.9 75 55-132 102-186 (446) 260 2q35_A CURF; crotonase, lyase; 39.8 18 0.00074 15.6 5.4 26 117-144 109-134 (243) 261 2nqt_A N-acetyl-gamma-glutamyl 39.6 18 0.00074 15.6 6.2 98 6-106 7-114 (352) 262 3o0f_A Putative metal-dependen 39.5 18 0.00075 15.6 3.7 43 82-125 29-71 (301) 263 2wm3_A NMRA-like family domain 39.3 18 0.00075 15.6 9.9 93 6-104 4-116 (299) 264 1mdl_A Mandelate racemase; iso 39.2 18 0.00075 15.6 3.4 66 51-116 116-182 (359) 265 3jzl_A Putative cystathionine 38.4 18 0.00077 15.5 9.4 129 57-185 110-269 (409) 266 3ndo_A Deoxyribose-phosphate a 38.2 17 0.00073 15.6 2.6 41 61-107 34-74 (231) 267 2q1s_A Putative nucleotide sug 38.1 19 0.00078 15.4 5.2 34 7-41 31-64 (377) 268 3ihj_A Alanine aminotransferas 37.6 19 0.0008 15.4 5.7 74 56-131 188-278 (498) 269 3mad_A Sphingosine-1-phosphate 37.5 16 0.00067 15.9 2.3 72 59-132 202-280 (514) 270 1j6o_A TATD-related deoxyribon 37.4 19 0.0008 15.4 8.9 38 82-121 28-65 (268) 271 2x4g_A Nucleoside-diphosphate- 37.2 19 0.00081 15.4 11.1 90 7-102 12-125 (342) 272 3mo4_A Alpha-1,3/4-fucosidase; 37.0 19 0.00082 15.3 3.5 49 76-124 58-130 (480) 273 2hjs_A USG-1 protein homolog; 36.9 19 0.00082 15.3 9.2 122 7-131 5-135 (340) 274 3lp8_A Phosphoribosylamine-gly 36.4 20 0.00083 15.3 5.5 87 8-97 21-110 (442) 275 3b8x_A WBDK, pyridoxamine 5-ph 36.2 20 0.00084 15.3 2.8 114 18-132 33-166 (390) 276 2pv7_A T-protein [includes: ch 36.1 20 0.00084 15.2 11.8 81 9-107 22-103 (298) 277 3g17_A Similar to 2-dehydropan 35.6 20 0.00086 15.2 6.3 97 9-109 3-103 (294) 278 1g8m_A Aicar transformylase-IM 35.6 20 0.00086 15.2 2.6 25 259-283 559-584 (593) 279 4pga_A Glutaminase-asparaginas 35.6 20 0.00086 15.2 5.0 93 195-292 236-333 (337) 280 3eyp_A Putative alpha-L-fucosi 35.6 20 0.00086 15.2 3.3 52 73-124 45-120 (469) 281 1tqx_A D-ribulose-5-phosphate 35.2 21 0.00087 15.1 4.0 127 72-216 9-150 (227) 282 1o69_A Aminotransferase; struc 35.1 21 0.00087 15.1 5.0 76 56-133 77-161 (394) 283 2oda_A Hypothetical protein ps 34.9 21 0.00088 15.1 2.7 29 271-299 160-189 (196) 284 2yy7_A L-threonine dehydrogena 34.5 21 0.00089 15.1 7.1 37 8-44 2-38 (312) 285 3ktd_A Prephenate dehydrogenas 34.3 21 0.0009 15.1 7.5 90 8-104 8-100 (341) 286 1agx_A Glutaminase-asparaginas 34.0 22 0.00091 15.0 5.7 95 194-292 229-327 (331) 287 2w3p_A Benzoyl-COA-dihydrodiol 33.8 22 0.00092 15.0 6.0 13 172-184 324-336 (556) 288 2g5c_A Prephenate dehydrogenas 33.7 22 0.00092 15.0 11.9 93 10-106 3-99 (281) 289 2zkr_6 60S ribosomal protein L 33.7 22 0.00092 15.0 2.6 41 85-125 32-72 (115) 290 3kax_A Aminotransferase, class 33.6 22 0.00092 15.0 7.5 74 56-131 113-199 (383) 291 3frk_A QDTB; aminotransferase, 33.6 22 0.00092 15.0 4.4 119 56-177 81-218 (373) 292 3kp1_A D-ornithine aminomutase 33.3 22 0.00093 15.0 2.9 16 111-126 592-607 (763) 293 1bw0_A TAT, protein (tyrosine 33.1 22 0.00094 14.9 5.0 76 56-133 135-222 (416) 294 2vbf_A Branched-chain alpha-ke 32.5 23 0.00096 14.9 5.3 137 150-298 391-537 (570) 295 3ehd_A Uncharacterized conserv 32.4 23 0.00097 14.9 2.5 65 233-298 94-162 (162) 296 3hcw_A Maltose operon transcri 32.3 23 0.00097 14.9 10.7 190 33-238 6-219 (295) 297 2r2n_A Kynurenine/alpha-aminoa 32.2 23 0.00097 14.8 6.4 74 56-131 139-234 (425) 298 3dr4_A Putative perosamine syn 32.2 23 0.00097 14.8 3.7 116 57-175 104-235 (391) 299 1wdk_A Fatty oxidation complex 32.1 23 0.00098 14.8 6.2 29 8-38 314-342 (715) 300 2j5i_A P-hydroxycinnamoyl COA 31.9 23 0.00098 14.8 6.8 26 117-144 125-150 (276) 301 2q1w_A Putative nucleotide sug 31.8 24 0.00099 14.8 8.1 33 9-42 22-54 (333) 302 3fpc_A NADP-dependent alcohol 31.4 24 0.001 14.8 4.4 14 284-297 325-338 (352) 303 1lc5_A COBD, L-threonine-O-3-p 31.3 24 0.001 14.8 4.8 73 56-128 105-186 (364) 304 3gza_A Putative alpha-L-fucosi 31.1 24 0.001 14.7 3.6 49 76-124 53-125 (443) 305 1o4s_A Aspartate aminotransfer 31.0 24 0.001 14.7 5.1 79 56-134 132-220 (389) 306 2dou_A Probable N-succinyldiam 31.0 24 0.001 14.7 3.1 74 56-131 118-201 (376) 307 3inp_A D-ribulose-phosphate 3- 31.0 24 0.001 14.7 3.1 204 64-300 23-246 (246) 308 2f46_A Hypothetical protein; 7 30.2 25 0.001 14.6 4.4 73 86-161 34-113 (156) 309 1mdo_A ARNB aminotransferase; 30.1 25 0.0011 14.6 2.4 120 56-176 84-218 (393) 310 1mzh_A Deoxyribose-phosphate a 30.1 25 0.001 14.7 2.3 41 60-107 24-64 (225) 311 1wkv_A Cysteine synthase; homo 29.8 25 0.0011 14.6 7.7 149 56-214 129-288 (389) 312 2xe4_A Oligopeptidase B; hydro 29.8 23 0.00095 14.9 2.0 34 148-183 586-620 (751) 313 1c7n_A Cystalysin; transferase 29.6 26 0.0011 14.6 5.4 41 92-132 162-208 (399) 314 2a4a_A Deoxyribose-phosphate a 28.9 26 0.0011 14.5 4.3 44 61-107 53-100 (281) 315 1nns_A L-asparaginase II; amid 28.9 26 0.0011 14.5 6.2 91 195-293 226-323 (326) 316 3eez_A Putative mandelate race 28.6 27 0.0011 14.5 4.4 174 50-241 115-293 (378) 317 1qgo_A CBIK protein, anaerobic 28.6 27 0.0011 14.5 9.3 43 78-120 57-103 (264) 318 2vyc_A Biodegradative arginine 28.5 27 0.0011 14.4 7.9 49 81-131 289-351 (755) 319 2z67_A O-phosphoseryl-tRNA(SEC 28.2 27 0.0011 14.4 3.2 75 58-134 185-274 (456) 320 1vcv_A Probable deoxyribose-ph 28.2 17 0.00072 15.7 1.2 40 61-107 22-61 (226) 321 1nzy_A Dehalogenase, 4-chlorob 27.8 27 0.0012 14.4 6.3 27 116-144 118-144 (269) 322 3ju2_A Uncharacterized protein 27.8 28 0.0012 14.4 2.2 50 83-132 21-70 (284) 323 3cpq_A 50S ribosomal protein L 27.7 28 0.0012 14.4 4.9 41 85-125 27-67 (110) 324 1w41_A 50S ribosomal protein L 27.7 28 0.0012 14.4 4.1 41 85-125 22-62 (101) 325 1orr_A CDP-tyvelose-2-epimeras 27.6 28 0.0012 14.3 4.5 91 9-103 2-124 (347) 326 3mtj_A Homoserine dehydrogenas 27.5 28 0.0012 14.3 4.2 161 7-183 9-188 (444) 327 1zcz_A Bifunctional purine bio 27.2 28 0.0012 14.3 4.0 46 75-127 267-312 (464) 328 3brs_A Periplasmic binding pro 27.2 28 0.0012 14.3 10.8 150 58-211 25-196 (289) 329 1kew_A RMLB;, DTDP-D-glucose 4 26.6 29 0.0012 14.2 4.9 32 10-42 2-33 (361) 330 1yix_A Deoxyribonuclease YCFH; 26.6 29 0.0012 14.2 10.3 37 83-121 22-58 (265) 331 2tps_A Protein (thiamin phosph 26.6 29 0.0012 14.2 2.9 45 84-128 34-85 (227) 332 3gtx_A Organophosphorus hydrol 26.3 29 0.0012 14.2 3.7 119 36-163 22-168 (339) 333 1yuw_A Heat shock cognate 71 k 26.3 29 0.0012 14.2 3.3 36 70-105 138-177 (554) 334 1iz0_A Quinone oxidoreductase; 26.2 29 0.0012 14.2 2.4 22 153-174 129-150 (302) 335 3he2_A Enoyl-COA hydratase ECH 26.1 29 0.0012 14.2 4.4 26 117-144 126-151 (264) 336 3ipw_A Hydrolase TATD family p 25.9 30 0.0012 14.1 4.6 49 71-121 29-90 (325) 337 1yb5_A Quinone oxidoreductase; 25.8 30 0.0013 14.1 16.1 13 285-297 326-338 (351) 338 2w1v_A Nitrilase-2, nitrilase 25.7 30 0.0013 14.1 5.5 55 81-136 22-103 (276) 339 3isa_A Putative enoyl-COA hydr 25.4 30 0.0013 14.1 6.4 52 88-144 91-142 (254) 340 3ndi_A Methyltransferase; S-ad 25.1 31 0.0013 14.1 8.1 31 103-133 182-215 (416) 341 1v5e_A Pyruvate oxidase; oxido 24.7 31 0.0013 14.0 4.6 102 189-298 415-523 (590) 342 1kol_A Formaldehyde dehydrogen 24.5 31 0.0013 14.0 6.4 10 285-294 368-377 (398) 343 1wwk_A Phosphoglycerate dehydr 24.5 31 0.0013 14.0 4.2 98 70-177 44-168 (307) 344 1ks9_A KPA reductase;, 2-dehyd 24.4 32 0.0013 14.0 9.1 96 10-109 2-104 (291) 345 2kho_A Heat shock protein 70; 24.2 32 0.0013 13.9 3.6 37 70-106 134-174 (605) 346 2vhh_A CG3027-PA; hydrolase; 2 24.2 32 0.0013 13.9 5.3 44 83-127 101-166 (405) 347 3g0t_A Putative aminotransfera 24.2 32 0.0013 13.9 6.0 72 56-129 140-223 (437) 348 2bln_A Protein YFBG; transfera 24.1 32 0.0013 13.9 2.5 33 10-44 2-35 (305) 349 1r57_A Conserved hypothetical 24.1 32 0.0013 13.9 2.0 26 104-130 51-76 (102) 350 3dzz_A Putative pyridoxal 5'-p 23.9 32 0.0014 13.9 6.2 74 56-131 116-203 (391) 351 3h75_A Periplasmic sugar-bindi 23.8 33 0.0014 13.9 10.8 86 37-129 6-94 (350) 352 3e2v_A 3'-5'-exonuclease; stru 23.6 33 0.0014 13.9 4.6 37 83-121 40-76 (401) 353 3ego_A Probable 2-dehydropanto 23.6 33 0.0014 13.9 7.3 97 9-109 3-106 (307) 354 2ch1_A 3-hydroxykynurenine tra 23.5 33 0.0014 13.9 4.6 93 69-162 115-222 (396) 355 3ddm_A Putative mandelate race 23.5 33 0.0014 13.9 3.2 66 50-117 128-193 (392) 356 3nva_A CTP synthase; rossman f 23.4 25 0.001 14.6 1.3 10 236-245 325-334 (535) 357 2oz8_A MLL7089 protein; struct 23.3 33 0.0014 13.8 4.3 80 51-135 115-197 (389) 358 3i83_A 2-dehydropantoate 2-red 23.2 33 0.0014 13.8 11.3 154 10-178 4-176 (320) 359 2e4u_A Metabotropic glutamate 23.1 34 0.0014 13.8 9.3 89 148-242 184-276 (555) 360 3dzd_A Transcriptional regulat 23.0 18 0.00078 15.5 0.6 80 208-295 154-240 (368) 361 3l6u_A ABC-type sugar transpor 23.0 34 0.0014 13.8 11.5 87 32-126 6-94 (293) 362 2j8z_A Quinone oxidoreductase; 22.8 34 0.0014 13.8 6.0 12 285-296 328-339 (354) 363 1pqw_A Polyketide synthase; ro 22.8 34 0.0014 13.8 8.6 98 5-124 36-134 (198) 364 2q7w_A Aspartate aminotransfer 22.6 34 0.0014 13.8 6.6 74 56-131 127-215 (396) 365 2np9_A DPGC; protein inhibitor 22.4 35 0.0015 13.7 6.1 22 193-214 199-220 (440) 366 1t9b_A Acetolactate synthase, 22.3 35 0.0015 13.7 4.7 99 189-299 515-625 (677) 367 1gvf_A Tagatose-bisphosphate a 21.8 35 0.0015 13.7 5.7 171 33-228 42-223 (286) 368 3hvy_A Cystathionine beta-lyas 21.7 36 0.0015 13.6 7.7 166 71-242 148-361 (427) 369 2d73_A Alpha-glucosidase SUSB; 21.7 36 0.0015 13.6 3.4 52 160-216 581-635 (738) 370 3jva_A Dipeptide epimerase; en 21.7 36 0.0015 13.6 4.1 159 51-221 111-274 (354) 371 2rgy_A Transcriptional regulat 21.6 36 0.0015 13.6 11.8 185 32-236 6-214 (290) 372 2ip4_A PURD, phosphoribosylami 21.5 36 0.0015 13.6 4.7 84 10-96 2-87 (417) 373 3d02_A Putative LACI-type tran 21.4 36 0.0015 13.6 5.7 79 35-126 5-91 (303) 374 1rd5_A Tryptophan synthase alp 21.2 37 0.0015 13.6 3.9 69 222-297 188-261 (262) 375 3cg0_A Response regulator rece 21.2 37 0.0015 13.6 2.4 113 152-299 11-128 (140) 376 2wtb_A MFP2, fatty acid multif 21.0 37 0.0015 13.6 4.1 96 9-109 313-434 (725) 377 1atz_A VON willebrand factor; 21.0 35 0.0015 13.7 1.6 10 237-246 134-143 (189) 378 2i5e_A Hypothetical protein MM 21.0 37 0.0016 13.5 9.5 111 78-202 71-184 (211) 379 2wlt_A L-asparaginase; hydrola 20.4 38 0.0016 13.5 6.3 96 188-294 227-330 (332) 380 2fli_A Ribulose-phosphate 3-ep 20.4 20 0.00084 15.3 0.3 60 60-124 51-112 (220) 381 3c1o_A Eugenol synthase; pheny 20.1 39 0.0016 13.4 14.6 90 7-102 3-112 (321) 382 3cnb_A DNA-binding response re 20.1 39 0.0016 13.4 3.7 116 152-298 10-129 (143) No 1 >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Probab=100.00 E-value=0 Score=662.11 Aligned_cols=294 Identities=61% Similarity=1.022 Sum_probs=285.2 Q ss_pred EEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 56771797399988884377999999986269818997658998868727745775314078503578863688621204 Q gi|254781050|r 2 SILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 2 sil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) +||+||||||||||||||+|+||+++|++| |||||+||||+|||+++.| +|||+||+||++++++|+++|||||+ T Consensus 8 ~i~~~~~t~v~vqGitg~~g~~~~~~m~~y-gt~iv~GV~P~kgG~~v~G----vPvy~SV~ea~~~~~~d~aiI~vPa~ 82 (305) T 2fp4_A 8 HLYVDKNTKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKGGKTHLG----LPVFNTVKEAKEQTGATASVIYVPPP 82 (305) T ss_dssp GGCCCTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHHCCCEEEECCCHH T ss_pred CEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEC----CCCCCCHHHHHHCCCCCEEEECCCHH T ss_conf 289779986999879884766999999984-8967985579978734338----43538299996241753166514878 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC Q ss_conf 567889999853995899805884688899999-9840177189406851013555100020011235778679998054 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVK-ARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~-~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300) +++|+++||+++|+|.+||||||||++|+++++ ++|+++++|||||||+|+++|+..+++++|...++||+||++|||| T Consensus 83 ~v~~ai~ea~~~gi~~iViit~Gf~e~~~~~~~~~~a~~~g~riiGPNc~Gii~p~~~~~~~~~~~~~~~G~vgiiSqSG 162 (305) T 2fp4_A 83 FAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSG 162 (305) T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCEEEETTTEEEESSCGGGCCEEEEEEEESCS T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECC T ss_conf 88999999875567889990599975537999999974289689889987663766245751675346776614998224 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268 Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300) Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300) +|++++++|++++|+|||++||+|||+++|++|.|+|+||++||+|++|+||+|++|+.|+.+++|++++++..++|||| T Consensus 163 ~l~~~i~~~~~~~G~G~S~~Vs~Gn~~~~g~~~~D~L~~l~~Dp~Tk~I~ly~E~~~~~e~~~~~~~~a~~~~~~~KPVV 242 (305) T 2fp4_A 163 TLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 242 (305) T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCSTTCCCEE T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEE T ss_conf 38999999999769987999807988668998899999985498873899998644746778889999997467787579 Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC Q ss_conf 998430157655322001122488889999999999889757889899999999998439 Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300) Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300) +||+|||+|.+++||||||+++++.++++.|.++||||||+++++|+||+++|+++|.++ T Consensus 243 a~k~Grsa~~~~a~sHtGAia~~~~g~~~~~~aa~rqaGVi~v~s~~El~~~l~~~~~~~ 302 (305) T 2fp4_A 243 SFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKR 302 (305) T ss_dssp EEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHHHHHT T ss_pred EEEECCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHC T ss_conf 998324478656466265410478888999999999888868699999999999999864 No 2 >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Probab=100.00 E-value=0 Score=665.65 Aligned_cols=297 Identities=28% Similarity=0.433 Sum_probs=280.7 Q ss_pred CEEEEECCCEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEE----CCCCCCCCCCCCHHHHCCCC-CCCE Q ss_conf 9567717973999888843--779999999862698189976589988687----27745775314078503578-8636 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGK--AGTFHTEQAILYCQTQVVGGIHPKKGSTYW----TGGNVNVPVFTTVAEAKERT-AANA 73 (300) Q Consensus 1 msil~~~~t~vivqGitg~--~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~----~g~~~~iPvy~sv~ea~~~~-~~D~ 73 (300) ||||+||||||||||+||+ ||+||+++|+.|++|||||||||+|||+.+ +.++++||||+||+||++++ ++|+ T Consensus 3 ~s~l~~~~t~~ivqg~~~~~~q~~~~~~~~~~~~~~~v~~~v~p~~g~~~~~~~~G~~~~~iPvy~sV~eA~~~~~~~d~ 82 (334) T 3mwd_B 3 STTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEVDV 82 (334) T ss_dssp CSCCCCTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTCCE T ss_pred CCEEECCCCEEEEECCCCCHHEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCE T ss_conf 22676699659998996775303110163001789988999808988864314588775288765889999985589768 Q ss_pred EEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCC--------EEC Q ss_conf 8862120456788999985-3995899805884688899999984017718940685101355510002--------001 Q gi|254781050|r 74 SVIYVPPSGAGDAIIESIE-AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIG--------IMP 144 (300) Q Consensus 74 avI~VP~~~v~dai~Ea~~-agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lg--------i~p 144 (300) ++|||||++++|+++||++ +|||++||||||||++|+++++++||++|+|||||||+|+|+|+.+++| ++| T Consensus 83 ~vi~VP~~~a~dai~Ea~~~agIk~iviIteGip~~d~~~l~~~A~~~girliGPNc~Gii~p~~~~ig~~~~~~~~i~p 162 (334) T 3mwd_B 83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILA 162 (334) T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHHHHH T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCEECCCCCCEEEECCCCCCCCC T ss_conf 99926678799999999851799889998198988899999999986598889999851164665403440443244477 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHH Q ss_conf 12357786799980541478999999971995167640556744678999999999739987288999705872489999 Q gi|254781050|r 145 GSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAA 224 (300) Q Consensus 145 ~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa 224 (300) .++++||+||+|||||+|+|+++++++++|+|||++||+|||+++|++|.|+|+||++||+|++|+||+|++|..|++++ T Consensus 163 ~~~~~~G~VgivSqSG~l~~ei~~~~~~~g~G~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~Ivly~E~~g~~e~~~a 242 (334) T 3mwd_B 163 SKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKIC 242 (334) T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHH T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH T ss_conf 55477874799965652899999999982998758980588875687499999986449998499998454783799999 Q ss_pred HHHHHHHHCCCCCCEEEEEEEECC---CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC Q ss_conf 999986422675526899843015---7655322001122488889999999999889757889899999999998439 Q gi|254781050|r 225 QFLKDEAKRGRKKPIVGFVAGKTA---PPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300) Q Consensus 225 ~fi~~~~~~~~~KPVva~~~GrtA---p~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300) +++++ ..++||||+||+|||| +++++|||||||++++.+++++|++||||||++++++|+||+++++++|.+| T Consensus 243 ~~~k~---~~~~KPVVa~kaGrsa~~~~~~~~mgHtGAia~~~~gsa~~k~~al~~aGv~vv~~~~el~~~l~~~~~~l 318 (334) T 3mwd_B 243 RGIKE---GRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDL 318 (334) T ss_dssp HHHHT---TSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHH T ss_pred HHHHH---CCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHH T ss_conf 99985---58999889999732677788555553531203689889999999999879968799999999999999988 No 3 >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661} Probab=100.00 E-value=0 Score=639.95 Aligned_cols=289 Identities=51% Similarity=0.854 Sum_probs=279.0 Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 95677179739998888437799999998626981899765899886872774577531407850357886368862120 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) |.||+||||||||||||||+|+||+++|++| ||||||||||+|+|+++.| +|+|+||+|+++++++|+++|+||+ T Consensus 6 ~~i~~~~~t~v~vqGitg~~g~~~~~~~~~~-gt~iv~gVnP~~gG~ev~G----~p~y~sV~e~p~~~~~D~avI~vPa 80 (294) T 2yv1_A 6 KMILLDENTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKGGQNVHG----VPVFDTVKEAVKETDANASVIFVPA 80 (294) T ss_dssp -CCSSCTTCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCTTCEETT----EEEESSHHHHHHHHCCCEEEECCCH T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEC----CCCCCCHHHHHCCCCCCEEEEECCH T ss_conf 4599849986999899882889999999982-9967998788988507848----2155748876337787489996681 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC Q ss_conf 45678899998539958998058846888999999840177189406851013555100020011235778679998054 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300) ++++++++||+++|||.+|++|||||++|+++++++||++|+||+||||+|+++|+..+++++|...++||+||++|||| T Consensus 81 ~~v~~a~~ea~~~Gvk~~viit~g~~~~~~~~l~~~a~~~g~rliGPNc~Gii~p~~~~~~~~~~~~~~~G~igiiSqSG 160 (294) T 2yv1_A 81 PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSG 160 (294) T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCS T ss_pred HHHHHHHHHHHHCCCCEEEEEECEECHHHHHHHHHHHHCCCCEEECCCCCEEECHHHCCCCCCCCCCCCCCCEEEEEECC T ss_conf 67899999999769968999702164311367888876069799989977557644431532540015788768998136 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268 Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300) Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300) +|++++++|++++|+|||++||+|||+++++++.|+|+||++||+|++|+||+|++|..|..++++++ ..+|||| T Consensus 161 ~l~~~i~~~~~~~G~G~S~~vs~Gn~~~~d~~~~d~l~~~~~Dp~T~~I~ly~E~~g~~~~~~~~~~~-----~~~KPVV 235 (294) T 2yv1_A 161 TLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIE-----KMKKPVI 235 (294) T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHHHHT-----TCSSCEE T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH-----HCCCCEE T ss_conf 49999999999839988999944887323434999999752499862899999966865089999998-----6499579 Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC Q ss_conf 99843015765532200112248888999999999988975788989999999999843 Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300) Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300) +||+|||+|.+++||||||+++++.|+++.|.++|||+||+++++++||+++++++|+| T Consensus 236 ~~k~Grsa~~~~a~sHtGala~~~~G~~~~~~aa~~qaGV~~v~~~~el~~~l~~~l~k 294 (294) T 2yv1_A 236 GYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILGK 294 (294) T ss_dssp EEEECC-------------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHHC- T ss_pred EEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCC T ss_conf 99820557864445426664168898899999999977986839999999999998674 No 4 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=100.00 E-value=0 Score=626.32 Aligned_cols=288 Identities=58% Similarity=0.935 Sum_probs=276.3 Q ss_pred EEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 56771797399988884377999999986269818997658998868727745775314078503578863688621204 Q gi|254781050|r 2 SILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 2 sil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) |||+|+||||+|||+|||+|+||+++|++| ||||||||||+|||+++.| +|||+||+|+++.+++|+++|+|||+ T Consensus 1 s~~~~~~t~v~v~G~tg~~g~~~~~~~~~y-gt~vv~gVnP~kgG~~v~G----~Pvy~sV~e~~~~~~~d~avI~VP~~ 75 (288) T 2nu8_A 1 SILIDKNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTTHLG----LPVFNTVREAVAATGATASVIYVPAP 75 (288) T ss_dssp CCSCCTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHHCCCEEEECCCGG T ss_pred CEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEC----CCCCCCHHHHHHCCCCCEEEEECCHH T ss_conf 967479983999888686879999999985-8967998679978636658----64658699986243875699714858 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCC Q ss_conf 56788999985399589980588468889999998401771894068510135551000200112357786799980541 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGT 161 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~ 161 (300) +++|+++||+++|+|.+|||||||||+|+++++++|+++|+|+|||||+|+++|+..+++++|.+.++||+|+++||||+ T Consensus 76 ~v~~a~~e~~~~Gik~~viit~Gf~e~~~~~l~~~a~~~g~riiGPNc~Gii~p~~~~~~~~~~~~~~~G~i~~iSqSG~ 155 (288) T 2nu8_A 76 FCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGT 155 (288) T ss_dssp GHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCH T ss_conf 99999999997799789996489871138999998752497897899766406436541778743357887238970341 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 47899999997199516764055674467899999999973998728899970587248999999998642267552689 Q gi|254781050|r 162 LTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVG 241 (300) Q Consensus 162 l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva 241 (300) |++++++|+.++|+|||++||+|||+++++++.|+|+||++||+|++|+||+|.+++.| +|++.+++...+||||+ T Consensus 156 l~~~i~~~~~~~giG~S~~vs~Gn~a~v~~~~~D~l~~l~~D~~T~~I~ly~E~~~~~~----~f~~~a~~~~~~KPVV~ 231 (288) T 2nu8_A 156 LTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAE----EEAAAYIKEHVTKPVVG 231 (288) T ss_dssp HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH----HHHHHHHHHHCCSCEEE T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCHH----HHHHHHHHHHCCCCEEE T ss_conf 79999998644599876898468775457539999999864668728999997368889----99999999865898799 Q ss_pred EEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH Q ss_conf 984301576553220011224888899999999998897578898999999999984 Q gi|254781050|r 242 FVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300) Q Consensus 242 ~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300) ||+|||++.+++++|+||+++++.+++++|.++|||+|++++++++||.++++++|+ T Consensus 232 lk~Grsa~~~~a~~h~ga~~ag~~~~~~~~~aal~~aGv~~v~~~~el~~~lk~lL~ 288 (288) T 2nu8_A 232 YIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288 (288) T ss_dssp EEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEECSSGGGHHHHHHHHC- T ss_pred EEECCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHC T ss_conf 983466887665654545533887659999999997897582999999999999849 No 5 >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} Probab=100.00 E-value=0 Score=601.30 Aligned_cols=291 Identities=46% Similarity=0.840 Sum_probs=274.4 Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCC-CCCEEEEECC Q ss_conf 956771797399988884377999999986269818997658998868727745775314078503578-8636886212 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERT-AANASVIYVP 79 (300) Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP 79 (300) ||||+|+||||+|||+||++|++|+++|++| |||+||||||+|||+++.| +|+|+||+|+++.+ ++|+++|+|| T Consensus 6 m~~l~~~~t~v~v~G~tg~~g~~~~~~~~~~-gt~~v~gVnP~~gG~~v~G----~p~y~SV~d~~~~~~~vDlavi~vP 80 (297) T 2yv2_A 6 MAVLVDSETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSEVHG----VPVYDSVKEALAEHPEINTSIVFVP 80 (297) T ss_dssp ---CCSTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHCTTCCEEEECCC T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEC----EECCCCHHHHHCCCCCCCEEEEECC T ss_conf 9999779981999899883757999999981-9967988779988637828----6324708887417888648999047 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC Q ss_conf 04567889999853995899805884688899999984017718940685101355510002001123577867999805 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS 159 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS 159 (300) ++.++++++||+++|+|.+||+|+||+++|+++++++||++|+|++||||+|+++|+..+.+++|...++||+|+++||| T Consensus 81 a~~v~~~v~e~~~~Gvk~~viitaGf~e~~~~~l~~~a~~~g~rliGPNc~G~i~p~~~~~~~~~~~~~~~G~va~iSQS 160 (297) T 2yv2_A 81 APFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRS 160 (297) T ss_dssp GGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESC T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEE T ss_conf 31009999999877998899967998805379999976631988965886514557754589776001689876799733 Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 41478999999971995167640556744678999999999739987288999705872489999999986422675526 Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPI 239 (300) Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPV 239 (300) |+|++++++|++++|+|||+++|+|||++.++++.|+|+||++||+|++|+||+|.+++.+...+++. ++...+||| T Consensus 161 G~l~~~i~~~~~~~g~G~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~~~~~~~~~~~~---~~~~~~KPV 237 (297) T 2yv2_A 161 GTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMI---KKGEFTKPV 237 (297) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHHHHHH---HTTSCCSCE T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHH---HHCCCCCCE T ss_conf 58999999999984997578995378753575177999998647886679999970365305777887---734799988 Q ss_pred EEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC Q ss_conf 899843015765532200112248888999999999988975788989999999999843 Q gi|254781050|r 240 VGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300) Q Consensus 240 va~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300) |+||+|||++.++++|||||++++..|+++.+.++|||+||+++++++||+++++++|++ T Consensus 238 v~lk~Grs~~~~~a~sHTGal~~~~aG~~~~~~aa~~qaGVi~v~~~~el~~~lk~~l~r 297 (297) T 2yv2_A 238 IAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALRR 297 (297) T ss_dssp EEEESCCC------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC-- T ss_pred EEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC T ss_conf 999951578743233325441268888899999999987985919999999999998766 No 6 >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Probab=100.00 E-value=0 Score=566.74 Aligned_cols=287 Identities=53% Similarity=0.871 Sum_probs=272.2 Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHH Q ss_conf 67717973999888843779999999862698189976589988687277457753140785035788636886212045 Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300) Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300) ||+||+|||+|||+||++|++|+.+|++| |||+|+||||+|+|+++.| +|+|+||+|+++.+++|+++|+||+++ T Consensus 2 ~~~~~~~~v~v~g~tg~~~~~~~~~~~~~-g~~~v~gVnP~~~G~ev~G----~p~y~Sv~dlp~~~~vDlavi~vPa~~ 76 (288) T 1oi7_A 2 ILVNRETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGMEVLG----VPVYDTVKEAVAHHEVDASIIFVPAPA 76 (288) T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHSCCSEEEECCCHHH T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCEEEEC----CCCCCCHHHHHCCCCCCEEEEECCHHH T ss_conf 78459983999899784888999999980-9967998758988608879----423474777425778767999617899 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCH Q ss_conf 67889999853995899805884688899999984017718940685101355510002001123577867999805414 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTL 162 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l 162 (300) ++++++||+++|+|.++|+|+||+|.++++++++|+++|+|++||||+|+++|+..++++.+...++||+++++||||++ T Consensus 77 v~~~~~e~~~~Gvk~~vi~s~Gf~E~~~~~l~~~a~~~g~riiGPNc~Gi~n~~~~~~~~~~~~~~~~G~i~~iSqSG~~ 156 (288) T 1oi7_A 77 AADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTL 156 (288) T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHH T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCCEEEECCCCCCCCCCEEEEEECCHH T ss_conf 99999999867998899955898744678897641257957887886633557644476358656889981169842137 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 78999999971995167640556744678999999999739987288999705872489999999986422675526899 Q gi|254781050|r 163 TYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGF 242 (300) Q Consensus 163 ~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~ 242 (300) +++++++++++|+|+|+++|+||++++++++.|+|+||++||+|++|+||+|.++..+. |+..+++...+||||++ T Consensus 157 ~~~~~~~~~~~g~g~s~~vs~Gn~a~vd~~~~d~l~~l~~D~~T~vI~ly~E~~~~~~~----f~~~~~~~~~kKpVV~~ 232 (288) T 1oi7_A 157 TYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEE----EAAAWVKDHMKKPVVGF 232 (288) T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHH----HHHHHHHHHCCSCEEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCHHH----HHHHHHHHHCCCCEEEE T ss_conf 99999999976988699971688765783299999997159997689999996888999----99999997357988999 Q ss_pred EEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH Q ss_conf 84301576553220011224888899999999998897578898999999999984 Q gi|254781050|r 243 VAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLG 298 (300) Q Consensus 243 ~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300) |+||+++.++++|||||+++++.|+++.+.++|||+||+++++++||.++++++|+ T Consensus 233 k~G~s~~~~~a~sHTgala~~~~G~~~~~~aaf~qaGVi~v~~~~el~d~ak~~Lg 288 (288) T 1oi7_A 233 IGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKALG 288 (288) T ss_dssp ESCC------------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHC T ss_pred ECCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHC T ss_conf 77643763335430544026788889999999997897585999999999999629 No 7 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=100.00 E-value=0 Score=402.17 Aligned_cols=273 Identities=23% Similarity=0.350 Sum_probs=233.9 Q ss_pred CEEEEECCCEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEE Q ss_conf 9567717973999888843---7799999998626981899765899886872774577531407850357886368862 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGK---AGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIY 77 (300) Q Consensus 1 msil~~~~t~vivqGitg~---~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~ 77 (300) |.-|++..| |.|-|.+.+ .|....++.+++ ++.-+..|||+. .++.| +|+|+|++|.++. +|++||+ T Consensus 2 L~~Lf~P~S-IAvVGaS~~~~~~g~~~~~~l~~~-~~G~i~~Vnp~~--~~i~G----~~~y~sl~dlp~~--~Dlavi~ 71 (457) T 2csu_A 2 LDYFFNPKG-IAVIGASNDPKKLGYEVFKNLKEY-KKGKVYPVNIKE--EEVQG----VKAYKSVKDIPDE--IDLAIIV 71 (457) T ss_dssp CCTTTSCSE-EEEETCCSCTTSHHHHHHHHHTTC-CSSEEEEECSSC--SEETT----EECBSSTTSCSSC--CSEEEEC T ss_pred CHHHCCCCE-EEEECCCCCCCCCHHHHHHHHHHC-CCCCEEEECCCC--CEECC----EECCCCHHHCCCC--CCEEEEE T ss_conf 045279986-999886799986189999999857-996099978998--70798----7687998886999--8989999 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCH------HHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCC Q ss_conf 120456788999985399589980588468------88999999840177189406851013555100020011235778 Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPV------LDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKG 151 (300) Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~------~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG 151 (300) ||++++++++.||+++|+|.++|+|+||++ +++++++++|+++|+|++||||+|+++|. .++.+.+...++|| T Consensus 72 vp~~~v~~~~~e~~~~gv~~~vi~s~Gf~e~~~~g~~~~~~l~~~a~~~g~riiGPNc~G~i~~~-~~~~~~~~~~~~~G 150 (457) T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIMNTH-VDLNATFITVAKKG 150 (457) T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEEEGG-GTEEEESSCCCEEC T ss_pred ECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCC-CCCCCCCCCCCCCC T ss_conf 57788899999999759988997166665322212468999999887569779636866630663-12466544316999 Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 67999805414789999999719951676405567446789999999997399872889997058724899999999864 Q gi|254781050|r 152 SVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEA 231 (300) Q Consensus 152 ~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~ 231 (300) +||+|||||++++++++|+.++|+|||++||+||+. ++++.|+|+||.+||+|++|++|.|-.+. ..+|++.++ T Consensus 151 ~ialvsqSG~l~~~i~~~~~~~g~G~s~~vs~Gn~~--~v~~~d~l~~l~~D~~t~~I~l~~E~~~~----~~~f~~aa~ 224 (457) T 2csu_A 151 NVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMA--DVDFAELMEYLADTEEDKAIALYIEGVRN----GKKFMEVAK 224 (457) T ss_dssp SEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCC--SSCHHHHHHHHTTCSSCCEEEEEESCCSC----HHHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHCCCCCCCEEEEEEECCCC----HHHHHHHHH T ss_conf 779996672599999999996488814898348867--87889999996069987479999955755----789999999 Q ss_pred HCCCCCCEEEEEEEECCCCCC-CCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHH Q ss_conf 226755268998430157655-322001122488889999999999889757889899999999 Q gi|254781050|r 232 KRGRKKPIVGFVAGKTAPPGR-TMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLV 294 (300) Q Consensus 232 ~~~~~KPVva~~~GrtAp~g~-~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~ 294 (300) +...+||||++|.|||.+..+ ..+|||+++ ++...+.++|||+|++++++++||.+.++ T Consensus 225 ~a~~~kpvvvlk~Grs~~g~~aa~shtgala----g~~~~~~a~~~~~Gvv~v~~~~el~d~~~ 284 (457) T 2csu_A 225 RVTKKKPIIALKAGKSESGARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTIDEMLSMAR 284 (457) T ss_dssp HHHHHSCEEEEECC----------------------CHHHHHHHHHHTTCEEESSHHHHHHHHT T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 9866899899957777655322135554345----73899999999559872799999999999 No 8 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=100.00 E-value=0 Score=354.89 Aligned_cols=198 Identities=21% Similarity=0.344 Sum_probs=171.5 Q ss_pred CCCCCCHHHHCCC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC Q ss_conf 7531407850357-886368862120456788999985399589980588468889999998401771894068510135 Q gi|254781050|r 56 VPVFTTVAEAKER-TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300) Q Consensus 56 iPvy~sv~ea~~~-~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300) +|.|++..+|.+. +++|+++|+||+++|+++++||+++|++ ++|||+|||++|+++|+++|+++|+|++||||+|+++ T Consensus 21 ~~~~~~~~~a~~~~p~~dlavI~VP~~~v~~~~~ea~~~Gv~-~vi~s~gv~~~de~~l~~~A~~~G~rv~GPNC~G~i~ 99 (480) T 3dmy_A 21 LTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMI 99 (480) T ss_dssp CEEESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHHHHHHHTTCCEECSSCCEEEE T ss_pred CCCCCCHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC T ss_conf 676551999973379999899970889999999999977996-9998498998999999999997799999899844535 Q ss_pred CCCHHCCEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCC----CCCCHHHHHHHHHCCCCCCEEE Q ss_conf 551000200112357786799980541478999999971995167640556744----6789999999997399872889 Q gi|254781050|r 135 PDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPV----KGTEFIDVLELFLADEATESIV 210 (300) Q Consensus 135 p~~~~lgi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~----~G~~~~d~L~~~~~Dp~T~~Iv 210 (300) |+ .++.+.+.++||+||+|||||++++++++++.++|+|||++||+||+.+ .|+++.|+|+||++||+|++|+ T Consensus 100 ~~---~~l~f~~~~~~G~IgivSqSG~~~~~i~~~~~~~G~G~S~~vs~Gn~~~~~~v~gi~~~d~l~~l~~Dp~T~vIv 176 (480) T 3dmy_A 100 AG---TPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLA 176 (480) T ss_dssp TT---EEEESCCCCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEE T ss_pred CC---CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEE T ss_conf 89---885336658998458996473699999999997499867999838976656536863999999970499960899 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCEEEEEC Q ss_conf 9970587248999999998642267552689984301576553-22001122 Q gi|254781050|r 211 MVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRT-MGHAGAVI 261 (300) Q Consensus 211 l~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~-~gHaGAi~ 261 (300) ||+|..+..+. |...+++...+||||+|++|||++..+. -+|+++.. T Consensus 177 l~~E~~~~~~~----~~~~~~a~~~~KPVV~~k~Grs~~~~~~a~shta~~l 224 (480) T 3dmy_A 177 FVSKPPAEAVR----LKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSL 224 (480) T ss_dssp EEESCCCHHHH----HHHHHHHHHHCSCEEEEETTCCCSSSEETTEEEESSH T ss_pred EEEECCCCHHH----HHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHHHH T ss_conf 99824886999----9999998618997899984688876311341013329 No 9 >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Probab=99.67 E-value=2.1e-16 Score=123.62 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=99.9 Q ss_pred EEEECCCEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 677179739998888---43779999999862698189976589988687277457753140785035788636886212 Q gi|254781050|r 3 ILVDKNTKVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 3 il~~~~t~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) +|++.. +|.|-|.+ ++.|....+++++++. + +..|+|...++++.| +|+|.|+.|.++. +|+++|++| T Consensus 9 ~L~~pk-sIAVVGaS~~~~k~g~~v~~~L~~~g~-~-~~~v~p~~~~~~i~G----~~~y~sl~~ip~~--vDlvvi~~p 79 (145) T 2duw_A 9 ILTSTR-TIALVGASDKPDRPSYRVMKYLLDQGY-H-VIPVSPKVAGKTLLG----QQGYATLADVPEK--VDMVDVFRN 79 (145) T ss_dssp HHHHCC-CEEEESCCSCTTSHHHHHHHHHHHHTC-C-EEEECSSSTTSEETT----EECCSSTTTCSSC--CSEEECCSC T ss_pred HHHCCC-EEEEECCCCCCCCCHHHHHHHHHHCCC-C-EEEECCCCCCCCCCC----EEEECCHHHCCCC--CEEEEEECC T ss_conf 986789-599982059999839999999996799-4-488788754432188----1575246458998--649999637 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCC Q ss_conf 045678899998539958998058846888999999840177189406851013555 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPD 136 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~ 136 (300) +..+++++.||+++|++.+.+..... ..++.++|+++|+|++||||+|+.+|. T Consensus 80 ~~~v~~~~~~~~~~g~k~v~~q~g~~----~~~~~~~a~~~Gi~vigpnClgv~~p~ 132 (145) T 2duw_A 80 SEAAWGVAQEAIAIGAKTLWLQLGVI----NEQAAVLAREAGLSVVMDRCPAIELPR 132 (145) T ss_dssp STHHHHHHHHHHHHTCCEEECCTTCC----CHHHHHHHHTTTCEEECSCCHHHHSTT T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHH----HHHHHHHHHHCCCEEECCCCCEEECCC T ss_conf 32589999999974998787325166----499999999959989959973647511 No 10 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=99.66 E-value=9.2e-16 Score=119.54 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=93.6 Q ss_pred EEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 39998888---437799999998626981899765899886872774577531407850357886368862120456788 Q gi|254781050|r 10 KVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 10 ~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) +|.|-|.. ++.|....++++.+ |-+ |..|||+. +++.| +|+|.|+.|.++. +|++++|+|+++++++ T Consensus 16 sIAVVGaS~~~~k~g~~v~~~l~~~-g~~-V~pVnP~~--~~I~G----~~~y~sl~dip~~--iDlvvi~~p~~~~~~i 85 (138) T 1y81_A 16 KIALVGASKNPAKYGNIILKDLLSK-GFE-VLPVNPNY--DEIEG----LKCYRSVRELPKD--VDVIVFVVPPKVGLQV 85 (138) T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHT-TCE-EEEECTTC--SEETT----EECBSSGGGSCTT--CCEEEECSCHHHHHHH T ss_pred EEEEECCCCCCCCHHHHHHHHHHHC-CCE-EEEECCCC--CEECC----EECCCCCCCCCCC--CEEEEEEECHHHHHHH T ss_conf 7999921699998299999999978-998-99988998--48835----2544420127875--3079998178887999 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCC Q ss_conf 99998539958998058846888999999840177189406851013555 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPD 136 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~ 136 (300) +.||+++|+|.+.+ ..|. +. .++.+++++.|++++||||+|+.++. T Consensus 86 l~e~~~~g~k~v~~-q~G~-~~--~e~~~~a~~~Gi~vigpnC~gv~~~~ 131 (138) T 1y81_A 86 AKEAVEAGFKKLWF-QPGA-ES--EEIRRFLEKAGVEYSFGRCIMVETSN 131 (138) T ss_dssp HHHHHHTTCCEEEE-CTTS-CC--HHHHHHHHHHTCEEECSCCHHHHC-- T ss_pred HHHHHHCCCCEEEE-ECCH-HH--HHHHHHHHHCCCEEECCCCCEEEECC T ss_conf 99997569997896-0764-41--99999999849989907905287156 No 11 >2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* Probab=99.52 E-value=7.6e-14 Score=107.32 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=96.4 Q ss_pred EEECCCEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 77179739998888---437799999998626981899765899886872774577531407850357886368862120 Q gi|254781050|r 4 LVDKNTKVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 4 l~~~~t~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) |.+.. .+.|-|.. ++.|....++++++ |-+ |..|||.. .++.| +|+|.|+.|.++. +|++++|+|+ T Consensus 19 L~~~k-sIAVVGaS~~~~k~g~~v~~~L~~~-g~~-V~pVnP~~--~~i~G----~~~y~sl~di~~~--vD~v~v~~p~ 87 (144) T 2d59_A 19 LTRYK-KIALVGASPKPERDANIVMKYLLEH-GYD-VYPVNPKY--EEVLG----RKCYPSVLDIPDK--IEVVDLFVKP 87 (144) T ss_dssp HHHCC-EEEEETCCSCTTSHHHHHHHHHHHT-TCE-EEEECTTC--SEETT----EECBSSGGGCSSC--CSEEEECSCH T ss_pred HHCCC-EEEEECCCCCCCCCHHHHHHHHHHC-CCE-EEEECCCC--EEECC----EECCCCHHHCCCC--CCEEEEECCH T ss_conf 87789-4999863699997299999999977-997-99989877--06778----6335601203788--7379997288 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC Q ss_conf 4567889999853995899805884688899999984017718940685101355 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300) .++++++.||.+.|+|.+++.+.++.+ +..+.|+++|++++||||+.+..+ T Consensus 88 ~~v~~il~~~~~~g~k~v~~~~g~~~e----e~~~~a~~~gi~~v~~~C~~v~~~ 138 (144) T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAGLIIVANRCMMREHE 138 (144) T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTTCEEEESCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHCCCEEECCCCHHHHHH T ss_conf 888999999997599999982464499----999999996995790362168878 No 12 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=99.44 E-value=2.1e-13 Score=104.49 Aligned_cols=114 Identities=16% Similarity=0.217 Sum_probs=95.0 Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 739998888---43779999999862698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 9 TKVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) .++.|-|.+ ++.|....++++.+ |-+ +..|+|.-.++++.| .|+|.|+.|.++. +|++++|+|+..+++ T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~-g~~-~~~v~p~~~~~~i~g----~~~~~sl~dip~~--vDlv~i~vp~~~v~~ 85 (140) T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ-GYR-VLPVNPRFQGEELFG----EEAVASLLDLKEP--VDILDVFRPPSALMD 85 (140) T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT-TCE-EEEECGGGTTSEETT----EECBSSGGGCCSC--CSEEEECSCHHHHTT T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHC-CCC-EEEECCCCCCCEECC----EEECCCHHHCCCC--CCEEEEEECHHHHHH T ss_conf 96999810699998399999999978-993-388787776535568----2720656764898--738999808899999 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC Q ss_conf 8999985399589980588468889999998401771894068510135 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300) ++.||++.|++. +++..|+-.. ++.++|+++|+++|+|||+++-- T Consensus 86 ~v~e~~~~g~~~-v~~q~G~~~~---e~~~~a~~~Gi~vI~~~C~~ve~ 130 (140) T 1iuk_A 86 HLPEVLALRPGL-VWLQSGIRHP---EFEKALKEAGIPVVADRCLMVEH 130 (140) T ss_dssp THHHHHHHCCSC-EEECTTCCCH---HHHHHHHHTTCCEEESCCHHHHH T ss_pred HHHHHHHCCCCE-EEECCCCCCH---HHHHHHHHCCCEEECCCCCHHHH T ss_conf 999999629898-9989896899---99999999599799289427699 No 13 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=99.23 E-value=6.4e-11 Score=88.64 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=85.6 Q ss_pred EEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 39998888---437799999998626981899765899886872774577531407850357886368862120456788 Q gi|254781050|r 10 KVLVQGLT---GKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 10 ~vivqGit---g~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) ++.|-|.+ +|.|..-.+.++.++. + |..|||.. .++.| +|+|+++ |.++ .+|++++|+||+.+++. T Consensus 6 ~iaVvGaS~~~~k~g~~v~~~L~~~G~-~-V~pVnP~~--~~I~G----~~~~~sl-~~p~--~iD~v~i~~p~~~~~~~ 74 (122) T 3ff4_A 6 KTLILGATPETNRYAYLAAERLKSHGH-E-FIPVGRKK--GEVLG----KTIINER-PVIE--GVDTVTLYINPQNQLSE 74 (122) T ss_dssp CEEEETCCSCTTSHHHHHHHHHHHHTC-C-EEEESSSC--SEETT----EECBCSC-CCCT--TCCEEEECSCHHHHGGG T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCC-E-EEEECCCC--CCCCE----EEEEECC-CCCC--CCCEEEEEECHHHHHHH T ss_conf 499996669999829999999997899-8-99988877--61000----5899745-5678--87579999588998999 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE Q ss_conf 99998539958998058846888999999840177189406851013 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300) +.||+++|+|. +.+..|.-. .++.++|+++|++++ +||+.++ T Consensus 75 v~e~~~~g~k~-vw~q~G~~~---e~~~~~a~~~Gi~vi-~~C~lv~ 116 (122) T 3ff4_A 75 YNYILSLKPKR-VIFNPGTEN---EELEEILSENGIEPV-IGCTLVM 116 (122) T ss_dssp HHHHHHHCCSE-EEECTTCCC---HHHHHHHHHTTCEEE-ESCHHHH T ss_pred HHHHHHCCCCE-EEEECCCCC---HHHHHHHHHCCCEEE-CCCEEEE T ss_conf 99998539999-999369879---999999999699799-5782699 No 14 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=98.60 E-value=3.3e-05 Score=52.16 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=116.2 Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE----ECCCCEEECCCC---HHC--------CE--E-- Q ss_conf 78899998-5399589980588468889999998401771894----068510135551---000--------20--0-- Q gi|254781050|r 84 GDAIIESI-EAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI----GPNCPGILTPDS---CKI--------GI--M-- 143 (300) Q Consensus 84 ~dai~Ea~-~agik~iviiteGip~~d~~~l~~~A~~~g~rii----GPNc~Gii~p~~---~~l--------gi--~-- 143 (300) .|.+.... |-.++.++++.|++......+..+.++..+..+| |-+-.+.-..+. ..+ +. . T Consensus 160 ~d~l~~l~~Dp~T~vIvl~~E~~~~~~~~~~~~~a~~~~KPVV~~k~Grs~~~~~~a~shta~~l~eaA~~a~~L~~~~~ 239 (480) T 3dmy_A 160 LTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTA 239 (480) T ss_dssp HHHHHHHHTCTTCCEEEEEESCCCHHHHHHHHHHHHHHCSCEEEEETTCCCSSSEETTEEEESSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCC T ss_conf 99999970499960899998248869999999998618997899984688876311341013329999999876513765 Q ss_pred C-C--CCCCCCCEEEEEECCCHHHHHHHHHHHCCCC---------------EEEEEECCCCCCC-C--------CCHHHH Q ss_conf 1-1--2357786799980541478999999971995---------------1676405567446-7--------899999 Q gi|254781050|r 144 P-G--SIFRKGSVGILSRSGTLTYEAVFQTSQEGLG---------------QSTAVGIGGDPVK-G--------TEFIDV 196 (300) Q Consensus 144 p-~--~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G---------------~S~~VsiG~D~~~-G--------~~~~d~ 196 (300) + . .....+.+....-.|+|+++.+..+....-. ...++.+|+|.+. | ..+.+. T Consensus 240 ~~~~~~~~~~~~i~gl~sGGtLa~ea~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~dlgdd~~T~GrphpmiDP~~r~~~ 319 (480) T 3dmy_A 240 RRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQL 319 (480) T ss_dssp HHHHHCCCSCCEEEEEESCHHHHHHHHHHHHHHTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTTCCHHHHHH T ss_pred CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHH T ss_conf 31114554333202203621599998999886415677742000222047888642347625424686656586899999 Q ss_pred HHHHHCCCCCCEEEEEEECC-CHHH---HHHHHHHHH---HHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH Q ss_conf 99997399872889997058-7248---999999998---6422675526899843015765532200112248888999 Q gi|254781050|r 197 LELFLADEATESIVMVGEIG-GSAE---EEAAQFLKD---EAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE 269 (300) Q Consensus 197 L~~~~~Dp~T~~Ivl~gEiG-G~~E---~~aa~fi~~---~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~ 269 (300) |..+.+||++.+|+|..-+| |..+ ...++.+++ +++....||||++..|....+ -..+ T Consensus 320 l~~~~~Dp~v~vVLldvVlg~ga~~dpa~~l~~aI~~a~~a~~~~~~~~vVa~v~Gt~~dp---------------q~~~ 384 (480) T 3dmy_A 320 IADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDP---------------QCRS 384 (480) T ss_dssp HHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTST---------------TCHH T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---------------CCHH T ss_conf 9998459987789996303576565728889999999998644289816999975777786---------------2479 Q ss_pred HHHHHHHHCCCEECCCHHHHHHHHHHHHH Q ss_conf 99999998897578898999999999984 Q gi|254781050|r 270 DKINAMKEAGICIAPSPARIGRSLVELLG 298 (300) Q Consensus 270 ~k~~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300) ...++|++|||.+.+|+++-..+..+++. T Consensus 385 ~~~~~L~~AGV~v~~S~~~A~r~a~~l~~ 413 (480) T 3dmy_A 385 QQIATLEDAGIAVVSSLPEATLLAAALIH 413 (480) T ss_dssp HHHHHHHHTTCEECSSHHHHHHHHHHHTS T ss_pred HHHHHHHHCCCEEECCHHHHHHHHHHHHC T ss_conf 99999997898342888999999999708 No 15 >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} Probab=98.58 E-value=6.1e-07 Score=63.21 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=86.7 Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 6771797399988884377999999986269818997658--99886872774577531407850357886368862120 Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP--KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P--gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) +.-+|.-||.|.| +|+.|+.+.+...+-.+..+|+.+.+ .|.+.... .++.|+.+.+ ..++|+.+++.|+ T Consensus 4 m~~~kkirv~iiG-~G~mG~~~~~~l~~~~~~elv~v~~~~~~~~~~~~~----~~~~~~d~~~---~~~~D~vi~~t~~ 75 (304) T 3bio_A 4 MTDDKKIRAAIVG-YGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQ----PFRVVSDIEQ---LESVDVALVCSPS 75 (304) T ss_dssp ----CCEEEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECC-------CCT----TSCEESSGGG---SSSCCEEEECSCH T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCC----CCCCHHHHHH---CCCCCEEEEECCC T ss_conf 7668984799989-869999999999739994899998589888443226----8786766986---3589879990795 Q ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHCCCCE-EEECCC-CEE Q ss_conf 45678899998539958998058-84688899999984017718-940685-101 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITE-GIPVLDMVRVKARLEKSSSR-LIGPNC-PGI 132 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviite-Gip~~d~~~l~~~A~~~g~r-iiGPNc-~Gi 132 (300) ....+.+..|+++|+..+...+. +....+..++.+.|+++|+. +.++|. +|+ T Consensus 76 ~~~~~~~~~~l~~g~~vv~~~~~~~~~~e~~~~l~~aa~~~g~~~~~~~~~spG~ 130 (304) T 3bio_A 76 REVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGS 130 (304) T ss_dssp HHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBH T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHH T ss_conf 4479999999983897798368878899999999999998498089945617889 No 16 >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Probab=98.44 E-value=1.6e-06 Score=60.53 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=93.2 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC Q ss_conf 1797399988884377999999986269818997658998-------868727745775314078503578863688621 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG-------STYWTGGNVNVPVFTTVAEAKERTAANASVIYV 78 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg-------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V 78 (300) +.+-||.|-|.+||.|+.-.+......+-.+++++.+... |+..+-....++++++..+..+ .+|+.|-|. T Consensus 3 ~~~IkI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~i~~~~~~~~g~d~g~~~~~~~~~~~~~~~l~~~~~--~~DViIDFS 80 (273) T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFT 80 (273) T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECS T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCCHHHHCCCCCCCCEEECCHHHHCC--CCCEEEECC T ss_conf 898889999999978999999997589978999980589700155478760777678611146777333--578699798 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC-CEE Q ss_conf 204567889999853995899805884688899999984017718940685-101 Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC-PGI 132 (300) Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc-~Gi 132 (300) .|..+.+.+.-|.+.+++.+ +=|-|+...+..++...++...+ ++-||- +|+ T Consensus 81 ~p~~~~~~~~~~~~~~~p~V-iGTTG~~~~~~~~~~~~~~~~~v-l~apNfSlGv 133 (273) T 1dih_A 81 RPEGTLNHLAFCRQHGKGMV-IGTTGFDEAGKQAIRDAAADIAI-VFAANFSVGV 133 (273) T ss_dssp CHHHHHHHHHHHHHTTCEEE-ECCCCCCHHHHHHHHHHTTTSCE-EECSCCCHHH T ss_pred CHHHHHHHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHCCCCE-ECCCCHHHHH T ss_conf 98999999999996287679-95479860137788776337725-6377065889 No 17 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=98.44 E-value=9.6e-07 Score=61.98 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=90.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) ||.|.| +|..|..|.+....-.+..+++.+.|...--....+..++|.|.+..|..+..++|+.+|..|+..-.+.+.+ T Consensus 6 rvgiIG-~G~~g~~h~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~h~~~~~~ 84 (344) T 3euw_A 6 RIALFG-AGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITR 84 (344) T ss_dssp EEEEEC-CSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHH T ss_pred EEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHCCCCCCEEEECCCCCCHHHHHHH T ss_conf 798999-7299999999997189948999988999999999998499778999999648998889971543110356799 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCC Q ss_conf 98539958998058846888999999840177189-40685 Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNC 129 (300) Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc 129 (300) |+++|...++=-.=.....+..++++.+++++..+ +|-|. T Consensus 85 al~~gk~Vl~EKP~a~~~~e~~~l~~~~~~~~~~~~v~~~~ 125 (344) T 3euw_A 85 AVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNR 125 (344) T ss_dssp HHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGG T ss_pred HHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 88513751102322001345666666554133322124312 No 18 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=98.42 E-value=4.2e-06 Score=57.90 Aligned_cols=130 Identities=15% Similarity=0.285 Sum_probs=88.1 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEE---------------EECCC--CCCC---CCCHHHHHHHHHCCCCCCEE Q ss_conf 7867999805414789999999719951676---------------40556--7446---78999999999739987288 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTA---------------VGIGG--DPVK---GTEFIDVLELFLADEATESI 209 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~---------------VsiG~--D~~~---G~~~~d~L~~~~~Dp~T~~I 209 (300) -.+++++|-||+++..+++.+.+.|+-+... .+..| |... ...|.+.++.+.+||++++| T Consensus 293 g~rvaivs~sGG~~~l~aD~~~~~Gl~l~~ls~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~dp~vD~v 372 (457) T 2csu_A 293 GNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDML 372 (457) T ss_dssp SSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEE T ss_conf 98189997781688999999998599858999999999862155655776975388999999999999999739997989 Q ss_pred EEEEECC----CHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCC Q ss_conf 9997058----724899999999864226755268998430157655322001122488889999999999889757889 Q gi|254781050|r 210 VMVGEIG----GSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPS 285 (300) Q Consensus 210 vl~gEiG----G~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s 285 (300) +++.-+. ....+.+...++..++...+|||++...|... .+.-...|+++|+.+-++ T Consensus 373 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kPvv~~~~g~~~-------------------~~~~~~~l~~~Gip~f~~ 433 (457) T 2csu_A 373 IAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV-------------------SEKAKELLEKNGIPTYER 433 (457) T ss_dssp EEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT-------------------THHHHHHHHTTTCCEESS T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------------HHHHHHHHHHCCCCCCCC T ss_conf 9997478656787479999999999984899978999789766-------------------099999998689986799 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8999999999984 Q gi|254781050|r 286 PARIGRSLVELLG 298 (300) Q Consensus 286 ~~el~~~l~~~l~ 298 (300) |++-...++.++. T Consensus 434 pe~a~~Al~~l~~ 446 (457) T 2csu_A 434 PEDVASAAYALVE 446 (457) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 19 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Probab=98.35 E-value=1.1e-05 Score=55.27 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=88.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 973999888843779999999862698189976589988-68727745775-3140785035788636886212045678 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS-TYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg-~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) .=|+-|.|. |..|..|.+......+-++++-+.|.+.- +.+ .+..++| +|++..|..+..++|+.+|+.|+..=.+ T Consensus 5 kik~giIG~-G~i~~~h~~~l~~~~~~~v~~v~d~~~~~~~~~-a~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~H~~ 82 (329) T 3evn_A 5 KVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAF-ANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329) T ss_dssp CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC----CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH T ss_pred CCEEEEECC-HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH-HHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHHH T ss_conf 868999988-499999999998689928999988999999999-998599806689999962889888990582665557 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 899998539958998058846888999999840177189 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) .+.+|+++|...++=-.=.....+..+|.+.++++|+++ T Consensus 83 ~~~~al~~gk~vl~EKP~a~~~~e~~~l~~~~~~~~~~~ 121 (329) T 3evn_A 83 VAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFL 121 (329) T ss_dssp HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC T ss_conf 789999879989997245455899865444553135420 No 20 >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Probab=98.33 E-value=7.1e-06 Score=56.43 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=93.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---CC----EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 739998888437799999998626981899765899---88----68727745775314078503578863688621204 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK---GS----TYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk---gg----~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) =||.|-|.+||.|+.-.+...+..+-.+|+++.... -| +....+..++|++++..++.. ++|+.|=|..|. T Consensus 22 ikVaI~Ga~GrMG~~i~~~i~~~~~~~lv~~i~~~~~~~~g~d~~~~~~~~~~~i~i~~d~~~~~~--~~DVvIDFS~p~ 99 (288) T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDFSQPQ 99 (288) T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEECSCHH T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCC--CCCEEEECCCCH T ss_conf 889998999878999999998389978999982588733476467760788668523378677144--488899899806 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC-CEE Q ss_conf 567889999853995899805884688899999984017718940685-101 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC-PGI 132 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc-~Gi 132 (300) .+.+.+.-|.+.+++ +|+=|-|+...+...+.+.++...+ ++-||- +|+ T Consensus 100 ~~~~~~~~~~~~~~p-lViGTTG~~~~~~~~i~~~~~~~~i-l~a~NfS~Gv 149 (288) T 3ijp_A 100 ASVLYANYAAQKSLI-HIIGTTGFSKTEEAQIADFAKYTTI-VKSGNMSLGV 149 (288) T ss_dssp HHHHHHHHHHHHTCE-EEECCCCCCHHHHHHHHHHHTTSEE-EECSCCCHHH T ss_pred HHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHCCCE-EEECCCHHHH T ss_conf 768899999873960-7983055442259999998533988-8866400779 No 21 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=98.27 E-value=4e-06 Score=58.01 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=92.6 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 17973999888843779999999862698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) -|.-|+.+.|. |..|..|.+....-.+..++|-+.|.+.-.+.. ...++|+|++..|..+..++|+.+|+.|+..-.+ T Consensus 3 mk~~rigiIG~-G~~g~~h~~~~~~~~~~~l~av~d~~~~~~~~~-~~~~~~~~~~~~ell~~~~iD~V~i~tp~~~h~~ 80 (359) T 3e18_A 3 LKKYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAA-AQKGLKIYESYEAVLADEKVDAVLIATPNDSHKE 80 (359) T ss_dssp CCCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-HTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHH T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH-HHCCCCCCCCHHHHHCCCCCCEEEECCCCHHHHH T ss_conf 88771999946-799999999998589958999988999999999-8629970199999955999898998788055235 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECC Q ss_conf 8999985399589980588468889999998401771894-068 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPN 128 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii-GPN 128 (300) .+..|+++|...++=-.=.....+..+|.+.|++++..+. |.| T Consensus 81 ~~~~al~~gkhv~~EKP~a~~~~e~~~l~~~~~~~~~~~~v~~~ 124 (359) T 3e18_A 81 LAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQN 124 (359) T ss_dssp HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECG T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 67888853981999578642087887889999752765422222 No 22 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Probab=98.26 E-value=1.8e-06 Score=60.27 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=88.3 Q ss_pred EEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 3999888843779-999999862698189976589988687277457753140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) ||-|.|. |..|. +|.+......+.++||-+.+.+.-.....+..++|+|++..|..+..++|+.+|++|+..=.+.+. T Consensus 4 rvgiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~ 82 (387) T 3moi_A 4 RFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV 82 (387) T ss_dssp EEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH T ss_pred EEEEECC-CHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHCCCCCCEEEECCCCHHHHHHHH T ss_conf 6999989-699999999999739791999998799999999999859985899999965999988999089678999999 Q ss_pred HHHHCCCCEEEEECCC---CCHHHHHHHHHHHHCCCCEEE-ECCC Q ss_conf 9985399589980588---468889999998401771894-0685 Q gi|254781050|r 89 ESIEAEIPLIVCITEG---IPVLDMVRVKARLEKSSSRLI-GPNC 129 (300) Q Consensus 89 Ea~~agik~iviiteG---ip~~d~~~l~~~A~~~g~rii-GPNc 129 (300) +|+++|.. ++.|- ....+..+|.+.|+++|+.+. |.|. T Consensus 83 ~al~~gkh---V~~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~ 124 (387) T 3moi_A 83 QASEQGLH---IIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSR 124 (387) T ss_dssp HHHHTTCE---EEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCG T ss_pred HHHHHCCC---EECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECC T ss_conf 99861895---6537888799999999999999809948972223 No 23 >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Probab=98.18 E-value=1e-05 Score=55.41 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=80.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCC--CHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 97399988884377999999986269818997658998868727745775314--0785035788636886212045678 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT--TVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~--sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) +-||.|.| +|+-|+.|.+......+-++|+-+...+.- . ...|+|+ +..++.+ ++|+.+++.|+....+ T Consensus 3 ~irv~ivG-~G~iG~~~~~~l~~~~~~elv~v~~r~~~~---~---~~~~v~~~~d~~~~~~--~~Dvvii~tp~~~~~~ 73 (320) T 1f06_A 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATL---D---TKTPVFDVADVDKHAD--DVDVLFLCMGSATDIP 73 (320) T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCC---S---SSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHH T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCHHH---C---CCCCCCCHHHHHHHCC--CCCEEEECCCCCCCHH T ss_conf 55799988-089999999999709997999999688676---7---6888645177997405--7999998789716899 Q ss_pred HHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHCCCC-EEEECCC Q ss_conf 899998539958998058-8468889999998401771-8940685 Q gi|254781050|r 86 AIIESIEAEIPLIVCITE-GIPVLDMVRVKARLEKSSS-RLIGPNC 129 (300) Q Consensus 86 ai~Ea~~agik~iviite-Gip~~d~~~l~~~A~~~g~-riiGPNc 129 (300) .+.+|+++|+..+..... +.+.....++.+.|++.|. .++|.|. T Consensus 74 ~~~~~l~~G~~VV~~~~~~~~~~e~~~~l~~aA~~~g~~~v~~~g~ 119 (320) T 1f06_A 74 EQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGW 119 (320) T ss_dssp HHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSB T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9999998699999828875658789999999999739769994675 No 24 >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Probab=98.17 E-value=4.9e-06 Score=57.43 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=85.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC-CCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577-53140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV-PVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i-Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) |+-+-| +|..|..|.+....-.+.++|+-+.|...--....+..++ ++|++..|..+..++|+.+|++|+..-.+.+. T Consensus 4 rvgiIG-~G~~g~~h~~~~~~~~~~~ivav~d~~~~~~~~~a~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~ 82 (344) T 3ezy_A 4 RIGVIG-LGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI 82 (344) T ss_dssp EEEEEC-CSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH T ss_pred EEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCHHHHHHHH T ss_conf 499999-7199999999997289968999989899999999998399840299999964999899997163114399999 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECC Q ss_conf 998539958998058846888999999840177189-4068 Q gi|254781050|r 89 ESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPN 128 (300) Q Consensus 89 Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPN 128 (300) .|+++|....+==.=.....+.++|++.|+++++.+ +|-| T Consensus 83 ~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~ 123 (344) T 3ezy_A 83 ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFN 123 (344) T ss_dssp HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECG T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 99976996899457211103677777776436976999834 No 25 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=98.17 E-value=4.2e-06 Score=57.88 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=90.2 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 79739998888437799999998626981899765899886872774577531407850357886368862120456788 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) +--|+.+.|. |..|+.|.+....-.+.+|++-..+..---....+..++|.|.+..|..+..++|+.+|+.|+..-++. T Consensus 4 ~~lrvgiIG~-G~~~~~h~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~ 82 (354) T 3db2_A 4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEV 82 (354) T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHH T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEECCCHHHHHHH T ss_conf 9844999938-399999999998589948999988999999999998199833899999569999889987977888888 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE-EEECCC Q ss_conf 9999853995899805884688899999984017718-940685 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSR-LIGPNC 129 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~r-iiGPNc 129 (300) +..|+++|...++==.-.....+..+|++.+++++.. .+|.|. T Consensus 83 ~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~ 126 (354) T 3db2_A 83 IEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSS 126 (354) T ss_dssp HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGG T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 99999789979996686432378888888998607764222100 No 26 >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Probab=98.17 E-value=1.7e-05 Score=54.02 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=87.2 Q ss_pred EEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCCEEECCC-CCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 3999888843779-999999862698189976589988687277-45775314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGSTYWTGG-NVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~-~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) ||-+.|. |..|+ +|.+......+..+|+.|.+....-....+ .-.+++|++..|+.+..++|+.+|++|+..-.+.+ T Consensus 4 ~igiIG~-G~~~~~~hl~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~ell~~~~~D~V~I~tp~~~H~~~~ 82 (345) T 3f4l_A 4 NCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 82 (345) T ss_dssp EEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH T ss_pred EEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHHHHH T ss_conf 4999956-699999999999759997699999898899999998759993679999995699998899958869989999 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCC Q ss_conf 9998539958998058846888999999840177189-40685 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNC 129 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc 129 (300) ..|+++|....+==.=..-..+..+|.+.++++|+.+ +|-|. T Consensus 83 ~~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~ 125 (345) T 3f4l_A 83 KRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNR 125 (345) T ss_dssp HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGG T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 9999859909843431012566654330112367432012124 No 27 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=98.17 E-value=8.5e-06 Score=55.93 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=87.7 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 7973999888843779999999862-6981899765899886872774577--531407850357886368862120456 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILY-CQTQVVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y-~gt~ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) ..-||-|.| +|..|+.|.+..... .+..|||-+.+...--+...+..++ ++|++..|+.+..++|+.+|+.|+..= T Consensus 22 m~lrigIIG-~G~ig~~h~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~y~~~~ell~~~~iDaV~I~Tp~~~H 100 (357) T 3ec7_A 22 MTLKAGIVG-IGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357) T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH T ss_pred CCEEEEEEC-CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEECCCCCCC T ss_conf 931499999-8499999999998469997899997899999999999839998311999999659998889988985000 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE--EECCC Q ss_conf 78899998539958998058846888999999840177189--40685 Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL--IGPNC 129 (300) Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri--iGPNc 129 (300) .+.+.+|+++|...++=-.-.....+.++|.+.+++++.++ +|.|. T Consensus 101 ~~~~~~al~~GkhVl~EKPla~~~~e~~~l~~~~~~~~~~~~~v~~~~ 148 (357) T 3ec7_A 101 ADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMR 148 (357) T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGG T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 045788985177699758813558999998765302566432333221 No 28 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=98.15 E-value=3e-05 Score=52.46 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=117.8 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCEEECCCCCCC-CCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 7973999888843779999999862-6981899765899886872774577-5314078503578863688621204567 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILY-CQTQVVGGIHPKKGSTYWTGGNVNV-PVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y-~gt~ivagV~Pgkgg~~~~g~~~~i-Pvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) |.-||.+.| +|..|..|.+..+.. .+-++++-+.|...--....+..++ ++|++..|..+..++|+.+|++|+..-. T Consensus 7 kpirvgiIG-~G~~g~~~~~~~~~~~~~~~l~~i~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~v~I~tp~~~h~ 85 (346) T 3cea_A 7 KPLRAAIIG-LGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP 85 (346) T ss_dssp CCEEEEEEC-CSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECHHHHHH T ss_conf 976699998-8499999999998549996899998799999999999829985159999996489988899957176589 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE--EECCCCEEECCCCHHC-CEECCCCCCCCCEEEEEEC-- Q ss_conf 8899998539958998058846888999999840177189--4068510135551000-2001123577867999805-- Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL--IGPNCPGILTPDSCKI-GIMPGSIFRKGSVGILSRS-- 159 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri--iGPNc~Gii~p~~~~l-gi~p~~~~~pG~VgivSqS-- 159 (300) +.+.+|+++|+..++==.=.....+..+|.+.|++++..+ +|.+.- ..|.-.++ ..+-. -+-|.+-.+..+ T Consensus 86 ~~~~~al~~Gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r--~~p~~~~lk~li~~--g~iG~~~~~~~~~~ 161 (346) T 3cea_A 86 EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRR--YDDSYRYAKKIVDN--GDIGKIIYMRGYGI 161 (346) T ss_dssp HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGG--TCHHHHHHHHHHHT--TTTCSEEEEEEEEE T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCEEEC--CCHHHHHHHHHHHC--CCCCCCCCCCCCCC T ss_conf 999999864985988557422212211567888752876654132301--79999999999987--99886522233345 Q ss_pred --CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf --414789999999719951676405567446789999999997399872889997058 Q gi|254781050|r 160 --GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIG 216 (300) Q Consensus 160 --G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiG 216 (300) ....... ++......|......+ |....|++.++..++..+......... T Consensus 162 ~~~~~~~~~-~~~~~~~~g~g~~~d~------g~H~id~~~~~~~~~~~~~~~~~~~~~ 213 (346) T 3cea_A 162 DPISGMESF-TKFATEADSGGIFVDM------NIHDIDLIRWFTGQDPVQAYGLTSNIA 213 (346) T ss_dssp EEGGGHHHH-HHHHHHSCCCCHHHHT------THHHHHHHHHHHSCCEEEEEEEEECSS T ss_pred CCCCCCCCC-CCCCCCCCCCCEEEEC------CCCHHHHHHHHHCCCCEEEEEEEECCC T ss_conf 741012332-1347535788777207------400899999973899648999751125 No 29 >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Probab=98.13 E-value=1e-05 Score=55.38 Aligned_cols=125 Identities=14% Similarity=0.015 Sum_probs=89.0 Q ss_pred CEEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCC-EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 73999888843779-999999862698189976589988-6872774577531407850357886368862120456788 Q gi|254781050|r 9 TKVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGS-TYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 9 t~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg-~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) .||-+-|. |..|. +|......-.+..+||-..|.... .....+...+|+|+++.|..+..++|+.+|+.|+..-.+. T Consensus 3 irvgiIG~-G~~~~~~h~~~~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~i~tp~~~H~~~ 81 (349) T 3i23_A 3 VKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDL 81 (349) T ss_dssp EEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHH T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHHHH T ss_conf 05999988-09999999999961989789999909999999997553899357999999659998889988871456788 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC Q ss_conf 9999853995899805884688899999984017718940685101355 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300) +++|+++|...++=-.-.....+..+|.+.++++|+++ ..+..=-.+| T Consensus 82 ~~~al~agkhV~~EKP~a~~~~e~~~l~~~~~~~g~~~-~v~~~~r~~p 129 (349) T 3i23_A 82 AKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV-MPYQNRRFDG 129 (349) T ss_dssp HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE-EECCGGGGCH T ss_pred HHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHCCCCC-CCCCCEECHH T ss_conf 99999849918751774200221022023454269754-3320110037 No 30 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=98.12 E-value=1.2e-05 Score=54.96 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=89.6 Q ss_pred CEEEEE-CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCE-EECCCCCCCCCCCCHHHHCCCCCCCEEEEEC Q ss_conf 956771-79739998888437799999998626981899765899886-8727745775314078503578863688621 Q gi|254781050|r 1 MSILVD-KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGST-YWTGGNVNVPVFTTVAEAKERTAANASVIYV 78 (300) Q Consensus 1 msil~~-~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~-~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V 78 (300) |+|.-| .--||.+-|. |..|..|.+.+....+..+|+-+.+.+.-- .+ .-+.++|++..|..+..++|+.+|++ T Consensus 2 ~~~~~~~~~irv~iiG~-G~~g~~h~~~~~~~~~~eiv~v~d~~~~~~~~~---~~~~~~~~~~~ell~~~~~D~V~I~t 77 (315) T 3c1a_A 2 MSIPANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNPDNLALV---PPGCVIESDWRSVVSAPEVEAVIIAT 77 (315) T ss_dssp -------CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTC---CTTCEEESSTHHHHTCTTCCEEEEES T ss_pred CCCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH---CCCCCCCCCHHHHHCCCCCCEEEECC T ss_conf 89999999938999999-399999999997189948999987999999975---35797359999995599999899928 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 2045678899998539958998058846888999999840177189 Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) |+.+-.+.+.+|+++|...++=-.=.....+..+|++.++++|+.+ T Consensus 78 p~~~H~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 123 (315) T 3c1a_A 78 PPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMV 123 (315) T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCE T ss_pred CHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 7888799999999613221138982111467888888876414333 No 31 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=98.12 E-value=1.8e-05 Score=53.90 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=86.2 Q ss_pred ECCCEEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 17973999888843779-99999986269818997658998868727745775314078503578863688621204567 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 6 ~~~t~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) || =||-|.| +|..|. +|.+....-.+..+||-+.+.+. ....+...+|+|++..|..+..++|+.+|+.|+..-. T Consensus 6 ~~-irigiIG-~G~~~~~~h~~~~~~~~~~~lvav~d~~~~--~~~~~~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~H~ 81 (352) T 3kux_A 6 DK-IKVGLLG-YGYASKTFHAPLIMGTPGLELAGVSSSDAS--KVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHF 81 (352) T ss_dssp CC-EEEEEEC-CSHHHHHTHHHHHHTSTTEEEEEEECSCHH--HHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHH T ss_pred CC-CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCCHH--HHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHH T ss_conf 07-6399995-879999999999844998399999898999--9997469997689899995699999899888688889 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88999985399589980588468889999998401771894 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +.+.+|+++|...++==.-.....+..+|++.+++++..+. T Consensus 82 ~~~~~al~~gkhv~~EKP~a~~~~ea~~l~~~~~~~~~~~~ 122 (352) T 3kux_A 82 PLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352) T ss_dssp HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCE T ss_conf 88999998599772268742222321245667876386300 No 32 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=98.10 E-value=1e-05 Score=55.41 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=84.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC----CCCCCHHHHCCCCCCCEEEEECCHHH Q ss_conf 79739998888437799999998626981899765899886872774577----53140785035788636886212045 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV----PVFTTVAEAKERTAANASVIYVPPSG 82 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i----Pvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300) +.=||.|-| +|..|..|.+....-.+..+||-..|.+.-..-..+..++ .+|++..|..+..++|+.+|++|+.. T Consensus 5 ~~irvgiiG-~G~~~~~~~~~l~~~~~~elvav~d~~~~~~~~~a~~~~~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~ 83 (362) T 1ydw_A 5 TQIRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL 83 (362) T ss_dssp -CEEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHHHCCCCCCEEEEECCCHH T ss_conf 961899996-8299999999998589988999987999999999998499855565389999964999888999588268 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 6788999985399589980588468889999998401771894 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) =.+.+++|+++|...++=-.=.....+..+|.+.|++++..+. T Consensus 84 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~~~ 126 (362) T 1ydw_A 84 HVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM 126 (362) T ss_dssp HHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 8999999997698599947810004678999999863022441 No 33 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Probab=98.09 E-value=1.6e-05 Score=54.21 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=91.3 Q ss_pred CEEEEECCCEEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCC-EEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC Q ss_conf 9567717973999888843779-999999862698189976589988-68727745775314078503578863688621 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGS-TYWTGGNVNVPVFTTVAEAKERTAANASVIYV 78 (300) Q Consensus 1 msil~~~~t~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg-~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V 78 (300) ||+ -||.=||.|.|. |..|. +|.+....-.+.++|+-+.+...- +.... ..++|++..|..+.+++|+.+|+. T Consensus 1 ~~~-~~~~irvgiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~~~~~~~~ell~~~~iD~V~I~t 75 (364) T 3e82_A 1 MSL-SNNTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLP---DVTVIASPEAAVQHPDVDLVVIAS 75 (364) T ss_dssp -------CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCT---TSEEESCHHHHHTCTTCSEEEECS T ss_pred CCC-CCCCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCC---CCCEECCHHHHHCCCCCCEEEECC T ss_conf 987-899885999948-199999999999719895899998898999996477---997579999995599999899828 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCCCEEECC Q ss_conf 2045678899998539958998058846888999999840177189-40685101355 Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNCPGILTP 135 (300) Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc~Gii~p 135 (300) |+..-.+.+.+|+++|...++=-.-.....+.++|++.++++|..+ +|.|. -..| T Consensus 76 p~~~H~~~~~~al~~gkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~--r~~p 131 (364) T 3e82_A 76 PNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNR--RWDS 131 (364) T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCC--TTCH T ss_pred CHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEECC--CCCH T ss_conf 7788678888998649954102874110347789999975146189986124--4686 No 34 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=98.04 E-value=6.8e-05 Score=50.15 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=82.8 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 7973999888843779999999862698189976589988-687277457753140785035788636886212045678 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS-TYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg-~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) |.-|+-+.|+.......+...+... |.++|+-..|...- +.+.-.....++|++..|..+..++|+.+|+.|+..=.+ T Consensus 3 kkirigiiG~g~~~~~~~~~~~~~~-~~elvav~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~iDaV~I~tp~~~H~~ 81 (336) T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDA-GAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE 81 (336) T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHT-TCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEEECCHHHHHH T ss_conf 6056999936889999999886508-978999989999999999987799837899999955999899999688277899 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 8999985399589980588468889999998401771894 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+..|+++|...++=-.=.....+..+|++.++++|..+. T Consensus 82 ~~~~al~~gk~Vl~EKPla~s~~e~~~l~~~a~~~~~~~~ 121 (336) T 2p2s_A 82 LALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336) T ss_dssp HHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 9999998599089627853223200468999763032333 No 35 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=98.03 E-value=2e-05 Score=53.56 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=86.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 7399988884377999999986269818997658998868727745775-314078503578863688621204567889 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) =|+-|.| +|..+..|.+...+..+-++|+-..+.+.--....+..++| +|++..|..+..++|+.+|+.|+..-.+.+ T Consensus 6 ir~giIG-~G~i~~~h~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~iD~V~I~tp~~~H~~~~ 84 (330) T 3e9m_A 6 IRYGIMS-TAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAA 84 (330) T ss_dssp EEEEECS-CCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHH T ss_pred CEEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEECCCHHHHHCCCCCCEEEECCCHHHHHHHH T ss_conf 5899998-839999999999748992899998899999999999839980419999995489999899899707689999 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 99985399589980588468889999998401771894 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) ..|+++|...++==.=.....+..+|++.+++++..+. T Consensus 85 ~~al~~gk~v~~EKPl~~~~~e~~~l~~~~~~~~~~~~ 122 (330) T 3e9m_A 85 KLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM 122 (330) T ss_dssp HHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 99998599576403211225677889999986354112 No 36 >1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Probab=97.99 E-value=4.2e-05 Score=51.49 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=82.7 Q ss_pred CCCEEEEECCCCHHHH-HHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 7973999888843779-999999862698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 7 KNTKVLVQGLTGKAGT-FHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 7 ~~t~vivqGitg~~g~-~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) |.=|+.+.|. |..|. +|.+......+-+|++-..+.+.--....+..++|+|++..|..+ ++|+.+|..|+..=.+ T Consensus 4 kkikigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~tp~~~H~~ 80 (319) T 1tlt_A 4 KKLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFD 80 (319) T ss_dssp -CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHH T ss_pred CCCEEEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHC--CCCEEEEECCCHHHHH T ss_conf 7888999938-899999999999739996899998899999999999829982288999856--9999999488666689 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 899998539958998058846888999999840177189 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) .+++|+++|...++==.=.....+..+|.+.+++++..+ T Consensus 81 ~~~~al~~gkhv~~EKP~~~~~~e~~~l~~~~~~~~~~~ 119 (319) T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 119 (319) T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 999998619879996365024667777777765036316 No 37 >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Probab=97.97 E-value=5.1e-05 Score=50.97 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=89.1 Q ss_pred CCCEEEEECCCCHHHHH-HHHHHHHHCCCCEEEEECCCCC-CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 79739998888437799-9999986269818997658998-868727745775314078503578863688621204567 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTF-HTEQAILYCQTQVVGGIHPKKG-STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 7 ~~t~vivqGitg~~g~~-~~~~~~~y~gt~ivagV~Pgkg-g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +.-||-+-|. |..|.. |.+....-.+.+|||-+.|.+- .+... .+..+|+++.|..+..++|+.+|++|+..=. T Consensus 4 ~~lrvgiiG~-G~~g~~~h~~~~~~~~~~~ivav~d~~~~~a~~~~---~~~~~~~~~~ell~~~~iDaV~I~tp~~~H~ 79 (362) T 3fhl_A 4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKELSKERY---PQASIVRSFKELTEDPEIDLIVVNTPDNTHY 79 (362) T ss_dssp CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTC---TTSEEESCSHHHHTCTTCCEEEECSCGGGHH T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHC---CCCCCCCCHHHHHCCCCCCEEEECCCCHHHH T ss_conf 6759999936-89999999999983989299999849999999767---8998439999996499998899948947889 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC Q ss_conf 889999853995899805884688899999984017718940685101355 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300) +.+.+|+++|....+=-.=.....+.++|++.+++++.. +..+..--..| T Consensus 80 ~~~~~al~aGkhV~~EKPla~~~~ea~~l~~~a~~~~~~-~~v~~~~r~~p 129 (362) T 3fhl_A 80 EYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLM-LSVYQNRRWDA 129 (362) T ss_dssp HHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCC-EEEECGGGGSH T ss_pred HHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHCCCC-EEEEEEEECCH T ss_conf 999999974997510287531222111577887632522-11101210202 No 38 >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Probab=97.97 E-value=1.6e-05 Score=54.10 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=86.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCC-EEECCC-CCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 73999888843779999999862-698189976589988-687277-457753140785035788636886212045678 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILY-CQTQVVGGIHPKKGS-TYWTGG-NVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y-~gt~ivagV~Pgkgg-~~~~g~-~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) -||.|-| +|..|..|....... .+.++++-+.|...- +.+..+ ..+.++|++..|..++.++|+.+|++|+..-.+ T Consensus 3 irv~iiG-~G~~g~~h~~~~~~~~~~~~l~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~ 81 (344) T 3mz0_A 3 LRIGVIG-TGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344) T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH T ss_pred EEEEEEC-CHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCCCCHHH T ss_conf 0499999-829999999999842899689999899999999999985899806799999955999888996265211599 Q ss_pred HHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHHHCCCCEEEECCCCEEECC Q ss_conf 8999985399589980588---4688899999984017718940685101355 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEG---IPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 86 ai~Ea~~agik~iviiteG---ip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300) .+..|+++|... +.|- ....+..+|++.|++.+.+++--+..=-.+| T Consensus 82 ~~~~al~~gkhv---~~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p 131 (344) T 3mz0_A 82 SVLKAIKAQKYV---FCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDS 131 (344) T ss_dssp HHHHHHHTTCEE---EECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSH T ss_pred HHHHHHHCCCCE---EECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECH T ss_conf 999998549972---64687421200478999998752043057542122013 No 39 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=97.96 E-value=3.5e-05 Score=51.98 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=87.5 Q ss_pred CCEEEEECCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCE-EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 9739998888437-799999998626981899765899886-87277457753140785035788636886212045678 Q gi|254781050|r 8 NTKVLVQGLTGKA-GTFHTEQAILYCQTQVVGGIHPKKGST-YWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 8 ~t~vivqGitg~~-g~~~~~~~~~y~gt~ivagV~Pgkgg~-~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) --|+.+-|. |.. +..|.+....-.+.++||-+.|.+.-- .+.-..-..|+|++..|+.+..++|+.+|+.|+..=.+ T Consensus 5 ~irigiiG~-G~~~~~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~iD~V~I~tp~~~H~~ 83 (359) T 3m2t_A 5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE 83 (359) T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH T ss_pred CCEEEEECC-HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHHH T ss_conf 628999917-1999999999998399958999988999999999988499853189999965999998998786354358 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCC Q ss_conf 899998539958998058846888999999840177189-40685 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNC 129 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc 129 (300) .+..|+++|....+==.-.....|..+|++.|+++++.+ +|.|. T Consensus 84 ~~~~al~~Gk~V~~EKP~a~~~~ea~~l~~~a~~~~~~~~v~~~~ 128 (359) T 3m2t_A 84 MGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNF 128 (359) T ss_dssp HHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHH T ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCE T ss_conf 999998439809998533031799999886654113343342000 No 40 >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* Probab=97.95 E-value=6.7e-05 Score=50.20 Aligned_cols=91 Identities=22% Similarity=0.267 Sum_probs=72.4 Q ss_pred EECCCEEEEECCCCHHHHHHHHH--HHHHCCCCEEEEE--CCCCCCEEECCCCCCCCCCC--CHHHHCCCCCCCEEEEEC Q ss_conf 71797399988884377999999--9862698189976--58998868727745775314--078503578863688621 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQ--AILYCQTQVVGGI--HPKKGSTYWTGGNVNVPVFT--TVAEAKERTAANASVIYV 78 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~--~~~y~gt~ivagV--~Pgkgg~~~~g~~~~iPvy~--sv~ea~~~~~~D~avI~V 78 (300) +|+..+|++.|. |+.|+.-+.+ ...+ |-+|||.. .|.|-|+.+.| +|||+ .+.+.+++ .+.++|+| T Consensus 82 ~~~~~~viIvGa-GnLG~AL~~y~~f~~~-gf~Iva~FD~Dp~kiG~~I~g----i~V~~~~~L~~~i~~--~~i~IiaV 153 (215) T 2vt3_A 82 QDEMTDVILIGV-GNLGTAFLHYNFTKNN-NTKISMAFDINESKIGTEVGG----VPVYNLDDLEQHVKD--ESVAILTV 153 (215) T ss_dssp HC---CEEEECC-SHHHHHHHHCC-------CCEEEEEESCTTTTTCEETT----EEEEEGGGHHHHCSS--CCEEEECS T ss_pred CCCCCEEEEECC-CHHHHHHHHCCCCCCC-CCEEEEEECCCHHHCCCEECC----EEECCHHHHHHHHHH--CCEEEEEC T ss_conf 999843899897-7899999817254458-968999974885663987788----771568999999866--88999977 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 2045678899998539958998058 Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITE 103 (300) Q Consensus 79 P~~~v~dai~Ea~~agik~iviite 103 (300) |+..+.+++...+++|||.+.=+|. T Consensus 154 P~~~AQ~vad~Lv~~GIk~IlNFap 178 (215) T 2vt3_A 154 PAVAAQSITDRLVALGIKGILNFTP 178 (215) T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSS T ss_pred CHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 6788999999999809808977687 No 41 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Probab=97.88 E-value=0.00042 Score=45.14 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=89.2 Q ss_pred EEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC----EEE---CC-CC--CCCCCCCCHHHHCCCCCCC Q ss_conf 67717973999888843779999999862698189976589988----687---27-74--5775314078503578863 Q gi|254781050|r 3 ILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS----TYW---TG-GN--VNVPVFTTVAEAKERTAAN 72 (300) Q Consensus 3 il~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg----~~~---~g-~~--~~iPvy~sv~ea~~~~~~D 72 (300) .+-+|.-||-+.|. |..|..|.+......+.+|||-..|.... +.. .+ +. .-.+.|++..|..+..++| T Consensus 15 ~~~~kkiri~iiG~-G~~g~~h~~~~~~~~~~~~vav~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD 93 (444) T 2ixa_A 15 DFNPKKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNID 93 (444) T ss_dssp ----CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCC T ss_pred CCCCCCCEEEEECC-HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCC T ss_conf 68999758999948-19999999999708994899997698889999999999828963000265436699996389998 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECCC Q ss_conf 68862120456788999985399589980588468889999998401771894-0685 Q gi|254781050|r 73 ASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPNC 129 (300) Q Consensus 73 ~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii-GPNc 129 (300) +.+|+.|...=.+.+++|+++|...++=-.=.....+..+|++.++++|..+. |-|. T Consensus 94 ~V~I~tp~~~H~~~~~~al~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~ 151 (444) T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENV 151 (444) T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGG T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCC T ss_conf 8998588276899999999719877741889899999999999999839996011044 No 42 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Probab=97.85 E-value=5.4e-05 Score=50.78 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=85.2 Q ss_pred CCCEEEEECCCCHHHH-HHHHHHHHHCC-CCEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 7973999888843779-99999986269-818997658998868727745775-31407850357886368862120456 Q gi|254781050|r 7 KNTKVLVQGLTGKAGT-FHTEQAILYCQ-TQVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 7 ~~t~vivqGitg~~g~-~~~~~~~~y~g-t~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) |.-||-+.|. |..|. +|.+...+... ..+++-..|.+.-.....+..++| +|++..|..+..++|+.+|++|+..- T Consensus 17 k~lrigiIG~-G~~g~~~h~~~l~~~~~~~~l~ai~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 95 (340) T 1zh8_A 17 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 95 (340) T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH T ss_pred CCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCCHHH T ss_conf 6888999958-899999999999728997699999899999999999983998353889999559999989913870345 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 788999985399589980588468889999998401771894 Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+.+..|+++|....+=-.=+....+..+|.+.+++.|..+. T Consensus 96 ~~~~~~al~agk~Vl~EKP~~~~~~e~~~l~~~a~~~~~~~~ 137 (340) T 1zh8_A 96 LPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVY 137 (340) T ss_dssp HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 789999986699657636741321113466667765133432 No 43 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Probab=97.83 E-value=5.5e-05 Score=50.77 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=108.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 399988884377999999986269--818997658998868727745775-31407850357886368862120456788 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQ--TQVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~g--t~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) |+-|.|. |..|+.|.+....+.. -.+|+-..+...-..-..+..++| +|++..|..+..++|+.+|+.|+..-.+. T Consensus 4 k~giIG~-G~~g~~~~~~l~~~~~~~~~l~~v~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~ 82 (334) T 2o4u_X 4 RWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA 82 (334) T ss_dssp EEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHTCTTCSEEEECCCGGGHHHH T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEEECCCCCCHHH T ss_conf 7999999-399999999998585888599999879999999999983998254899999569999889990565411477 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCCCEEECCCCHHC--CEECCCCCCCCCEEEEEECCCHH Q ss_conf 99998539958998058846888999999840177189-4068510135551000--20011235778679998054147 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNCPGILTPDSCKI--GIMPGSIFRKGSVGILSRSGTLT 163 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc~Gii~p~~~~l--gi~p~~~~~pG~VgivSqSG~l~ 163 (300) +.+|+++|....+=-.-.....+..+|.+.+++++..+ +|-|.- ..|...++ -+..+ ..|.+-.+.-+..-. T Consensus 83 ~~~al~~gkhVl~EKP~~~~~~e~~~l~~~a~~~~~~~~v~~~~r--~~p~~~~~~~~i~~g---~~G~i~~~~~~~~~~ 157 (334) T 2o4u_X 83 VMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTR--FFPASEALRSVLAQG---TLGDLRVARAEFGKN 157 (334) T ss_dssp HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGG--GSHHHHHHHHHHHHT---TTCSEEEEEEEEECC T ss_pred HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC--CCCHHHHHHHHHHCC---CCCCEEEEEEEEEEC T ss_conf 899998699188469862122210234444542354215764102--670688888776438---747369999998302 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCC--CCCCCHHHHHHHHHCCCCCCEEEEEE Q ss_conf 899999997199516764055674--46789999999997399872889997 Q gi|254781050|r 164 YEAVFQTSQEGLGQSTAVGIGGDP--VKGTEFIDVLELFLADEATESIVMVG 213 (300) Q Consensus 164 ~e~~~~~~~~g~G~S~~VsiG~D~--~~G~~~~d~L~~~~~Dp~T~~Ivl~g 213 (300) ..-..+..... .||.+ ..|..+.|++.++..++..+.+...+ T Consensus 158 ~~~~~~~~~~~--------~~gG~l~d~g~H~idl~~~l~G~~~~~~v~~~~ 201 (334) T 2o4u_X 158 LTHVPRAVDWA--------QAGGALLDLGIYCVQFISMVFGGQKPEKISVMG 201 (334) T ss_dssp CTTSHHHHCTT--------TTCSHHHHTHHHHHHHHHHHTTTCCCSEEEEEE T ss_pred CCCCCCCCCCC--------CCCCEEEECHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 22334456656--------688734420354899999984999738999994 No 44 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=97.83 E-value=7.6e-05 Score=49.86 Aligned_cols=124 Identities=11% Similarity=-0.009 Sum_probs=85.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCC-CCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577-53140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNV-PVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~i-Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) |-=|.| +|..|..|....+.-.+..+++-+.+...--.-..+..++ .+|++..|..+..++|+.+|.+|+.+-.+.+. T Consensus 2 ~~GIIG-~G~~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~v~i~tp~~~H~~~~~ 80 (332) T 2glx_A 2 RWGLIG-ASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332) T ss_dssp EEEEES-CCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH T ss_pred CEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCHHHHHCCCCCCEEEECCCCHHHHHHHH T ss_conf 099999-6699999999997389978999984999999999998099940189999956999999999688446578899 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC Q ss_conf 99853995899805884688899999984017718940685101355 Q gi|254781050|r 89 ESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 89 Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p 135 (300) .|+++|...++=-.-..-..+..+|.+.+++++..+. -+..--..| T Consensus 81 ~al~~gk~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~-v~~~~r~~p 126 (332) T 2glx_A 81 AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLG-TNHHLRNAA 126 (332) T ss_dssp HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE-ECCCGGGSH T ss_pred HHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHH T ss_conf 9998699875367730357899998876654023333-331121038 No 45 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=97.77 E-value=0.00051 Score=44.55 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=81.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) ||-+-|. |+-|+.|.+..... +-++++-+.+... ....|.++.|..+. ++|+.+++.|+..+.+-+.. T Consensus 2 kVgIIG~-G~iG~~v~~~l~~~-~~el~~v~d~~~~---------~~~~~~~~de~l~~-~~DvVie~a~~~a~~e~a~~ 69 (236) T 2dc1_A 2 LVGLIGY-GAIGKFLAEWLERN-GFEIAAILDVRGE---------HEKMVRGIDEFLQR-EMDVAVEAASQQAVKDYAEK 69 (236) T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCC---------CTTEESSHHHHTTS-CCSEEEECSCHHHHHHHHHH T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECCCC---------CCCCCCCHHHHHCC-CCCEEEEECCCCCCHHHHHH T ss_conf 7999958-88999999999719-9889999967850---------22444899999438-88789990697404799999 Q ss_pred HHHCCCCEEEEECCCCCHHH-HHHHHHHHHCCCCEEEECC Q ss_conf 98539958998058846888-9999998401771894068 Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLD-MVRVKARLEKSSSRLIGPN 128 (300) Q Consensus 90 a~~agik~iviiteGip~~d-~~~l~~~A~~~g~riiGPN 128 (300) |+++|+..++.-+..+..++ ..+|.+.|+++|.+++=|. T Consensus 70 ~L~~G~~vvv~S~galad~~~~~~L~~~A~~~g~~l~i~s 109 (236) T 2dc1_A 70 ILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIAS 109 (236) T ss_dssp HHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECC T ss_pred HHHCCCCEEEEECHHHCCCHHHHHHHHHHHHCCCCEEECC T ss_conf 9973997999622163173499999999986588378442 No 46 >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 Probab=97.77 E-value=0.00046 Score=44.88 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=81.0 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 17973999888843779999999862698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) ...=||.|-|.+||.|+.-.+...+. +-.+|+++.+.. . +..+ .+|+.|-|.+|..+.+ T Consensus 10 ~~~mKI~I~G~~GrMG~~I~~~~~~~-~~~lv~~id~~~-----------~-------~~l~--~~DVvIDFS~p~~~~~ 68 (228) T 1vm6_A 10 HHHMKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDVNG-----------V-------EELD--SPDVVIDFSSPEALPK 68 (228) T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEETTE-----------E-------EECS--CCSEEEECSCGGGHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEECCCC-----------H-------HHHC--CCCEEEECCCCHHHHH T ss_conf 67878999999997999999999769-995999978883-----------7-------6725--9999998988303355 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC-CEEE Q ss_conf 89999853995899805884688899999984017718940685-1013 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC-PGIL 133 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc-~Gii 133 (300) .+.-|.+.+++ +|+=|-|+...+..++.+++++..+ ++-||- +|+. T Consensus 69 ~l~~~~~~~~p-lViGTTG~~~~~~~~l~~~~~~~~i-~~a~NfSlGv~ 115 (228) T 1vm6_A 69 TVDLCKKYRAG-LVLGTTALKEEHLQMLRELSKEVPV-VQAYNFSIGIN 115 (228) T ss_dssp HHHHHHHHTCE-EEECCCSCCHHHHHHHHHHTTTSEE-EECSCCCHHHH T ss_pred HHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHCCCCE-EECCCHHHHHH T ss_conf 68999863876-4998068887899999998241887-60540748999 No 47 >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Probab=97.70 E-value=0.0013 Score=41.90 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=79.8 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) ||.|-|.|||.|+.-.+...+..+..+++++.++. |. ....+ .++|+.|=|..|..+.+.+.- T Consensus 2 ki~I~G~~GrmG~~i~~~i~~~~~~~l~~~~d~~~------------~~-~~~~~----~~~DvvIDFS~p~~~~~~~~~ 64 (245) T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD------------PL-SLLTD----GNTEVVIDFTHPDVVMGNLEF 64 (245) T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC------------CT-HHHHH----TTCCEEEECSCTTTHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCC------------CH-HHHCC----CCCCEEEECCCHHHHHHHHHH T ss_conf 89998999979999999996399978999954898------------50-33135----689889987883779999999 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHH-CCCC-EEEECCC-CEEE Q ss_conf 98539958998058846888999999840-1771-8940685-1013 Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLE-KSSS-RLIGPNC-PGIL 133 (300) Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~-~~g~-riiGPNc-~Gii 133 (300) |.+.+++ +|+=|-|+...+..++.+++. ..++ .++-||- +|+. T Consensus 65 ~~~~~~p-lViGTTG~~~~~~~~i~~~~~~~~~~pil~a~NfSlGv~ 110 (245) T 1p9l_A 65 LIDNGIH-AVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAV 110 (245) T ss_dssp HHHTTCE-EEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHH T ss_pred HHHCCCE-EEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHH T ss_conf 9972947-999889887778899988875326877899662089999 No 48 >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Probab=97.69 E-value=0.00052 Score=44.54 Aligned_cols=112 Identities=11% Similarity=-0.003 Sum_probs=79.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---------CEEECCCCCCCCC---CCCHHHHCCCCCCCEEEEE Q ss_conf 399988884377999999986269818997658998---------8687277457753---1407850357886368862 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG---------STYWTGGNVNVPV---FTTVAEAKERTAANASVIY 77 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg---------g~~~~g~~~~iPv---y~sv~ea~~~~~~D~avI~ 77 (300) |+.+.|.+|..|..|.+....- +-.+|+.+.|... ...+..+ .|. |.+..+.....++|+.+|+ T Consensus 5 ~~~iIG~~G~ig~~H~~a~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iD~V~I~ 80 (318) T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVGIIDSISPQSEFFTE---FEFFLDHASNLKRDSATALDYVSIC 80 (318) T ss_dssp EEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGGGTCTTCEEESS---HHHHHHHHHHHTTSTTTSCCEEEEC T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHCCCHHHHHHHH---CCCCHHHHHHHHHHCCCCCCEEEEC T ss_conf 9999969988999999999728-99489999486677666315066776322---0340004408877158996099985 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 120456788999985399589980588468889999998401771894 Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +|+..=.+.+.+|+++|....+==.=....++..+|.+.+++++.++. T Consensus 81 tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~~~~~~~~~~ 128 (318) T 3oa2_A 81 SPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318) T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 984999999999997599199945773430366789987651597069 No 49 >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Probab=97.68 E-value=0.00023 Score=46.72 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=82.9 Q ss_pred CCEEEEECCCCHHHHH-HHHHHHHH-CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 9739998888437799-99999862-698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 8 NTKVLVQGLTGKAGTF-HTEQAILY-CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 8 ~t~vivqGitg~~g~~-~~~~~~~y-~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) .=|+.+.|. |..|.. |... +.. .+..|++ |...+- +.+.-+.-..++|.+..|+.+..++|+.+|++|+..-.+ T Consensus 5 ~ikigiIG~-G~~~~~~~~~~-~~~~~~~~l~~-v~~~~~-~~~~~~~~~~~~~~s~~ell~~~~~DaV~i~tp~~~H~~ 80 (358) T 3gdo_A 5 TIKVGILGY-GLSGSVFHGPL-LDVLDEYQISK-IMTSRT-EEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYE 80 (358) T ss_dssp CEEEEEECC-SHHHHHTTHHH-HTTCTTEEEEE-EECSCH-HHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHH T ss_pred CCEEEEEEC-CHHHHHHHHHH-HHCCCCCEEEE-EECCCH-HHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHHHHH T ss_conf 867999909-69999999999-82389908999-948899-999986799835399999965999999998897688999 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECCCC Q ss_conf 899998539958998058846888999999840177189-406851 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPNCP 130 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPNc~ 130 (300) .+.+|+++|...++==.-.....+..+|++.+++++..+ +|-|.. T Consensus 81 ~~~~al~~gk~V~~EKPla~~~~ea~~l~~~a~~~~~~~~v~~~~r 126 (358) T 3gdo_A 81 HTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRR 126 (358) T ss_dssp HHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGG T ss_pred HHHHHHHCCCEEEEECEEHHHHHHHHHHHHHHHHCCEEEEEEECCC T ss_conf 9999986599898612000103678999998762451565410001 No 50 >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Probab=97.66 E-value=8.6e-05 Score=49.49 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=71.6 Q ss_pred EECCCEEEEECCCCHHHHHHHHHH--HHHCCCCEEEE--ECCCC-CCEEE-CCCCCCCCCCC--CHHHHCCCCCCCEEEE Q ss_conf 717973999888843779999999--86269818997--65899-88687-27745775314--0785035788636886 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQA--ILYCQTQVVGG--IHPKK-GSTYW-TGGNVNVPVFT--TVAEAKERTAANASVI 76 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~--~~y~gt~ivag--V~Pgk-gg~~~-~g~~~~iPvy~--sv~ea~~~~~~D~avI 76 (300) +|+..++++-|. |+-|+.-+.+. ..+ |-+|||. +.|.| .|.+. +| +|||+ .+++.+++.+++.++| T Consensus 81 ~~~~~~v~lVGa-GnLG~AL~~y~~f~~~-gf~Iva~FD~dp~ki~g~~~~~g----i~V~~~~~l~~~i~~~~i~i~Ii 154 (212) T 3keo_A 81 DHSTTNVMLVGC-GNIGRALLHYRFHDRN-KMQISMAFDLDSNDLVGKTTEDG----IPVYGISTINDHLIDSDIETAIL 154 (212) T ss_dssp TTSCEEEEEECC-SHHHHHHTTCCCCTTS-SEEEEEEEECTTSTTTTCBCTTC----CBEEEGGGHHHHC-CCSCCEEEE T ss_pred CCCCCEEEEECC-CHHHHHHHHCCCCCCC-CCEEEEEEECCCHHCCCCEEECC----EEECCHHHHHHHHHHCCCEEEEE T ss_conf 999842899888-8899998828461017-97899999578044068654288----78638999999997769849999 Q ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 212045678899998539958998058 Q gi|254781050|r 77 YVPPSGAGDAIIESIEAEIPLIVCITE 103 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~agik~iviite 103 (300) +||+..+-+++...+++||+.+.=+|. T Consensus 155 aVP~~~AQ~vad~Lv~~GIk~IlNFap 181 (212) T 3keo_A 155 TVPSTEAQEVADILVKAGIKGILSFSP 181 (212) T ss_dssp CSCGGGHHHHHHHHHHHTCCEEEECSS T ss_pred ECCHHHHHHHHHHHHHHCCEEEEECCC T ss_conf 327789999999999829979998688 No 51 >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, thermus themophilus; HET: NAD; 2.16A {Thermus thermophilus HB8} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* Probab=97.65 E-value=0.00021 Score=47.00 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=72.7 Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEECCCCCCCCCCCC--HHHHCCCCCCCEEEEECCH Q ss_conf 717973999888843779999999862698189976--589988687277457753140--7850357886368862120 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI--HPKKGSTYWTGGNVNVPVFTT--VAEAKERTAANASVIYVPP 80 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV--~Pgkgg~~~~g~~~~iPvy~s--v~ea~~~~~~D~avI~VP~ 80 (300) .|+..+|++.|. |+.|+.-+.+...-.+-++||.+ +|.|-|++..| +|||.. +++..++ .++.+++.+|+ T Consensus 77 ~~~~~~v~I~Ga-G~~G~~L~~~~~~~~~~~ivgf~DdDp~k~G~~I~G----i~V~~~~~l~~~i~~-~i~iaI~avp~ 150 (211) T 2dt5_A 77 LNRKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRG----GVIEHVDLLPQRVPG-RIEIALLTVPR 150 (211) T ss_dssp TTSCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETT----EEEEEGGGHHHHSTT-TCCEEEECSCH T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCEECC----EEECCHHHHHHHHHH-CCEEEEECCCH T ss_conf 998851899878-889999998463257956999996985880998788----788768999999983-66178524998 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 456788999985399589980588 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteG 104 (300) ..+.+.+.++.++|||.+.=++.. T Consensus 151 ~~~q~i~d~l~~~gIk~Ilnfa~~ 174 (211) T 2dt5_A 151 EAAQKAADLLVAAGIKGILNFAPV 174 (211) T ss_dssp HHHHHHHHHHHHHTCCEEEECSSS T ss_pred HHHHHHHHHHHHCCCCEEEECCCE T ss_conf 999999999998499487355873 No 52 >2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A Probab=97.58 E-value=0.00043 Score=45.02 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=84.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 399988884377999999986269818997658998-8687277457753140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG-STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg-g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) |+-+.|. |..|..|.+......+.++|+-..+.+. .+.+..+....++|++. |.....++|+.+|++|+..=.+.+. T Consensus 3 kigiIG~-G~~~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~-e~l~~~~iD~V~I~tp~~~H~~~~~ 80 (325) T 2ho3_A 3 KLGVIGT-GAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQL-EVFFKSSFDLVYIASPNSLHFAQAK 80 (325) T ss_dssp EEEEECC-SHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGSSSCEEESCH-HHHHTSSCSEEEECSCGGGHHHHHH T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHH-HHHHCCCCCEEEEECCCCHHHHHHH T ss_conf 9999998-3999999999986889089999889999999999984998356859-9971899989999589603159999 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECCC Q ss_conf 9985399589980588468889999998401771894-0685 Q gi|254781050|r 89 ESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPNC 129 (300) Q Consensus 89 Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii-GPNc 129 (300) +|+++|....+==.-.....+..++.+.|++++..+. |.+. T Consensus 81 ~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~ 122 (325) T 2ho3_A 81 AALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARN 122 (325) T ss_dssp HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECTT T ss_pred HHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 998634512227983111102467777887617654222000 No 53 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Probab=97.55 E-value=0.0011 Score=42.33 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=78.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 97399988884377999999986269818997658998868727745775314078503578863688621204567889 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) .=||.+-|. |+.|+...+. . ..+.++-+..-. ...|.+.+..|.....++|+-+.|.|+..+.+.+ T Consensus 12 ~mrV~iiG~-G~~G~~v~~~-~---~~~~v~v~~r~~---------~~~~~~~~~~~~~~~~~~DvVve~~~~~~~~~~~ 77 (253) T 1j5p_A 12 HMTVLIIGM-GNIGKKLVEL-G---NFEKIYAYDRIS---------KDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYS 77 (253) T ss_dssp CCEEEEECC-SHHHHHHHHH-S---CCSEEEEECSSC---------CCCSSSEECSSCCCCTTCCEEEECSCHHHHHHHH T ss_pred CCEEEEECC-CHHHHHHHHH-H---HHCCEEEEECCC---------CCCCCCCCHHHHHCCCCCCEEEECCCCHHHHHHH T ss_conf 788999987-8899999998-6---108479992577---------7666757878861657998999858807999999 Q ss_pred HHHHHCCCCEEEEECCCC-CHHH-HHHHHHHHHCCCCEEE-ECCCCE Q ss_conf 999853995899805884-6888-9999998401771894-068510 Q gi|254781050|r 88 IESIEAEIPLIVCITEGI-PVLD-MVRVKARLEKSSSRLI-GPNCPG 131 (300) Q Consensus 88 ~Ea~~agik~iviiteGi-p~~d-~~~l~~~A~~~g~rii-GPNc~G 131 (300) .+|+++|+. +|+.|-|. +..+ ..+|.+.|++++.+++ .||-.+ T Consensus 78 ~~al~~g~~-vv~~s~g~~~~~~~~~~l~~~a~~~~~~i~~~~~~~~ 123 (253) T 1j5p_A 78 LQILKNPVN-YIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIG 123 (253) T ss_dssp HHHTTSSSE-EEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCC T ss_pred HHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEE T ss_conf 999973997-9998364245731599999999972993995563152 No 54 >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Probab=97.54 E-value=0.00048 Score=44.74 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=84.6 Q ss_pred CEEEEECC---CCHHHHHHHHHHHHHCC-CCEEEEECCCCCCEEECCCCCCCC---CCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 73999888---84377999999986269-818997658998868727745775---314078503578863688621204 Q gi|254781050|r 9 TKVLVQGL---TGKAGTFHTEQAILYCQ-TQVVGGIHPKKGSTYWTGGNVNVP---VFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 9 t~vivqGi---tg~~g~~~~~~~~~y~g-t~ivagV~Pgkgg~~~~g~~~~iP---vy~sv~ea~~~~~~D~avI~VP~~ 81 (300) -||-+.|. +|-.+..|........+ -.|||-..+...-..-..+..++| +|++..|..+..++|+.+|.+|+. T Consensus 40 iRvGiIG~G~~~g~~~~~H~~al~~~~~~~elvAv~d~~~e~a~~~a~~~g~~~~~~y~d~~ell~~~~vD~V~I~tp~~ 119 (479) T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479) T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEECCCH T ss_conf 27999968987647999999999837988799999889999999999985889774469999995599998899949827 Q ss_pred HHHHHHHHHHHCCC-----CEEEEEC-CCCCHHHHHHHHHHHHCC-CC-EEEECCC Q ss_conf 56788999985399-----5899805-884688899999984017-71-8940685 Q gi|254781050|r 82 GAGDAIIESIEAEI-----PLIVCIT-EGIPVLDMVRVKARLEKS-SS-RLIGPNC 129 (300) Q Consensus 82 ~v~dai~Ea~~agi-----k~iviit-eGip~~d~~~l~~~A~~~-g~-riiGPNc 129 (300) .=.+.++.|+++|+ |-+.|=- =.....+..+|++.|+++ ++ ..+|-|- T Consensus 120 ~H~~~~~~Al~aG~~~~~~KhV~~EKPla~~~~ea~~l~~~a~~~~~v~~~v~~~~ 175 (479) T 2nvw_A 120 EHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQG 175 (479) T ss_dssp HHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGG T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 89999999998295435687389926753105667999999763254203300332 No 55 >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Probab=97.54 E-value=0.0024 Score=40.33 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=110.5 Q ss_pred HHHHHHHHCCCCEEEECCCCEEECCCC-----HHCCEEC------------------------------CCCCCCCCEEE Q ss_conf 999998401771894068510135551-----0002001------------------------------12357786799 Q gi|254781050|r 111 VRVKARLEKSSSRLIGPNCPGILTPDS-----CKIGIMP------------------------------GSIFRKGSVGI 155 (300) Q Consensus 111 ~~l~~~A~~~g~riiGPNc~Gii~p~~-----~~lgi~p------------------------------~~~~~pG~Vgi 155 (300) ..|.+.-.++...++==|=+.+..-++ +++.+-. ..+--.|+||+ T Consensus 189 ~~Ly~~F~e~Da~LlEINPLv~t~~g~~~aLDaK~~iDDnA~fR~~~~~~~~d~~~~~~~E~~a~~~~l~yv~ldG~Ig~ 268 (395) T 2fp4_B 189 KKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIAC 268 (395) T ss_dssp HHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHHTTCCCTTSCHHHHHHHHTTCEEEECSSSEEE T ss_pred HHHHHHHHHCCCCEEEECCEEECCCCCEEEEEEEECCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHCCCCEEECCCCEEE T ss_conf 99999998568230660114886999879722462246565653532121367755997789998759866514782789 Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH-HHHHH-HHHHHHHC Q ss_conf 98054147899999997199516764055674467899999999973998728899970587248-99999-99986422 Q gi|254781050|r 156 LSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE-EEAAQ-FLKDEAKR 233 (300) Q Consensus 156 vSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E-~~aa~-fi~~~~~~ 233 (300) +.-.++|+...++.+...|---.-+.-+||.+.. ....+.++.+..||+.|+|++-. .||... .+.|+ .+++.+.. T Consensus 269 ~vnGaGLaMaTmD~i~~~Gg~pANFlD~GG~a~~-e~v~~a~~iil~d~~vk~iliNI-fGGI~~cd~vA~GIi~A~~e~ 346 (395) T 2fp4_B 269 FVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKE-SQVYQAFKLLTADPKVEAILVNI-FGGIVNCAIIANGITKACREL 346 (395) T ss_dssp EESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCH-HHHHHHHHHHHHCTTCCEEEEEE-EESSSCHHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHC T ss_conf 8437642110257898715773315641788878-99999999996399987899998-087303599999999999961 Q ss_pred CCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHH Q ss_conf 67552689984301576553220011224888899999999998897--578898999999999984 Q gi|254781050|r 234 GRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLG 298 (300) Q Consensus 234 ~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~ 298 (300) ..+.|||+-..|.....|+ +.|+++|. ..+++++|-.....+++. T Consensus 347 ~~~vpivVRl~Gtn~~eg~--------------------~iL~~sgl~i~~~~~l~~A~~kaV~~~~ 393 (395) T 2fp4_B 347 ELKVPLVVRLEGTNVHEAQ--------------------NILTNSGLPITSAVDLEDAAKKAVASVT 393 (395) T ss_dssp TCCSCEEEEEEETTHHHHH--------------------HHHHHTCSCCEECSSHHHHHHHHHHTTC T ss_pred CCCCCEEEECCCCCHHHHH--------------------HHHHHCCCCEEEECCHHHHHHHHHHHHH T ss_conf 9998789999989989999--------------------9999779974874899999999999963 No 56 >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Probab=97.52 E-value=0.0017 Score=41.17 Aligned_cols=164 Identities=18% Similarity=0.284 Sum_probs=108.9 Q ss_pred HHHHHHHCCCCEEEECCCCEEECCCC-----HHCCEE-------C-----------------------CCCCCCCCEEEE Q ss_conf 99998401771894068510135551-----000200-------1-----------------------123577867999 Q gi|254781050|r 112 RVKARLEKSSSRLIGPNCPGILTPDS-----CKIGIM-------P-----------------------GSIFRKGSVGIL 156 (300) Q Consensus 112 ~l~~~A~~~g~riiGPNc~Gii~p~~-----~~lgi~-------p-----------------------~~~~~pG~Vgiv 156 (300) .|.+.-.+....++==|.+-+-.-++ +++.+- | ..+-..|+||++ T Consensus 183 ~Ly~~F~~~D~~llEINPLv~t~~g~l~aLDaK~~~DdnA~fR~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~m 262 (388) T 2nu8_B 183 GLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCM 262 (388) T ss_dssp HHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHHHHCCGGGSCHHHHHHHHTTCEEEECSSSEEEE T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEE T ss_conf 99999985676404555313558997899763532566500049244541476647976999876797632579738999 Q ss_pred EECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH-HHHHH-HHHHHHHCC Q ss_conf 8054147899999997199516764055674467899999999973998728899970587248-99999-999864226 Q gi|254781050|r 157 SRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE-EEAAQ-FLKDEAKRG 234 (300) Q Consensus 157 SqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E-~~aa~-fi~~~~~~~ 234 (300) .-.++|+...++.+...|---.-+.-+||.+-. ....++++.+..||+.++|++-- .||... .+.|+ .+++.+... T Consensus 263 vnGaGlamaTmD~i~~~Gg~pANfld~gG~a~~-e~v~~a~kiil~d~~vk~iliNI-fGGI~rcd~vA~GIi~A~~~~~ 340 (388) T 2nu8_B 263 VNGAGLAMGTMDIVKLHGGEPANFLDVGGGATK-ERVTEAFKIILSDDKVKAVLVNI-FGGIVRCDLIADGIIGAVAEVG 340 (388) T ss_dssp ESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCH-HHHHHHHHHHHTSTTCCEEEEEE-ESCSSCHHHHHHHHHHHHHHHT T ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCH-HHHHHHHHHHHCCCCCCEEEEEE-ECCHHHHHHHHHHHHHHHHHCC T ss_conf 658429999999999849984226873699978-99999999986599965899996-0764558999999999999709 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE--ECCCHHHHHHHHHHHH Q ss_conf 75526899843015765532200112248888999999999988975--7889899999999998 Q gi|254781050|r 235 RKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGIC--IAPSPARIGRSLVELL 297 (300) Q Consensus 235 ~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~--v~~s~~el~~~l~~~l 297 (300) .++|||+-..|.....|+ +.|+++|+. .+++++|-.+...++. T Consensus 341 ~~vpivVRl~Gtn~eeg~--------------------~il~~~gl~i~~~~~l~~Aa~~~V~~~ 385 (388) T 2nu8_B 341 VNVPVVVRLEGNNAELGA--------------------KKLADSGLNIIAAKGLTDAAQQVVAAV 385 (388) T ss_dssp CCSCEEEEEESTTHHHHH--------------------HHHHTTCSSEEECSSHHHHHHHHHHHT T ss_pred CCCCEEEECCCCCHHHHH--------------------HHHHHCCCCEEECCCHHHHHHHHHHHH T ss_conf 998789999989989999--------------------999978998687089999999999985 No 57 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Probab=97.51 E-value=0.00021 Score=47.10 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=81.2 Q ss_pred ECCCEEEEECCCCHHHHH-HHHHHHHHCCCCEEEEECCCCC-----CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 179739998888437799-9999986269818997658998-----8687277457753140785035788636886212 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTF-HTEQAILYCQTQVVGGIHPKKG-----STYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~-~~~~~~~y~gt~ivagV~Pgkg-----g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) |+.-||-+.|. |..|.. |...+..-.+.+|||-+.+... .+.+.-+...++.|++..|..+..++|+.+|++| T Consensus 81 ~~~i~v~iiG~-G~~g~~~~~~~~~~~~~~~lvav~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~V~i~tp 159 (433) T 1h6d_A 81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 159 (433) T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC T ss_pred CCCEEEEEEEC-HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEECC T ss_conf 98068999908-19999999999972999789999929999999999971998344667689999956999878999098 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 0456788999985399589980588468889999998401771894 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +..-.+.+.+|+++|...++=-.=.....+..+|.+.++++|.++. T Consensus 160 ~~~H~~~~~~al~aGkhv~~EKP~a~~~~e~~~l~~~a~~~~~~~~ 205 (433) T 1h6d_A 160 NSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM 205 (433) T ss_dssp GGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEE T ss_conf 7999999999998799199957841233323202466765240115 No 58 >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Probab=97.45 E-value=0.0012 Score=42.14 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=81.8 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCE--EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 1797399988884377999999986269818--99765899886872774577531407850357886368862120456 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQV--VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~i--vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) ++.-||.|-|. |..|+.|.+....-....+ ++++.|.+.-.... ..-|.+..|..+..++|+.+|..|+..= T Consensus 5 ~~kikvgIIG~-G~~g~~h~~~l~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~ell~~~~iDaV~I~tp~~~H 78 (294) T 1lc0_A 5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLD-----EVRQISLEDALRSQEIDVAYICSESSSH 78 (294) T ss_dssp CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEET-----TEEBCCHHHHHHCSSEEEEEECSCGGGH T ss_pred CCCCEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHC-----CCCCCCHHHHHCCCCCCEEEEECCCHHH T ss_conf 98858999928-69999999999608997589999488868876430-----6774899999549999899992895666 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 788999985399589980588468889999998401771894 Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+.+..|+++|...++==.=.....+..+|++.|+++|.++. T Consensus 79 ~~~~~~al~~gkhV~~EKPla~~~~e~~~l~~~a~~~~~~~~ 120 (294) T 1lc0_A 79 EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLH 120 (294) T ss_dssp HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 899999997599734206763899999999999998199599 No 59 >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Probab=97.44 E-value=0.00042 Score=45.13 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=78.7 Q ss_pred EEEEECCCCHHHHH-HHHHHHHHCCCCEEEEECCCCC-CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 39998888437799-9999986269818997658998-868727745775314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGTF-HTEQAILYCQTQVVGGIHPKKG-STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~~-~~~~~~~y~gt~ivagV~Pgkg-g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) |+-+.|. |..|+. |.+......+.+++ .+..... -+.+.-+....++|++..|..++ ++|+.+|.+|+..-.+.+ T Consensus 4 rigiiG~-G~~a~~~h~~~l~~~~~~~l~-~~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~-~iD~V~I~tp~~~H~~~~ 80 (323) T 1xea_A 4 KIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQY-GVDAVMIHAATDVHSTLA 80 (323) T ss_dssp EEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGGG-CCSEEEECSCGGGHHHHH T ss_pred EEEEEEC-CHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHHCCCCCEECCHHHHHCC-CCCEEEEECCCHHHHHHH T ss_conf 7999928-899999999999819896899-9989999999999983998410889999558-999999817826779999 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE-EECC Q ss_conf 9998539958998058846888999999840177189-4068 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL-IGPN 128 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri-iGPN 128 (300) .+|+++|...++==.=.....+.++|.+.++++++.+ +|-| T Consensus 81 ~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~ 122 (323) T 1xea_A 81 AFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN 122 (323) T ss_dssp HHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG T ss_pred HHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 999863896687457644255521210111134553323323 No 60 >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Probab=97.41 E-value=0.003 Score=39.69 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=79.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC---------EEECCCCCCCCCCCCHHHHC--CCCCCCEEEEE Q ss_conf 73999888843779999999862698189976589988---------68727745775314078503--57886368862 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS---------TYWTGGNVNVPVFTTVAEAK--ERTAANASVIY 77 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg---------~~~~g~~~~iPvy~sv~ea~--~~~~~D~avI~ 77 (300) .|+.+.|.+|.-|..|.+.+... +..+|+.+.|.... ....+ ....|++..+.. ...++|+.+|+ T Consensus 4 ~r~~iIG~~G~i~~~h~~al~~~-~~~~v~~~d~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~iD~V~I~ 79 (312) T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVGLVDSFFPEAEFFT---EPEAFEAYLEDLRDRGEGVDYLSIA 79 (312) T ss_dssp CEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGGGGGTCTTCEEES---CHHHHHHHHHHHHHTTCCCSEEEEC T ss_pred EEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHCHHHHHHHC---CCCCCCHHHHHHHHCCCCCEEEEEC T ss_conf 39999988989999999999708-9958999867035667551588898714---4235141889875027996599998 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 120456788999985399589980588468889999998401771894 Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .|+..=.+.+.+|+++|....+==.=.....+..+|.+.+++++..+. T Consensus 80 tp~~~H~~~~~~al~~gk~Vl~EKP~a~~~~e~~~l~~~~~~~~~~~~ 127 (312) T 3o9z_A 80 SPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312) T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 995789999999997199489804875877787789999886398236 No 61 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Probab=97.18 E-value=0.00037 Score=45.43 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=78.2 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEE--CCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 3999888843779999999862698189976--589988687--2774577--531407850357886368862120456 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGI--HPKKGSTYW--TGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV--~Pgkgg~~~--~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) |+.|.|. |.-+..|.+...+ ..++++-+ .|.+.-... ..+..++ .+|++..|..+..++|+.+|++|+..- T Consensus 4 ri~iiG~-G~~~~~~l~~l~~--~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ell~~~~iD~V~i~tp~~~H 80 (337) T 3ip3_A 4 KICVIGS-SGHFRYALEGLDE--ECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337) T ss_dssp EEEEECS-SSCHHHHHTTCCT--TEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH T ss_pred EEEEECC-CHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCEEEEECCCHHH T ss_conf 7999925-9999999997321--699899995778858999999999849997040999999648998889995886167 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--CE-EEECCC Q ss_conf 78899998539958998058846888999999840177--18-940685 Q gi|254781050|r 84 GDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS--SR-LIGPNC 129 (300) Q Consensus 84 ~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g--~r-iiGPNc 129 (300) .+.+.+|+++|+..++=-.=.....+..+|.+.+++++ +. .+|-|. T Consensus 81 ~~~~~~al~~gk~Vl~EKP~a~~~~ea~~l~~~~~~~~~~v~~~v~~~~ 129 (337) T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGI 129 (337) T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGG T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEECCEEE T ss_conf 9999999987996999478544401222345543200243221112455 No 62 >2g0t_A Conserved hypothetical protein; TM0796, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Probab=97.15 E-value=0.0032 Score=39.46 Aligned_cols=197 Identities=18% Similarity=0.253 Sum_probs=109.4 Q ss_pred EEECCCEEEEE--CCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCEE----ECCCCCCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 77179739998--88843-77999999986269818997658998868----7277457753140785035788636886 Q gi|254781050|r 4 LVDKNTKVLVQ--GLTGK-AGTFHTEQAILYCQTQVVGGIHPKKGSTY----WTGGNVNVPVFTTVAEAKERTAANASVI 76 (300) Q Consensus 4 l~~~~t~vivq--Gitg~-~g~~~~~~~~~y~gt~ivagV~Pgkgg~~----~~g~~~~iPvy~sv~ea~~~~~~D~avI 76 (300) +++++++.+|. |.-+. .|.. +--.+.|....+|+.|-....|+. +.+...+||+|.|+.||.+. ++++.|| T Consensus 18 m~~p~~~a~Il~~g~f~~~~gKT-a~GLlRys~~~~v~~Vi~~~aG~~a~~~l~g~~~~IPIv~sl~eA~~~-g~~~lii 95 (350) T 2g0t_A 18 LYQPGTPAAIVAWGQLGTAHAKT-TYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLII 95 (350) T ss_dssp HSCTTEEEEEECTTTTTSGGGHH-HHHHHHHCSSEEEEEEESSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEEE T ss_pred HCCCCCCEEEEECCCCCCCCCHH-HHHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCEECCHHHHHHC-CCCEEEE T ss_conf 72999978998489879998536-536764568882799977766861443306888998887879999866-9998999 Q ss_pred ECCH------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCC-C Q ss_conf 2120------45678899998539958998058846888999999840177189406851013555100020011235-7 Q gi|254781050|r 77 YVPP------SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIF-R 149 (300) Q Consensus 77 ~VP~------~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~-~ 149 (300) =+-| +.-.+.+.||+++|...+-=.-+ ...|--++.+.|+++|.+|+-=- .|.. .+-+.-+.+. . T Consensus 96 GvAp~GG~Lp~~wr~~i~~Ai~~Gl~IvsGLH~--~L~dd~el~~~A~~~g~~i~DvR-----~p~~-~l~~~~G~~~~~ 167 (350) T 2g0t_A 96 GVSNPGGYLEEQIATLVKKALSLGMDVISGLHF--KISQQTEFLKIAHENGTRIIDIR-----IPPL-ELDVLRGGIYRK 167 (350) T ss_dssp CCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC----CCHHHHHHHHHHHTCCEEESS-----SCCS-SCCCCCSGGGGC T ss_pred EECCCCCCCCHHHHHHHHHHHHCCCCEEECCHH--HHCCCHHHHHHHHHCCCEEEEEE-----CCCC-CCCCCCCCCCCC T ss_conf 733778848999999999999849916714223--32178899998876799899920-----8998-777453753357 Q ss_pred CCC-EEEE---EECCCHHH--HHHHHHHHCCCCEEEEEECC-------C------CCCCCCCHHH------HHHHHHCCC Q ss_conf 786-7999---80541478--99999997199516764055-------6------7446789999------999997399 Q gi|254781050|r 150 KGS-VGIL---SRSGTLTY--EAVFQTSQEGLGQSTAVGIG-------G------DPVKGTEFID------VLELFLADE 204 (300) Q Consensus 150 pG~-Vgiv---SqSG~l~~--e~~~~~~~~g~G~S~~VsiG-------~------D~~~G~~~~d------~L~~~~~Dp 204 (300) +++ |.++ +..|-+++ ++...+.++|+- +.++++| + |+++ .||+- +++..++| T Consensus 168 ~~~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~-a~fiaTGQTGimig~~~Gv~~Dav~-~DFvaGavE~~Vl~~~~~~- 244 (350) T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIK-AGFLATGQTGILIGADAGYVIDAVP-ADFVSGVVEKAVLKLEKTG- 244 (350) T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCC-EEEEECSHHHHHTTCSEECCGGGSB-GGGHHHHHHHHHHHHHHTT- T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCEEEEEECCCCEECCCHH-HHHHHHHHHHHHHCHHCCC- T ss_conf 861899954663440899999999999967996-3799707705764046554415225-6667899999773411279- Q ss_pred CCCEEEEEEE Q ss_conf 8728899970 Q gi|254781050|r 205 ATESIVMVGE 214 (300) Q Consensus 205 ~T~~Ivl~gE 214 (300) -+.|++-|+ T Consensus 245 -~d~iiIEGQ 253 (350) T 2g0t_A 245 -KEIVFVEGQ 253 (350) T ss_dssp -CSEEEEECC T ss_pred -CCEEEECCC T ss_conf -987998885 No 63 >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3btu_A Probab=97.12 E-value=0.0013 Score=42.00 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=78.0 Q ss_pred CEEEEECCC---CHHHHHHHHHHHHH-CCCCEEEEECCCCCCEEECCCCCCC---CCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 739998888---43779999999862-6981899765899886872774577---5314078503578863688621204 Q gi|254781050|r 9 TKVLVQGLT---GKAGTFHTEQAILY-CQTQVVGGIHPKKGSTYWTGGNVNV---PVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 9 t~vivqGit---g~~g~~~~~~~~~y-~gt~ivagV~Pgkgg~~~~g~~~~i---Pvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) =||-+.|.- |.....|.+..... .+-.|||-..+...--.-.-+..++ .+|++..|..+..++|+.+|+.|+. T Consensus 21 irvgiiG~G~~~~~~~~~h~~al~~~~~~~~lvav~d~~~e~a~~~a~~~~~~~~~~y~~~~~ll~~~~vD~V~I~tp~~ 100 (438) T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA 100 (438) T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEECCCHH T ss_conf 18999924875328999999999856998599999859999999999983999872069999995599998899919879 Q ss_pred HHHHHHHHHHHCCC-----CEEEEE-CCCCCHHHHHHHHHHHHCCCCEE-EECC Q ss_conf 56788999985399-----589980-58846888999999840177189-4068 Q gi|254781050|r 82 GAGDAIIESIEAEI-----PLIVCI-TEGIPVLDMVRVKARLEKSSSRL-IGPN 128 (300) Q Consensus 82 ~v~dai~Ea~~agi-----k~ivii-teGip~~d~~~l~~~A~~~g~ri-iGPN 128 (300) .=.+.+++|+++|+ |.+.|= .=.....+..+|++.|+++|..+ +|-| T Consensus 101 ~H~~~~~~al~aG~~~~~~KhV~~EKPla~~~~ea~~l~~~a~~~~~~~~v~~~ 154 (438) T 3btv_A 101 SHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQ 154 (438) T ss_dssp HHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECG T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 999999999983520156745999177135577888999987613986777342 No 64 >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Probab=97.04 E-value=0.0013 Score=41.98 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=75.5 Q ss_pred EEEEECCCCHHHHH-HHHH----HHHHCCCC-----------EEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCC Q ss_conf 39998888437799-9999----98626981-----------8997658998868727745775-314078503578863 Q gi|254781050|r 10 KVLVQGLTGKAGTF-HTEQ----AILYCQTQ-----------VVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAAN 72 (300) Q Consensus 10 ~vivqGitg~~g~~-~~~~----~~~y~gt~-----------ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D 72 (300) .++--|.+|+.|.. |..+ ..+-++-. ++++-++.|.-+ + .+..++| +|++..|..+..++| T Consensus 8 giig~G~~Gr~~~~~hl~~~~~a~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-~-a~~~gi~~~~~~~~ell~~~~iD 85 (383) T 3oqb_A 8 GLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEA-L-AKRFNIARWTTDLDAALADKNDT 85 (383) T ss_dssp EEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHH-H-HHHTTCCCEESCHHHHHHCSSCC T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEECCCHHHHHH-H-HHHHCCCCCCCCHHHHHCCCCCC T ss_conf 999976777655666667767777634762641544244554575599999999-9-99849992218999995699997 Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHHHCCCCEE-EECCCC Q ss_conf 68862120456788999985399589980588---46888999999840177189-406851 Q gi|254781050|r 73 ASVIYVPPSGAGDAIIESIEAEIPLIVCITEG---IPVLDMVRVKARLEKSSSRL-IGPNCP 130 (300) Q Consensus 73 ~avI~VP~~~v~dai~Ea~~agik~iviiteG---ip~~d~~~l~~~A~~~g~ri-iGPNc~ 130 (300) +.+|+.|+..-.+.+.+|+++|.. |+.|- ....+.++|++.|+++|..+ +|.|.. T Consensus 86 aV~i~tp~~~H~~~~~~al~aGkh---Vl~EKPla~~~~e~~~l~~~a~~~g~~~~vg~~~r 144 (383) T 3oqb_A 86 MFFDAATTQARPGLLTQAINAGKH---VYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKL 144 (383) T ss_dssp EEEECSCSSSSHHHHHHHHTTTCE---EEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGG T ss_pred EEEECCCHHHHHHHHHHHHHCCCC---EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 899899869999999999986994---78028863329999886546650596699997431 No 65 >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Probab=96.99 E-value=0.0041 Score=38.79 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=77.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE------CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 973999888843779999999862698189976589988687------27745775314078503578863688621204 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYW------TGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~------~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) .-||+|.|. |..|+.++++..+.+-.-+|++.++.|.-+.. .....++--++++.++++ +.|+.+.++|+. T Consensus 3 ~k~v~v~Ga-G~~g~~~~~~L~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~dvVi~~~p~~ 79 (450) T 1ff9_A 3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 79 (450) T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC-- T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHC--CCCEEEECCCCH T ss_conf 887999888-79999999999839696999979999999999758998549961799999999871--899999999820 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 56788999985399589980588468889999998401771894 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +-...+..|+++|+..+- ++ ....++.++.+.|++.|+.++ T Consensus 80 ~~~~~~~~~~~~g~~~vd-~~--~~~~~~~~~~~~a~~~g~~~~ 120 (450) T 1ff9_A 80 FHATVIKSAIRQKKHVVT-TS--YVSPAMMELDQAAKDAGITVM 120 (450) T ss_dssp CHHHHHHHHHHHTCEEEE-SS--CCCHHHHHTHHHHHHTTCEEE T ss_pred HCHHHHHHHHHCCCCEEE-CC--CCHHHHHHHHHHHHHCCEEEE T ss_conf 058999999973984895-15--106779987788741583796 No 66 >2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A* Probab=96.93 E-value=0.0063 Score=37.61 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=76.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 79739998888437799999998626981899765899------886872774577531407850357886368862120 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) +.=||+|.|. |.-|+..++..... ..-.+++++..+ ..+.+. +++-=++++.++.+ ++|+.++++|| T Consensus 15 ~~mki~vlG~-G~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~l~~~~~--~~d~Vi~~~~~ 87 (365) T 2z2v_A 15 RHMKVLILGA-GNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLK---VDASNFDKLVEVMK--EFELVIGALPG 87 (365) T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTTSEEEE---CCTTCHHHHHHHHT--TCSCEEECCCH T ss_pred CCCEEEEECC-CHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCCEE---EECCCHHHHHHHHH--CCCEEEECCCC T ss_conf 7257999997-59999999998647-986999877888998774277368---73499999999973--58999996785 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 456788999985399589980588468889999998401771894 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+-...+..|+++|+..+ -++.-.+ .+.++.+.|++.|+.++ T Consensus 88 ~~~~~v~~~~~~~g~~yi-D~~~~~~--~~~~l~~~a~~~g~~~i 129 (365) T 2z2v_A 88 FLGFKSIKAAIKSKVDMV-DVSFMPE--NPLELRDEAEKAQVTIV 129 (365) T ss_dssp HHHHHHHHHHHHTTCCEE-ECCCCSS--CGGGGHHHHHHTTCEEE T ss_pred CCHHHHHHHHHHCCCCCC-CCCCCCC--EEECCCCHHCCCCCEEE T ss_conf 102589999875285221-1223541--11112100115782378 No 67 >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Probab=96.82 E-value=0.0046 Score=38.47 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=73.9 Q ss_pred CCCEEEEECCC--CHHHHHHHHHHHHHCC-CCEEEEECCCCCCEEECCCCCCCC---CCCCHHHHC-----CCCCCCEEE Q ss_conf 79739998888--4377999999986269-818997658998868727745775---314078503-----578863688 Q gi|254781050|r 7 KNTKVLVQGLT--GKAGTFHTEQAILYCQ-TQVVGGIHPKKGSTYWTGGNVNVP---VFTTVAEAK-----ERTAANASV 75 (300) Q Consensus 7 ~~t~vivqGit--g~~g~~~~~~~~~y~g-t~ivagV~Pgkgg~~~~g~~~~iP---vy~sv~ea~-----~~~~~D~av 75 (300) |.-||-|.|.- ++.+-.|+...+.... ..|||-..|.+.--.-..+..++| +|++..+.. ...++|+.+ T Consensus 11 ~~irvgiIG~G~~~~~~~~~~~~~~~~~~~~~v~av~d~~~~~a~~~a~~~gi~~~~~y~d~~~~l~~e~~~~~~iD~V~ 90 (398) T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398) T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 96189999568757656999998635799779999968999999999998688954004999999998751799817999 Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHHHCCCCEE Q ss_conf 62120456788999985399589980588---46888999999840177189 Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEG---IPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteG---ip~~d~~~l~~~A~~~g~ri 124 (300) |+.|+..=.+.+++|+++|.. |+.|- ....+..+|+++|+++++.+ T Consensus 91 I~tp~~~H~~~~~~al~aGkh---Vl~EKPla~~~~ea~~l~~~a~~~~~~~ 139 (398) T 3dty_A 91 IATPNGTHYSITKAALEAGLH---VVCEKPLCFTVEQAENLRELSHKHNRIV 139 (398) T ss_dssp EESCGGGHHHHHHHHHHTTCE---EEECSCSCSCHHHHHHHHHHHHHTTCCE T ss_pred ECCCHHHHHHHHHHHHHCCCC---EEECCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 899869989999999986993---8985784016788999999886339669 No 68 >2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413} Probab=96.47 E-value=0.016 Score=34.93 Aligned_cols=198 Identities=19% Similarity=0.259 Sum_probs=110.1 Q ss_pred EEECCCEEEEE---CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEE---ECCCCCCCCCCCCHHHHCCCCCCCEEEEE Q ss_conf 77179739998---8884377999999986269818997658998868---72774577531407850357886368862 Q gi|254781050|r 4 LVDKNTKVLVQ---GLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTY---WTGGNVNVPVFTTVAEAKERTAANASVIY 77 (300) Q Consensus 4 l~~~~t~vivq---Gitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~---~~g~~~~iPvy~sv~ea~~~~~~D~avI~ 77 (300) .+..|.|+.+. ++.+..|..-.- .+.|..-+|||=+-+.+.|++ +.+...+||+|.|+.||.+. ++|..+|= T Consensus 3 ~l~~~~r~aI~~~~~~~~~~gKTa~g-llRy~~~~ivaVID~~~aG~~~~~~~g~~~~iPi~~s~~~A~~~-~~~~liiG 80 (349) T 2obn_A 3 RLPLNQRVAILLHEGTTGTIGKTGLA-LLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEY-KPQVLVIG 80 (349) T ss_dssp ----CCCEEEECTTTSSSSSCHHHHH-HHHHCCSCEEEEECGGGTTSCHHHHHCCCSCCCEESSHHHHGGG-CCSEEEEC T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHH-HHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCEECCHHHHHHC-CCCEEEEE T ss_conf 56778828999668858996368889-98637897799988866898387715988998624779999866-99889997 Q ss_pred CCH------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCC-C Q ss_conf 120------456788999985399589980588468889999998401771894068510135551000200112357-7 Q gi|254781050|r 78 VPP------SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFR-K 150 (300) Q Consensus 78 VP~------~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~-p 150 (300) +-| +.-...+.||+++|...+-=.-+-. .|-.++.+.|+ +|.+++-=-.+ |...++ --+.... + T Consensus 81 vAp~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~L--~ddpel~~~a~-~g~~i~DvR~p----~~~l~~--~~G~~~~~~ 151 (349) T 2obn_A 81 IAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPL--ANIPDLNALLQ-PGQLIWDVRKE----PANLDV--ASGAARTLP 151 (349) T ss_dssp CCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCC--TTCHHHHHHCC-TTCCEEETTCC----CSSCCC--CCSGGGGCS T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHH--CCCHHHHHHHH-CCCEEEECCCC----CCCCCC--CCCCCCCCC T ss_conf 2466786899999999999980983304367661--48898999975-79989975789----987762--256322689 Q ss_pred CC-EEEEE---ECCCHHH--HHHHHHHHCCCCEEEEEECC-------C-----CCCCCCCHHH-HHHH--HHCCCCCCEE Q ss_conf 86-79998---0541478--99999997199516764055-------6-----7446789999-9999--9739987288 Q gi|254781050|r 151 GS-VGILS---RSGTLTY--EAVFQTSQEGLGQSTAVGIG-------G-----DPVKGTEFID-VLEL--FLADEATESI 209 (300) Q Consensus 151 G~-VgivS---qSG~l~~--e~~~~~~~~g~G~S~~VsiG-------~-----D~~~G~~~~d-~L~~--~~~Dp~T~~I 209 (300) +. |.++- ..|-+++ ++...+.++|+- +.++++| + |+++ +||+- .++. ++.+++.+.| T Consensus 152 ~~rvl~vGTDcavGK~tTal~l~~~l~~~G~~-a~fiaTGQTGili~g~Gv~iDav~-~DFvaGavE~~v~~~~~~~D~i 229 (349) T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWR-SKFLATGQTGVMLEGDGVALDAVR-VDFAAGAVEQMVMRYGKNYDIL 229 (349) T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCC-EEEECCSHHHHHHHSCSCCGGGSB-HHHHHHHHHHHHHHHTTTCSEE T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-EEEEECCCEEEEECCCCEECCCHH-HHHHHHHHHHHHHHCCCCCCEE T ss_conf 86899960463420789999999999977997-469972760565226740105306-7778889999655326899969 Q ss_pred EEEEE Q ss_conf 99970 Q gi|254781050|r 210 VMVGE 214 (300) Q Consensus 210 vl~gE 214 (300) ++-|+ T Consensus 230 iIEGQ 234 (349) T 2obn_A 230 HIEGQ 234 (349) T ss_dssp EECCC T ss_pred EECCC T ss_conf 97684 No 69 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=96.27 E-value=0.065 Score=31.14 Aligned_cols=104 Identities=18% Similarity=0.075 Sum_probs=68.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECC-------CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 9739998888437799999998626981899-7658-------9988687277457753140785035788636886212 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHP-------KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~P-------gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) ..||+|.|. |..|+.+++.+...+...|.. ..+| ..+..... .++.-.+.+.+... ++|+.++..| T Consensus 5 ~~kI~ViGa-G~vG~~va~~L~~~~~~~v~~~dr~~~~~~~~~~~~~~~~~---~d~~d~~~l~~~l~--~~DvVi~~~p 78 (118) T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQ---VDAKDEAGLAKALG--GFDAVISAAP 78 (118) T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEE---CCTTCHHHHHHHTT--TCSEEEECSC T ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCCCC---CCCCCHHHHHHHHC--CCCEEEECCC T ss_conf 078899867-99999999999878998478612656664100012222111---24489999999985--9989998378 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 04567889999853995899805884688899999984017 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~ 120 (300) +.+....+..|+++|+..+ -+++-++ ...++.+++++. T Consensus 79 ~~~~~~ia~aa~~~g~~~~-Dl~~d~~--~~~~i~~l~~~A 116 (118) T 3ic5_A 79 FFLTPIIAKAAKAAGAHYF-DLTEDVA--ATNAVRALVEDS 116 (118) T ss_dssp GGGHHHHHHHHHHTTCEEE-CCCSCHH--HHHHHHHHHHCC T ss_pred CCCCHHHHHHHHHHCCCEE-ECCCCHH--HHHHHHHHHHHC T ss_conf 3045999999999099979-8889989--999999999867 No 70 >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Probab=96.14 E-value=0.053 Score=31.68 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=72.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCC--------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 399988884377999999986269818-997658998--------86872774577531407850357886368862120 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKG--------STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkg--------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) ||+|.|. |..|+..+.........+| |+.-++.|. .+.+. +++-=.+++.++++. .|+.|..+|+ T Consensus 25 kIlvlGa-G~vg~~~a~~L~~~~~~~v~va~r~~~~a~~~~~~~~~~~~~---~D~~d~~~l~~~i~~--~DvVI~a~P~ 98 (467) T 2axq_A 25 NVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAIS---LDVTDDSALDKVLAD--NDVVISLIPY 98 (467) T ss_dssp EEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEE---CCTTCHHHHHHHHHT--SSEEEECSCG T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEE---EECCCHHHHHHHHHC--CCEEEECCCH T ss_conf 2899998-789999999997089934999969999999986015984699---847999999998725--9999999771 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 456788999985399589980588468889999998401771894 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+-...+..|+++|+..+ -++. ...+++++.+.|++.|+.++ T Consensus 99 ~~~~~va~~ai~~g~~~v-d~s~--~~~~~~~L~~~a~~~g~~~~ 140 (467) T 2axq_A 99 TFHPNVVKSAIRTKTDVV-TSSY--ISPALRELEPEIVKAGITVM 140 (467) T ss_dssp GGHHHHHHHHHHHTCEEE-ECSC--CCHHHHHHHHHHHHHTCEEE T ss_pred HHCHHHHHHHHHHCCCEE-CCHH--HHHHHHHHHHHHHCCCEEEE T ss_conf 217899999998199674-0155--17879998767632784771 No 71 >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Probab=95.83 E-value=0.034 Score=32.89 Aligned_cols=91 Identities=22% Similarity=0.324 Sum_probs=63.0 Q ss_pred ECCCCCCEEE-CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHH Q ss_conf 6589988687-27745775314078503578863688621204567889999853995--89980588468889999998 Q gi|254781050|r 40 IHPKKGSTYW-TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIP--LIVCITEGIPVLDMVRVKAR 116 (300) Q Consensus 40 V~Pgkgg~~~-~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik--~iviiteGip~~d~~~l~~~ 116 (300) ..|.|+--.+ +.+.+++-+.++..||++. +|+-+++||.+.....+++-+...+| .+++.+.+++.....++... T Consensus 112 ~~~~~~~~~~~~~E~~Gv~vt~D~~EAV~~--ADiVIlaVP~~~~~~~V~~eI~~~Lke~aIlsd~sSi~~~~l~~~~~~ 189 (358) T 2b0j_A 112 PKPPKACIHLVHPEDVGLKVTSDDREAVEG--ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD 189 (358) T ss_dssp CCTTTEEEESSCGGGGTCEEESCHHHHHTT--CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHCCCEEECCHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCC T ss_conf 999631112379887798887689999833--999999443576699999999755657868998688868999997300 Q ss_pred HHCCCCEEEECCCCEEE Q ss_conf 40177189406851013 Q gi|254781050|r 117 LEKSSSRLIGPNCPGIL 133 (300) Q Consensus 117 A~~~g~riiGPNc~Gii 133 (300) ..+..+|++ ||.+..+ T Consensus 190 ~~~~vVr~~-p~~P~~V 205 (358) T 2b0j_A 190 LGREDLNIT-SYHPGCV 205 (358) T ss_dssp TTCTTSEEE-ECBCSSC T ss_pred CCCCCEEEE-CCCCCCC T ss_conf 378712752-5788725 No 72 >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Probab=95.75 E-value=0.0095 Score=36.47 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=55.7 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHH--HHHHHH Q ss_conf 78679998054147899999997199516764055674467899999999973998728899970-587248--999999 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAE--EEAAQF 226 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E--~~aa~f 226 (300) ...|++|.-+|++.. |-+..-++|.| ++.+.|+...+|++.|+|+|-.. .||... +..++. T Consensus 300 ~~~Iavi~~~G~I~~-----------g~~~~~~~~~~-----~~~~~l~~a~~d~~vkavvLrInSpGGs~~as~~i~~~ 363 (593) T 3bf0_A 300 GDSIGVVFANGAIMD-----------GEETQGNVGGD-----TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAE 363 (593) T ss_dssp SCEEEEEEEEEEEES-----------SSSCTTSEEHH-----HHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHH T ss_pred CCCEEEEEEECCEEC-----------CCCCCCCCCCH-----HHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH T ss_conf 784059996342404-----------77767876617-----88999986650754217999997989857789999999 Q ss_pred HHHHHHCCCCCCEEEEEEEECCCC Q ss_conf 998642267552689984301576 Q gi|254781050|r 227 LKDEAKRGRKKPIVGFVAGKTAPP 250 (300) Q Consensus 227 i~~~~~~~~~KPVva~~~GrtAp~ 250 (300) |+..++ ..|||+++..+..|.. T Consensus 364 i~~~k~--~~KPVv~~~~~~aASg 385 (593) T 3bf0_A 364 LAAARA--AGKPVVVSMGGMAASG 385 (593) T ss_dssp HHHHHH--TTCCEEEEEEEEEETH T ss_pred HHHHHH--CCCCEEEEECCCCCHH T ss_conf 999985--4997899987866415 No 73 >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Probab=95.66 E-value=0.01 Score=36.33 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=93.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC-CCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 9739998888437799999998626981899765899886872-774577531407850357886368862120456788 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWT-GGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~-g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) +-+|.|.|. |.||.-|+.++.+ +|-+|+-|..++. ..|. ....+.-|+ ++.||++. +|+.++.+|-..-++. T Consensus 16 ~k~iaviGy-GsQG~a~AlNlrD-sG~~V~vglr~~s--~s~~~A~~~Gf~v~-~~~ea~~~--adiv~~L~pD~~q~~~ 88 (338) T 1np3_A 16 GKKVAIIGY-GSQGHAHACNLKD-SGVDVTVGLRSGS--ATVAKAEAHGLKVA-DVKTAVAA--ADVVMILTPDEFQGRL 88 (338) T ss_dssp TSCEEEECC-SHHHHHHHHHHHH-TTCCEEEECCTTC--HHHHHHHHTTCEEE-CHHHHHHT--CSEEEECSCHHHHHHH T ss_pred CCEEEEEEE-CHHHHHHHHHHHH-CCCCEEEEECCCC--HHHHHHHHCCCEEC-CHHHHHHH--CCEEEEECCHHHHHHH T ss_conf 998999766-7276998866685-4997799979996--30999998798431-59999864--8877650887777999 Q ss_pred HHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEE Q ss_conf 9999853995--89980588468889999998401771894068510135551000200112357786799980 Q gi|254781050|r 87 IIESIEAEIP--LIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSR 158 (300) Q Consensus 87 i~Ea~~agik--~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSq 158 (300) -.+.+...++ ..++++.||.++- ..+..-+.-++.++-|-++|-..-....-|. =-|.-+++--- T Consensus 89 y~~~i~p~l~~g~~l~faHGf~i~~--~~i~p~~~vdv~mvAPkgpG~~vR~~y~~g~-----Gvp~~~av~qd 155 (338) T 1np3_A 89 YKEEIEPNLKKGATLAFAHGFSIHY--NQVVPRADLDVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQD 155 (338) T ss_dssp HHHHTGGGCCTTCEEEESCCHHHHT--TSSCCCTTCEEEEEEESSCSHHHHHHHHTTC-----CCCEEEEEEEC T ss_pred HHHHHHHHCCCCCEEEECCCCEEEE--CCEECCCCCCEEEECCCCCCHHHHHHHHCCC-----CCCEEEEEEEC T ss_conf 9876664358887798625540420--3302588886798788999604999986599-----97558999878 No 74 >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Probab=95.47 E-value=0.021 Score=34.27 Aligned_cols=137 Identities=15% Similarity=0.236 Sum_probs=88.6 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---CCEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHH Q ss_conf 79739998888437799999998626981899765899---8868727-7457753140785035788636886212045 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK---GSTYWTG-GNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk---gg~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300) |+-+|.|.|. |.||.-|+.++.+ +|-||+-|..|+. +...|.. ...+.-|+ ++.||++. +|+.++.+|-.. T Consensus 36 k~k~iaViGy-GsQG~ahAlNLrD-SG~~V~Vglr~~s~~~~s~S~~~A~~dGf~v~-~~~eA~~~--aDvv~~L~pD~~ 110 (491) T 1yrl_A 36 QGKKVVIVGC-GAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQ--ADLVINLTPDKQ 110 (491) T ss_dssp TTSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGG--CSEEEECSCHHH T ss_pred CCCEEEEEEE-CCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHCCCEEC-CHHHHHHH--CCEEEECCCHHH T ss_conf 5997999766-7134999867786-59977999467876545325999997699756-79999863--798888698467 Q ss_pred HHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEE Q ss_conf 678899998539--95899805884688899999984017718940685101355510002001123577867999 Q gi|254781050|r 83 AGDAIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGIL 156 (300) Q Consensus 83 v~dai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~Vgiv 156 (300) -.+.- +-+... -.....++-||.++- ......+.-++.++-|-+||-..-....-|. + -|+-+++- T Consensus 111 q~~vy-~~i~p~lk~G~~L~faHGfnI~~--~~i~pp~dvdV~mvAPKgpG~~VR~~y~~G~--G---vp~liAV~ 178 (491) T 1yrl_A 111 HSDVV-RTVQPLMKDGAALGYSHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGF--G---VPTLIAVH 178 (491) T ss_dssp HHHHH-HHHHHHSCTTCEEEESSTHHHHT--SCCCCCTTSEEEEEEESCSSTHHHHHHHTTC--C---CCEEEEEC T ss_pred HHHHH-HHHHHCCCCCCEEEECCCCHHCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHCCC--C---CCEEEEEE T ss_conf 99999-88513169876676426530114--7722588864899778999707999987279--8---75378873 No 75 >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Probab=95.24 E-value=0.054 Score=31.67 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=81.9 Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 95677179739998888437799999998626981899765899886872774577531407850357886368862120 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) |+.+-.++.||-|.|+ |+-|+--+....+. |-+ |.+.++.+.-..-. ...+.-+.+|..|+++. +|+-+++||- T Consensus 23 ~~~~~~~~~KIg~IGl-G~MG~~mA~~L~k~-G~~-V~~~d~~~~k~~~l-~~~Ga~~~~s~~e~~~~--adiii~~v~~ 96 (316) T 2uyy_A 23 MGSITPTDKKIGFLGL-GLMGSGIVSNLLKM-GHT-VTVWNRTAEKCDLF-IQEGARLGRTPAEVVST--CDITFACVSD 96 (316) T ss_dssp --CCCCCSSCEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSSGGGGHHH-HHTTCEECSCHHHHHHH--CSEEEECCSS T ss_pred CCCCCCCCCEEEEECC-HHHHHHHHHHHHHC-CCE-EEEECCCHHHHHHH-HHCCCEECCCHHHHHHC--CCEEEEECCC T ss_conf 3357999996999831-79899999999978-996-99983999999999-98599465999999845--9859997267 Q ss_pred HHHHHHHHHH---HHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 4567889999---8539--958998058846888999999840177189406 Q gi|254781050|r 81 SGAGDAIIES---IEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 81 ~~v~dai~Ea---~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300) +.+...+... +..+ -..+++.+..++....+++.+.++++|++.+.- T Consensus 97 ~~a~~~v~~~~~~l~~~~~~g~iiid~sT~~p~~~~~~~~~l~~~g~~~vda 148 (316) T 2uyy_A 97 PKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEA 148 (316) T ss_dssp HHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC T ss_pred CHHHHHHHHCCCHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 3667999635405764088998899557887677999999999759937725 No 76 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=95.21 E-value=0.1 Score=29.82 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=79.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 73999888843779999999862698-1899765899886872774577--53140785035788636886212045678 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQT-QVVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt-~ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) -+|.|.|. |.-|+.-++...+. +. .-|.|+.+.+-..... ...++ .++++..++... +|+-++++|+..+.+ T Consensus 6 k~I~IIG~-GlmG~Sia~al~~~-~~~~~V~~~D~~~~~~~~a-~~~g~id~~~~~~~~~~~~--~DlVIla~P~~~~~~ 80 (317) T 3dzb_A 6 KTIYIAGL-GLIGGSLALGIKRD-HPDYEILGYNRSDYSRNIA-LERGIVDRATGDFKEFAPL--ADVIILAVPIKQTMA 80 (317) T ss_dssp CEEEESCC-SHHHHHHHHHHHTT-CTTSEEEEECSCHHHHHHH-HHTCSCSEEESCHHHHGGG--CSEEECCSCHHHHHH T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHH-HHCCCCCCCCCCHHHHHCC--CCEEEEECCHHHHHH T ss_conf 87999921-88999999999960-9998899996999999999-9869974003889886145--898999168126678 Q ss_pred HHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEE------ECCCCEEEC Q ss_conf 8999985399--589980588468889999998401771894------068510135 Q gi|254781050|r 86 AIIESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLI------GPNCPGILT 134 (300) Q Consensus 86 ai~Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~rii------GPNc~Gii~ 134 (300) .+.|...... ..++.-+..+.......+.+.....+.++| ||-..|+-+ T Consensus 81 vl~~l~~~~~~~~~ivtDv~SvK~~~~~~~~~~~~~~~~~fV~~HPmaG~e~~G~~~ 137 (317) T 3dzb_A 81 YLKELADLDLKDNVIITDAGSTKREIVEAAERYLTGKNVQFVGSHPMAGSHKSGAIA 137 (317) T ss_dssp HHHHHTTSCCCTTCEEECCCSCCHHHHHHHHHHHTTSSCEECEEEECBCC------C T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHH T ss_conf 899987555046759986056562389999986566885110366554645567767 No 77 >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Probab=94.66 E-value=0.14 Score=28.92 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=55.6 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 179739998888437799999998626981899765--899886872774577531407850357886368862120456 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH--PKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~--Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) |...||++.|.. ..|..-.+....-..-+++|.+. |.+-|..+.| +|||.+ .+. T Consensus 2 n~k~rvlI~Gag-~~g~~l~~~l~~~~~y~vvgfiD~d~~~~g~~i~g----i~V~~~-~~l------------------ 57 (141) T 3nkl_A 2 NAKKKVLIYGAG-SAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQG----ITIYRP-KYL------------------ 57 (141) T ss_dssp -CCEEEEEECCS-HHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETT----EEEECG-GGH------------------ T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECC----CCCCCH-HHH------------------ T ss_conf 987779998779-89999999998789966999995786414148678----203668-787------------------ Q ss_pred HHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 7889999-85399589980588468889999998401771894 Q gi|254781050|r 84 GDAIIES-IEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 84 ~dai~Ea-~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+. -+..+..+++.....+.....++...|++.++++. T Consensus 58 ----~~~i~~~~i~~viia~p~~~~~~~~~l~~~~~~~~i~i~ 96 (141) T 3nkl_A 58 ----ERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVL 96 (141) T ss_dssp ----HHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEE T ss_pred ----HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEE T ss_conf ----788864686389994588899999999998750597237 No 78 >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} Probab=94.49 E-value=0.04 Score=32.46 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=61.9 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 7973999888843779999999862698189976--58998868727745775314078503578863688621204567 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI--HPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV--~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) ++++|.+.|. |+-|+...+...+- |-++++-. +|.+.... -+..++..+++..|+.+. .|+.+++||+.... T Consensus 9 ~~~~I~iIG~-G~mG~~la~~L~~~-g~~v~~v~~r~~~~~~~l--~~~~~~~~~~~~~~~~~~--~divilav~~~~i~ 82 (266) T 3d1l_A 9 EDTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTEESAREL--AQKVEAEYTTDLAEVNPY--AKLYIVSLKDSAFA 82 (266) T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHH--HHHTTCEEESCGGGSCSC--CSEEEECCCHHHHH T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHH--HHHCCCEEECCHHHHHCC--CCCEEEECCHHHHH T ss_conf 9991999833-09999999999988-996799978999999999--987698386577886303--55358845788899 Q ss_pred HHHHHHHHCC-CCEEEEEC-CCCCH Q ss_conf 8899998539-95899805-88468 Q gi|254781050|r 85 DAIIESIEAE-IPLIVCIT-EGIPV 107 (300) Q Consensus 85 dai~Ea~~ag-ik~iviit-eGip~ 107 (300) +.+.+..+.- -..+++.+ .+++. T Consensus 83 ~v~~~l~~~~~~~~ii~~~s~~~~~ 107 (266) T 3d1l_A 83 ELLQGIVEGKREEALMVHTAGSIPM 107 (266) T ss_dssp HHHHHHHTTCCTTCEEEECCTTSCG T ss_pred HHHHHHHHHCCCCCEEEEECCCCCH T ss_conf 9999999744645478861687528 No 79 >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reductase; structural genomics, protein structure initiative; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A Probab=94.47 E-value=0.25 Score=27.43 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=61.0 Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC-----CCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 71797399988884377999999986269818997658998868727-----7457753140785035788636886212 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG-----GNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g-----~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) -+|+-||.|-|.||--|..-.+...+.-.-++..--+....|+.+.. .....|++....+.. ..++|+++.+.| T Consensus 13 ~~k~~kVaIlGATG~vG~~li~lL~~hP~~el~~laS~~saGk~i~~~~~~l~~~~~~~~~~~~~~~-~~~~Divf~alp 91 (359) T 1xyg_A 13 PEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVKDAD-FSTVDAVFCCLP 91 (359) T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGGGCC-GGGCSEEEECCC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHH-HHCCCEEEECCC T ss_conf 8998769998936399999999997499858999997588896989968300288655303453655-304788998589 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 04567889999853995899805 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviit 102 (300) .....+.+.++. ++.+ +|..+ T Consensus 92 ~~~s~~~~~~l~-~~~~-vvd~s 112 (359) T 1xyg_A 92 HGTTQEIIKELP-TALK-IVDLS 112 (359) T ss_dssp TTTHHHHHHTSC-TTCE-EEECS T ss_pred CCHHHHHHHHHH-HCCE-EEECC T ss_conf 604899999876-3471-66225 No 80 >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Probab=94.27 E-value=0.039 Score=32.53 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=77.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 73999888843779999999862698189-97658998868727745775314078503578863688621204567889 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) -||-|.|+ |.-|+--+++..+- |.+|. .-++|.|--+.. ..+..+.+|..|+.+. +|+-+++||-..+.+.+ T Consensus 6 mkIgvIGl-G~MG~~~a~~L~~~-G~~V~~~d~~~~~~~~l~---~~g~~~~~s~~e~~~~--~divi~~v~~~~~v~~v 78 (299) T 1vpd_A 6 MKVGFIGL-GIMGKPMSKNLLKA-GYSLVVSDRNPEAIADVI---AAGAETASTAKAIAEQ--CDVIITMLPNSPHVKEV 78 (299) T ss_dssp CEEEEECC-STTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH---HTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHH T ss_pred CEEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH---HCCCEECCCHHHHHHC--CCEEEEECCCHHHHHHH T ss_conf 52889830-89889999999978-996999809999999999---8599454899999847--99899975987899999 Q ss_pred H---HHHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 9---99853--995899805884688899999984017718940685 Q gi|254781050|r 88 I---ESIEA--EIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300) Q Consensus 88 ~---Ea~~a--gik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300) . +.+.. .-..+++-..-++..+.+++.+.++++|++.+---. T Consensus 79 ~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~G~~~vd~pv 125 (299) T 1vpd_A 79 ALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 125 (299) T ss_dssp HHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCE T ss_pred HHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCC T ss_conf 95824687349999989989989768999999999976995877788 No 81 >3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein); rossmann fold, NADPH, knotted protein; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Probab=94.03 E-value=0.075 Score=30.72 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=83.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHHH-----CCCCEEEEECCCCCCEEECC-CCCCCCCC----CCHHHHCCCCCCCEEEEEC Q ss_conf 73999888843779999999862-----69818997658998868727-74577531----4078503578863688621 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILY-----CQTQVVGGIHPKKGSTYWTG-GNVNVPVF----TTVAEAKERTAANASVIYV 78 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y-----~gt~ivagV~Pgkgg~~~~g-~~~~iPvy----~sv~ea~~~~~~D~avI~V 78 (300) -+|.|.|. |.||.-|+.++.+- .|-||+-|..++. ..|.- ...+..++ -++.||+++ +|+-++.+ T Consensus 55 K~IaVIGy-GsQG~aqAlNLRDSg~e~~sG~~V~vGlR~~s--~s~~~A~~dGf~~~~~~v~~i~ea~~~--aDiv~~L~ 129 (525) T 3fr7_A 55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS--KSFDEARAAGFTEESGTLGDIWETVSG--SDLVLLLI 129 (525) T ss_dssp SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTC--SCHHHHHHTTCCTTTTCEEEHHHHHHH--CSEEEECS T ss_pred CEEEEECC-CHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC--CCHHHHHHCCCCCCCCCCCCHHHHHHH--CCEEEECC T ss_conf 87999686-74768988648576766678844999958987--329999976997367764569999865--99999938 Q ss_pred CHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHH-HHHHHHHCCCCEEEECCCCEEECC Q ss_conf 20456788999985399--5899805884688899-999984017718940685101355 Q gi|254781050|r 79 PPSGAGDAIIESIEAEI--PLIVCITEGIPVLDMV-RVKARLEKSSSRLIGPNCPGILTP 135 (300) Q Consensus 79 P~~~v~dai~Ea~~agi--k~iviiteGip~~d~~-~l~~~A~~~g~riiGPNc~Gii~p 135 (300) |-..-++.-.+ +...+ ...+.++.||..+-.. .....-+.-++.++-|-|+|-..- T Consensus 130 pD~~q~~vy~~-I~p~lk~G~~L~fsHGF~i~~~~~~~i~pp~dvdVimVAPKgpG~~VR 188 (525) T 3fr7_A 130 SDAAQADNYEK-IFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVR 188 (525) T ss_dssp CHHHHHHHHHH-HHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHH T ss_pred CCHHHHHHHHH-HHHCCCCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECCCCCCHHHH T ss_conf 83167999998-863379976101146651210312541378885089978999956899 No 82 >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* Probab=93.75 E-value=0.37 Score=26.34 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=79.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHH---CCCCEEEEECCCCCCEEECCCCCCCCCCCCH-HHHCCCCCCCEEEEECCHHHHHH Q ss_conf 3999888843779999999862---6981899765899886872774577531407-85035788636886212045678 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY---CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTV-AEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y---~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv-~ea~~~~~~D~avI~VP~~~v~d 85 (300) ||.|-|.||--|.--.+....- --..+++-.+....|+.+.-.....++++.. .|..+ ++|+...++|.....+ T Consensus 3 kVaIvGAtGy~G~eLirlL~~h~~~p~~el~~~~S~~~aGk~~~~~~~~~~~~~~~~~~~~~--~~DvvFlalPhg~s~~ 80 (367) T 1t4b_A 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGDYTNE 80 (367) T ss_dssp EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHH--TCSEEEECSCHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEECCCEEEEECCCCHHHCC--CCCEEEECCCCCCCHH T ss_conf 89996872299999999998467998527999984033898613589333565258975724--7888998888541113 Q ss_pred HHHHHHHCCCCEEEEEC-CCC----------CHHHHHHHHHHHHCCCCEEEECCCCEEE Q ss_conf 89999853995899805-884----------6888999999840177189406851013 Q gi|254781050|r 86 AIIESIEAEIPLIVCIT-EGI----------PVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300) Q Consensus 86 ai~Ea~~agik~iviit-eGi----------p~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300) .+.++.++|.+.+||=- .-+ |..-...+.+...+...-+.+|||.-+. T Consensus 81 ~~~~l~~~g~~~~VIDlSadfRl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 139 (367) T 1t4b_A 81 IYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSL 139 (367) T ss_dssp HHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCHHHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 30787753873699954514542443441156457456778763145512577825899 No 83 >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Probab=93.56 E-value=0.39 Score=26.14 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=81.6 Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 95677179739998888437799999998626981899-76589988687277457753140785035788636886212 Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) ||++ .++-||-+.|+ |+-|+--+.+.++- |.+|.. =++|.+--... ....++++++..|+.+. +|+-++.|| T Consensus 1 ~~~~-~~~mkIg~IGl-G~MG~~mA~~L~~~-G~~v~v~dr~~~~~~~l~--~~g~~~~~~s~~e~~~~--~diii~~v~ 73 (303) T 3g0o_A 1 MSLT-GTDFHVGIVGL-GSMGMGAARSCLRA-GLSTWGADLNPQACANLL--AEGACGAAASAREFAGV--VDALVILVV 73 (303) T ss_dssp -------CCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHH--HTTCSEEESSSTTTTTT--CSEEEECCS T ss_pred CCCC-CCCCEEEEEEH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHH--HCCCCCCCCCHHHHHHC--CCEEEEEEE T ss_conf 9988-99886999842-78789999999978-994899789999999999--82896446999999822--894688862 Q ss_pred HHHHHHHHHHHHHC-----CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 04567889999853-----995899805884688899999984017718940685 Q gi|254781050|r 80 PSGAGDAIIESIEA-----EIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300) Q Consensus 80 ~~~v~dai~Ea~~a-----gik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300) -+...+.+....+. .-..+++...-++..+.+++.+.++++|...+---. T Consensus 74 ~~~~~~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapv 128 (303) T 3g0o_A 74 NAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPV 128 (303) T ss_dssp SHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCE T ss_pred CCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 2022200024543310014676323305778878889999999853885434656 No 84 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* Probab=93.06 E-value=0.2 Score=27.99 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=77.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 73999888843779999999862698189-97658998868727745775314078503578863688621204567889 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) +||-+.|+ |.-|+--+++.++. |.+|. .-.+|.|-.... ..+.-+-+|..|+.+. +|+-+++||.+.+.+.+ T Consensus 4 ~kIg~IGl-G~MG~~mA~~L~~~-G~~v~v~dr~~~~~~~l~---~~Ga~~~~s~~e~~~~--~dvvi~~l~~~~~~~~V 76 (302) T 2h78_A 4 KQIAFIGL-GHMGAPMATNLLKA-GYLLNVFDLVQSAVDGLV---AAGASAARSARDAVQG--ADVVISMLPASQHVEGL 76 (302) T ss_dssp CEEEEECC-STTHHHHHHHHHHT-TCEEEEECSSHHHHHHHH---HTTCEECSSHHHHHTT--CSEEEECCSCHHHHHHH T ss_pred CEEEEEEE-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHH---HCCCEECCCHHHHHHC--CCCCCCCCCCHHHHHHH T ss_conf 88999825-48899999999978-997899849999999999---8699783899999856--78611038947779999 Q ss_pred HHHH---HCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 9998---5399--589980588468889999998401771894 Q gi|254781050|r 88 IESI---EAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 88 ~Ea~---~agi--k~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+.. .++. ..++|-+.-+...+.+++.+.++++|++.+ T Consensus 77 ~~~~~g~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 119 (302) T 2h78_A 77 YLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (302) T ss_dssp HHSSSCGGGSSCSSCEEEECSCCCHHHHHHHHHHHHHTTCCEE T ss_pred HHCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 7163005325899978998888998999999999997699289 No 85 >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2} Probab=92.99 E-value=0.35 Score=26.49 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=77.2 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 3999888843779999999862698189-976589988687277457753140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) ||=+.|+ |+-|+--+++.++- |-++. .-++|.+ ... ...+..+.+|.+|+.+. +|+.+++||-....+.+. T Consensus 5 kIg~IGl-G~MG~~ma~~L~~~-g~~v~v~d~~~~~--~~~--~~~Ga~~~~s~~e~~~~--~d~vi~~v~~~~~~~~v~ 76 (295) T 1yb4_A 5 KLGFIGL-GIMGSPMAINLARA-GHQLHVTTIGPVA--DEL--LSLGAVNVETARQVTEF--ADIIFIMVPDTPQVEDVL 76 (295) T ss_dssp EEEECCC-STTHHHHHHHHHHT-TCEEEECCSSCCC--HHH--HTTTCBCCSSHHHHHHT--CSEEEECCSSHHHHHHHH T ss_pred EEEEEEH-HHHHHHHHHHHHHC-CCCEEEEECCHHH--HHH--HHCCCEECCCHHHHHHH--CCCEEECCCCCHHHHHHH T ss_conf 8998703-78899999999977-9917998188889--999--98699466899999860--885022168832343420 Q ss_pred HHHH---CC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-EC Q ss_conf 9985---39--9589980588468889999998401771894-06 Q gi|254781050|r 89 ESIE---AE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GP 127 (300) Q Consensus 89 Ea~~---ag--ik~iviiteGip~~d~~~l~~~A~~~g~rii-GP 127 (300) ...+ .+ -..++|.+.-....+.+++.+.+++.|++.+ .| T Consensus 77 ~~~~~~~~~~~~g~iiId~sT~~p~~~~~~~~~~~~~g~~~ldaP 121 (295) T 1yb4_A 77 FGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAP 121 (295) T ss_dssp HSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC T ss_pred CCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECC T ss_conf 461445543379988996478986699999999997299699789 No 86 >3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Probab=92.94 E-value=0.23 Score=27.68 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=66.5 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCHHH----HHHHHHCCCCCCEEEEEEECCCHH---H Q ss_conf 78679998054147899999997199--51676405567446789999----999997399872889997058724---8 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGL--GQSTAVGIGGDPVKGTEFID----VLELFLADEATESIVMVGEIGGSA---E 220 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~--G~S~~VsiG~D~~~G~~~~d----~L~~~~~Dp~T~~Ivl~gEiGG~~---E 220 (300) .|+||++.--++|+...++++...|- --.-+.-+||.+.. ....+ +|+.+..||+.++|++-.= ||.. + T Consensus 272 dG~Ig~~~nGaGl~mat~D~i~~~gg~~~pANflD~gG~~~~-e~v~~~~~~~l~l~~~~~~v~~i~ini~-GGI~~~~~ 349 (425) T 3mwd_A 272 KGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSE-QQTYDYAKTILSLMTREKHPDGKILIIG-GSIANFTN 349 (425) T ss_dssp TCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCH-HHHHHHHHHHHHHTTSSCCTTCEEEEEC-BCBCSSSC T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCH-HHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCCHH T ss_conf 886799973230245689999982788788657887289968-8999999999977613899888999974-88544378 Q ss_pred HH-----HHHHHHHHH--HCCCCCCEEEEEEEECCCCCCCC Q ss_conf 99-----999999864--22675526899843015765532 Q gi|254781050|r 221 EE-----AAQFLKDEA--KRGRKKPIVGFVAGKTAPPGRTM 254 (300) Q Consensus 221 ~~-----aa~fi~~~~--~~~~~KPVva~~~GrtAp~g~~~ 254 (300) .. ..+.++... ....++|||+-..|..+..|+++ T Consensus 350 va~~~~gIv~a~~~~~~~~~~~~vpivvRl~Gtn~eeg~~i 390 (425) T 3mwd_A 350 VAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRV 390 (425) T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHH T ss_conf 88776689999998410224577409998998988999999 No 87 >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, gluconate utilization, pentose shunt; HET: GLO; 1.50A {Escherichia coli k-12} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Probab=92.77 E-value=0.33 Score=26.67 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=80.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEE-CCCCCCCCCCCCHHHHCCCC-CCCEEEEECCHHHHHH Q ss_conf 739998888437799999998626981899-76589988687-27745775314078503578-8636886212045678 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYW-TGGNVNVPVFTTVAEAKERT-AANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~-~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP~~~v~d 85 (300) -||=+.|+ |..|.-.+.+..+- |-+|.. -.+|.|-.... .+....+..+++++|.++.- .+|.-++.||.....+ T Consensus 16 ~kIG~IGL-G~MG~~mA~nL~~~-G~~V~v~dr~~~k~~~l~~~~~~~~~~~~~s~~e~v~~~~~~~~Ii~~v~~~~~v~ 93 (480) T 2zyd_A 16 QQIGVVGM-AVMGRNLALNIESR-GYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTD 93 (480) T ss_dssp BSEEEECC-SHHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHH T ss_pred CEEEEEEE-HHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCCCCCCHHCCHHHHHHHCCCCCEEEEECCCCHHHH T ss_conf 86999830-79899999999977-99269982999999999983898767512329999983799998999799975799 Q ss_pred HHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 8999985399--5899805884688899999984017718940685101 Q gi|254781050|r 86 AIIESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 86 ai~Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) .+.+-+-... ..++|-+.-....+.+++.+.+++.|++.++---.|- T Consensus 94 ~vi~~l~~~l~~g~iiID~sT~~~~~t~~~~~~l~~~gi~flDapVSGG 142 (480) T 2zyd_A 94 AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGG 142 (480) T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCC T ss_conf 9999998418899789825875157999999999975996315625667 No 88 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=92.26 E-value=0.45 Score=25.77 Aligned_cols=114 Identities=8% Similarity=0.125 Sum_probs=78.7 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 179739998888437799999998626981899-7658998868727745775314078503578863688621204567 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +|+-||-+.|+ |.-|+-.+++..+- |.+|.. -.+|.|--... ..+.-+.+|..|+.+. .|+-++++|-..+. T Consensus 2 ~~~MkIg~IGl-G~MG~~mA~~L~~~-g~~v~v~dr~~~~~~~l~---~~Ga~~~~s~~e~~~~--~dvv~~~l~~~~a~ 74 (301) T 3cky_A 2 EKSIKIGFIGL-GAMGKPMAINLLKE-GVTVYAFDLMEANVAAVV---AQGAQACENNQKVAAA--SDIIFTSLPNAGIV 74 (301) T ss_dssp --CCEEEEECC-CTTHHHHHHHHHHT-TCEEEEECSSHHHHHHHH---TTTCEECSSHHHHHHH--CSEEEECCSSHHHH T ss_pred CCCCEEEEEEH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHH---HCCCEECCCHHHHHHC--CCEEEEEECCHHHH T ss_conf 98898999802-78899999999978-992899779999999999---8499785899999845--87368850568899 Q ss_pred HHHHHH----HH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 889999----85-3995899805884688899999984017718940 Q gi|254781050|r 85 DAIIES----IE-AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 85 dai~Ea----~~-agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) ..+... .. ..-..++|-..-+...+.+++.+.++++|++.+- T Consensus 75 ~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ld 121 (301) T 3cky_A 75 ETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD 121 (301) T ss_dssp HHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99981750365525899289989999989999999999976992892 No 89 >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Probab=91.45 E-value=0.74 Score=24.40 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=76.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 7399988884377999999986269818-997658998868727745775314078503578863688621204567889 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) .||-+.|+ |.-|+--+++.++- |.+| |.-.+|.|-.+.. ..+.-+++|..|+.+. +|+-++++|.......+ T Consensus 22 mkIg~IGl-G~MG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~---~~ga~~~~s~~e~~~~--~d~vi~~l~~~~a~~~v 94 (310) T 3doj_A 22 MEVGFLGL-GIMGKAMSMNLLKN-GFKVTVWNRTLSKCDELV---EHGASVCESPAEVIKK--CKYTIAMLSDPCAALSV 94 (310) T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSGGGGHHHH---HTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHH T ss_pred CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHH---HCCCEECCCHHHHHHC--CCCEEEECCCCCCEEEE T ss_conf 87978716-88999999999978-993899869999999999---8699682899999845--88449840575302563 Q ss_pred HHHH----HC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9998----53-9958998058846888999999840177189406 Q gi|254781050|r 88 IESI----EA-EIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 88 ~Ea~----~a-gik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300) ..-. +. .-..+++.+.-......+++.+.++++|++.+-- T Consensus 95 ~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~lda 139 (310) T 3doj_A 95 VFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEG 139 (310) T ss_dssp HHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC T ss_pred ECCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 013201554235898899568763777899999998449769963 No 90 >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Probab=91.31 E-value=0.38 Score=26.24 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=72.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 3999888843779999999862698189-976589988687277457753140785035788636886212045678899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) ||-|.|. |.-|+--++...+- |-+|+ .-++|.|--... ..+..+.+|..|+.+. +|+-++++|-..+...+. T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~-G~~v~v~dr~~~~~~~l~---~~Ga~~~~s~~e~~~~--~d~v~~~l~~~~~~~~v~ 74 (296) T 2gf2_A 2 PVGFIGL-GNMGNPMAKNLMKH-GYPLIIYDVFPDACKEFQ---DAGEQVVSSPADVAEK--ADRIITMLPTSINAIEAY 74 (296) T ss_dssp CEEEECC-STTHHHHHHHHHHT-TCCEEEECSSTHHHHHHH---TTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHH T ss_pred CEEEEEH-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH---HCCCEECCCHHHHHHC--CCCEEEECCCCHHHHHHH T ss_conf 1999804-79899999999968-996999919999999999---8599672999999857--996688348846774210 Q ss_pred HHHH---CCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 9985---399--5899805884688899999984017718940 Q gi|254781050|r 89 ESIE---AEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 89 Ea~~---agi--k~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) .... ... ..++|-+.-.+..+.+++.+.++++|++.+= T Consensus 75 ~~~~~~~~~~~~g~~ivd~sT~~p~~~~~~~~~~~~~g~~~ld 117 (296) T 2gf2_A 75 SGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMD 117 (296) T ss_dssp HSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 3543311469999999989989999999999999983998996 No 91 >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.3A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Probab=91.11 E-value=0.8 Score=24.19 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=80.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEE-CCCCCCCCCCCCHHHHCCC-CCCCEEEEECCHHHHHH Q ss_conf 739998888437799999998626981899-76589988687-2774577531407850357-88636886212045678 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYW-TGGNVNVPVFTTVAEAKER-TAANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~-~g~~~~iPvy~sv~ea~~~-~~~D~avI~VP~~~v~d 85 (300) .++=+.|+ |..|.-.+.++.+- |-+|.. -.+|.|--... .+...++..++|++|.+.. ..+|.-++.||...+.+ T Consensus 6 ~~IGfIGL-G~MG~~mA~nL~~~-G~~V~v~drt~~k~~~l~~~~~~~~~~~~~s~~e~v~~l~~~~vIi~~v~~~~~v~ 83 (474) T 2iz1_A 6 ANFGVVGM-AVMGKNLALNVESR-GYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD 83 (474) T ss_dssp BSEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH T ss_pred CCEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHH T ss_conf 98789804-89899999999967-99179993999999999985566897527999999961799998999899858999 Q ss_pred HHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 8999985399--5899805884688899999984017718940685101 Q gi|254781050|r 86 AIIESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 86 ai~Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) .+.+-+-... ..++|-..-....+..+..+.++++|++.++.--.|- T Consensus 84 ~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~~gi~fldapVSGG 132 (474) T 2iz1_A 84 ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGG 132 (474) T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSH T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCC T ss_conf 9999998507799989844888879999999999864984632433456 No 92 >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.90A {Neisseria meningitidis MC58} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Probab=90.76 E-value=0.4 Score=26.07 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=65.6 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) |+.+.|. |+-|+--.+..+..+..+ +...++.+.-....-+..++-++++..++ + +.|+-++.|+|..+.+...+ T Consensus 2 kI~fIG~-G~mg~ai~~gl~~~~~~~-i~v~~r~~~~~~~l~~~~~v~~~~~~~~~-~--~~dvi~l~vkP~~~~~vl~~ 76 (263) T 1yqg_A 2 NVYFLGG-GNMAAAVAGGLVKQGGYR-IYIANRGAEKRERLEKELGVETSATLPEL-H--SDDVLILAVKPQDMEAACKN 76 (263) T ss_dssp EEEEECC-SHHHHHHHHHHHHHCSCE-EEEECSSHHHHHHHHHHTCCEEESSCCCC-C--TTSEEEECSCHHHHHHHHTT T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHCCCEECCCHHHH-C--CCCEEEEECCHHHHHHHHHH T ss_conf 8999944-299999999999689986-89974999999999997395772674564-0--46779982577888887787 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHC-CC-CEEEECCCCEEE Q ss_conf 985399589980588468889999998401-77-189406851013 Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEK-SS-SRLIGPNCPGIL 133 (300) Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~-~g-~riiGPNc~Gii 133 (300) - ...=+.+|-+..|++... |.++... .. +|++ ||.+--+ T Consensus 77 l-~~~~~~iIS~~AGi~~~~---l~~~~~~~~~ivR~m-Pn~~~~~ 117 (263) T 1yqg_A 77 I-RTNGALVLSVAAGLSVGT---LSRYLGGTRRIVRVM-PNTPGKI 117 (263) T ss_dssp C-CCTTCEEEECCTTCCHHH---HHHHTTSCCCEEEEE-CCGGGGG T ss_pred H-CCCCCEEEEECCCCCHHH---HHHHCCCCCEEEEEC-CCCHHHH T ss_conf 5-247767998079987778---998739986488717-9725788 No 93 >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Probab=90.68 E-value=0.37 Score=26.28 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=69.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 973999888843779999999862698189-9765899886872774577531407850357886368862120456788 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) +-||-|.|. |..|+-.++...+. |.+|. ...+|.|--... ..+.-+.+|..|+.+. .|+-+++||.+.+... T Consensus 9 ~m~Ig~IG~-G~mG~~ia~~L~~~-G~~V~v~~r~~~~~~~l~---~~G~~~~~s~~e~~~~--~d~Vi~~v~~~~~~~~ 81 (306) T 3l6d_A 9 EFDVSVIGL-GAMGTIMAQVLLKQ-GKRVAIWNRSPGKAAALV---AAGAHLCESVKAALSA--SPATIFVLLDNHATHE 81 (306) T ss_dssp SCSEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHH---HHTCEECSSHHHHHHH--SSEEEECCSSHHHHHH T ss_pred CCCEEEEEH-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH---HCCCEECCCHHHHHHC--CCEEEECCCCHHHHHH T ss_conf 995899857-99999999999977-996999959999999999---8699665999999847--9978960688999999 Q ss_pred HHH---HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 999---985399589980588468889999998401771894 Q gi|254781050|r 87 IIE---SIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 87 i~E---a~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +.. ....--..+++...-+.....+++.+.+++.|.+.+ T Consensus 82 vl~~~~~~~~~~g~~iid~st~~p~~~~~~~~~~~~~g~~~l 123 (306) T 3l6d_A 82 VLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306) T ss_dssp HHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEE T ss_pred HHHHHCCHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 987203033235664631687870466888866502682365 No 94 >1mb4_A Aspartate-semialdehyde dehydrogenase; enzyme, complex, oxidoreductase; HET: NDP; 1.84A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.1 PDB: 1mc4_A Probab=90.56 E-value=0.89 Score=23.87 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=76.5 Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCEEECCCCCCCCCCCCHH-HHCCCCCCCEEEEECCHHHHHH Q ss_conf 399988884377999999986---269818997658998868727745775314078-5035788636886212045678 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAIL---YCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVA-EAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~---y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~-ea~~~~~~D~avI~VP~~~v~d 85 (300) ||-|-|.||--|.--.+..++ .---++++-.+....|+...-.....++++... |..+ ++|+...++|.....+ T Consensus 2 kVaIvGAtGy~G~elirlL~~h~~hp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~--~vDvvF~Alph~~s~~ 79 (370) T 1mb4_A 2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYTEK 79 (370) T ss_dssp EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHC--CCCEEEECCCCCHHHH T ss_conf 79999972099999999998557989507999985455897625587200110247842750--5999999999841545 Q ss_pred HHHHHHHCCCCEEEE-ECCCC----------CHHHHHHHHHHHHCCCCEEEECCCCE Q ss_conf 899998539958998-05884----------68889999998401771894068510 Q gi|254781050|r 86 AIIESIEAEIPLIVC-ITEGI----------PVLDMVRVKARLEKSSSRLIGPNCPG 131 (300) Q Consensus 86 ai~Ea~~agik~ivi-iteGi----------p~~d~~~l~~~A~~~g~riiGPNc~G 131 (300) .+.+..++|.+.+|| .+..+ |+....++.+...+..-.+-.|||-- T Consensus 80 ~~~~~~~~g~~~~ViDls~dfR~~~~~~~~~~~~~~~e~~~~~~~~~~~IanPgC~~ 136 (370) T 1mb4_A 80 VYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTV 136 (370) T ss_dssp HHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCHHH T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHH T ss_conf 402456348618999685012554433435776445554233204755201688628 No 95 >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus aureus subsp} Probab=89.06 E-value=1.2 Score=23.13 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=54.2 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CC-------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 399988884377999999986269818997658-99-------8868727745775314078503578863688621204 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-KK-------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-gk-------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) ||+|-|.||..|+.-.++.++-++.+|.+.+.. .| +=+.+.++..+ | +++.+|.+ ++|..+...++. T Consensus 2 kIlVtGatG~iG~~l~~~Ll~~g~~~v~~~~R~~~~~~~~~~~~v~~~~~D~~d-~--~~l~~al~--g~d~V~~~~~~~ 76 (289) T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFN-Q--ESMVEAFK--GMDTVVFIPSII 76 (289) T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTC-H--HHHHHHTT--TCSEEEECCCCC T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHHCCCCEEEEEECCC-H--HHHHHHHC--CCCEEEEECCCC T ss_conf 499989887899999999996899879999789466613414997799973678-6--76555433--898899951787 Q ss_pred H--------HHHHHHHHHHCCCCEEEEECC Q ss_conf 5--------678899998539958998058 Q gi|254781050|r 82 G--------AGDAIIESIEAEIPLIVCITE 103 (300) Q Consensus 82 ~--------v~dai~Ea~~agik~iviite 103 (300) . ....+.-|.++|++.++.++. T Consensus 77 ~~~~~~~~~~~~v~~aa~~~gv~~~v~~S~ 106 (289) T 3e48_A 77 HPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289) T ss_dssp CSHHHHHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 740566667899999998667757999730 No 96 >3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} Probab=88.89 E-value=0.46 Score=25.73 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=38.1 Q ss_pred CC-CCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCE Q ss_conf 98-728899970-5872489999999986422675526899843015765532200112248888999999999988975 Q gi|254781050|r 204 EA-TESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGIC 281 (300) Q Consensus 204 p~-T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~ 281 (300) |+ ++..+|+.| ++-. -++..+.+...+....=+-+-+++-|+...... .+ ......+.-.+.+.+.+++ T Consensus 227 p~~~dg~ILfLEdv~e~-~~~idR~L~qL~~aG~f~~i~Gii~G~f~~~~~----~~----~~~~~~~~l~~~~~~~~iP 297 (336) T 3gjz_A 227 PCIQEGDILFIEDSSKD-AATIERSFSFLKINGVFDKVSGIILGKHEQFDD----CG----TNRKPYEILLEVLQNQRIP 297 (336) T ss_dssp CCCCTTCEEEEECCSCB-HHHHHHHHHHHHHTTHHHHCSEEEEECCTTCBC----TT----SCCCHHHHHHHHHTTCCCC T ss_pred CCCCCCCEEEEEECCCC-CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC----CC----CCCCHHHHHHHHHHCCCCC T ss_conf 76678828999827876-539999999999759864586899925766777----78----8738999999997348986 Q ss_pred ECC Q ss_conf 788 Q gi|254781050|r 282 IAP 284 (300) Q Consensus 282 v~~ 284 (300) ++. T Consensus 298 V~~ 300 (336) T 3gjz_A 298 LLA 300 (336) T ss_dssp EEE T ss_pred EEE T ss_conf 897 No 97 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=88.79 E-value=0.89 Score=23.89 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=55.2 Q ss_pred EEEEECCCEEEEECCCCHHHHHHH-HHHHHHCCC--CEEEEECCCCCCEEECCCCCCCCC--CCCHHHHCCCCCCCEEEE Q ss_conf 567717973999888843779999-999862698--189976589988687277457753--140785035788636886 Q gi|254781050|r 2 SILVDKNTKVLVQGLTGKAGTFHT-EQAILYCQT--QVVGGIHPKKGSTYWTGGNVNVPV--FTTVAEAKERTAANASVI 76 (300) Q Consensus 2 sil~~~~t~vivqGitg~~g~~~~-~~~~~y~gt--~ivagV~Pgkgg~~~~g~~~~iPv--y~sv~ea~~~~~~D~avI 76 (300) +|+++++-||||-|-=||| |+ .+.+..... .|. +.||-+|..-..+...+.. ++.+.+..++..+|+.++ T Consensus 15 ~~~~~~~mkvLviGsGgrE---hAia~~l~~s~~~~~v~--~~pgN~g~~~~~~~~~i~~~d~~~i~~~~~~~~iD~vvv 89 (451) T 2yrx_A 15 NLYFQSHMNVLVIGRGGRE---HAIAWKAAQSPLVGKLY--VAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIV 89 (451) T ss_dssp CCCCCSSEEEEEEECSHHH---HHHHHHHHTCTTEEEEE--EEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEE T ss_pred CCHHHCCCEEEEECCCHHH---HHHHHHHHHCCCCCEEE--EECCCHHHHHHCEEEECCCCCHHHHHHHHHHHCCCEEEE T ss_conf 2024129789998978899---99999997498989899--978987998517046248689999999999839999998 Q ss_pred ECCHHHHHHHHHHHHHCCCCE Q ss_conf 212045678899998539958 Q gi|254781050|r 77 YVPPSGAGDAIIESIEAEIPL 97 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~agik~ 97 (300) --..+.+...+..+-++|++. T Consensus 90 GpE~pL~~gl~D~l~~~gi~v 110 (451) T 2yrx_A 90 GPEAPLASGIVDRFMAEGLRI 110 (451) T ss_dssp CSHHHHHTTHHHHHHHTTCCE T ss_pred CCCHHHHHHHHHHHHHCCCCE T ss_conf 975788889999995069940 No 98 >2gz1_A Aspartate beta-semialdehyde dehydrogenase; aspartate pathway, oxidoreductase; HET: NAP; 1.80A {Streptococcus pneumoniae} SCOP: c.2.1.3 d.81.1.1 PDB: 2gyy_A* 2gz2_A* 2gz3_A* Probab=88.11 E-value=1.3 Score=22.73 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=82.4 Q ss_pred EEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 3999888843779999999862--69818997658998868727745775314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) ||-|-|.||--|.--.+....- -.-+|++-.+....|+.+.-...++++-+.-.+.. -++|+...+.|.....+.+ T Consensus 4 kVaIvGAtGy~G~ELlrlL~~H~~P~~ei~~l~S~~saGk~i~~~~~~l~~~~~~~~~~--~~~DvvF~alP~g~s~~~~ 81 (366) T 2gz1_A 4 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAF--EGVDIALFSAGSSTSAKYA 81 (366) T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTT--TTCSEEEECSCHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEECCCEEEEEECCHHHH--CCCCEEEECCCCCHHHHHH T ss_conf 89999974299999999997289996179999888768987558894335720784352--1499999889973344466 Q ss_pred HHHHHCCCCEEEEECCCCCHHHH-----HHHHHHH-HCCCCEEEECCCCEEECCCCHHCCEEC-CCCCCCCCEEEEEECC Q ss_conf 99985399589980588468889-----9999984-017718940685101355510002001-1235778679998054 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDM-----VRVKARL-EKSSSRLIGPNCPGILTPDSCKIGIMP-GSIFRKGSVGILSRSG 160 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~-----~~l~~~A-~~~g~riiGPNc~Gii~p~~~~lgi~p-~~~~~pG~VgivSqSG 160 (300) .++.++|++ ++-.++-|-..+. -++.... ....-.+..|||.=... .+.+.| ...+....+.+.+-++ T Consensus 82 ~~~~~~g~~-VIDlSadfRl~~dv~~~~p~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~ 156 (366) T 2gz1_A 82 PYAVKAGVV-VVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCSTIQM----MVALEPVRQKWGLDRIIVSTYQA 156 (366) T ss_dssp HHHHHTTCE-EEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCHHHHHH----HHHHHHHHHHHCCCEEEEEEEBC T ss_pred HHHCCCCCE-EEECCHHHCCCCCCEEEECCCCHHHHHCCCCCCCCCCHHHHHH----HHHHHHHHHHHCCCEEECCCCCC T ss_conf 776006969-9988543237898348732324455410024103785167887----77667667750864797045334 Q ss_pred CH Q ss_conf 14 Q gi|254781050|r 161 TL 162 (300) Q Consensus 161 ~l 162 (300) .- T Consensus 157 ~s 158 (366) T 2gz1_A 157 VS 158 (366) T ss_dssp GG T ss_pred CC T ss_conf 55 No 99 >1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A* Probab=87.74 E-value=0.6 Score=24.99 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=23.2 Q ss_pred CHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC Q ss_conf 99999999973998728899970587248999999998642267552689984301 Q gi|254781050|r 192 EFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKT 247 (300) Q Consensus 192 ~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~Grt 247 (300) +-.|+.+.+.+ .+.++|++..--+++.| .+.+.+++.++.... -|.++.+|+- T Consensus 635 tpee~a~aa~e-s~a~vv~ics~d~~y~~-~vp~l~~~Lk~ag~~-~i~VilgG~i 687 (727) T 1req_A 635 TPEETARQAVE-ADVHVVGVSSLAGGHLT-LVPALRKELDKLGRP-DILITVGGVI 687 (727) T ss_dssp CHHHHHHHHHH-TTCSEEEEEECSSCHHH-HHHHHHHHHHHTTCT-TSEEEEEESC T ss_pred CHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHHCCCC-CCEEEEECCC T ss_conf 99999999997-69999999178745588-999999999967998-8579980778 No 100 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Probab=87.18 E-value=1.5 Score=22.38 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=55.8 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC--CCEEECCCCCCCCCCCCHH--HHCCCCCCCEEEEECCHHH Q ss_conf 79739998888437799999998626981899765899--8868727745775314078--5035788636886212045 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK--GSTYWTGGNVNVPVFTTVA--EAKERTAANASVIYVPPSG 82 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk--gg~~~~g~~~~iPvy~sv~--ea~~~~~~D~avI~VP~~~ 82 (300) +.|+|...|..| .|........+. |.+|||.|.-.| -|+.++| +||+.+-+ +..+...-.++|.+..... T Consensus 51 ~~~~~~l~g~~~-~~~~~~~~~~~~-~~~via~~Dd~~~~~~~~~~g----~pv~s~~~~~~~~~~~~~~~~v~~~~~~~ 124 (409) T 2py6_A 51 NATRLVILGTKG-FGAHLMNVRHER-PCEVIAAVDDFRYHSGELYYG----LPIISTDRFTELATHDRDLVALNTCRYDG 124 (409) T ss_dssp GGCEEEEECSSS-THHHHHSCSSSC-SSEEEEEECTTTTTSCCEETT----EEEECHHHHHHHHHTCTTEEEEECCCSHH T ss_pred CCCEEEEECCCC-HHHHHHHHHHHC-CCEEEEEECCCCCCCCCEEEE----EEEECHHHHHHHHHCCCCEEEEECCCCHH T ss_conf 742299984872-689999998738-956999955765567874512----47744899998741379779997578544 Q ss_pred HHHHHHH-HHHCCCCEEE Q ss_conf 6788999-9853995899 Q gi|254781050|r 83 AGDAIIE-SIEAEIPLIV 99 (300) Q Consensus 83 v~dai~E-a~~agik~iv 99 (300) ...-... |.++|++.+. T Consensus 125 ~~~~~~~~~~~~~~~~~~ 142 (409) T 2py6_A 125 PKRFFDQICRTHGIPHLN 142 (409) T ss_dssp HHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHCCCCHHH T ss_conf 669999998755982232 No 101 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=87.00 E-value=1.5 Score=22.37 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=51.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCE--------EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 739998888437799999998626981899765899886--------872774577531407850357886368862120 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGST--------YWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~--------~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) =||+|-|.||..|+.-.+..++. |-+|++.+....... .+.. .++ -+++.++.+ ++|..+..+.+ T Consensus 22 MkIlI~GasG~iG~~lv~~Ll~~-g~~V~~l~R~~~k~~~~~~~~~~~~~~--~d~--~~~~~~a~~--~~d~vi~~~~~ 94 (236) T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEEQGPELRERGASDIVV--ANL--EEDFSHAFA--SIDAVVFAAGS 94 (236) T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHTTCSEEEE--CCT--TSCCGGGGT--TCSEEEECCCC T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCCCCCC--CCH--HHHHHHHCC--CCCHHHHCCCC T ss_conf 90899999888999999999978-598999988878813555235533113--430--333333124--54533311034 Q ss_pred HH--------------HHHHHHHHHHCCCCEEEEEC Q ss_conf 45--------------67889999853995899805 Q gi|254781050|r 81 SG--------------AGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 81 ~~--------------v~dai~Ea~~agik~iviit 102 (300) .. ....+..|.+++++.++.++ T Consensus 95 ~~~~~~~~~~~~~~~~~~~li~aa~~~~v~~~v~~s 130 (236) T 3e8x_A 95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130 (236) T ss_dssp CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEEC T ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEEE T ss_conf 677786521343123416788888755966899994 No 102 >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Probab=86.90 E-value=1.5 Score=22.43 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.4 Q ss_pred HHCCCCEEEECCC Q ss_conf 4017718940685 Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300) Q Consensus 117 A~~~g~riiGPNc 129 (300) +-...+|+..+++ T Consensus 113 al~~D~ria~~~a 125 (250) T 2a7k_A 113 ALMFDQRLMASTA 125 (250) T ss_dssp HTTSSEEEEETTC T ss_pred HHCCCCCCCCCCC T ss_conf 3224545234142 No 103 >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Probab=86.77 E-value=1.6 Score=22.24 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=78.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEE--CCCCCCCCCCCCHHHHCCC-CCCCEEEEECCHHHHHH Q ss_conf 39998888437799999998626981899-76589988687--2774577531407850357-88636886212045678 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYW--TGGNVNVPVFTTVAEAKER-TAANASVIYVPPSGAGD 85 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~--~g~~~~iPvy~sv~ea~~~-~~~D~avI~VP~~~v~d 85 (300) .|-+.|+ |..|.-.+.++.+- |-+|.. -.+|.|--... ......+..++++.|.++. ..+|.-++.||...+.+ T Consensus 4 nIG~IGL-G~MG~~mA~nL~~~-G~~V~vydrt~~k~~~l~~~~a~~~~~~~a~s~~e~~~~l~~~dvIi~~lp~~~~v~ 81 (482) T 2pgd_A 4 DIALIGL-AVMGQNLILNMNDH-GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (482) T ss_dssp SEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH T ss_pred CEEEEEE-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCHHHH T ss_conf 4899804-58899999999977-994899809999999999831653577455889999987169998999789828999 Q ss_pred HHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 899998539--95899805884688899999984017718940685101 Q gi|254781050|r 86 AIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 86 ai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) .+.+-+-.. -..++|-..-....+.+++.+.++++|++.++---.|- T Consensus 82 ~Vi~~l~~~l~~G~iiID~sT~~~~~s~~~~~~l~~~gi~fldapVSGG 130 (482) T 2pgd_A 82 NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG 130 (482) T ss_dssp HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCCCCC T ss_conf 9999999528999989967886178999999998724701523555787 No 104 >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Probab=86.50 E-value=1.7 Score=22.15 Aligned_cols=119 Identities=22% Similarity=0.150 Sum_probs=75.7 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCC-------CCEEECCCCCCCCCCCCHHHHCCC-CCCCEEEEECCH Q ss_conf 39998888437799999998626981899-765899-------886872774577531407850357-886368862120 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKK-------GSTYWTGGNVNVPVFTTVAEAKER-TAANASVIYVPP 80 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgk-------gg~~~~g~~~~iPvy~sv~ea~~~-~~~D~avI~VP~ 80 (300) +|=+.|+ |.-|.-.+.+..+- |-+|+. -.+|.| ++... ....+-++.++.+.+.. ..+|..++.||. T Consensus 3 kIG~IGL-G~MG~~mA~nL~~~-G~~V~v~dr~~~k~~~l~~~ga~~~--~~~~~~~~~~~~~~~~~l~~~~~Ii~~v~~ 78 (478) T 1pgj_A 3 DVGVVGL-GVMGANLALNIAEK-GFKVAVFNRTYSKSEEFMKANASAP--FAGNLKAFETMEAFAASLKKPRKALILVQA 78 (478) T ss_dssp SEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHTTTST--TGGGEEECSCHHHHHHHBCSSCEEEECCCC T ss_pred EEEEECH-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCCCC--CCCHHHHHCCHHHHHHHCCCCCEEEEECCC T ss_conf 6999766-88899999999967-9927999599999999997589655--674076751599999746899989998889 Q ss_pred HHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 45678899998539--95899805884688899999984017718940685101 Q gi|254781050|r 81 SGAGDAIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 81 ~~v~dai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) ..+.|.+.+.+-.. -..++|-..-....+.+++.+.++++|++.++---.|- T Consensus 79 g~~v~~vi~~l~~~l~~g~iiID~st~~~~~t~~~~~~l~~~gi~fldapVSGg 132 (478) T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG 132 (478) T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH T ss_pred CHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCC T ss_conf 867999999999737799866216777869999999998506970424535665 No 105 >2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A Probab=86.07 E-value=0.88 Score=23.91 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=48.0 Q ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCC Q ss_conf 95167640556744678999999999739987288999705872489999999986422675-52689984301576553 Q gi|254781050|r 175 LGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRK-KPIVGFVAGKTAPPGRT 253 (300) Q Consensus 175 ~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~-KPVva~~~GrtAp~g~~ 253 (300) .||--..+-|= .+-.|+.+...+ ...++|++-.--++..| -+.+.+++.++.... -||+ .+|.- |+ T Consensus 631 ~GfeV~~~~~f-----~TpeE~a~aA~e-~~a~vvgics~d~~h~~-lvp~l~~~Lk~~g~~~i~Vv--vgGvi-P~--- 697 (762) T 2xij_A 631 LGFDVDIGPLF-----QTPREVAQQAVD-ADVHAVGVSTLAAGHKT-LVPELIKELNSLGRPDILVM--CGGVI-PP--- 697 (762) T ss_dssp TTCEEEECCTT-----CCHHHHHHHHHH-TTCSEEEEEECSSCHHH-HHHHHHHHHHHTTCTTSEEE--EEESC-CG--- T ss_pred CCCEEEECCCC-----CCHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHHCCCCCCEEE--EECCC-CH--- T ss_conf 79028527877-----899999999997-69999999268765688-99999999996699986799--80778-87--- Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEECC--------CHHHHHHHHHHHHHC Q ss_conf 2200112248888999999999988975788--------989999999999843 Q gi|254781050|r 254 MGHAGAVISGGKGGAEDKINAMKEAGICIAP--------SPARIGRSLVELLGS 299 (300) Q Consensus 254 ~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~--------s~~el~~~l~~~l~~ 299 (300) .+. +.|+++||--+- .-.++.+.|.+.+.+ T Consensus 698 ------------~d~----~~l~~aGV~~if~pg~~i~~~~~~i~~~i~~~~~~ 735 (762) T 2xij_A 698 ------------QDY----EFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLEK 735 (762) T ss_dssp ------------GGH----HHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHHC T ss_pred ------------HHH----HHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf ------------889----99998698878399982999999999999999988 No 106 >3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444} Probab=86.00 E-value=1.8 Score=21.98 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=44.0 Q ss_pred HHHHHHH---CCCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH- Q ss_conf 9999997---3998728899970-5872489999999986422675526899843015765532200112248888999- Q gi|254781050|r 195 DVLELFL---ADEATESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE- 269 (300) Q Consensus 195 d~L~~~~---~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~- 269 (300) ++|..+. -.|+++-.+|+.| ++... ++..+.+...+....-+-+-+++-|+....... . ....-+.+ T Consensus 170 ~~l~~l~GTp~~p~~~g~ILflEdv~e~~-~~idR~L~qL~~~G~f~~i~Gii~G~f~~~~~~---~----~~~~~~~~~ 241 (274) T 3g23_A 170 MTLAMLCGTRLLPDLSGHVVMIEEVAEHH-YAVDRLLFHVTSCLADAGIAGLRLGRVSDVPEN---D----RPFGCSVEE 241 (274) T ss_dssp HHHHHHTTSTTSCCCTTCEEEEEEESCCH-HHHHHHHHHHHHHHTTTTCSEEEEEEEECCCSS---S----CCCSSCHHH T ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCC---C----CCCCCCHHH T ss_conf 65453328887788788389998278988-999999999987183320867999852258878---7----766706999 Q ss_pred HHHHHHHHCCCEECCC Q ss_conf 9999999889757889 Q gi|254781050|r 270 DKINAMKEAGICIAPS 285 (300) Q Consensus 270 ~k~~al~~aGv~v~~s 285 (300) .-.+.+.+.+++++.+ T Consensus 242 vl~~~~~~~~iPv~~~ 257 (274) T 3g23_A 242 MARHWCHRAGIAFLGT 257 (274) T ss_dssp HHHHHHHHHTCCEEEE T ss_pred HHHHHHHCCCCCEEEC T ss_conf 9999974079848989 No 107 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=85.40 E-value=1.9 Score=21.80 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=54.6 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------------CCEEECCCCCCCCCCCCHHHHCCC Q ss_conf 179739998888437799999998626981899765899-----------------886872774577531407850357 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK-----------------GSTYWTGGNVNVPVFTTVAEAKER 68 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk-----------------gg~~~~g~~~~iPvy~sv~ea~~~ 68 (300) ++.+||+|-|.||..|+.-++..++. |-.|.+-+.... |=+.+.++ +--..++.++.+. T Consensus 2 ~~k~kILVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~~~~~~~~~~~l~~~gv~v~~~D---~~d~~~l~~a~~~ 77 (308) T 1qyc_A 2 GSRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS---IDDHASLVEAVKN 77 (308) T ss_dssp CCCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCC---TTCHHHHHHHHHT T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEE---CCCHHHHHHHHHH T ss_conf 89997999898838999999999978-8969999888865556777777776503895899964---6543556887520 Q ss_pred CCCCEEEEECCHHHHH--HHHHH-HHHCCCCEEEEECC Q ss_conf 8863688621204567--88999-98539958998058 Q gi|254781050|r 69 TAANASVIYVPPSGAG--DAIIE-SIEAEIPLIVCITE 103 (300) Q Consensus 69 ~~~D~avI~VP~~~v~--dai~E-a~~agik~iviite 103 (300) +|..+-..+...+. ..+.+ |.++|++..+..++ T Consensus 78 --~d~v~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~s~ 113 (308) T 1qyc_A 78 --VDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSE 113 (308) T ss_dssp --CSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSC T ss_pred --CEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEEEC T ss_conf --415763256532334206889999739659996421 No 108 >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} Probab=83.95 E-value=0.99 Score=23.58 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=65.0 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) +|.|.|.+|+.|+..+....+. |-+|+ +.++..--.... ...++++. +..|+.+ ++|+-+++||+..+.++..+ T Consensus 13 ~i~iiG~~G~mG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~-~~~g~~~~-~~~~~~~--~~d~vi~~vp~~~~~~v~~~ 86 (286) T 3c24_A 13 TVAILGAGGKMGARITRKIHDS-AHHLA-AIEIAPEGRDRL-QGMGIPLT-DGDGWID--EADVVVLALPDNIIEKVAED 86 (286) T ss_dssp EEEEETTTSHHHHHHHHHHHHS-SSEEE-EECCSHHHHHHH-HHTTCCCC-CSSGGGG--TCSEEEECSCHHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHH-HHCCCEEC-CHHHHHH--CCCEEEEECCHHHHHHHHHH T ss_conf 9999898878999999999978-69699-993898999999-98799558-8999996--49999994788999999999 Q ss_pred HHHCC-CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC Q ss_conf 98539-9589980588468889999998401771894068510135 Q gi|254781050|r 90 SIEAE-IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300) Q Consensus 90 a~~ag-ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300) ....- -..+++-+.++...... ....... ..-..-||.|-... T Consensus 87 ~~~~l~~g~~vi~~ss~~~~~~~-~~~~~~~-~~~~~~p~~P~~g~ 130 (286) T 3c24_A 87 IVPRVRPGTIVLILDAAAPYAGV-MPERADI-TYFIGHPCHPPLFN 130 (286) T ss_dssp HGGGSCTTCEEEESCSHHHHHTC-SCCCTTS-EEEEEEECCSCSSC T ss_pred HHHHCCCCCEEEEECCCHHHHHH-HHHHCCC-CEEEEECCCCCCCC T ss_conf 99508999999993896688998-8631589-87999669973056 No 109 >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Probab=83.94 E-value=2.2 Score=21.39 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=5.2 Q ss_pred HHCCCCEEEECCC Q ss_conf 4017718940685 Q gi|254781050|r 117 LEKSSSRLIGPNC 129 (300) Q Consensus 117 A~~~g~riiGPNc 129 (300) +-....|+..+|+ T Consensus 116 a~~~D~ria~~~a 128 (260) T 1sg4_A 116 ALTCDYRILADNP 128 (260) T ss_dssp HTTSSEEEEECCT T ss_pred HCCCCEEEECCCC T ss_conf 1023323422223 No 110 >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Probab=83.67 E-value=2.2 Score=21.32 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 97399988884377999999986269818997658 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP 42 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P 42 (300) ++||+|-|.||..|+.-.+..++- |.+|++-+.. T Consensus 2 ~~KILVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~ 35 (307) T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRK 35 (307) T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECC T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECC T ss_conf 887999899848999999999968-8959999778 No 111 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=82.92 E-value=2.4 Score=21.13 Aligned_cols=85 Identities=8% Similarity=0.026 Sum_probs=48.0 Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH---HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH Q ss_conf 99765899886872774577531407850357886368862120---456788999985399589980588468889999 Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP---SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRV 113 (300) Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~---~~v~dai~Ea~~agik~iviiteGip~~d~~~l 113 (300) +.-|+...+..+|. .++.-++++.++.++++.++.-+- ..-...+..++..++..+++..-.-+. .... T Consensus 7 ~~~i~~~~~~~f~~------~v~~G~~~aa~~~g~~l~~~~~~~~d~~~q~~~l~~~i~~~~dgIii~~~d~~~--~~~~ 78 (305) T 3g1w_A 7 YMMITFQSGMDYWK------RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE--LTDT 78 (305) T ss_dssp EEEEESSTTSTHHH------HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT--THHH T ss_pred EEEEECCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHH T ss_conf 99995899983999------999999999997299899997999999999999999997698999997885676--8999 Q ss_pred HHHHHCCCCEEEECCC Q ss_conf 9984017718940685 Q gi|254781050|r 114 KARLEKSSSRLIGPNC 129 (300) Q Consensus 114 ~~~A~~~g~riiGPNc 129 (300) ++.+++.|+.++--|+ T Consensus 79 l~~~~~~gIpvv~~d~ 94 (305) T 3g1w_A 79 INKAVDAGIPIVLFDS 94 (305) T ss_dssp HHHHHHTTCCEEEESS T ss_pred HHHHHHCCCCEEEEEC T ss_conf 9999976995688730 No 112 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} Probab=82.81 E-value=0.7 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=17.0 Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 8679998054147899999997199 Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) -+|+++. .|.++..++..+...|. T Consensus 158 ~~v~viG-~G~~g~~~a~~l~~~g~ 181 (300) T 2rir_A 158 SQVAVLG-LGRTGMTIARTFAALGA 181 (300) T ss_dssp SEEEEEC-CSHHHHHHHHHHHHTTC T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC T ss_conf 8899988-87889999999998799 No 113 >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Probab=81.37 E-value=2.7 Score=20.77 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=56.5 Q ss_pred EEEECCCCHHHHHHHHHHHHHC-CCCEEEEEC-CCCC-------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 9998888437799999998626-981899765-8998-------868727745775314078503578863688621204 Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYC-QTQVVGGIH-PKKG-------STYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 11 vivqGitg~~g~~~~~~~~~y~-gt~ivagV~-Pgkg-------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) |+|-|-||..|+.-.+..++.+ |.+|++-+. |.|. =+.+.++ +--.+++.++.+ ++|..+...++. T Consensus 2 IlVtGaTG~iG~~vv~~L~~~~~g~~V~~~~R~~~~~~~l~~~~v~~~~~D---~~d~~~l~~a~~--g~d~v~~~~~~~ 76 (286) T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQAD---YGDEAALTSALQ--GVEKLLLISSSE 76 (286) T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECC---TTCHHHHHHHTT--TCSEEEECC--- T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCEEEEEC---CCCHHHHHHHHH--HCCEEEEECCCC T ss_conf 899998857999999999844999879999789687134420897899961---888666999996--376699951544 Q ss_pred H------HHHHHHHHHHCCCCEEEEECC Q ss_conf 5------678899998539958998058 Q gi|254781050|r 82 G------AGDAIIESIEAEIPLIVCITE 103 (300) Q Consensus 82 ~------v~dai~Ea~~agik~iviite 103 (300) . ....+..|.++|+|.+|..+. T Consensus 77 ~~~~~~~~~~~i~aa~~~gv~~~v~~S~ 104 (286) T 2zcu_A 77 VGQRAPQHRNVINAAKAAGVKFIAYTSL 104 (286) T ss_dssp -----CHHHHHHHHHHHHTCCEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 3301678999999999669747865312 No 114 >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; NP_940074.1, structural genomics, joint center for structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Probab=81.16 E-value=2.8 Score=20.72 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=49.4 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH--HHHHHHHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCCCCEEEEC Q ss_conf 7531407850357886368862120--45678899998539958998058846------888999999840177189406 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP--SGAGDAIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~--~~v~dai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~g~riiGP 127 (300) -|.|.......+..+. .++++|. ..-.+.+.++++.+.|.+++.+-+-| ..+..+|.++|+++++.||== T Consensus 112 ~P~y~~~~~~~~~~g~--~~~~v~~~~~~d~~~l~~~~~~~~k~i~~~nP~NPTG~~~s~e~~~~l~~~~~~~~~~ii~D 189 (377) T 3fdb_A 112 TPAYPPFFHLLSATQR--EGIFIDATGGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVD 189 (377) T ss_dssp ESCCTHHHHHHHHHTC--CEEEEECTTSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCCCHHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 7872067888874375--36752258887999999747568759998788898773034888888887776378699985 Q ss_pred CC Q ss_conf 85 Q gi|254781050|r 128 NC 129 (300) Q Consensus 128 Nc 129 (300) .+ T Consensus 190 e~ 191 (377) T 3fdb_A 190 EI 191 (377) T ss_dssp CT T ss_pred CC T ss_conf 44 No 115 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=80.90 E-value=2.8 Score=20.67 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=60.8 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCC-C-CCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 3999888843779999999862698189976589988687277457-7-5314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVN-V-PVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~-i-Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) ||.+.|. |.-|+.-++...+. |.+ |.++++.+.-.... ...+ + ...+. .|+.+ ++|+-+++||+..+.+.+ T Consensus 2 kI~iIG~-G~mG~sla~~L~~~-g~~-V~~~d~~~~~~~~a-~~~~~~~~~~~~-~~~~~--~aD~Iil~vP~~~~~~v~ 74 (279) T 2f1k_A 2 KIGVVGL-GLIGASLAGDLRRR-GHY-LIGVSRQQSTCEKA-VERQLVDEAGQD-LSLLQ--TAKIIFLCTPIQLILPTL 74 (279) T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSCHHHHHHH-HHTTSCSEEESC-GGGGT--TCSEEEECSCHHHHHHHH T ss_pred EEEEEEE-CHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHH-HHCCCCCCCCCC-HHHHH--CCCEEEECCCCCHHCCCC T ss_conf 8999903-99999999999968-897-99998999999999-985997701786-88861--567432058630100121 Q ss_pred HHHHHC-CCCEEEEECCCCCHHHHHHHHH Q ss_conf 999853-9958998058846888999999 Q gi|254781050|r 88 IESIEA-EIPLIVCITEGIPVLDMVRVKA 115 (300) Q Consensus 88 ~Ea~~a-gik~iviiteGip~~d~~~l~~ 115 (300) .+.... +-..+|+-+..+...-...+.+ T Consensus 75 ~~l~~~l~~~~iv~D~sSvk~~~~~~~~~ 103 (279) T 2f1k_A 75 EKLIPHLSPTAIVTDVASVKTAIAEPASQ 103 (279) T ss_dssp HHHGGGSCTTCEEEECCSCCHHHHHHHHH T ss_pred CCHHHHCCCCCEEECCCCCCHHHHHHHHH T ss_conf 11011024321221147776188888887 No 116 >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A Probab=80.67 E-value=2.9 Score=20.62 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=64.0 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE---EECCCCCCEEECC------CCCCCCCCCCHHHHCC-CCCCCEEE Q ss_conf 179739998888437799999998626981899---7658998868727------7457753140785035-78863688 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVG---GIHPKKGSTYWTG------GNVNVPVFTTVAEAKE-RTAANASV 75 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~iva---gV~Pgkgg~~~~g------~~~~iPvy~sv~ea~~-~~~~D~av 75 (300) |+--||.|-|.||--|..-.+...++-.-.|.. --+.+..|+++.. ...++++ ..+.+..+ ..++|+++ T Consensus 2 ~~m~kVAIvGATG~VG~ell~lL~~hp~f~i~~l~~~aS~rSaGk~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~vDiaf 80 (337) T 3dr3_A 2 NAMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPL-QPMSDISEFSPGVDVVF 80 (337) T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBE-EEESSGGGTCTTCSEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCE-EECCHHHHHCCCCCEEE T ss_conf 97509999993349999999999769997048987344667679697895921026567602-30630877345788788 Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 6212045678899998539958998058846888 Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLD 109 (300) Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip~~d 109 (300) .+.|.....+-+.++.++|.. ++=-|.-|-..| T Consensus 81 ~a~~~~vS~~~ap~~~~~g~~-VIDnSs~fRm~d 113 (337) T 3dr3_A 81 LATAHEVSHDLAPQFLEAGCV-VFDLSGAFRVND 113 (337) T ss_dssp ECSCHHHHHHHHHHHHHTTCE-EEECSSTTSSSC T ss_pred ECCCCHHHHHHHHHHHHCCCE-EEECCHHHHHCC T ss_conf 637776789999999863987-985443222167 No 117 >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehydrogenase, reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Probab=80.12 E-value=3 Score=20.51 Aligned_cols=195 Identities=13% Similarity=0.044 Sum_probs=94.0 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CC----------CCEEECCCCCCCCCCCCHHHHCCCCCCCEE Q ss_conf 1797399988884377999999986269818997658-99----------886872774577531407850357886368 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-KK----------GSTYWTGGNVNVPVFTTVAEAKERTAANAS 74 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-gk----------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~a 74 (300) +++.+|+|-|.||..|+.-.+..++. |-+|.+-+.. .+ +-+.+.++..+ |. .+++++. .++|.. T Consensus 3 ~~kktIlVtGaTG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~~~~l~~~~gv~~~~gD~~d-~~-~~~~~~~--~g~~~v 77 (352) T 1xgk_A 3 QQKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLN-NV-PLMDTLF--EGAHLA 77 (352) T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTT-CH-HHHHHHH--TTCSEE T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHCCCCCCCEEEEEECCC-CH-HHHHHHH--CCCCEE T ss_conf 99998999899718999999999958-9959999778530012340114898899975899-58-8999987--588589 Q ss_pred EEECCHHH------HHHHHHHHHHCCCCEEEEECCCCC-----------HHHH-HHHHHHHHCCCC--EEEECCC----- Q ss_conf 86212045------678899998539958998058846-----------8889-999998401771--8940685----- Q gi|254781050|r 75 VIYVPPSG------AGDAIIESIEAEIPLIVCITEGIP-----------VLDM-VRVKARLEKSSS--RLIGPNC----- 129 (300) Q Consensus 75 vI~VP~~~------v~dai~Ea~~agik~iviiteGip-----------~~d~-~~l~~~A~~~g~--riiGPNc----- 129 (300) +...++.. ....+..|.++|++..+++++... ..+. .+..++.+..++ .++-|.. T Consensus 78 ~~~~~~~~~~~~~~~~~~~~aa~~~g~~~~~~~Ss~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (352) T 1xgk_A 78 FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNF 157 (352) T ss_dssp EECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEEEEEECEEGGGC T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC T ss_conf 97467211123467899999999809960999940223456777555304577899999998548987999654752243 Q ss_pred CEEECCCCH----HCCE--ECCCCCCCCCEEEEEECCCHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 101355510----0020--011235778679998054147899999997---1995167640556744678999999999 Q gi|254781050|r 130 PGILTPDSC----KIGI--MPGSIFRKGSVGILSRSGTLTYEAVFQTSQ---EGLGQSTAVGIGGDPVKGTEFIDVLELF 200 (300) Q Consensus 130 ~Gii~p~~~----~lgi--~p~~~~~pG~VgivSqSG~l~~e~~~~~~~---~g~G~S~~VsiG~D~~~G~~~~d~L~~~ 200 (300) .+...|... ..+. ........+.+..++-..-++..+...+.. .-.|....++ ++. .++.|+.+.| T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~g~~~~~~--~~~---~t~~ei~~~~ 232 (352) T 1xgk_A 158 TSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT--FET---LSPVQVCAAF 232 (352) T ss_dssp BSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC--SEE---ECHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHCCCEEEEEC--CCC---CCHHHHHHHH T ss_conf 22343112333222562256513689863022523999999999998578030199799956--998---6899999999 Q ss_pred HCCCCCCEEE Q ss_conf 7399872889 Q gi|254781050|r 201 LADEATESIV 210 (300) Q Consensus 201 ~~Dp~T~~Iv 210 (300) .+=-..++.. T Consensus 233 ~~~~G~~~~~ 242 (352) T 1xgk_A 233 SRALNRRVTY 242 (352) T ss_dssp HHHHTSCEEE T ss_pred HHHHCCCCCE T ss_conf 9998898737 No 118 >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8} Probab=79.70 E-value=3.1 Score=20.42 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=60.4 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC--C----CCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 797399988884377999999986269818997658998868727--7----4577531407850357886368862120 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTG--G----NVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g--~----~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) +.-||-|-|.||--|..-.+...++---++..--+....|+.+.. + ..++. +.+. |.. .++|+++.+.|. T Consensus 3 ~K~~VaIvGATG~vG~ell~lL~~hP~~el~~laS~rsaGk~i~~~~~~l~~~~~~~-~~~~-~~~--~~~Divf~alp~ 78 (345) T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPP-EKL--EPADILVLALPH 78 (345) T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCG-GGC--CCCSEEEECCCT T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCE-ECCH-HHC--CCCCEEEECCCC T ss_conf 998899989151999999999981999679999826879984889593435866632-1586-681--347789991589 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 456788999985399589980588468 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~ 107 (300) ....+.+.++.++|.. +|=.|.-|-. T Consensus 79 ~~S~~~~~~~~~~g~~-VID~Ss~fR~ 104 (345) T 2ozp_A 79 GVFAREFDRYSALAPV-LVDLSADFRL 104 (345) T ss_dssp THHHHTHHHHHTTCSE-EEECSSTTSC T ss_pred CHHHEECHHHHCCCCE-EEECCCCEEC T ss_conf 7000111314325857-8617866250 No 119 >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics, NPPSFA; 2.70A {Thermus thermophilus HB8} Probab=79.50 E-value=3.1 Score=20.38 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=64.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 3999888843779999999862--69818997658998868727745775314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) ||-|-|.||--|.--.+..... -.-+++.-.+....|+.+.-....+++.+ +.|+. -++|+...+.|.....+.+ T Consensus 2 kVaIvGAsGy~G~ELirLL~~~~HP~~el~~~~S~~~aG~~i~~~~~~l~~~~-~~~~~--~~~Dvvf~alp~~~s~~~~ 78 (331) T 2yv3_A 2 RVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEP-LPEGP--LPVDLVLASAGGGISRAKA 78 (331) T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEE-CCSSC--CCCSEEEECSHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEECCCEEEEEE-CCCCC--CCCCEEEECCCCCCHHHHH T ss_conf 89999983199999999985579597899999898779933357897778888-95001--2467899316863035667 Q ss_pred HHHHHCCCCEEEEECCCCCH Q ss_conf 99985399589980588468 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~ 107 (300) .+..++|++ ++-.+..+.. T Consensus 79 ~~~~~~g~~-ViDls~d~R~ 97 (331) T 2yv3_A 79 LVWAEGGAL-VVDNSSAWRY 97 (331) T ss_dssp HHHHHTTCE-EEECSSSSTT T ss_pred HHHHHCCCE-EEECCCCCCC T ss_conf 999974986-9977744456 No 120 >1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A Probab=79.00 E-value=1.4 Score=22.71 Aligned_cols=73 Identities=10% Similarity=-0.058 Sum_probs=41.5 Q ss_pred CCCC-CEEEEEEE-CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCC Q ss_conf 9987-28899970-5872489999999986422675526899843015765532200112248888999-9999999889 Q gi|254781050|r 203 DEAT-ESIVMVGE-IGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAE-DKINAMKEAG 279 (300) Q Consensus 203 Dp~T-~~Ivl~gE-iGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~-~k~~al~~aG 279 (300) ++++ +-.+|+.| ++.. -++..+.+...+....-+-+-+++-|+....... ....+.+ .-...+.+.+ T Consensus 207 ~~~~~~g~ILflEdv~e~-~~~idR~L~~L~~aG~f~~i~Giv~G~f~~~~~~---------~~~~~~~~il~~~~~~~~ 276 (311) T 1zl0_A 207 GLHAPAGSILVLEDVGEP-YYRLERSLWQLLESIDARQLGAICLGSFTDCPRK---------EVAHSLERIFGEYAAAIE 276 (311) T ss_dssp CCCCCTTCEEEEEEESCC-HHHHHHHHHHHHHHTTGGGCSEEEEEEEETCCCT---------TCSSCHHHHHHHHHHHTT T ss_pred CCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC---------CCCHHHHHHHHHHHHHCC T ss_conf 788778818999828987-9999999999997086435757999406779887---------611529999999885479 Q ss_pred CEECCC Q ss_conf 757889 Q gi|254781050|r 280 ICIAPS 285 (300) Q Consensus 280 v~v~~s 285 (300) +++..+ T Consensus 277 iPv~~~ 282 (311) T 1zl0_A 277 VPLYHH 282 (311) T ss_dssp CCEEEC T ss_pred CCEEEC T ss_conf 838989 No 121 >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Probab=78.95 E-value=3.3 Score=20.27 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=70.2 Q ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEE-CC-HHHHHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 6981899765899886872774577531407850357886368862-12-045678899998539958998058846888 Q gi|254781050|r 32 CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIY-VP-PSGAGDAIIESIEAEIPLIVCITEGIPVLD 109 (300) Q Consensus 32 ~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~-VP-~~~v~dai~Ea~~agik~iviiteGip~~d 109 (300) +|..||+-+.||.-+.. -.+--.|..+..+.++.++++..+- ++ .......+++.++.|..+++. -|+...| T Consensus 3 ~~~~vVa~l~~G~i~D~----sfn~~~~~G~~~~~~~~gi~~~~~e~~~~~~~~~~~i~~~a~~g~dlIi~--~g~~~~~ 76 (296) T 2hqb_A 3 GGGGMVGLLVEDTIDDQ----GWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFG--HGHAFAE 76 (296) T ss_dssp ---CEEEEECCCC--------CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEE--CSTHHHH T ss_pred CCCEEEEEEECCCCCCH----HHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCHH T ss_conf 76518999976999860----48999999999999986986999957998899999999999879999998--2742226 Q ss_pred HHHHHHHHHCC-CCEEE-------ECCCCEEECC---CCHHCCEECCCCCCCCCEEEEEEC Q ss_conf 99999984017-71894-------0685101355---510002001123577867999805 Q gi|254781050|r 110 MVRVKARLEKS-SSRLI-------GPNCPGILTP---DSCKIGIMPGSIFRKGSVGILSRS 159 (300) Q Consensus 110 ~~~l~~~A~~~-g~rii-------GPNc~Gii~p---~~~~lgi~p~~~~~pG~VgivSqS 159 (300) .+.+.|+++ +++.+ +||-..+.-- .....|.+.+..-+.|.||+|.-- T Consensus 77 --~~~~vA~~~Pd~~F~~~d~~~~~~Nv~~~~f~~~e~~yLaG~~Aa~~tkt~kvG~vgg~ 135 (296) T 2hqb_A 77 --YFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAF 135 (296) T ss_dssp --HHHTTTTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESC T ss_pred --HHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCHHCCHHHHHHHHHHCCCCCCCEECCC T ss_conf --99999998899889994265457864699953012001899999861678840146052 No 122 >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Probab=78.66 E-value=3.2 Score=20.33 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=11.2 Q ss_pred HHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999973998728899970 Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300) Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300) .+.++.+++|+++++|++-|+ T Consensus 37 ~~~l~~~~~d~~v~~vVltg~ 57 (275) T 1dci_A 37 VECFQKISKDSDCRAVVVSGA 57 (275) T ss_dssp HHHHHHHHTCTTCCEEEEEES T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999975899679999678 No 123 >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Probab=78.58 E-value=3.4 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=14.2 Q ss_pred HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 9999999973998728899970 Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.++++.+++|++.++|++-++ T Consensus 31 l~~~l~~~~~d~~v~~vvi~g~ 52 (253) T 1uiy_A 31 LLQALDDLEADPGVRAVVLTGR 52 (253) T ss_dssp HHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999973999659999788 No 124 >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural genomics; HET: NDP; 1.80A {Thermus thermophilus HB8} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Probab=78.19 E-value=3.4 Score=20.13 Aligned_cols=110 Identities=14% Similarity=0.023 Sum_probs=67.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 73999888843779999999862698189976589988687277457753140785035788636886212045678899 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) .||=+.|+ |..|+--+++..+- |..+|.-.+|.|--.... ....+. .+ .|+.. .+|..++++|.......+. T Consensus 2 ~kIgfIGl-G~MG~~mA~~L~~~-g~~~v~nr~~~k~~~~~~--~~~~~~-~~-~e~~~--~~d~vi~~~~~~~~~~~~~ 73 (289) T 2cvz_A 2 EKVAFIGL-GAMGYPMAGHLARR-FPTLVWNRTFEKALRHQE--EFGSEA-VP-LERVA--EARVIFTCLPTTREVYEVA 73 (289) T ss_dssp CCEEEECC-STTHHHHHHHHHTT-SCEEEECSSTHHHHHHHH--HHCCEE-CC-GGGGG--GCSEEEECCSSHHHHHHHH T ss_pred CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHH--HCCCCC-CC-HHHHH--CCCEEEECCCCCCEEEEHH T ss_conf 88999751-88889999999948-987999899999999999--717646-87-99984--5887885067641322132 Q ss_pred HHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 998539--95899805884688899999984017718940 Q gi|254781050|r 89 ESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 89 Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) +.+-.+ -..++|...-+...+.+++.+.++++|.+.|- T Consensus 74 ~~~~~~~~~g~~iId~sT~~p~~~~~~~~~~~~~g~~~ld 113 (289) T 2cvz_A 74 EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113 (289) T ss_dssp HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE T ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEC T ss_conf 4688752689847757888999999999999977990882 No 125 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Probab=77.38 E-value=3.5 Score=20.06 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=65.3 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE Q ss_conf 75314078503578863688621204------56788999985399589980588------4688899999984017718 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300) -|.|....+..+.. ...++.+|.. .-++.+++++....+.+++.+-+ .+..+..++.+.|+++++. T Consensus 121 ~P~y~~~~~~~~~~--~~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ 198 (388) T 1j32_A 121 APFWVSYPEMVKLA--EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLW 198 (388) T ss_dssp SSCCTHHHHHHHHT--TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred CCCCHHHHHHHHHC--CCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEE T ss_conf 89838799999985--9989997256444668899999973788982999889989987348899999999630027876 Q ss_pred EEECCCCEEEC-------------CCC-HHC--CEECCCCCC-CC-CEEEEEECCCHHHHHHH Q ss_conf 94068510135-------------551-000--200112357-78-67999805414789999 Q gi|254781050|r 124 LIGPNCPGILT-------------PDS-CKI--GIMPGSIFR-KG-SVGILSRSGTLTYEAVF 168 (300) Q Consensus 124 iiGPNc~Gii~-------------p~~-~~l--gi~p~~~~~-pG-~VgivSqSG~l~~e~~~ 168 (300) ||=-.+-.-+. |+. .++ -...++.|. || ++|.+.-+-.+...+.. T Consensus 199 vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~ 261 (388) T 1j32_A 199 VLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATK 261 (388) T ss_dssp EEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHH T ss_pred EECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHCHHHHHEEEEECHHHHHHHHH T ss_conf 622341000036899987888858776784899977566525648572789988999999999 No 126 >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Probab=77.29 E-value=3.6 Score=19.97 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=69.8 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHH Q ss_conf 39998888437799999998626981899765899886872774577531407850357886368862120456788999 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIE 89 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~E 89 (300) ||-+.|+ |..|+-.+++..+- |-+|+. .+..+.-.... ...+.-+-+|..|+.+. .|+-+..+|+..+.+.+.+ T Consensus 2 kIg~IGl-G~MG~~mA~~L~~~-G~~V~~-~~~~~~~~~~~-~~~~~~~~~s~~e~~~~--advii~~v~~~~a~~~~~~ 75 (264) T 1i36_A 2 RVGFIGF-GEVAQTLASRLRSR-GVEVVT-SLEGRSPSTIE-RARTVGVTETSEEDVYS--CPVVISAVTPGVALGAARR 75 (264) T ss_dssp EEEEESC-SHHHHHHHHHHHHT-TCEEEE-CCTTCCHHHHH-HHHHHTCEECCHHHHHT--SSEEEECSCGGGHHHHHHH T ss_pred EEEEEEH-HHHHHHHHHHHHHC-CCEEEE-ECCCCCHHHHH-HHCCCCEECCHHHHHHH--CCCEEEEECCCHHHHHHHH T ss_conf 7999855-89999999999988-996999-78980453799-98499743888999740--5807998336315889986 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 98539958998058846888999999840177 Q gi|254781050|r 90 SIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 90 a~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) ....- +.+++-..-+.....+++.+.+++.+ T Consensus 76 ~~~~~-~~i~vd~sT~~p~~~~~~~~~~~~~~ 106 (264) T 1i36_A 76 AGRHV-RGIYVDINNISPETVRMASSLIEKGG 106 (264) T ss_dssp HHTTC-CSEEEECSCCCHHHHHHHHHHCSSSE T ss_pred HCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC T ss_conf 22566-34896079899889999999872387 No 127 >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Probab=76.68 E-value=3.8 Score=19.86 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=3.6 Q ss_pred CCCEEEEEEE Q ss_conf 5526899843 Q gi|254781050|r 236 KKPIVGFVAG 245 (300) Q Consensus 236 ~KPVva~~~G 245 (300) +||||+.+-| T Consensus 112 ~kPvIaav~G 121 (280) T 1pjh_A 112 SKVLICCLNG 121 (280) T ss_dssp CSEEEEEECS T ss_pred CCCEEEEECC T ss_conf 9998999778 No 128 >3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Probab=76.57 E-value=3.8 Score=19.84 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=53.5 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH--------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCC Q ss_conf 775314078503578863688621204--------56788999985399589980588------4688899999984017 Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS--------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKS 120 (300) Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~--------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~ 120 (300) .-|.|..-.++.+..+. -++.||-. .-.+.+.++++..+|.+++.+-+ ++..+..+|.++|+++ T Consensus 199 ~~P~y~~y~~~~~~~g~--~~v~v~~~~~~~~~~~~d~~~L~~~~~~~~k~i~i~nP~NPTG~~~s~e~l~~i~~~~~~~ 276 (533) T 3f6t_A 199 NEPIFTPYLRIPELKDY--ELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKN 276 (533) T ss_dssp ESSCCHHHHTSGGGGGS--EEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 68986889999998699--8999837777456987899999972899985899808979715437999999999999865 Q ss_pred -CCEEEECCCCEEECC Q ss_conf -718940685101355 Q gi|254781050|r 121 -SSRLIGPNCPGILTP 135 (300) Q Consensus 121 -g~riiGPNc~Gii~p 135 (300) ++.||==.+-+-+.+ T Consensus 277 ~~l~IIsDevY~~~~~ 292 (533) T 3f6t_A 277 PKLMIISDEVYGAFVP 292 (533) T ss_dssp TTCEEEEECTTGGGST T ss_pred CCEEEEECCCCCCCCC T ss_conf 9979996676432111 No 129 >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Probab=76.47 E-value=3.1 Score=20.40 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=63.5 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH------HHH Q ss_conf 99988884377999999986269818997658998868727745775314078503578863688621204------567 Q gi|254781050|r 11 VLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS------GAG 84 (300) Q Consensus 11 vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~ 84 (300) ++..| +.++..+.-+++...+- ++||. ... +.-|.|..-.+..+-.+.++-.+.++.. .-. T Consensus 169 ~iT~G--~~~Al~~if~~l~~~~L-----l~pGD--~Vl----v~~P~y~~y~~~~~l~g~~~~~v~~~~~~~~~~~~~~ 235 (546) T 2zy4_A 169 FAVEG--GTAAMAYIFESLKLNGL-----LKAGD--KVA----IGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPD 235 (546) T ss_dssp EEEEH--HHHHHHHHHHHHHHTTS-----SCTTC--EEE----EEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCH T ss_pred EEECC--HHHHHHHHHHHHHHHCC-----CCCCC--EEE----ECCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCH T ss_conf 99368--79999999999999517-----18899--899----9289848799999981984799984058555889999 Q ss_pred HHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCC--CCEEEECCCCE Q ss_conf 88999985399589980588------4688899999984017--71894068510 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKS--SSRLIGPNCPG 131 (300) Q Consensus 85 dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~--g~riiGPNc~G 131 (300) +.+.++.+..+|.+++.+-+ ++..+..+|.++|+++ ++.||==..-+ T Consensus 236 ~~l~~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~l~~~~~~~~~~l~II~DEvY~ 290 (546) T 2zy4_A 236 SELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG 290 (546) T ss_dssp HHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC T ss_conf 9999728999978998399896042379999999997630247875997076444 No 130 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} Probab=76.21 E-value=2.3 Score=21.20 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=15.2 Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 8679998054147899999997199 Q gi|254781050|r 151 GSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 151 G~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) -++.++. .|..+..++..+...|. T Consensus 156 ~~v~i~G-~G~~g~~~~~~~~~~g~ 179 (293) T 3d4o_A 156 ANVAVLG-LGRVGMSVARKFAALGA 179 (293) T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC T ss_conf 7899988-88899999999997699 No 131 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=76.06 E-value=3.9 Score=19.75 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=100.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC--HHHHHHHHHHHH Q ss_conf 88843779999999862698189976589988-687277457753140785035788636886212--045678899998 Q gi|254781050|r 15 GLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS-TYWTGGNVNVPVFTTVAEAKERTAANASVIYVP--PSGAGDAIIESI 91 (300) Q Consensus 15 Gitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg-~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP--~~~v~dai~Ea~ 91 (300) |-||-.-...++. +....|+.++-+.|.... ..+. -.+...+.++.++.+.++.+.... +....+.+.... T Consensus 1 ~~~GY~Pn~~Ar~-L~~~~s~~Igvi~~~~~~~~~f~-----~~l~~gi~~~~~~~g~~l~l~~~~~~~~~~~~~l~~~~ 74 (296) T 3brq_A 1 GHSGYRPNLLARN-LSAKSTQTLGLVVTNTLYHGIYF-----SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL 74 (296) T ss_dssp -------------------CCEEEEEECGGGCC--CH-----HHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHH-HHCCCCCEEEEEECCCCCCCHHH-----HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 9899875999999-75289997999958866468699-----99999999999985999999968999799999999999 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC------CEEECCCCHHCCEE-CCCCCCCC--CEEEEEECCCH Q ss_conf 53995899805884688899999984017718940685------10135551000200-11235778--67999805414 Q gi|254781050|r 92 EAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC------PGILTPDSCKIGIM-PGSIFRKG--SVGILSRSGTL 162 (300) Q Consensus 92 ~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc------~Gii~p~~~~lgi~-p~~~~~pG--~VgivSqSG~l 162 (300) +.++..++++...... + ++.+.+++.++.++--+. .-.+..+....+.. -....+.| ++++++-.... T Consensus 75 ~~~~dgiIi~~~~~~~-~--~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~ 151 (296) T 3brq_A 75 DLRCDAIMIYPRFLSV-D--EIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDS 151 (296) T ss_dssp HTTCSEEEEECSSSCH-H--HHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTC T ss_pred HCCCCEEEECCCCCCH-H--HHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 7098737752666775-8--999999964998899961247788988996736778888999876324503999468777 Q ss_pred HHH------HHHHHHHCCCCEEE-EEECCCCCCCCCCHHHH-HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC Q ss_conf 789------99999971995167-64055674467899999-99997399872889997058724899999999864226 Q gi|254781050|r 163 TYE------AVFQTSQEGLGQST-AVGIGGDPVKGTEFIDV-LELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRG 234 (300) Q Consensus 163 ~~e------~~~~~~~~g~G~S~-~VsiG~D~~~G~~~~d~-L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~ 234 (300) .+. ....+.+.++-... .+..+.+. . .+..++ .+++..+|+-++|+.. ....+..+++...... T Consensus 152 ~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~ai~~~------~d~~A~g~~~~l~~~g 223 (296) T 3brq_A 152 PTSIERLAGYKDALAQHGIALNEKLIANGKWT-P-ASGAEGVEMLLERGAKFSALVAS------NDDMAIGAMKALHERG 223 (296) T ss_dssp HHHHHHHHHHHHHHHTTTCCCCGGGEECCCSS-H-HHHHHHHHHHHTC--CCSEEEES------SHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCC-C-CHHHHHHHHHHHCCCCCCEEEEC------CHHHHHHHHHHHHHCC T ss_conf 50577888999999985998761024315545-2-20789999998568887458856------8599999999999739 Q ss_pred CCCC Q ss_conf 7552 Q gi|254781050|r 235 RKKP 238 (300) Q Consensus 235 ~~KP 238 (300) .+-| T Consensus 224 ~~iP 227 (296) T 3brq_A 224 VAVP 227 (296) T ss_dssp CCTT T ss_pred CCCC T ss_conf 9898 No 132 >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Probab=76.00 E-value=4 Score=19.74 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=52.3 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCC Q ss_conf 775314078503578863688621204------56788999985399589980588------468889999998401771 Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSS 122 (300) Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~ 122 (300) .-|.|.+..++.+..+ .-++.+|-. .-++.+.+++....+.+++.+-+ ++..+..++.+.|+++++ T Consensus 117 ~~P~y~~~~~~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~ 194 (389) T 1gd9_A 117 PTPAFVSYAPAVILAG--GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL 194 (389) T ss_dssp EESCCTTHHHHHHHHT--CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 1898789999999869--98999742266688779999997376798389986998971635899999999999998695 Q ss_pred EEEECCCCEE Q ss_conf 8940685101 Q gi|254781050|r 123 RLIGPNCPGI 132 (300) Q Consensus 123 riiGPNc~Gi 132 (300) .||==.+-+- T Consensus 195 ~ii~De~Y~~ 204 (389) T 1gd9_A 195 IVISDEVYEH 204 (389) T ss_dssp EEEEECTTTT T ss_pred EEEEECCCHH T ss_conf 9999576444 No 133 >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Probab=75.48 E-value=4.1 Score=19.66 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=55.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHC Q ss_conf 75314078503578863688621204----------56788999985399589980588------468889999998401 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEK 119 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~ 119 (300) -|.|.+...+.... ..-+++||.. .-++.+++++....+.+++.+-+ .+..+..++.++|++ T Consensus 133 ~P~y~~~~~~~~~~--g~~~v~v~~~~~~~~~~~~~~d~~~l~~~i~~~~~~i~l~~P~NPtG~~~~~~~~~~i~~~a~~ 210 (407) T 3nra_A 133 QPDYFANRKLVEFF--EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAAR 210 (407) T ss_dssp ESCCTHHHHHHHHT--TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH--CCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 89856799999981--8945320102244665567989999997357698599995898987765207776446777622 Q ss_pred CCCEEEECCCCEE Q ss_conf 7718940685101 Q gi|254781050|r 120 SSSRLIGPNCPGI 132 (300) Q Consensus 120 ~g~riiGPNc~Gi 132 (300) +++.+|==.+..- T Consensus 211 ~~~~vi~De~y~~ 223 (407) T 3nra_A 211 YGATVIADQLYSR 223 (407) T ss_dssp HTCEEEEECTTTT T ss_pred CEEEEEEHHHHHH T ss_conf 6068885145554 No 134 >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Probab=75.27 E-value=4.1 Score=19.62 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=13.1 Q ss_pred HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 9999999973998728899970 Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.+.++.+.+||+.++|++-++ T Consensus 36 l~~~l~~~~~d~~v~~vVl~g~ 57 (263) T 3lke_A 36 LLEAIRAGNNETSIHSIILQSK 57 (263) T ss_dssp HHHHHHHHHHCSSCCEEEEEES T ss_pred HHHHHHHHHCCCCCEEEEEECC T ss_conf 9999999850999579999638 No 135 >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Bacillus cereus atcc 14579} Probab=74.98 E-value=3.3 Score=20.22 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=62.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC--C-CCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 739998888437799999998626--9-8189976589988687277457753140785035788636886212045678 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYC--Q-TQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~--g-t~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) -|+.+.|. |+-|+--..-.+..+ . .+|+. .++.+.--...-+..++-++.+..|+++. +|+-++.|||+.+.+ T Consensus 3 kkI~fIG~-G~mg~ai~~gl~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dviilavkP~~~~~ 78 (247) T 3gt0_A 3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIIC-SDLNTANLKNASEKYGLTTTTDNNEVAKN--ADILILSIKPDLYAS 78 (247) T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEE-ECSCHHHHHHHHHHHCCEECSCHHHHHHH--CSEEEECSCTTTHHH T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-ECCCHHHHHHHHHHCCCEEECCHHHHHHC--CCCEEEECCCCHHHH T ss_conf 82999857-699999999999779999676999-79899999999997397465663888733--884588448714544 Q ss_pred HHHHHHH--CCCCEEEEECCCCCHHHHHHH Q ss_conf 8999985--399589980588468889999 Q gi|254781050|r 86 AIIESIE--AEIPLIVCITEGIPVLDMVRV 113 (300) Q Consensus 86 ai~Ea~~--agik~iviiteGip~~d~~~l 113 (300) .+.|... ..=+.++-+..|++..+..+. T Consensus 79 vl~~~~~~~~~~~~iiSi~agi~~~~l~~~ 108 (247) T 3gt0_A 79 IINEIKEIIKNDAIIVTIAAGKSIESTENA 108 (247) T ss_dssp HC---CCSSCTTCEEEECSCCSCHHHHHHH T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH T ss_conf 457663013577425651357447889999 No 136 >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Probab=74.83 E-value=1.6 Score=22.18 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=7.5 Q ss_pred HHHHHHHCCCCEEEECCCCEE Q ss_conf 999984017718940685101 Q gi|254781050|r 112 RVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 112 ~l~~~A~~~g~riiGPNc~Gi 132 (300) ...++||++++-.+| =|+|+ T Consensus 375 ~Ai~yARen~IPfLG-ICLGm 394 (550) T 1vco_A 375 RAAQYARERKIPYLG-ICLGL 394 (550) T ss_dssp HHHHHHHHTTCCEEE-ETHHH T ss_pred HHHHHHHHCCCCCCC-CCCCH T ss_conf 999989873998420-01224 No 137 >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3 Probab=74.79 E-value=4.2 Score=19.54 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=13.5 Q ss_pred HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 9999999973998728899970 Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.+.++.+.+||+.++|++-|+ T Consensus 42 l~~~l~~~~~d~~vr~vvl~g~ 63 (264) T 1wz8_A 42 LARVWRDLEAVEGVRAVLLRGE 63 (264) T ss_dssp HHHHHHHHTTCTTCSEEEEEEG T ss_pred HHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999866899869999789 No 138 >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Probab=74.70 E-value=4.3 Score=19.53 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=8.5 Q ss_pred HHHHHHHCCCCCCEEEEEEE Q ss_conf 99999973998728899970 Q gi|254781050|r 195 DVLELFLADEATESIVMVGE 214 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.|+.+++||+.++|++-++ T Consensus 60 ~al~~~~~d~~vrvvvl~g~ 79 (286) T 3myb_A 60 EAFGTLAEDESVRAVVLAAS 79 (286) T ss_dssp HHHHHHHTCTTCCEEEEEEC T ss_pred HHHHHHHHCCCCEEEEEECC T ss_conf 99999974899569999569 No 139 >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} Probab=74.66 E-value=4.3 Score=19.53 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=10.0 Q ss_pred CCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 7718940685101355510002001 Q gi|254781050|r 120 SSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 120 ~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ..+|+.-+|+. +--| ..++|+.| T Consensus 164 ~D~riate~a~-f~~p-e~~iGl~P 186 (407) T 3ju1_A 164 ASHKVVTETSR-IAMP-EVTIGLYP 186 (407) T ss_dssp CSEEEECTTCE-EECG-GGGGTCCS T ss_pred CCCCCCCCCCE-EECH-HHCEEECC T ss_conf 56465589879-8323-41454279 No 140 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Probab=74.64 E-value=4.3 Score=19.52 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=53.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCC-------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 973999888843779999999862698189976-5899-------88687277457753140785035788636886212 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI-HPKK-------GSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV-~Pgk-------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) ..||+|-|.||..|+.-.+..++. |.+|.+.+ +|.| +-+.+.++..+ .+++.++.+ ++|+-+..+. T Consensus 3 ~kkIlV~GatG~iG~~l~~~ll~~-g~~V~~~~R~~~~~~~~~~~~~~~v~~D~~d---~~~l~~a~~--~~d~Vi~~~g 76 (206) T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---AADVDKTVA--GQDAVIVLLG 76 (206) T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSSSCCCSEEEESCTTS---HHHHHHHHT--TCSEEEECCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHCCCCCCCCCEEEEECCCH---HHHHHHHHC--CCCEEEEEEC T ss_conf 888999999868999999999978-6989999848365654335661589602433---678999976--9979999713 Q ss_pred H-------HHHH---HHHHH-HHHCCCCEEEEEC Q ss_conf 0-------4567---88999-9853995899805 Q gi|254781050|r 80 P-------SGAG---DAIIE-SIEAEIPLIVCIT 102 (300) Q Consensus 80 ~-------~~v~---dai~E-a~~agik~iviit 102 (300) + .... ..+.+ |.+++++.++.++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~v~r~i~~s 110 (206) T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110 (206) T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 6885010124588899999999985999899986 No 141 >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Probab=74.62 E-value=4.3 Score=19.52 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=54.2 Q ss_pred HHCCCCCCCEEEEECCHH--HHHHHHHHHHHC--CCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEE--ECCCCEEE Q ss_conf 503578863688621204--567889999853--995899805----88468889999998401771894--06851013 Q gi|254781050|r 64 EAKERTAANASVIYVPPS--GAGDAIIESIEA--EIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLI--GPNCPGIL 133 (300) Q Consensus 64 ea~~~~~~D~avI~VP~~--~v~dai~Ea~~a--gik~iviit----eGip~~d~~~l~~~A~~~g~rii--GPNc~Gii 133 (300) +..+..++++-.+-++.. .-++.+.++++. .++.+.+.. .|+ ..|..++.++++++|+.++ +=-+.|.+ T Consensus 100 ~~a~~~G~~v~~i~~~~~~~id~~~le~al~~~~~~k~V~l~~~~t~tG~-~~pi~~i~~l~~~~g~~lvvDavss~g~~ 178 (392) T 2z9v_A 100 YWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGT-INPIDAIGALVSAHGAYLIVDAVSSFGGM 178 (392) T ss_dssp HHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTE-ECCHHHHHHHHHHTTCEEEEECTTTBTTB T ss_pred HHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCE-ECCHHHHHHHHHHCCCEEEEEECCCCCEE T ss_conf 99997198479951688887899999999715999539999777766744-43678875567753973899603434325 Q ss_pred --CCCCHHCCEEC--C-C-CCCCCCEEEEEECCCH Q ss_conf --55510002001--1-2-3577867999805414 Q gi|254781050|r 134 --TPDSCKIGIMP--G-S-IFRKGSVGILSRSGTL 162 (300) Q Consensus 134 --~p~~~~lgi~p--~-~-~~~pG~VgivSqSG~l 162 (300) ...+..+-+.- + + +..|..++++-.|... T Consensus 179 pi~~~~~~~d~~~~s~~K~l~~p~G~g~v~~~~~~ 213 (392) T 2z9v_A 179 KTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERA 213 (392) T ss_dssp SCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHH T ss_pred EEEECCCCCCEEECCCCCCCCCCCCEEEEEECHHH T ss_conf 88641457416844675501458974799988999 No 142 >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating 1; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Probab=74.22 E-value=4.4 Score=19.46 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=79.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEE-EECCCCCCEEE--CCCCCCCCCCCCHHHHCCC-CCCCEEEEECCHHHHHH Q ss_conf 39998888437799999998626981899-76589988687--2774577531407850357-88636886212045678 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVG-GIHPKKGSTYW--TGGNVNVPVFTTVAEAKER-TAANASVIYVPPSGAGD 85 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~iva-gV~Pgkgg~~~--~g~~~~iPvy~sv~ea~~~-~~~D~avI~VP~~~v~d 85 (300) ++=+.|+ |..|.--+.++.+- |-+|.. -.+|.|--... ......+.-+.++.+.++. ..+|.-++.||.....+ T Consensus 12 ~IG~IGL-G~MG~~mA~nL~~~-G~~V~vydrs~~k~~~l~~~~~~~~~~~ga~s~~~~v~~l~~~d~Iil~vp~g~~v~ 89 (497) T 2p4q_A 12 DFGLIGL-AVMGQNLILNAADH-GFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497) T ss_dssp SEEEECC-SHHHHHHHHHHHHT-TCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH T ss_pred CEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHH T ss_conf 8789826-58899999999977-994899949999999999703643466465758889998468998999759948999 Q ss_pred HHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE Q ss_conf 8999985399--58998058846888999999840177189406851013 Q gi|254781050|r 86 AIIESIEAEI--PLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL 133 (300) Q Consensus 86 ai~Ea~~agi--k~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii 133 (300) .+.+.+.... ..++|-+.-....+.+++.+.++++|+..+++--.|-. T Consensus 90 ~Vi~~L~~~l~~g~IIID~sts~~~~s~~~~~~l~~kgi~flda~VSGG~ 139 (497) T 2p4q_A 90 ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGE 139 (497) T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCH T ss_conf 99999986377999899579997689999999987449767344345774 No 143 >3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A Probab=73.93 E-value=3.6 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=13.3 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 84017718940685101355510002001 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ++--..+|+..+++. +-.| ..++|+.| T Consensus 109 la~~cD~ria~~~a~-f~~p-e~~~Gl~p 135 (254) T 3gow_A 109 LALWGDLRLAAVGAS-FTTA-FVRIGLVP 135 (254) T ss_dssp HHTTCSEEEEETTCE-EECC-GGGGTCCC T ss_pred HHHCCCEEEECCCCE-EECH-HCCCCCCC T ss_conf 775255158738878-9861-10757687 No 144 >2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.6A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Probab=73.75 E-value=4.5 Score=19.38 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=34.5 Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCC Q ss_conf 755268998430157655322001122488889999999999889757889899999999998439 Q gi|254781050|r 235 RKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 (300) Q Consensus 235 ~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~l 300 (300) .+|||+++-.. +.++.....+.+..+.++++++|..+.++++|.+| T Consensus 130 ~~kpvi~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~l~~l 175 (176) T 2iz6_A 130 AKKPVVLLGTQ--------------------PEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAKL 175 (176) T ss_dssp TTCCEEEESCC--------------------HHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC- T ss_pred HCCEEEEECCC--------------------CCCHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHC T ss_conf 49908998887--------------------55354408342586699899999999999999862 No 145 >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosynthesis; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Probab=73.40 E-value=4.6 Score=19.33 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=74.2 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCEEE-CCCCCCCCCCCCHHHHCCCCCCCEEEEECCH Q ss_conf 1797399988884377999999986269----8189976589988687-2774577531407850357886368862120 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQ----TQVVGGIHPKKGSTYW-TGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~g----t~ivagV~Pgkgg~~~-~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300) .++=|+-+.|. |+-|+--.+-.+.- | .+|.. .++.+.-... .-+..++-++.+-.|++++ .|+-+++|+| T Consensus 20 ~~~MkIgfIG~-GnMG~Ai~~gLl~~-g~~~~~~I~v-~~r~~~~~~~~~~~~~gv~~~~~~~e~v~~--aDvI~LaVkP 94 (322) T 2izz_A 20 FQSMSVGFIGA-GQLAFALAKGFTAA-GVLAAHKIMA-SSPDMDLATVSALRKMGVKLTPHNKETVQH--SDVLFLAVKP 94 (322) T ss_dssp --CCCEEEESC-SHHHHHHHHHHHHT-TSSCGGGEEE-ECSCTTSHHHHHHHHHTCEEESCHHHHHHH--CSEEEECSCG T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC-CCCCCCEEEE-ECCCHHHHHHHHHHHCCCEEECCHHHHHHC--CCEEEEHHHH T ss_conf 47888999895-29999999999977-9999666999-799852999999885693882787999732--9978853378 Q ss_pred HHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHH-CCCCEEEECCCCEE Q ss_conf 4567889999853--9958998058846888999999840-17718940685101 Q gi|254781050|r 81 SGAGDAIIESIEA--EIPLIVCITEGIPVLDMVRVKARLE-KSSSRLIGPNCPGI 132 (300) Q Consensus 81 ~~v~dai~Ea~~a--gik~iviiteGip~~d~~~l~~~A~-~~g~riiGPNc~Gi 132 (300) ..+.++..+.... .=+.+|-+..|++..+..++..... ...+--.=||.+-- T Consensus 95 ~~~~~vl~~i~~~l~~~~lVISvaAGi~l~~l~~~l~~~~~~~~ivR~MPN~~~~ 149 (322) T 2izz_A 95 HIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVV 149 (322) T ss_dssp GGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGG T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHH T ss_conf 8760454543100256506774467863899999834568876068715731444 No 146 >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A Probab=73.22 E-value=3.8 Score=19.84 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=29.9 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE-ECCC--CCCCCCCHHHHHHHHH Q ss_conf 78679998054147899999997199516764-0556--7446789999999997 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV-GIGG--DPVKGTEFIDVLELFL 201 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V-siG~--D~~~G~~~~d~L~~~~ 201 (300) .|.--.|+=+|..++.++..+.+.|.=+-.+- +-|. |+ .|.|..++++++. T Consensus 229 ~g~~vaIQGfGnVG~~~A~~L~e~GakvvavsD~~G~iy~~-~Gld~~~l~~~~~ 282 (449) T 1bgv_A 229 VGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDP-EGITTEEKINYML 282 (449) T ss_dssp TTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECT-TCSCSHHHHHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEC-CCCCHHHHHHHHH T ss_conf 89889997668289999999986699259985588359941-7877688999999 No 147 >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Probab=72.68 E-value=2.9 Score=20.60 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=19.7 Q ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 73998728899970587248999999998642267552689984 Q gi|254781050|r 201 LADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVA 244 (300) Q Consensus 201 ~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~ 244 (300) ..+|+-++|.+.|. |..-.+.-++.-. . ..+-|++.++- T Consensus 431 ~~~p~~~vv~v~GD--gsf~~~~~eL~ta-~--~~~~pi~ivv~ 469 (563) T 2vk8_A 431 EIDPKKRVILFIGD--GSLQLTVQEISTM-I--RWGLKPYLFVL 469 (563) T ss_dssp HHCTTCCEEEEEEH--HHHHHHGGGHHHH-H--HTTCCCEEEEE T ss_pred HHCCCCCEEEEECC--HHHHCCHHHHHHH-H--HHCCCCEEEEE T ss_conf 71999836999775--3664039999999-9--82969289999 No 148 >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Probab=72.48 E-value=4.8 Score=19.19 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=22.7 Q ss_pred HHHHHHHCCCCEEEEECCCCC------HHHHHHHHHHHHCCCCEEEECCC Q ss_conf 899998539958998058846------88899999984017718940685 Q gi|254781050|r 86 AIIESIEAEIPLIVCITEGIP------VLDMVRVKARLEKSSSRLIGPNC 129 (300) Q Consensus 86 ai~Ea~~agik~iviiteGip------~~d~~~l~~~A~~~g~riiGPNc 129 (300) ....+....++.+++.+-+-| ..+..++.+.+++++..++=--. T Consensus 155 ~l~~~~~~~~~~i~l~nP~NPtG~~~~~~~l~~i~~~~~~~~~~ii~d~~ 204 (386) T 1u08_A 155 EFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEV 204 (386) T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECT T ss_pred HHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99851245856999849999888443456766788763256348873031 No 149 >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Probab=72.32 E-value=4.9 Score=19.17 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=20.2 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 78679998054147899999997199 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) .|.--.|+=+|..++.++..+.+.|. T Consensus 251 ~gk~vaIqGfGnVG~~aa~~L~e~Ga 276 (470) T 2bma_A 251 EKQTAVVSGSGNVALYCVQKLLHLNV 276 (470) T ss_dssp GGCEEEEECSSHHHHHHHHHHHHTTC T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC T ss_conf 67889997777368999999997497 No 150 >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Probab=72.29 E-value=3.2 Score=20.35 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=50.3 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----------------HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHH Q ss_conf 75314078503578863688621204----------------56788999985399589980588------468889999 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----------------GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRV 113 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----------------~v~dai~Ea~~agik~iviiteG------ip~~d~~~l 113 (300) -|.|.+.....+. ...-++.||-. .-++.+.+++....+.+++.+-+ .+..+..++ T Consensus 149 ~P~y~~y~~~~~~--~g~~~v~vp~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~iii~~p~NPtG~~~s~~~~~~l 226 (447) T 3b46_A 149 EPFFDQYIPNIEL--CGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTL 226 (447) T ss_dssp ESCCTTHHHHHHH--TTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHH T ss_pred CCCCHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHH T ss_conf 8775769999998--49889993477532233212322356789999997443686599988998888776889999999 Q ss_pred HHHHHCCCCEEEECCC Q ss_conf 9984017718940685 Q gi|254781050|r 114 KARLEKSSSRLIGPNC 129 (300) Q Consensus 114 ~~~A~~~g~riiGPNc 129 (300) .+.|+++++.+|==.+ T Consensus 227 ~~~a~~~~~~ii~De~ 242 (447) T 3b46_A 227 GNICVKHNVVIISDEV 242 (447) T ss_dssp HHHHHHTTCEEEEECT T ss_pred HHHHHCCCEEEECCCC T ss_conf 8654206468740542 No 151 >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Probab=72.20 E-value=4.9 Score=19.15 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=11.9 Q ss_pred HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 9999999973998728899970 Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.+.|+.+++|++.++|++-++ T Consensus 38 l~~~l~~~~~d~~v~~vVl~g~ 59 (255) T 3p5m_A 38 LSVHIRDAEADESVRAVLLTGA 59 (255) T ss_dssp HHHHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999974999279999666 No 152 >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Probab=72.05 E-value=4.9 Score=19.13 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=18.1 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 78679998054147899999997199 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) .|.--.|.=.|..++.++..+.+.|. T Consensus 172 ~g~~vaIQGfGnVG~~~a~~L~~~Ga 197 (364) T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGA 197 (364) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC T ss_conf 78889998567168999999997799 No 153 >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A Probab=71.86 E-value=4.7 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=12.8 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 84017718940685101355510002001 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +|--...|+..||+. +--| ..++|+.| T Consensus 113 lal~~D~ria~~~a~-f~~p-e~~~Gl~p 139 (258) T 2pbp_A 113 LALSCDLIVASSAAE-FGFP-EVNLGVMP 139 (258) T ss_dssp HHHTSSEEEEETTCE-EECG-GGGGTCCC T ss_pred HHHHCCEEEECCCCE-EECC-CCCCCCCC T ss_conf 986278799879978-9873-11568798 No 154 >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus HB8} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Probab=71.36 E-value=4.7 Score=19.29 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=49.9 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH------HHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE Q ss_conf 753140785035788636886212045------6788999985399589980588------4688899999984017718 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG------AGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~------v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300) -|.|....++.+. ....++.+|... -++...+++....+.+++.+-+ ++..+..++.++|+++++. T Consensus 122 ~P~y~~~~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPTG~~~s~~~l~~l~~~a~~~~~~ 199 (385) T 1b5p_A 122 SPYWVSYPEMVRF--AGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFY 199 (385) T ss_dssp ESCCTHHHHHHHH--TTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred CCCCHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 8984779999998--29968999624211457899999973788976999899989967228999999999999985938 Q ss_pred EEECCCCEEE Q ss_conf 9406851013 Q gi|254781050|r 124 LIGPNCPGIL 133 (300) Q Consensus 124 iiGPNc~Gii 133 (300) ||==.+-+-+ T Consensus 200 ii~De~y~~l 209 (385) T 1b5p_A 200 LVSDEIYEHL 209 (385) T ss_dssp EEEECTTTTC T ss_pred EEEECCHHHH T ss_conf 9996754753 No 155 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=71.27 E-value=5.1 Score=19.02 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=74.3 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-------------CCCEEECCCCCCCCCCCCHHH--HCCCCCCCEEEEEC---C Q ss_conf 43779999999862698189976589-------------988687277457753140785--03578863688621---2 Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPK-------------KGSTYWTGGNVNVPVFTTVAE--AKERTAANASVIYV---P 79 (300) Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pg-------------kgg~~~~g~~~~iPvy~sv~e--a~~~~~~D~avI~V---P 79 (300) |+.-..--+...+|-|++-+-.|+-| +-|.++. +|.|.-++- ++.. ..+-.+|+ | T Consensus 62 G~~v~~fE~~~a~~~g~k~~v~~~SGT~AL~lal~al~i~~gdeVi-----~p~~t~~at~~ai~~--~G~~pvf~Dv~~ 134 (399) T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVI-----VPSHTYIASWLAVSA--TGATPVPVEPHE 134 (399) T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEE-----EESSSCTHHHHHHHH--TTCEEEEECBCS T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEE-----ECCCCHHHHHHHHHH--HCCCEEEEECCC T ss_conf 9779999999999978496999658899999999985999949999-----799340735779986--148718962333 Q ss_pred HH--HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCCEEECC-CCHHCC---------EECCC Q ss_conf 04--567889999853995899805-884688899999984017718940685101355-510002---------00112 Q gi|254781050|r 80 PS--GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCPGILTP-DSCKIG---------IMPGS 146 (300) Q Consensus 80 ~~--~v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p-~~~~lg---------i~p~~ 146 (300) -. .-++.+.+.+...+++++++- -|.| -|+.++.++|+++++.||==+|..+-.- ...++| +.|.+ T Consensus 135 ~~~~id~~~l~~~i~~~tkaIi~vh~~G~~-~d~~~i~~i~k~~~i~vIEDaAqa~Ga~~~gk~~G~~gd~~~fSF~~~K 213 (399) T 2oga_A 135 DHPTLDPLLVEKAITPRTRALLPVHLYGHP-ADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGK 213 (399) T ss_dssp SSSSBCHHHHHHHCCTTEEEECCBCGGGCC-CCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTS T ss_pred CCCCCCHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCEEEEECCCHHCCCCCCEECCCCCCEEEEECCCCC T ss_conf 113588899998727665089852788980-0369999999973986999773121573463305776630225125885 Q ss_pred CCCC-CCEEEE-EECCCHHHHHHHHHHHCC Q ss_conf 3577-867999-805414789999999719 Q gi|254781050|r 147 IFRK-GSVGIL-SRSGTLTYEAVFQTSQEG 174 (300) Q Consensus 147 ~~~p-G~Vgiv-SqSG~l~~e~~~~~~~~g 174 (300) .... |.=|+| +.+-.+ ++-+..++..| T Consensus 214 ~l~~~GeGG~i~t~d~~l-~~~~~~lr~~G 242 (399) T 2oga_A 214 NLGCFGDGGAVVTGDPEL-AERLRMLRNYG 242 (399) T ss_dssp SSCCSSCCEEEEESCHHH-HHHHHHHHBTT T ss_pred CEEECCCCCEEECCCHHH-HHHHHHHHHCC T ss_conf 021328971786599999-99999999649 No 156 >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Probab=71.23 E-value=4.8 Score=19.22 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=7.8 Q ss_pred HHHHHHHCCCCCCEEEEEEE Q ss_conf 99999973998728899970 Q gi|254781050|r 195 DVLELFLADEATESIVMVGE 214 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.|+.+++|+++++|++-++ T Consensus 44 ~~l~~~~~d~~v~~vvl~g~ 63 (263) T 3moy_A 44 DAARDFDADLEIGAIVVTGS 63 (263) T ss_dssp HHHHHHHHCTTCCEEEEECC T ss_pred HHHHHHHHCCCEEEEEEECC T ss_conf 99998732898169998678 No 157 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=70.65 E-value=5.3 Score=18.93 Aligned_cols=70 Identities=6% Similarity=-0.086 Sum_probs=37.5 Q ss_pred CCCCHHHHCCCCCCCEEEEECCHHH--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 3140785035788636886212045--67889999853995899805884688899999984017718940685 Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPSG--AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300) Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~~--v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc 129 (300) +.+.++++.++.+.++.+....... -...+..+++.++..+++..-.-.. ...+.+.|++.|+.++--|+ T Consensus 20 ~~~~~~~~a~~~G~~~~~~~~~~~~~~q~~~i~~li~~~vDgIii~~~~~~~--~~~~i~~a~~~gipvv~~d~ 91 (306) T 2vk2_A 20 ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG--WEPVLKEAKDAEIPVFLLDR 91 (306) T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS--CHHHHHHHHHTTCCEEEESS T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHHHHHCCCEEEEECC T ss_conf 9999999999869989999599999999999999997698999990788211--59999999976981999814 No 158 >2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5 Probab=70.39 E-value=4.7 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=5.4 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 54147899999997 Q gi|254781050|r 159 SGTLTYEAVFQTSQ 172 (300) Q Consensus 159 SG~l~~e~~~~~~~ 172 (300) ||.+++|++.-+.+ T Consensus 200 SGR~s~emV~Ka~~ 213 (268) T 2pw9_A 200 TGRLTSDMVLKCAR 213 (268) T ss_dssp SSCBCHHHHHHHHH T ss_pred CCCCCHHHHHHHHH T ss_conf 89660999999998 No 159 >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 1zpd_A* Probab=70.09 E-value=5.4 Score=18.86 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=45.7 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC-CCCCEEEEECCCCCCC Q ss_conf 678999999999739987288999705872489999999986422675526899843015765-5322001122488889 Q gi|254781050|r 189 KGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPG-RTMGHAGAVISGGKGG 267 (300) Q Consensus 189 ~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g-~~~gHaGAi~~~~~g~ 267 (300) +|....-.+-.-..+|+.++|.+.|- |..-.+.-++.-+ . ..+.|++.++.=-.. -+ .++-|-+-.-....-+ T Consensus 415 ~G~~l~~aigaala~~~~~vv~i~GD--gsf~~~~~~L~ta-~--~~~~pl~iiV~NN~g-~gi~~~~~~~~~~~~~~~d 488 (568) T 2wvg_A 415 IGWSVPAAFGYAVGAPERRNILMVGD--GSFQLTAQEVAQM-V--RLKLPVIIFLINNYG-YTIEVMIHDGPYNNIKNWD 488 (568) T ss_dssp TTTHHHHHHHHHHHCTTSEEEEEEEH--HHHHHHGGGHHHH-H--HTTCCCEEEEEECSS-CHHHHTTSCCGGGCCCCCC T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECC--HHHHCCHHHHHHH-H--HHCCCEEEEEEECCC-CHHHHHHHHCCCCCCCCCC T ss_conf 77632899999987898848899656--0653479999999-9--839692999996993-6578634215677889998 Q ss_pred HHHHHHHHHH------CCC--EECCCHHHHHHHHHHHHH Q ss_conf 9999999998------897--578898999999999984 Q gi|254781050|r 268 AEDKINAMKE------AGI--CIAPSPARIGRSLVELLG 298 (300) Q Consensus 268 a~~k~~al~~------aGv--~v~~s~~el~~~l~~~l~ 298 (300) ....-++|.- .|+ .++++++||...|++.+. T Consensus 489 f~~l~~~~~~~~~~~~~g~~~~~v~~~~el~~al~~a~~ 527 (568) T 2wvg_A 489 YAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALA 527 (568) T ss_dssp HHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHH T ss_conf 889998708631467569559996889999999999986 No 160 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=69.07 E-value=5.7 Score=18.72 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=40.3 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCC-----C-EEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 7973999888843779999999862698189976-58998-----8-687277457753140785035788636886212 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI-HPKKG-----S-TYWTGGNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV-~Pgkg-----g-~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) +-.||+|-|.||..|+.-+++.++. |-.|.+-+ +|.|- + +.+.++ +=-.+++.++.+. +|..+..+. T Consensus 3 ~m~KIlItGatG~iG~~l~~~Ll~~-g~~V~~l~R~~~~~~~~~~~~~~i~~D---~~d~~~l~~~~~~--~d~vi~~~~ 76 (227) T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIENEHLKVKKAD---VSSLDEVCEVCKG--ADAVISAFN 76 (227) T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCCCTTEEEECCC---TTCHHHHHHHHTT--CSEEEECCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHCCCCCCCEEEEECC---CCCHHHHHHHHCC--CCCCEEECC T ss_conf 9999999889988999999999978-498999986847622246623776135---5546668988607--751103414 No 161 >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoid, oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Probab=68.77 E-value=5.8 Score=18.68 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=56.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CCEEECCCCCCCCCCCCHHHHCCCCCCC Q ss_conf 9739998888437799999998626981899765899---------------8868727745775314078503578863 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK---------------GSTYWTGGNVNVPVFTTVAEAKERTAAN 72 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk---------------gg~~~~g~~~~iPvy~sv~ea~~~~~~D 72 (300) ..||+|-|.||..|+.-.+..++. |..|.+-+.+.. |-+.+.++ +--.+++.+|.+..+.+ T Consensus 10 k~KVlV~GaTG~iG~~lv~~Ll~~-g~~V~vl~R~~~~~~~k~~~~~~l~~~gv~~v~gD---~~d~~~l~~a~~g~~~~ 85 (346) T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGL---INEQEAMEKILKEHEID 85 (346) T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECC---TTCHHHHHHHHHHTTCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE---CCCCCHHHHHHHCCCCC T ss_conf 991999898968999999999968-99489998999877557899988750893899930---55510399996215532 Q ss_pred EEEEECCHHHH---HHHHHHHHHCCCCEEEEEC Q ss_conf 68862120456---7889999853995899805 Q gi|254781050|r 73 ASVIYVPPSGA---GDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 73 ~avI~VP~~~v---~dai~Ea~~agik~iviit 102 (300) .-+-.+....+ ...+..|.++|....++.+ T Consensus 86 ~vi~~~~~~~~~~~~~li~A~~~ag~~~~~~~s 118 (346) T 3i6i_A 86 IVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346) T ss_dssp EEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 378337863056667789999974965898632 No 162 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=68.08 E-value=6 Score=18.59 Aligned_cols=187 Identities=12% Similarity=0.159 Sum_probs=79.8 Q ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH---HHHHHHHHHHHHCCCCEEEEECCCCCHH Q ss_conf 6981899765899886872774577531407850357886368862120---4567889999853995899805884688 Q gi|254781050|r 32 CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP---SGAGDAIIESIEAEIPLIVCITEGIPVL 108 (300) Q Consensus 32 ~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~---~~v~dai~Ea~~agik~iviiteGip~~ 108 (300) +.+|.||-|.|.-...++. =+++.+.++.++.+.++-+.+... ..-.+.+..++..++..+++..-.... T Consensus 6 ~~s~~Iglv~p~~~~~f~~------~l~~gi~~~a~~~g~~l~v~~~~~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~- 78 (290) T 3clk_A 6 KSSNVIAAVVSSVRTNFAQ------QILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTD- 78 (290) T ss_dssp --CCEEEEECCCCSSSHHH------HHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC---- T ss_pred CCCCEEEEEECCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCH- T ss_conf 9999899991999878999------999999999998599899996899999999999999986698789997133455- Q ss_pred HHHHHHHHHHCCCCEEE--ECCCC---EEECCCCHHCCEEC-CCCCCCC--CEEEEEECCCHHH--H----HHHHHHHCC Q ss_conf 89999998401771894--06851---01355510002001-1235778--6799980541478--9----999999719 Q gi|254781050|r 109 DMVRVKARLEKSSSRLI--GPNCP---GILTPDSCKIGIMP-GSIFRKG--SVGILSRSGTLTY--E----AVFQTSQEG 174 (300) Q Consensus 109 d~~~l~~~A~~~g~rii--GPNc~---Gii~p~~~~lgi~p-~~~~~pG--~VgivSqSG~l~~--e----~~~~~~~~g 174 (300) +..+.+++.++.++ +.... -.+.++....|-.. ..+.+.| +|++++-+..... + ......+.+ T Consensus 79 ---~~~~~l~~~~iPvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~ 155 (290) T 3clk_A 79 ---DNLQLLQSSDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEAN 155 (290) T ss_dssp ----CHHHHHCC--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTT T ss_pred ---HHHHHHHHCCCCEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC T ss_conf ---99999986378632146666899998996768999999988986599569997177554226777799999999859 Q ss_pred CCEE-EEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC Q ss_conf 9516-7640556744678999999999739987288999705872489999999986422675 Q gi|254781050|r 175 LGQS-TAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRK 236 (300) Q Consensus 175 ~G~S-~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~ 236 (300) .-.- ..+..+.+. -.+..+.++.+.++++..+|+.. .+.-+..++++..+.+.+ T Consensus 156 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ai~~~------~d~~a~~~~~~l~~~gl~ 210 (290) T 3clk_A 156 IAINQEWIKPGDYS--YTSGEQAMKAFGKNTDLTGIIAA------SDMTAIGILNQASSFGIE 210 (290) T ss_dssp CCCCGGGEECCCSS--HHHHHHHHHHHCTTCCCSEEEES------SHHHHHHHHHHHHHTTCC T ss_pred CCCCCCCCCCCCHH--HHHHHHHHHHHHCCCCCEEECCC------CHHHHHCHHHHHHHHHCC T ss_conf 98663224567515--65699999975223311044147------767653438999874056 No 163 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=67.87 E-value=6.1 Score=18.56 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=57.0 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 39998888437799999998626981-899765899886872774577--531407850357886368862120456788 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQ-VVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~-ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) +|+|.|. |.-|..-++...++ |.+ -|.|+.+.+.-.... ...++ ..+.++.+..+ ..+|+-++++|+..+.+. T Consensus 35 ~I~IIGl-G~mG~siA~~L~~~-g~~~~V~g~D~~~~~~~~a-~~~g~id~~~~~~~~~~~-~~~dlIilavP~~~~~~v 110 (314) T 3ggo_A 35 NVLIVGV-GFMGGSFAKSLRRS-GFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTFREI 110 (314) T ss_dssp EEEEESC-SHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHH-HHTTSCSEEESCTTGGGG-GCCSEEEECSCGGGHHHH T ss_pred EEEEEEE-CHHHHHHHHHHHCC-CCCCEEEEEECCHHHHHHH-HHCCCCCCCCCCHHHHHC-CCCCEEEECCCHHHHHHH T ss_conf 7999820-88999999999806-9998899997999999999-986997511489888725-688889983550432104 Q ss_pred HHHHHHC-CCCEEEEECCCCC Q ss_conf 9999853-9958998058846 Q gi|254781050|r 87 IIESIEA-EIPLIVCITEGIP 106 (300) Q Consensus 87 i~Ea~~a-gik~iviiteGip 106 (300) +.+-.+. .-..+|+-+..+. T Consensus 111 l~~l~~~l~~~~iI~Dv~SvK 131 (314) T 3ggo_A 111 AKKLSYILSEDATVTDQGSVK 131 (314) T ss_dssp HHHHHHHSCTTCEEEECCSCC T ss_pred HHHHHHHCCCCCCCCCCCCCC T ss_conf 554311103455445645541 No 164 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Probab=67.82 E-value=6.1 Score=18.56 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHCCCCEEEE Q ss_conf 45678899998539958998 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVC 100 (300) Q Consensus 81 ~~v~dai~Ea~~agik~ivi 100 (300) ..+.+.+.++-+..++.+++ T Consensus 25 ~~i~~~l~~a~~~~~kaivL 44 (230) T 3bpp_A 25 DQFDRYITIAEQDNAEAIII 44 (230) T ss_dssp HHHHHHHHHHHHTTCSEEEE T ss_pred HHHHHHHHHHHHCCCCEEEE T ss_conf 99999999997689986999 No 165 >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Probab=67.66 E-value=6.1 Score=18.54 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=10.3 Q ss_pred HHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999973998728899970 Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300) Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300) .+.|+.+++||+.++|++.++ T Consensus 57 ~~al~~~~~d~~i~vvvl~g~ 77 (263) T 2j5g_A 57 PDAFYDISRDRDNRVVILTGS 77 (263) T ss_dssp HHHHHHHHHCTTCCEEEEECB T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999975999859999788 No 166 >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Probab=67.15 E-value=6.2 Score=18.50 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=29.9 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC----C--CCCCCCCHHHHHHHHH Q ss_conf 78679998054147899999997199516764055----6--7446789999999997 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG----G--DPVKGTEFIDVLELFL 201 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG----~--D~~~G~~~~d~L~~~~ 201 (300) .|.--.|.=.|..++.++..+.+.|. ++|++. . ++ .|.|..+++++.. T Consensus 220 ~g~~vaIQG~GnVG~~~a~~L~~~Ga---kvvavsD~~G~i~~~-~Gldv~~L~~~~~ 273 (424) T 3k92_A 220 QNARIIIQGFGNAGSFLAKFMHDAGA---KVIGISDANGGLYNP-DGLDIPYLLDKRD 273 (424) T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC---EEEEEECSSCEEECT-TCCCHHHHHHHCC T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC---EEEEEECCCCCEEEC-CCCCHHHHHHHHH T ss_conf 88779997157268999999987699---799998699738704-6635689999998 No 167 >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Probab=67.12 E-value=3 Score=20.51 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=66.2 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECC----CCCHHHHHHHHHHHHCCCCEEEECCCCE Q ss_conf 753140785035788636886212045678899998539958998058----8468889999998401771894068510 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITE----GIPVLDMVRVKARLEKSSSRLIGPNCPG 131 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviite----Gip~~d~~~l~~~A~~~g~riiGPNc~G 131 (300) .|.|.|+.+..+-.++. ++... -++.+.++++...|.+++.+- +....|..+|.++|+++++.++==++-+ T Consensus 108 ~~~~~s~~~~~~l~g~~----~~~~~-~~e~l~~~i~~~tk~i~~~~~~~~~~~~~~~l~~i~~la~~~~~~vivDea~~ 182 (374) T 2aeu_A 108 LPGHPSIERSCKIVNAK----YFESD-KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASG 182 (374) T ss_dssp SSCCTHHHHHHHHTTCE----EEEES-CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTH T ss_pred CCCCHHHHHHHHHCCCE----EECCC-CHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 87654599999982997----98999-99999963776765999954888985787889999999987688599988854 Q ss_pred EECC------CCHHCCE-----ECCCCCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 1355------5100020-----0112357786799980541478999999 Q gi|254781050|r 132 ILTP------DSCKIGI-----MPGSIFRKGSVGILSRSGTLTYEAVFQT 170 (300) Q Consensus 132 ii~p------~~~~lgi-----~p~~~~~pG~VgivSqSG~l~~e~~~~~ 170 (300) .... .....|. .-++.+..-.+|++.-+-.+...+.... T Consensus 183 ~~~~~~~~~~~~~~~g~di~~~S~sK~~~g~~~G~i~g~~~li~~l~~~~ 232 (374) T 2aeu_A 183 ARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEG 232 (374) T ss_dssp HHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHH T ss_conf 31221347899899298449841764566872205616099999999985 No 168 >2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* Probab=67.11 E-value=5.8 Score=18.68 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=14.4 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 840177189406851013555100020011 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) ++-...+|+..+++. +-.| ..++|+.|+ T Consensus 124 lal~~D~ria~~~a~-f~~p-e~~lGl~p~ 151 (272) T 2iex_A 124 LHVVCDLTIAADNAI-FGQT-GPKVGSFDG 151 (272) T ss_dssp HHHHSSEEEEETTCE-EECC-HHHHTCCCC T ss_pred HHHCCCCCEECCCCE-EECC-CCCCCCCCC T ss_conf 986036445668878-9875-001340766 No 169 >3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C* Probab=66.23 E-value=6.5 Score=18.36 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=48.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHH Q ss_conf 679998054147899999997199516764055-67446789999999997399872889997058724899 Q gi|254781050|r 152 SVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG-GDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEE 222 (300) Q Consensus 152 ~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG-~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~ 222 (300) .|=+||.|-.|...+...+.+-.-.+.....=| .|--+|||+..+.+..+++. .+.++++.-.| ++.-. T Consensus 4 GIViVSHS~~lA~Gv~eL~~qma~dv~i~~aGG~~dg~iGTs~~~I~~AIe~~~-~dgVlvl~DLG-SA~m~ 73 (131) T 3ct6_A 4 GIVIVSHSPEIASGLKKLIREVAKNISLTAIGGLENGEIGTSFDRVMNAIEENE-ADNLLTFFDLG-SARMN 73 (131) T ss_dssp EEEEEESCHHHHHHHHHHHHTTCSSSCEEEEESCTTSCSSCCHHHHHHHHHHSS-CSEEEEEESSG-GGHHH T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEEECC-HHHHH T ss_conf 499995879999999999998538984898618888977779999999998448-99879998566-58989 No 170 >3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium} Probab=65.96 E-value=3.6 Score=20.00 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=6.6 Q ss_pred HHHHHHCCCCCCEEEEEEE Q ss_conf 9999973998728899970 Q gi|254781050|r 196 VLELFLADEATESIVMVGE 214 (300) Q Consensus 196 ~L~~~~~Dp~T~~Ivl~gE 214 (300) .|+.+++||+.++|++-++ T Consensus 60 al~~~~~d~~vr~vvltg~ 78 (270) T 3p85_A 60 ALADAETDDDVDVVIITGA 78 (270) T ss_dssp HHHHHHHCTTCSEEEEEES T ss_pred HHHHHHHCCCEEEEEEECC T ss_conf 9999975989169999799 No 171 >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Probab=65.57 E-value=6.7 Score=18.28 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=59.4 Q ss_pred ECCCEEEEECCCCHHHHHH-HHHHHHHCCCCEEEEECCCCCCEEEC-CCCCCCCCCCCHHHH-C---CCCCCCEEEEECC Q ss_conf 1797399988884377999-99998626981899765899886872-774577531407850-3---5788636886212 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFH-TEQAILYCQTQVVGGIHPKKGSTYWT-GGNVNVPVFTTVAEA-K---ERTAANASVIYVP 79 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~-~~~~~~y~gt~ivagV~Pgkgg~~~~-g~~~~iPvy~sv~ea-~---~~~~~D~avI~VP 79 (300) ++.-||-|.| ||.-|.-. .+.....-.-++++-++....|+... .....+|..+.-.|. . +..++|+...+.| T Consensus 2 tkkikVaIiG-tG~iG~eLl~~lL~~hp~~ei~av~s~~~ag~~l~~a~~~~~~~~~~~~~~~~~~~~~~~vDvVF~AtP 80 (312) T 1nvm_B 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312) T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEECCC T ss_conf 9887699986-869999999999845998689999946703420455666289755565210100032024768998688 Q ss_pred HHHHH--HHHHHHHHCCCCEEEEECCC Q ss_conf 04567--88999985399589980588 Q gi|254781050|r 80 PSGAG--DAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 80 ~~~v~--dai~Ea~~agik~iviiteG 104 (300) ..... +...+++++|++. +-.|.- T Consensus 81 ~g~~~~~~~~~~~~~~g~~v-IDls~d 106 (312) T 1nvm_B 81 ASAHVQNEALLRQAKPGIRL-IDLTPA 106 (312) T ss_dssp HHHHHHHHHHHHHHCTTCEE-EECSTT T ss_pred CHHHHHHHCCHHHHHCCCEE-EECCHH T ss_conf 37777622058899789979-966311 No 172 >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Probab=65.30 E-value=6.8 Score=18.25 Aligned_cols=138 Identities=12% Similarity=0.189 Sum_probs=59.6 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 78679998054147899999997199516764055674467899999999973998728899970587248999999998 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKD 229 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~ 229 (300) |.+--+++-+|.-..... +... .-......+.+.- -+|..+.-.+-.-...|+.++|++.|- |..-.+..++.-. T Consensus 375 ~~~~iiv~d~G~~~~~~~-~~~~-~~~~~~~~~~~~g-~mG~~l~~aiGa~la~p~~~vv~i~GD--gsf~~~~~eL~ta 449 (566) T 2vbi_A 375 TSNTTLVAETGDSWFNAM-RMTL-PRGARVELEMQWG-HIGWSVPSAFGNAMGSQDRQHVVMVGD--GSFQLTAQEVAQM 449 (566) T ss_dssp CTTEEEEECSSHHHHHHH-TCCC-CTTCEEECCTTTC-CTTTHHHHHHHHHHTCTTSEEEEEEEH--HHHHHHGGGHHHH T ss_pred CCCCEEEEECCCCHHHHH-HCCC-CCCCEEEECCCCC-CCCCCCCHHHHHHHHCCCCEEEEEECC--HHHHCCHHHHHHH T ss_conf 368579952676244554-2146-7774277316645-578774057778873899749999887--3652579999999 Q ss_pred HHHCCCCCCEEEEEEEECC-CCCCCCCE--EEEECCCCCCCHHHHHHHHHHC---CC-EECCCHHHHHHHHHHHHH Q ss_conf 6422675526899843015-76553220--0112248888999999999988---97-578898999999999984 Q gi|254781050|r 230 EAKRGRKKPIVGFVAGKTA-PPGRTMGH--AGAVISGGKGGAEDKINAMKEA---GI-CIAPSPARIGRSLVELLG 298 (300) Q Consensus 230 ~~~~~~~KPVva~~~GrtA-p~g~~~gH--aGAi~~~~~g~a~~k~~al~~a---Gv-~v~~s~~el~~~l~~~l~ 298 (300) . ..+-|++.++.--.. ...+++-+ .+.+-.- +...-.+++.-+ |. .++++++||...+++.+. T Consensus 450 -~--~~~lpi~ivV~NN~g~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~g~g~~v~~~~el~~al~~a~~ 519 (566) T 2vbi_A 450 -V--RYELPVIIFLINNRGYVIEIAIHDGPYNYIKNW---DYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKA 519 (566) T ss_dssp -H--HTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCC---CTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHH T ss_pred -H--HHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCC---CHHHHHHHCCCCHHCEEEEEECCHHHHHHHHHHHHH T ss_conf -9--949792999997993788966654468878899---868988766850435035997369999999999986 No 173 >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Probab=65.03 E-value=4.8 Score=19.19 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=13.8 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 40177189406851013555100020011 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) +-...+|+..+++- +-.| ..++|+.|. T Consensus 116 al~cD~~ia~~~a~-f~~p-e~~~Gl~p~ 142 (260) T 1mj3_A 116 AMMCDIIYAGEKAQ-FGQP-EILLGTIPG 142 (260) T ss_dssp HHHSSEEEEETTCE-EECG-GGGGTCCCC T ss_pred HHHCCEEEECCCCE-EECC-CCCCCCCCC T ss_conf 99789999769988-9895-015065864 No 174 >2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} Probab=64.44 E-value=7 Score=18.14 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=46.7 Q ss_pred HHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECC--HHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 99862698189976589988687277457753140785035788636886212--0456788999985399589980588 Q gi|254781050|r 27 QAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVP--PSGAGDAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 27 ~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP--~~~v~dai~Ea~~agik~iviiteG 104 (300) +++..+.|+.++-+.|.-...++ -.+++.+.++.++.+.++.+.... +..-.+.+....+.++..+++.... T Consensus 13 r~L~~~~s~~Igvi~p~~~~~~~------~~l~~~i~~~a~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 86 (293) T 2iks_A 13 AGLRAGRTRSIGLVIPDLENTSY------TRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293) T ss_dssp -----CCCCEEEEEESCSCSHHH------HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS T ss_pred HHHHHCCCCEEEEEECCCCCHHH------HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99870899989999499988799------999999999999869999999689998999999999996699899995365 Q ss_pred CCHHHHHHHHHHHHCCCCEEE Q ss_conf 468889999998401771894 Q gi|254781050|r 105 IPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 105 ip~~d~~~l~~~A~~~g~rii 125 (300) -+.. ...+.++..++.++ T Consensus 87 ~~~~---~~~~~~~~~~~pvv 104 (293) T 2iks_A 87 PPEH---PFYQRWANDPFPIV 104 (293) T ss_dssp CTTC---HHHHTTTTSSSCEE T ss_pred CCCH---HHHHHHHHCCCCEE T ss_conf 4457---99999984798289 No 175 >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Probab=63.83 E-value=4.7 Score=19.29 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=42.6 Q ss_pred CCCCCCHHHHCCC----CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCCCEEEECC Q ss_conf 7531407850357----8863688621204567889999853995899805884688---89999998401771894068 Q gi|254781050|r 56 VPVFTTVAEAKER----TAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSSSRLIGPN 128 (300) Q Consensus 56 iPvy~sv~ea~~~----~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g~riiGPN 128 (300) -..|.||.||..+ .++.+-+.++.+....+...|. -+++.. +++.-||+.+ .+....++||++++-.+|= T Consensus 302 ~DAY~Sv~EAL~HAg~~~~~kv~i~wIdse~le~~~~~~-L~~~dG-IlVPGGFG~RGiEGKI~Ai~yARen~IPfLGI- 378 (545) T 1s1m_A 302 PDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEI-LKGLDA-ILVPGGFGYRGVEGMITTARFARENNIPYLGI- 378 (545) T ss_dssp GGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTT-TTTCSE-EEECCCCSSTTHHHHHHHHHHHHHTTCCEEEE- T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCHHHHHH-HCCCCE-EEECCCCCCCCCCHHHHHHHHHHHCCCCEEEH- T ss_conf 758999886886521024887899981556522234444-213561-99678888777031999999997679985324- Q ss_pred CCEEE Q ss_conf 51013 Q gi|254781050|r 129 CPGIL 133 (300) Q Consensus 129 c~Gii 133 (300) |+|+- T Consensus 379 CLGmQ 383 (545) T 1s1m_A 379 CLGMQ 383 (545) T ss_dssp THHHH T ss_pred HHHHH T ss_conf 67679 No 176 >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Probab=63.08 E-value=7.5 Score=17.98 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=8.1 Q ss_pred HHHHHHHCCCCCCEEEEEEE Q ss_conf 99999973998728899970 Q gi|254781050|r 195 DVLELFLADEATESIVMVGE 214 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.++.+++||+.++|++.|+ T Consensus 40 ~~l~~~~~d~~v~~vVl~g~ 59 (263) T 3l3s_A 40 DALRRAMGDDHVHVLVIHGP 59 (263) T ss_dssp HHHHHHHTCTTCCEEEEECC T ss_pred HHHHHHHHCCCCEEEEEECC T ss_conf 99999975889569999789 No 177 >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Probab=63.06 E-value=7.5 Score=17.98 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=30.0 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEC----CC--CCCCCCCHHHHHHHHHCCC Q ss_conf 7867999805414789999999719951676405----56--7446789999999997399 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGI----GG--DPVKGTEFIDVLELFLADE 204 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~Vsi----G~--D~~~G~~~~d~L~~~~~Dp 204 (300) +|.--.|.-.|..++.++..+.+.+ | ..+|++ |. ++ -|.|+.+++++..... T Consensus 208 ~g~~vaIQG~GnVG~~~a~~L~~~~-G-a~vVavsD~~G~i~~~-~Gld~~~l~~~~~~~~ 265 (415) T 2tmg_A 208 KKATVAVQGFGNVGQFAALLISQEL-G-SKVVAVSDSRGGIYNP-EGFDVEELIRYKKEHG 265 (415) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-C-CEEEEEECSSCEEECT-TCCCHHHHHHHHHHSS T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-CEEEEEECCCCCEECC-CCCCHHHHHHHHHHCC T ss_conf 7887999857738899998777756-9-8599970677706777-7798899999998608 No 178 >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium 104} Probab=62.95 E-value=7.5 Score=17.97 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=10.4 Q ss_pred HHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999973998728899970 Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300) Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300) .+.|+.+++|+++++|++-++ T Consensus 44 ~~~l~~~~~d~~v~vvvl~g~ 64 (267) T 3oc7_A 44 HQGLRDASSDPAVRVVVLAHT 64 (267) T ss_dssp HHHHHHHHHCTTCCEEEEEEC T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999965999559999788 No 179 >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open active site loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Probab=62.90 E-value=7.5 Score=17.96 Aligned_cols=106 Identities=9% Similarity=-0.012 Sum_probs=47.5 Q ss_pred EECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCC----CCC Q ss_conf 405567446789999999997399872889997058724899999999864226755268998430157-655----322 Q gi|254781050|r 181 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAP-PGR----TMG 255 (300) Q Consensus 181 VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp-~g~----~~g 255 (300) +..++..-+|..+.-.+-.-...|+.+++++.|- |..-.+.-++.-. ...+.|++.++.--..- .-+ ... T Consensus 416 ~~~~~~g~iG~~l~~Aiga~~a~~~~~vv~i~GD--gsf~~~~~eL~ta---~~~~~pi~ivV~NN~g~g~~~~~q~~~~ 490 (565) T 2nxw_A 416 MAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGD--GAFQMTGWELGNC---RRLGIDPIVILFNNASWEMLRTFQPESA 490 (565) T ss_dssp ECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEH--HHHHHHGGGGGGH---HHHTCCCEEEEEECSBCHHHHHHCTTCG T ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC--HHHCCCHHHHHHH---HHHCCCCEEEEEECCCCHHHEHHCCCCC T ss_conf 6014656677761589999970999808999882--4740479999999---9829891999998997731430155677 Q ss_pred EEEEECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHH Q ss_conf 0011224888899999999998897--578898999999999984 Q gi|254781050|r 256 HAGAVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLG 298 (300) Q Consensus 256 HaGAi~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~ 298 (300) ++ .+ ..-+.. +.-+..|+ ..+++++||...|++.++ T Consensus 491 ~~-~~---~~~d~~---~~A~a~G~~~~~v~~~~el~~al~~a~~ 528 (565) T 2nxw_A 491 FN-DL---DDWRFA---DMAAGMGGDGVRVRTRAELKAALDKAFA 528 (565) T ss_dssp GG-BC---CCCCHH---HHTGGGTSEEEEECBHHHHHHHHHHHHH T ss_pred CC-CC---CCCCHH---HHHHHCCCEEEEECCHHHHHHHHHHHHH T ss_conf 78-89---999999---9999779869997999999999999984 No 180 >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} Probab=62.45 E-value=7.7 Score=17.91 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=11.3 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 84017718940685101355510002001 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ++-...+|+..+++ -+-.| ..++|+.| T Consensus 117 lala~D~ria~~~a-~f~~p-e~~~Gl~p 143 (266) T 3fdu_A 117 ILLQADLVFADNTA-LFQIP-FVSLGLSP 143 (266) T ss_dssp GGGGCSEEEECTTC-EEECC-TTTTTCCC T ss_pred EECCCCCCEECCCC-EEECC-HHHCCCCC T ss_conf 22152311114797-89786-25328882 No 181 >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: PLP; 2.33A {Pyrococcus furiosus dsm 3638} SCOP: c.67.1.1 Probab=62.44 E-value=7 Score=18.18 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=52.7 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300) -|.|..........+ .-++.+|.. .-++.+.+++....+.+++.+-+= +..+..+|.+.|+++++. T Consensus 132 ~P~Y~~y~~~~~~~g--~~~v~~~~~~~~~~~~~~e~l~~~~~~~~~~~~l~~P~NPTG~~~s~~~l~~l~~~a~~~~~~ 209 (406) T 1xi9_A 132 GPSYPPYTGLVKFYG--GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIP 209 (406) T ss_dssp ESCCHHHHHHHHHTT--CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCC T ss_pred CCCCCHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEE T ss_conf 796630377898739--879997343224778799999986544782899928989874342288999999764414866 Q ss_pred EEECCCCEEEC Q ss_conf 94068510135 Q gi|254781050|r 124 LIGPNCPGILT 134 (300) Q Consensus 124 iiGPNc~Gii~ 134 (300) +|==.+-.-+. T Consensus 210 ii~De~y~~~~ 220 (406) T 1xi9_A 210 VISDEIYDLMT 220 (406) T ss_dssp EEEECTTTTCB T ss_pred EECCCCHHHCC T ss_conf 74052023204 No 182 >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Probab=62.03 E-value=7.8 Score=17.86 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=24.2 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEC----CC--CCCCCCCHHHHHHHHH Q ss_conf 7867999805414789999999719951676405----56--7446789999999997 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGI----GG--DPVKGTEFIDVLELFL 201 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~Vsi----G~--D~~~G~~~~d~L~~~~ 201 (300) .|..-.|.=.|..++.++..+.+.|. ++|++ |. |+ -|.|..++.++.. T Consensus 243 ~g~tvaIQGfGnVG~~~A~~L~~~Ga---kvVavsD~~G~i~~~-~Gld~~~L~~~~~ 296 (501) T 3mw9_A 243 GDKTFVVQGFGNVGLHSMRYLHRFGA---KCITVGESDGSIWNP-DGIDPKELEDFKL 296 (501) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEECSSCEEECT-TCCCHHHHHHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCCEEEEC-CCCCHHHHHHHHH T ss_conf 68579996887579999999997025---653675378659836-5322689999999 No 183 >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 Probab=61.97 E-value=6.4 Score=18.41 Aligned_cols=48 Identities=2% Similarity=-0.033 Sum_probs=36.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 204567889999853995899805884688899999984017718940 Q gi|254781050|r 79 PPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 79 P~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) +...+.+.+.++.++|+..+|..|-..-.+|...+.+++++++++++. T Consensus 31 ~~~~~~~~l~~~~~~Gv~~iV~~t~~~~grd~~~~~~la~~~~~~i~~ 78 (291) T 1bf6_A 31 QYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVA 78 (291) T ss_dssp CHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 078899999999985998899808886624899999999867998789 No 184 >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structural genomics, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Probab=59.95 E-value=8.5 Score=17.63 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=49.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC---CCCCCCCCCC--CHHHHCCCCCCCEEEEECCHHHH Q ss_conf 739998888437799999998626981899765899886872---7745775314--07850357886368862120456 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWT---GGNVNVPVFT--TVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~---g~~~~iPvy~--sv~ea~~~~~~D~avI~VP~~~v 83 (300) .||-|-|.||--|..-.+...++-.-+++.--+....|+.+. ...+....+. +..+.. .++|++..++|.... T Consensus 14 ikVaIvGATG~VG~eli~lL~~hP~~el~~laS~~saGk~~~~~~~~~~~~~~~~~~d~~~~~--~~~Dvvf~alp~~~s 91 (351) T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVS--KNCDVLFTALPAGAS 91 (351) T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHH--HHCSEEEECCSTTHH T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHHH--CCCCEEEECCCCHHH T ss_conf 699998956099999999997599887999978765897988948650134653317999971--899799984771566 Q ss_pred HHHHHHHHHCCCC Q ss_conf 7889999853995 Q gi|254781050|r 84 GDAIIESIEAEIP 96 (300) Q Consensus 84 ~dai~Ea~~agik 96 (300) .+... ..+|++ T Consensus 92 ~~~~~--~~~g~~ 102 (351) T 1vkn_A 92 YDLVR--ELKGVK 102 (351) T ss_dssp HHHHT--TCCSCE T ss_pred HHHHH--HCCCCE T ss_conf 76776--426999 No 185 >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Probab=59.87 E-value=7.8 Score=17.86 Aligned_cols=30 Identities=3% Similarity=-0.080 Sum_probs=17.7 Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 636886212045678899998539958998 Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVC 100 (300) Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~ivi 100 (300) +-.|+.........+.+.++.+.|+..+-+ T Consensus 9 IspSil~ad~~~L~~~i~~l~~~~~d~iHi 38 (228) T 1h1y_A 9 IAPSMLSSDFANLAAEADRMVRLGADWLHM 38 (228) T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEE T ss_pred EEEEHHCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 870131069999999999999759998999 No 186 >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Probab=58.99 E-value=8.8 Score=17.53 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=18.2 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 78679998054147899999997199 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) .|..-.|.=.|..++.++..+.+.|. T Consensus 209 ~g~~vaIQGfGnVG~~~A~~L~~~Ga 234 (421) T 1v9l_A 209 EGKTVAIQGMGNVGRWTAYWLEKMGA 234 (421) T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCC T ss_conf 78879995078407999998863586 No 187 >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Probab=58.66 E-value=8.9 Score=17.49 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=46.6 Q ss_pred CCCCCEEEEECCHHHHH--HHHHHHHH--CCCCEEEEE----CCCCCHHHHHHHHHHHHCCCCEEEE--CCCCEEEC--C Q ss_conf 78863688621204567--88999985--399589980----5884688899999984017718940--68510135--5 Q gi|254781050|r 68 RTAANASVIYVPPSGAG--DAIIESIE--AEIPLIVCI----TEGIPVLDMVRVKARLEKSSSRLIG--PNCPGILT--P 135 (300) Q Consensus 68 ~~~~D~avI~VP~~~v~--dai~Ea~~--agik~ivii----teGip~~d~~~l~~~A~~~g~riiG--PNc~Gii~--p 135 (300) ..+.+...+-+|...-+ +...+..+ ..++.+.+. +.|+ ..|..++.++|+++|..++= =-++|.+. . T Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~t~tG~-~~pi~~i~~~~~~~g~l~~vD~~qs~G~~p~dv 179 (366) T 1m32_A 101 LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGM-LNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 179 (366) T ss_dssp HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTE-ECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCT T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECEECHHCE-EEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC T ss_conf 8399640013587877787799999733588589999682421124-535788888887459648835310247652110 Q ss_pred CCHHCCEE--CC-C-CCCCCCEEEEEEC Q ss_conf 51000200--11-2-3577867999805 Q gi|254781050|r 136 DSCKIGIM--PG-S-IFRKGSVGILSRS 159 (300) Q Consensus 136 ~~~~lgi~--p~-~-~~~pG~VgivSqS 159 (300) ....+-+. .+ + ++.|..+|++.-| T Consensus 180 ~~~~~D~~~~s~~K~l~gp~G~g~l~~~ 207 (366) T 1m32_A 180 AALHIDYLISSANKCIQGVPGFAFVIAR 207 (366) T ss_dssp TTTTCSEEEEESSSTTCCCSSEEEEEEE T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEEEC T ss_conf 1331124521034446689977999987 No 188 >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis} Probab=58.61 E-value=8.9 Score=17.49 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=22.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 39958998058846888999999840177189406851013555100020011 Q gi|254781050|r 93 AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 93 agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) ...+.|..| .|...---.+ ++-...+|+..+++. +-.| ..++|+.|. T Consensus 114 ~~~PvIa~v-~G~a~GgG~~---lal~~D~ria~~~a~-f~~p-e~~~Gl~p~ 160 (278) T 3h81_A 114 VRTPTIAAV-AGYALGGGCE---LAMMCDVLIAADTAK-FGQP-EIKLGVLPG 160 (278) T ss_dssp CCSCEEEEE-CBEEETHHHH---HHHHSSEEEEETTCE-EECG-GGGGTCCCC T ss_pred CCCCEEEEE-CCEECHHHHH---HHHHCCEEEEECCCE-EECC-CCCCCCCCC T ss_conf 899899998-0727179899---999789999839988-9785-118166864 No 189 >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} Probab=58.48 E-value=9 Score=17.48 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=8.7 Q ss_pred CCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 17718940685101355510002001 Q gi|254781050|r 119 KSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 119 ~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ....|+..+++ -+-.| ..++|+.| T Consensus 147 ~cD~ria~~~a-~f~~p-e~~~Gl~p 170 (287) T 2vx2_A 147 SCDIAVASDKS-SFATP-GVNVGLFC 170 (287) T ss_dssp HSSEEEEETTC-EEECC-GGGGTCCC T ss_pred HCCCCEECCCC-EEECH-HHCCCCCC T ss_conf 05645377886-89871-11527078 No 190 >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Probab=57.84 E-value=9.2 Score=17.41 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 39998888437799999998626981899765 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH 41 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~ 41 (300) ||+|-|.||..|+.-++..++. |.+|++.+. T Consensus 2 kIlV~GatG~iG~~lv~~L~~~-G~~V~~~~R 32 (224) T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVR 32 (224) T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TCEEEEEES T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEEC T ss_conf 6999998958999999999978-798999988 No 191 >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Probab=57.64 E-value=9.3 Score=17.39 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=69.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEECC--C----------CCCCCCCCCHHHHCCCCCCCEEE Q ss_conf 73999888843779999999862698189976-58998868727--7----------45775314078503578863688 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI-HPKKGSTYWTG--G----------NVNVPVFTTVAEAKERTAANASV 75 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV-~Pgkgg~~~~g--~----------~~~iPvy~sv~ea~~~~~~D~av 75 (300) =||-|-|.||--|.--.+.....-.-+++.-. +....|+.+.. + ..++++-+.-.+.. -++|+.+ T Consensus 5 ikvaIvGAsGy~G~eL~~lL~~Hp~~el~~v~~S~~~aG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~Dvvf 82 (350) T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH--KDVDVVL 82 (350) T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG--TTCSEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCHHHH--CCCCEEE T ss_conf 88999894129999999999729996089999615427866055255201477630003633786676572--2787899 Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCC----------CHHHH------HHHHHHHHCCCCEEEECCCC Q ss_conf 621204567889999853995899805884----------68889------99999840177189406851 Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGI----------PVLDM------VRVKARLEKSSSRLIGPNCP 130 (300) Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGi----------p~~d~------~~l~~~A~~~g~riiGPNc~ 130 (300) .+.|.....+.+.+..++|.+ +|=.+.-| |+... .+..+..-....++-.|||. T Consensus 83 lalP~g~s~~~~~~~~~~g~~-VIDlSadfRl~~~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~IanPGC~ 152 (350) T 2ep5_A 83 SALPNELAESIELELVKNGKI-VVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCT 152 (350) T ss_dssp ECCCHHHHHHHHHHHHHTTCE-EEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSSEEEECCCHH T ss_pred ECCCCHHHHHHHHHHHHCCCE-EEECCHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCCEEECCCCC T ss_conf 837814567889999877988-9828455244567750345212421023555567634567788689870 No 192 >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Probab=56.80 E-value=2.5 Score=21.03 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=45.8 Q ss_pred CCCCHHHHCCCCCCCEEEEECCHH-------HHHHHHHHHHHC---CCCEEEEECCC-C---CHHHHHHHHHHHHCCCCE Q ss_conf 314078503578863688621204-------567889999853---99589980588-4---688899999984017718 Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPS-------GAGDAIIESIEA---EIPLIVCITEG-I---PVLDMVRVKARLEKSSSR 123 (300) Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~-------~v~dai~Ea~~a---gik~iviiteG-i---p~~d~~~l~~~A~~~g~r 123 (300) ...|+..+..- .++-.++|++. .-+++++++++. ....+|+.|.+ + -..|..++.++|+++|+. T Consensus 171 ~H~S~~ka~~~--~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~v~~t~~~~~~g~~d~i~~i~~i~~~~~~~ 248 (501) T 3hl2_A 171 DQKSCFKSMIT--AGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIP 248 (501) T ss_dssp CCHHHHHHHHH--TTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCC T ss_pred CHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 31889999998--1994489843677843574999999999872555727999658988881020099999999996994 Q ss_pred EEECCCCEEEC Q ss_conf 94068510135 Q gi|254781050|r 124 LIGPNCPGILT 134 (300) Q Consensus 124 iiGPNc~Gii~ 134 (300) ++==||.|... T Consensus 249 ~~vD~a~g~~~ 259 (501) T 3hl2_A 249 HIVNNAYGVQS 259 (501) T ss_dssp EEEECTTCTTC T ss_pred EEEECCCHHHH T ss_conf 89816422320 No 193 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=56.69 E-value=4.5 Score=19.38 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=50.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC--CCCCCCCC--CCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 9739998888437799999998626981899765899886872--77457753--1407850357886368862120456 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWT--GGNVNVPV--FTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~--g~~~~iPv--y~sv~ea~~~~~~D~avI~VP~~~v 83 (300) .-||+|.|--|||-..--+........+| . +.||-+|.... .+...++. ++.+.+..++..+|+.+|-=..+.+ T Consensus 3 ~MkvLviGsGgREhAia~~l~~s~~~~~v-~-~~pgN~g~~~~~~~~~~~~~~~d~~~i~~~~~~~~idlvivgpe~pL~ 80 (431) T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPLADKI-Y-VAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLV 80 (431) T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTTEEEE-E-EEECCHHHHHCTTCEECCCCTTCHHHHHHHHHHTTEEEEEECSHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEE-E-EECCCHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHHHH T ss_conf 77899989789999999999759898979-9-968972665306654524686699999999998299989989748988 Q ss_pred HHHHHHHHHCCCCE Q ss_conf 78899998539958 Q gi|254781050|r 84 GDAIIESIEAEIPL 97 (300) Q Consensus 84 ~dai~Ea~~agik~ 97 (300) ...+.+.-++|++. T Consensus 81 ~Gl~D~l~~~gi~v 94 (431) T 3mjf_A 81 IGVVDAFRAAGLAI 94 (431) T ss_dssp TTHHHHHHHTTCCE T ss_pred HHHHHHHHHCCCCE T ss_conf 77999997479933 No 194 >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Probab=56.33 E-value=9.7 Score=17.25 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=12.4 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-....|+..+++- +-.| ..++|+.| T Consensus 117 al~~D~ria~~~a~-f~~p-e~~~Gl~p 142 (261) T 3pea_A 117 AMSCHMRFATESAK-LGLP-ELTLGLIP 142 (261) T ss_dssp HHHSSEEEEETTCE-EECC-GGGGTCCC T ss_pred HHCCCEEEECCCCE-EECC-CCCCCCCC T ss_conf 75045599879998-9787-31567686 No 195 >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Probab=56.29 E-value=9.7 Score=17.24 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=17.9 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 78679998054147899999997199 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) .|.--.|.=.|..++.++..+.+.|. T Consensus 174 ~g~~VaIQGfGnVG~~~a~~L~~~Ga 199 (355) T 1c1d_A 174 DGLTVLVQGLGAVGGSLASLAAEAGA 199 (355) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC T ss_conf 68779998134367899988997298 No 196 >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} Probab=56.26 E-value=9.7 Score=17.24 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=28.2 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 9998539958998058846888999999840177189406851013555100020011 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) ...+..--|.+|..-.|...--- ..++-...+|+.-+++. +-.| ..++|+.|. T Consensus 95 ~~~i~~~~kPvIaav~G~a~GgG---~~la~~~D~~ia~~~a~-f~~p-e~~~Gl~P~ 147 (363) T 3bpt_A 95 NNAVGSCQKPYVALIHGITMGGG---VGLSVHGQFRVATEKCL-FAMP-ETAIGLFPD 147 (363) T ss_dssp HHHHHTCSSCEEEEECSEEETHH---HHTTTTSSEEEECTTCE-EECC-GGGTTSCCC T ss_pred HHHHHHCCCCEEEECCCCEEECC---HHHHCCCEEEECCCCCE-EECC-HHCCCCCCC T ss_conf 99999689989980699473512---55520331310389748-9241-322146888 No 197 >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransferase); PLP-binding enzyme, lysine biosynthesis, structural genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis H37RV} Probab=56.04 E-value=9.8 Score=17.22 Aligned_cols=78 Identities=9% Similarity=0.138 Sum_probs=51.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH-----HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCEE Q ss_conf 75314078503578863688621204-----56788999985399589980588------46888999999840177189 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS-----GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~-----~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~ri 124 (300) -|.|....++.+..+....-+.+... .-+++...+++...+.+++.+-+ .+..+.+++.+.|+++++.+ T Consensus 117 ~P~y~~~~~~~~~~G~~~~~v~~~~e~~~~~~d~~~l~~~~~~~~~~i~i~nP~NPTG~~~s~~~~~~l~~~~~~~~~~i 196 (411) T 2o0r_A 117 EPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVV 196 (411) T ss_dssp ESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEE T ss_conf 78872077999981996545655621146678899999728889849997999798761252676402111244532589 Q ss_pred EECCCCEEE Q ss_conf 406851013 Q gi|254781050|r 125 IGPNCPGIL 133 (300) Q Consensus 125 iGPNc~Gii 133 (300) |==.+-... T Consensus 197 i~De~y~~~ 205 (411) T 2o0r_A 197 ITDEVYEHL 205 (411) T ss_dssp EEECTTTTC T ss_pred ECHHHHHHH T ss_conf 431344221 No 198 >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Probab=55.39 E-value=10 Score=17.15 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.5 Q ss_pred CCCCEEEEEC Q ss_conf 3995899805 Q gi|254781050|r 93 AEIPLIVCIT 102 (300) Q Consensus 93 agik~iviit 102 (300) ..++.+|+-. T Consensus 59 ~~v~~vvltg 68 (257) T 1szo_A 59 RENKVVILTG 68 (257) T ss_dssp TTCCEEEEEC T ss_pred CCCEEEEEEC T ss_conf 9954999966 No 199 >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} Probab=55.04 E-value=8.3 Score=17.67 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=24.0 Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 6368862120456788999985399589980588468 Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) .+.+-++|||.+++-+....-..+++..+++ |||. T Consensus 55 ~~~~aVCV~P~~v~~a~~~L~~s~v~v~tVi--gFP~ 89 (239) T 3ngj_A 55 YKFASVCVNPTWVPLCAELLKGTGVKVCTVI--GFPL 89 (239) T ss_dssp HTCSEEEECGGGHHHHHHHHTTSSCEEEEEE--STTT T ss_pred HCCCEEEECHHHHHHHHHHHCCCCCEEEEEE--CCCC T ss_conf 5991999899999999998314694289981--6888 No 200 >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Probab=54.83 E-value=10 Score=17.09 Aligned_cols=52 Identities=25% Similarity=0.207 Sum_probs=26.4 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEC--CC--CCCCCCCHHHHHHHHHC Q ss_conf 7867999805414789999999719951676405--56--74467899999999973 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGI--GG--DPVKGTEFIDVLELFLA 202 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~Vsi--G~--D~~~G~~~~d~L~~~~~ 202 (300) .|.--.|.-.|..++.++..+.+.+-..-..++- |. |+ .|.|..+++++..+ T Consensus 211 ~g~~VaIQG~GnVG~~~a~~L~~~~g~~vVavsD~~G~i~n~-~Gld~~~L~~~~~~ 266 (419) T 1gtm_A 211 KGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNP-DGLNADEVLKWKNE 266 (419) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEE-EEECHHHHHHHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEECC-CCCCHHHHHHHHHH T ss_conf 688899608867999999999873386799953787369878-76677999999997 No 201 >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Probab=54.81 E-value=10 Score=17.09 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=14.0 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 67899999999973998728899970 Q gi|254781050|r 189 KGTEFIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 189 ~G~~~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +|..+.-.+-.=..+|+.+++.+.|- T Consensus 410 mG~~l~~aiga~la~~~~~vv~i~GD 435 (552) T 1ovm_A 410 IGYTLAAAFGAQTACPNRRVIVLTGD 435 (552) T ss_dssp TTHHHHHHHHHHHHCTTSCEEEEEEH T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECC T ss_conf 87634899999985999839999885 No 202 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=54.74 E-value=10 Score=17.08 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=6.4 Q ss_pred HHCCCCEEEEECCC Q ss_conf 85399589980588 Q gi|254781050|r 91 IEAEIPLIVCITEG 104 (300) Q Consensus 91 ~~agik~iviiteG 104 (300) .++|...+-|.||. T Consensus 72 ~e~gA~aiSVlTe~ 85 (247) T 1a53_A 72 MERYAVGLSILTEE 85 (247) T ss_dssp HTTTCSEEEEECCC T ss_pred HHCCCEEEEEECCC T ss_conf 97598289996788 No 203 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=54.63 E-value=10 Score=17.07 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=30.1 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 1797399988884377999999986269818997658 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP 42 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P 42 (300) .+|-||+|-|.||--|+.-+++.++. |.+|.+-... T Consensus 7 ~~~KkILVTGgtGfIGs~L~~~Ll~~-g~~V~~~~r~ 42 (357) T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLT 42 (357) T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECC T ss_conf 79598999689978999999999977-9989999789 No 204 >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} Probab=54.16 E-value=11 Score=17.03 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=12.9 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 84017718940685101355510002001 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ++-....|+..+|+ -+-.| ..++|+.| T Consensus 117 lal~cD~ria~~~a-~f~~p-e~~~G~~p 143 (268) T 3i47_A 117 LAAACDIAIASTSA-RFCFS-EVKLGLIP 143 (268) T ss_dssp HHHHSSEEEEETTC-EEECC-GGGGTCCC T ss_pred HHCCCCEEECCCCC-EEECC-EEEEEECC T ss_conf 11044245627997-99874-24566457 No 205 >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural genomics, PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=53.97 E-value=11 Score=17.01 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 678899998539958998058846888999999840177 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) ..+.+.+|.++||+.+++++.. ..+..+.+++++++. T Consensus 18 ~~~vi~~a~~~gv~~ii~~~~~--~~~~~~~~~l~~~~~ 54 (265) T 2gzx_A 18 LSEVITRAREAGVDRMFVVGFN--KSTIERAMKLIDEYD 54 (265) T ss_dssp HHHHHHHHHHTTCCEEEEEECS--HHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC T ss_conf 9999999998799889992589--999999999996588 No 206 >1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.124.1.5 Probab=53.63 E-value=11 Score=16.97 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=64.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECCCCEEECCCCHHCCEECCC-CC Q ss_conf 36886212045678899998539958998058846888999999840177--1894068510135551000200112-35 Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS--SRLIGPNCPGILTPDSCKIGIMPGS-IF 148 (300) Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g--~riiGPNc~Gii~p~~~~lgi~p~~-~~ 148 (300) |.-+.+-....+...+..|.++|-+.-|+++|.-|..+-.++.....+.| +.+|-.|+.+.+.+. +..-++.+. ++ T Consensus 111 ~~IlT~~~S~tv~~~l~~a~~~g~~~~V~v~EsrP~~~G~~lA~eL~~~Gi~vtlI~D~a~~~~m~~-~d~VlvGAd~i~ 189 (276) T 1vb5_A 111 DVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQMGLFCRE-ASIAIVGADMIT 189 (276) T ss_dssp EEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTT-CSEEEECCSEEC T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHH-CCEEEEEEEEEE T ss_conf 9899979808999999999987995799994489775409999999875998089647899998530-787998524895 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 778679998054147899999997199516764 Q gi|254781050|r 149 RKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV 181 (300) Q Consensus 149 ~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V 181 (300) .-| ++++++||.... ..+...++-|.-+. T Consensus 190 ~nG--~v~nkiGT~~lA--~~Ak~~~iPvyV~a 218 (276) T 1vb5_A 190 KDG--YVVNKAGTYLLA--LACHENAIPFYVAA 218 (276) T ss_dssp TTS--CEEEETTHHHHH--HHHHHTTCCEEEEC T ss_pred CCC--CEEEHHHHHHHH--HHHHHCCCCEEEEC T ss_conf 489--886523079999--99985699869970 No 207 >2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2 Probab=53.43 E-value=8.3 Score=17.70 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=25.1 Q ss_pred EEEECCHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 886212045678899998539-9589980588468889999998401771894 Q gi|254781050|r 74 SVIYVPPSGAGDAIIESIEAE-IPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 74 avI~VP~~~v~dai~Ea~~ag-ik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .++.+|..- .|.++.|++.+ ++ .+|+|.|.+..+ ++++.|++.|+-+| T Consensus 54 ~lvi~~gdR-~di~l~al~~~~~a-~lIlTg~~~p~~--~vl~la~~~gipvi 102 (139) T 2ioj_A 54 AALVTGGDR-SDLLLTALEMPNVR-CLILTGNLEPVQ--LVLTKAEERGVPVI 102 (139) T ss_dssp EEEEEETTC-HHHHHHHTTCTTEE-EEEEETTCCCCH--HHHHHHHHHTCCEE T ss_pred EEEEEECCC-HHHHHHHHHCCCCE-EEEEECCCCCCH--HHHHHHHHCCCCEE T ss_conf 289995893-78999998578963-999939999789--99999987699489 No 208 >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} Probab=53.42 E-value=11 Score=16.95 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=23.7 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 99998539958998058846888999999840177189406851013555100020011 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) +...+..--+.+|..-.|...-.-.+ ++-....|+-.+++- +--| ..++|+.|. T Consensus 86 l~~~l~~~~kP~Iaav~G~a~GgG~~---lal~~D~~ia~~~a~-f~~p-e~~~Gi~p~ 139 (257) T 2ej5_A 86 MMKALHHLEKPVVAAVNGAAAGAGMS---LALACDFRLLSEKAS-FAPA-FIHVGLVPD 139 (257) T ss_dssp HHHHHHHCCSCEEEEECSEEETHHHH---HHHHSSEEEEETTCE-EECC-GGGGTCCCC T ss_pred HHHHHHCCCCCEEEEECCEEEHHHHH---HHHHCCEEEECCCCE-EECH-HHCCCCCCC T ss_conf 99987536995999978846468899---998506898368878-9834-326186886 No 209 >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* Probab=53.33 E-value=5 Score=19.08 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=71.9 Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH------HHHHHHHHHHCCCCEE--EECCCCE Q ss_conf 4078503578863688621204567889999853995899805884688------8999999840177189--4068510 Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL------DMVRVKARLEKSSSRL--IGPNCPG 131 (300) Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~------d~~~l~~~A~~~g~ri--iGPNc~G 131 (300) +.+.+|.+ .+.+-++|||.+++-+....-..+++...+| |||.- -..+.. .|-+.|..= +=+|- | T Consensus 23 ~~~~~A~~---~~~~aVCV~P~~v~~a~~~l~~s~v~v~tVi--gFP~G~~~~~~K~~Ea~-~Ai~~GAdEID~V~n~-~ 95 (220) T 1ub3_A 23 KAAEEALE---YGFYGLCIPPSYVAWVRARYPHAPFRLVTVV--GFPLGYQEKEVKALEAA-LACARGADEVDMVLHL-G 95 (220) T ss_dssp HHHHHHHH---HTCSEEECCGGGHHHHHHHCTTCSSEEEEEE--STTTCCSCHHHHHHHHH-HHHHTTCSEEEEECCH-H T ss_pred HHHHHHHH---HCCCEEEECHHHHHHHHHHHCCCCCCEEEEE--CCCCCCCCHHHHHHHHH-HHHHCCCCEEEEEECC-H T ss_conf 99999998---6994899899999999998427998468881--68988887999999999-9998799889998520-4 Q ss_pred EECCCCHHC--C-EEC-CCCCCCCCEEEEEECCCHHHHHHHHH----HHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCC Q ss_conf 135551000--2-001-12357786799980541478999999----971995167640556744678999999999739 Q gi|254781050|r 132 ILTPDSCKI--G-IMP-GSIFRKGSVGILSRSGTLTYEAVFQT----SQEGLGQSTAVGIGGDPVKGTEFIDVLELFLAD 203 (300) Q Consensus 132 ii~p~~~~l--g-i~p-~~~~~pG~VgivSqSG~l~~e~~~~~----~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~D 203 (300) .+..+.... . +.. ......-.+=+|=-.+-|+.+-...+ ...|.-|= --|+|-.+ .|.+..|+--+.+.- T Consensus 96 ~~~~g~~~~v~~ei~~v~~a~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfV-KTSTG~~~-~gat~e~v~~m~~~~ 173 (220) T 1ub3_A 96 RAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFL-KTSTGFGP-RGASLEDVALLVRVA 173 (220) T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEE-ECCCSSSS-CCCCHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHE-EECCCCCC-CCCCHHHHHHHHHHH T ss_conf 6654788899999999986268985999962263899999999999998185025-85588788-998899999999996 Q ss_pred CCCCEEEEEEECCCHHH-HHHHHHHHH Q ss_conf 98728899970587248-999999998 Q gi|254781050|r 204 EATESIVMVGEIGGSAE-EEAAQFLKD 229 (300) Q Consensus 204 p~T~~Ivl~gEiGG~~E-~~aa~fi~~ 229 (300) +..-.|=. -||... +++.+|+.+ T Consensus 174 ~~~~~iKa---sGGIrt~~~a~~~l~a 197 (220) T 1ub3_A 174 QGRAQVKA---AGGIRDRETALRMLKA 197 (220) T ss_dssp TTSSEEEE---ESSCCSHHHHHHHHHT T ss_pred CCCCEEEC---CCCCCCHHHHHHHHHH T ss_conf 78843876---3798999999999997 No 210 >1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.1.10.1 Probab=52.99 E-value=9.6 Score=17.27 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=20.3 Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 6368862120456788999985399589980588468 Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) .+.+-++|||.+++.+....-..+++...+| |||. T Consensus 71 ~~~~aVCV~P~~v~~a~~~L~gs~v~v~tVi--gFP~ 105 (260) T 1o0y_A 71 NRFHGVCVNPCYVKLAREELEGTDVKVVTVV--GFPL 105 (260) T ss_dssp HTCSEEEECGGGHHHHHHHHTTSCCEEEEEE--STTT T ss_pred CCCCEEEECHHHHHHHHHHHCCCCCEEEEEE--CCCC T ss_conf 5982899899999999998158983489984--0798 No 211 >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Probab=52.54 E-value=9.3 Score=17.38 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=8.2 Q ss_pred HHHHHHHCCCCCCEEEEEEE Q ss_conf 99999973998728899970 Q gi|254781050|r 195 DVLELFLADEATESIVMVGE 214 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.|+.++.|++.++|++-++ T Consensus 46 ~~l~~~~~d~~~~~vvl~g~ 65 (258) T 3lao_A 46 LAMGEYERSEESRCAVLFAH 65 (258) T ss_dssp HHHHHHHHCTTCCEEEEEES T ss_pred HHHHHHHHCCCCEEEEEECC T ss_conf 99999973999659999779 No 212 >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Probab=52.52 E-value=11 Score=16.86 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=60.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHH Q ss_conf 973999888843779999999862--698189976589988687277457753140785035788636886212045678 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGD 85 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~d 85 (300) .=||-|-|.||--|.--.+....- --..+..-.+....|+.+.-...++.+ .+..+. +..++|+...+.|.....+ T Consensus 3 ~~kVaIvGasGy~G~EL~rlL~~H~~p~~~l~~~as~~saGk~~~~~~~~~~~-~~~~~~-~~~~~D~vf~alp~~~s~~ 80 (336) T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRV-QNVEEF-DWSQVHIALFSAGGELSAK 80 (336) T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEE-EEGGGC-CGGGCSEEEECSCHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEECCCEEEE-ECCCHH-HHCCCCEEECCCCCHHHHH T ss_conf 66699999862999999999971999850499998788799721378956478-435521-0101643202688515799 Q ss_pred HHHHHHHCCCCEEEEECC Q ss_conf 899998539958998058 Q gi|254781050|r 86 AIIESIEAEIPLIVCITE 103 (300) Q Consensus 86 ai~Ea~~agik~iviite 103 (300) .+.+..++|++. +=.+. T Consensus 81 ~~~~~~~~~~~v-iDls~ 97 (336) T 2r00_A 81 WAPIAAEAGVVV-IDNTS 97 (336) T ss_dssp HHHHHHHTTCEE-EECSS T ss_pred HHHHHHHCCCEE-EECCH T ss_conf 999998689789-97863 No 213 >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Probab=52.43 E-value=11 Score=16.85 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=57.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEECC--CC---CCCCCCC---CHHHHCC---CCCCCEEEE Q ss_conf 73999888843779999999862698189976-58998868727--74---5775314---0785035---788636886 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGI-HPKKGSTYWTG--GN---VNVPVFT---TVAEAKE---RTAANASVI 76 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV-~Pgkgg~~~~g--~~---~~iPvy~---sv~ea~~---~~~~D~avI 76 (300) -||-|-|.||--|.--.+.+.+.-.-+|+.-. +....|+.+.. +. ..+|.+. .+.|+.+ ..++|+.+. T Consensus 20 ~kv~IvGasGyvG~eLlrlL~~HP~~ei~~l~aS~~saGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvFl 99 (381) T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFS 99 (381) T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEEE T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEECCHHHCHHCCCEEEE T ss_conf 27999997019999999999749997068998647558964344066534313555665405884541104001778996 Q ss_pred ECCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 21204567889999853995899805 Q gi|254781050|r 77 YVPPSGAGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~agik~iviit 102 (300) +.|.....+.+.+..++|.+.+..-+ T Consensus 100 alP~~~s~~~~~~~~~~g~~vID~Ss 125 (381) T 3hsk_A 100 GLDADVAGDIEKSFVEAGLAVVSNAK 125 (381) T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCS T ss_pred CCCCHHHHHHHHHHHHCCCEEECCHH T ss_conf 48826788887877637955522556 No 214 >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Probab=52.17 E-value=11 Score=16.82 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=47.8 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-CCCC----EE-ECCCCCCCCCC-CCHHHHCCCCCCCEEEEECCH-- Q ss_conf 399988884377999999986269818997658-9988----68-72774577531-407850357886368862120-- Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-KKGS----TY-WTGGNVNVPVF-TTVAEAKERTAANASVIYVPP-- 80 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-gkgg----~~-~~g~~~~iPvy-~sv~ea~~~~~~D~avI~VP~-- 80 (300) ||+|-|-||..|+.-.+..++- |-+|.+-+.. .|-. -. +.+ ++... ..+.++.. ++|..+...+. T Consensus 2 kVlVtGatG~iG~~lv~~Ll~~-g~~V~~~~R~~~~~~~~~~~~~~~~---d~~~~~~~l~~~~~--~~d~Vi~~~~~~~ 75 (219) T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVEQVPQYNNVKAVHF---DVDWTPEEMAKQLH--GMDAIINVSGSGG 75 (219) T ss_dssp EEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGGGSCCCTTEEEEEC---CTTSCHHHHHTTTT--TCSEEEECCCCTT T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCCCCC---CCCCCHHHHHHHHC--CCEEEEEEECCCC T ss_conf 3999999998999999999978-3989999888788244315520000---01120122334305--8607998610123 Q ss_pred --------HHHHHHHHHHHHCCCCEEEEEC Q ss_conf --------4567889999853995899805 Q gi|254781050|r 81 --------SGAGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 81 --------~~v~dai~Ea~~agik~iviit 102 (300) ......+.-|.+++++.++.++ T Consensus 76 ~~~~~~~~~~~~~~~~aa~~~~v~~~i~iS 105 (219) T 3dqp_A 76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLS 105 (219) T ss_dssp SSCCCCCCHHHHHHHHHHHHTTCCEEEEEC T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 323232121016899987743666099997 No 215 >3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str} Probab=51.78 E-value=11 Score=16.79 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.6 Q ss_pred CCCCEEEEEC Q ss_conf 3995899805 Q gi|254781050|r 93 AEIPLIVCIT 102 (300) Q Consensus 93 agik~iviit 102 (300) ..++.+|+-. T Consensus 66 ~~v~~vVltg 75 (282) T 3ome_A 66 NEVKVIILRA 75 (282) T ss_dssp TTCCEEEEEE T ss_pred CCEEEEEEEC T ss_conf 8917999826 No 216 >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Probab=51.71 E-value=12 Score=16.78 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=15.2 Q ss_pred CCCCEEEEEE-CCCHHHHHHHHHHHCCC Q ss_conf 7786799980-54147899999997199 Q gi|254781050|r 149 RKGSVGILSR-SGTLTYEAVFQTSQEGL 175 (300) Q Consensus 149 ~pG~VgivSq-SG~l~~e~~~~~~~~g~ 175 (300) +||.--+|.- +|+++..++..+...|. T Consensus 139 ~~g~~vlV~Ga~g~vG~~a~qla~~~G~ 166 (327) T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGA 166 (327) T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC T ss_conf 9989999989953999999999998599 No 217 >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Probab=50.91 E-value=12 Score=16.70 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=29.3 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 99998539958998058846888999999840177189406851013555100020011 Q gi|254781050|r 87 IIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 87 i~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) +...+..--+.+|.--.|...-.-.+ ++-...+|+..+++. +..| ..++|+.|. T Consensus 88 ~~~~i~~~~kPvIaav~G~a~GgG~~---lala~D~ria~~~a~-f~~p-e~~~G~~~~ 141 (261) T 1ef8_A 88 ITRMIQKFPKPIISMVEGSVWGGAFE---MIMSSDLIIAASTST-FSMT-PVNLGVPYN 141 (261) T ss_dssp HHHHHHHCSSCEEEEECSEEETHHHH---HHHHSSEEEEETTCE-EECC-HHHHTCCCC T ss_pred HHHHHHHCCCCEEEEECCEEEEEEEH---HHHHHHHCCCCCCCC-CCCC-CCCCCCCCC T ss_conf 99999977998899977488640102---445344400000012-3584-000123556 No 218 >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Probab=50.89 E-value=12 Score=16.70 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=32.5 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 8636886212045678899998539958998058846888999999840177189 Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) ..|+-+..-.|... +.+..++|...+.+..|-... +..++.+..+++|++. T Consensus 59 ~~dvHLMv~~P~~~---i~~~~~~ga~~i~~H~Ea~~~-~~~~~i~~i~~~g~~~ 109 (231) T 3ctl_A 59 PLDCHLMVTRPQDY---IAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKV 109 (231) T ss_dssp CEEEEEESSCGGGT---HHHHHHHTCSEEEECGGGCTT-THHHHHHHHHHTTCEE T ss_pred CEEEEEEECCHHHH---HHHHHHCCCCEEEEEHHHHCC-CHHHHHHHHHHCCCEE T ss_conf 55899996688899---999986699879963254303-5999999999779879 No 219 >2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus} Probab=50.80 E-value=12 Score=16.69 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=14.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCE Q ss_conf 7399988884377999999986269818 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQV 36 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~i 36 (300) +||-|.|. |..|+-.+..+... |-.| T Consensus 302 ~~v~ViGa-G~MG~gIA~~~a~~-G~~V 327 (727) T 2x58_A 302 SSVGVLGL-GTMGRGIAISFARV-GISV 327 (727) T ss_dssp CEEEEECC-SHHHHHHHHHHHTT-TCEE T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCCC T ss_conf 57999951-78899999999866-9950 No 220 >3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A Probab=50.66 E-value=12 Score=16.67 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=63.7 Q ss_pred CCCCCCCCHHHH--CCCCCCCEEEEECCH---H--HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 577531407850--357886368862120---4--567889999853995899805-88468889999998401771894 Q gi|254781050|r 54 VNVPVFTTVAEA--KERTAANASVIYVPP---S--GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 54 ~~iPvy~sv~ea--~~~~~~D~avI~VP~---~--~v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~rii 125 (300) .-+|-|.-++-+ +.. ..+-.+|+-- . .-++.+.+++....|+++++- -|.| .|+.++.++|+++|+.|| T Consensus 113 Vivp~~t~~at~~ai~~--~Ga~pvf~Did~~t~~id~~~le~~it~ktkaIi~vh~~G~~-~d~~~i~~ia~~~~i~vI 189 (437) T 3bb8_A 113 VITVAAGFPTTVNPTIQ--NGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNL-FDLAEVRRVADKYNLWLI 189 (437) T ss_dssp EEECSSSCHHHHHHHHH--TTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEECGGGCC-CCHHHHHHHHHHHTCEEE T ss_pred EEECCCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHHHHHCCCCEE T ss_conf 99859647999999998--599899930456643221899998724697389984577763-334899999998598178 Q ss_pred ECCCCEEECCC-CHHCCE---------ECCCCCCCCCEEEEEECCCHHHHHHHHHHHCC Q ss_conf 06851013555-100020---------01123577867999805414789999999719 Q gi|254781050|r 126 GPNCPGILTPD-SCKIGI---------MPGSIFRKGSVGILSRSGTLTYEAVFQTSQEG 174 (300) Q Consensus 126 GPNc~Gii~p~-~~~lgi---------~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g 174 (300) ==.|..+-+.- ..++|. .+.+...-|.=|++.-.-.-.++.+..+...| T Consensus 190 EDaA~a~ga~~~g~~~Gs~gd~s~fSF~~~K~ittgeGG~i~tnd~~l~~~~~~~~~~g 248 (437) T 3bb8_A 190 EDCCDALGSTYDGKMAGTFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWG 248 (437) T ss_dssp EECTTCTTCEETTEETTSSSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHBTT T ss_pred ECCHHHHCCEECCEEECCCCCEEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHC T ss_conf 25615316726988703676635686877642456877322148999999999999848 No 221 >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoreductase, structural genomics consortium; HET: NAP; 2.30A {Plasmodium falciparum 3D7} Probab=50.39 E-value=12 Score=16.65 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=71.7 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHH Q ss_conf 79739998888437799999998626---981899765899886872774577531407850357886368862120456 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYC---QTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGA 83 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~---gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v 83 (300) +|-|+-+.|. |+-|+--.+-....+ ..++. -.+|.+. ...+-+.++..|++++ .|+-+++|+|..+ T Consensus 3 ~~MkIgfIG~-G~Mg~Ai~~gl~~~~~~~~~~i~-~~~~~~~-------~~~~~~~~~~~~~~~~--~dvIiLaVkP~~~ 71 (262) T 2rcy_A 3 ENIKLGFMGL-GQMGSALAHGIANANIIKKENLF-YYGPSKK-------NTTLNYMSSNEELARH--CDIIVCAVKPDIA 71 (262) T ss_dssp SSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEE-EECSSCC-------SSSSEECSCHHHHHHH--CSEEEECSCTTTH T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCCHHHEE-EECCCHH-------HCCCEEECCHHHHHHH--CCCEECCCCCCCH T ss_conf 8888999886-89999999999977999856568-8687746-------4387455678999861--8756316797521 Q ss_pred HHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 788999985-3995899805884688899999984017718940685101 Q gi|254781050|r 84 GDAIIESIE-AEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 84 ~dai~Ea~~-agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) .++..|..+ ..=+.+|-+..|++..+..++.. ....+--+=||.+-- T Consensus 72 ~~vl~~i~~~~~~~~vISi~AGi~~~~l~~~l~--~~~~ivR~MPN~~~~ 119 (262) T 2rcy_A 72 GSVLNNIKPYLSSKLLISICGGLNIGKLEEMVG--SENKIVWVMPNTPCL 119 (262) T ss_dssp HHHHHHSGGGCTTCEEEECCSSCCHHHHHHHHC--TTSEEEEEECCGGGG T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCC--CCCCCEEECCCHHHH T ss_conf 232377775403415887336543999984113--433000425656788 No 222 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Probab=50.17 E-value=11 Score=17.02 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=52.2 Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCEE--E--CCCCCCCCCCC------------CHHHHCC Q ss_conf 7179739998888437799999998626981899765-8998868--7--27745775314------------0785035 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH-PKKGSTY--W--TGGNVNVPVFT------------TVAEAKE 67 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~-Pgkgg~~--~--~g~~~~iPvy~------------sv~ea~~ 67 (300) +.++-|+++-| |...+....+..++. |-+|++=+| |-|-+.. + .-...++|||. .+.+..+ T Consensus 19 ~~~~mkIvf~G-~~~f~~~~l~~L~~~-~~~i~~V~T~pdk~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~e~~~~l~ 96 (329) T 2bw0_A 19 YFQSMKIAVIG-QSLFGQEVYCHLRKE-GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQ 96 (329) T ss_dssp --CCCEEEEEC-CHHHHHHHHHHHHHT-TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHH T ss_pred HHHCCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHH T ss_conf 32230899996-979999999999988-8978999908998889896999999819988644336761204899999999 Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 788636886212045678899998539958998058846 Q gi|254781050|r 68 RTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIP 106 (300) Q Consensus 68 ~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip 106 (300) ..++|+.|++.=....++.+++....| .+-+-.+-.| T Consensus 97 ~~~~Dl~v~~~~~~iip~~il~~~~~g--~iN~HpSlLP 133 (329) T 2bw0_A 97 ALGAELNVLPFCSQFIPMEIISAPRHG--SIIYHPSLLP 133 (329) T ss_dssp TTCCSEEEESSCSSCCCHHHHTCSTTC--EEEEESSCTT T ss_pred HHCCCEEEEECCHHHCCHHHHHCCCCC--EEEEECCCCC T ss_conf 629699999061243779886347898--8999478886 No 223 >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 Probab=50.02 E-value=9.5 Score=17.32 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=29.6 Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 407850357886368862120456788999985399589980588468 Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) +-+.||.+ .+.+-++|||.+++.+....-..+++...+| |||. T Consensus 40 ~lc~~A~~---~~~~avcV~p~~v~~a~~~l~~s~vkv~tVi--gFP~ 82 (234) T 1n7k_A 40 NLVREASD---YGFRCAVLTPVYTVKISGLAEKLGVKLCSVI--GFPL 82 (234) T ss_dssp HHHHHHHH---HTCSEEEECHHHHHHHHHHHHHHTCCEEEEE--STTT T ss_pred HHHHHHHH---HCCCEEEECHHHHHHHHHHHCCCCCEEEEEE--CCCC T ss_conf 99999998---4991899895879999998347996489984--4899 No 224 >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, ATP, protein turnover, ligase, conformational change, thioester, adenylation, transthioesterification, ATP-binding; 2.70A {Saccharomyces cerevisiae} Probab=49.80 E-value=12 Score=16.59 Aligned_cols=120 Identities=15% Similarity=0.241 Sum_probs=69.9 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC------CEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 797399988884377999999986269818997658998------868727-7457753140785035788636886212 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG------STYWTG-GNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg------g~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) .+++|++-|.+| -|+--++....- |-.=+.-+-+.+- .+++.. +.++-|-=..+.+...+-.+++.+-++. T Consensus 26 ~~s~VliiG~~g-lG~Ei~KNLvL~-GVg~itI~D~~~v~~~Dl~~nFfl~~~diGk~RA~a~~~~L~eLNp~V~v~~~~ 103 (1015) T 3cmm_A 26 QTSNVLILGLKG-LGVEIAKNVVLA-GVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLD 103 (1015) T ss_dssp TTCEEEEECCSH-HHHHHHHHHHHH-CCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECC T ss_pred HHCEEEEECCCH-HHHHHHHHHHCC-CCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEC T ss_conf 869599999868-699999984105-897599982990888886767577867759819999999999858998289954 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEC Q ss_conf 0456788999985399589980588468889999998401771894068510135 Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILT 134 (300) Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~ 134 (300) ...-. |-. ..-. +||.|+-.|.....++-++||++++.+|--+|.|++- T Consensus 104 ~~~~~----~~~-~~f~-vVV~t~~~~~~~~~~ln~~cr~~~i~fI~~~t~G~~G 152 (1015) T 3cmm_A 104 SLDDV----TQL-SQFQ-VVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015) T ss_dssp CCCCS----TTG-GGCS-EEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEE T ss_pred CCCCH----HHH-CCCC-EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEE T ss_conf 89988----887-0889-8999089999999999999998199889996000899 No 225 >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Probab=49.35 E-value=13 Score=16.54 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=12.5 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-....|+.-+..--+-.| ..++|+.| T Consensus 122 al~cD~~iaa~e~a~f~~p-e~~~Gl~p 148 (289) T 3h0u_A 122 LLACDMRFASRENAILGQP-EVGIGAPP 148 (289) T ss_dssp HHHSSEEEEETTTCEEECT-HHHHTSCC T ss_pred HHHCCEEEECCCCCEEECC-CCCCCCCC T ss_conf 7717713563588615366-44652588 No 226 >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Probab=49.27 E-value=7.9 Score=17.83 Aligned_cols=115 Identities=19% Similarity=0.144 Sum_probs=61.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC--------CCCE--EEC-CC--CCCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 3999888843779999999862698189976589--------9886--872-77--457753140785035788636886 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPK--------KGST--YWT-GG--NVNVPVFTTVAEAKERTAANASVI 76 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pg--------kgg~--~~~-g~--~~~iPvy~sv~ea~~~~~~D~avI 76 (300) ||.|.|- |..|+..+...-+- |.+|.- .... +.+. .+. +- ..+|-+-+++.|+.+ ++|+-++ T Consensus 17 KI~ViGa-G~~Gtala~~La~~-g~~V~l-~~~~~~~~~~i~~~~~n~~~l~~~~l~~~i~~t~dl~~~~~--~adiii~ 91 (366) T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKK-CREVCV-WHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN--GAEIILF 91 (366) T ss_dssp EEEEECC-SHHHHHHHHHHTTT-EEEEEE-ECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT--TCSSEEE T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHC--CCCHHHH T ss_conf 6999898-99999999999978-996899-96299999999845998656899969987188768999860--8760102 Q ss_pred ECCHHHHHHHHHHHHH-------CCCCEEEEECCCCCHHHHHHHHHHHHC----C-CCEEEECCC Q ss_conf 2120456788999985-------399589980588468889999998401----7-718940685 Q gi|254781050|r 77 YVPPSGAGDAIIESIE-------AEIPLIVCITEGIPVLDMVRVKARLEK----S-SSRLIGPNC 129 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~-------agik~iviiteGip~~d~~~l~~~A~~----~-g~riiGPNc 129 (300) +||.++..+++.+... ..-..++..+-|+.......+.+..++ . -.-+-|||. T Consensus 92 avps~~~~~~l~~i~~~l~~~~~~~~~~ii~~~KGl~~~~~~~~s~~~~~~~~~~~~~~lsGP~~ 156 (366) T 1evy_A 92 VIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSF 156 (366) T ss_dssp CCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCC T ss_pred CCCHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCEEEECCCCC T ss_conf 37699999999986432211221567532678800836988652177897679875067438863 No 227 >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Probab=49.12 E-value=13 Score=16.52 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=37.1 Q ss_pred CCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 1407850357886368862120456788999985399589980588468-88999999840177189406 Q gi|254781050|r 59 FTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV-LDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 59 y~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~-~d~~~l~~~A~~~g~riiGP 127 (300) .+.+..|.+ .++++.-..+.+...+++.+|.+.||+.-+++.+.-.. .......+..+..|+.+--. T Consensus 20 ~~~I~~A~~--~I~i~~y~~~~~~i~~aL~~a~~rGV~Vrvl~d~~~~~~~~~~~~~~~l~~~gi~v~~~ 87 (155) T 1byr_A 20 LSAIDSAKT--SIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTD 87 (155) T ss_dssp HHHHHHCSS--EEEEEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEE T ss_pred HHHHHHHCC--EEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCC T ss_conf 999996072--99999984278899999999998599399999723753203399999998458874223 No 228 >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Probab=48.81 E-value=13 Score=16.49 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=12.9 Q ss_pred HHCCC--EECCCHHHHHHHHHHHH Q ss_conf 98897--57889899999999998 Q gi|254781050|r 276 KEAGI--CIAPSPARIGRSLVELL 297 (300) Q Consensus 276 ~~aGv--~v~~s~~el~~~l~~~l 297 (300) +..|+ ..+++++||.+.+++.+ T Consensus 543 ~a~G~~~~~v~~~~eL~~al~~a~ 566 (604) T 2x7j_A 543 ALYGGTYSCPASWDEFKTAYAPQA 566 (604) T ss_dssp HHTTCEEECCSSHHHHHHHCCCCC T ss_pred HHCCCEEEEECCHHHHHHHHHHHH T ss_conf 978997999699999999999998 No 229 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=48.04 E-value=13 Score=16.42 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=31.4 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 17973999888843779999999862698189976589 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPK 43 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pg 43 (300) ++.+||+|-|.||..|+.-++..++. |-+|.+-+.+. T Consensus 2 ~~k~KILVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~ 38 (313) T 1qyd_A 2 DKKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPE 38 (313) T ss_dssp CCCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC T ss_conf 89998999899848999999999978-89699998997 No 230 >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* Probab=47.81 E-value=7.8 Score=17.85 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=40.8 Q ss_pred CCEEEEECCHHHHHHHHHHHH-HCCCCEEEEEC---CCC----------------CHHHH-HHHHHHHHCCCCEE Q ss_conf 636886212045678899998-53995899805---884----------------68889-99999840177189 Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESI-EAEIPLIVCIT---EGI----------------PVLDM-VRVKARLEKSSSRL 124 (300) Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~-~agik~iviit---eGi----------------p~~d~-~~l~~~A~~~g~ri 124 (300) -|++=.|-|..|=++.-.+++ ++|.|-+|+.| +|| |-+|. .++.+.||+.|+++ T Consensus 94 ~~~~~~Fnp~~fda~~W~~~ak~AGaky~vlTaKHHDGF~lwdSk~t~~n~~~~~~krDiv~el~~A~rk~Glk~ 168 (455) T 2zxd_A 94 EKFADLFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF 168 (455) T ss_dssp GGHHHHCCCTTCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE T ss_pred HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE T ss_conf 788642696218999999999984997699767733774236899999877688989737999999998669848 No 231 >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Probab=47.33 E-value=13 Score=16.35 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=55.1 Q ss_pred CCCCCHHHHCCC----CCCCEEEEECCHHHHH----HHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHCCCCEEE Q ss_conf 531407850357----8863688621204567----889999853995899805884688---89999998401771894 Q gi|254781050|r 57 PVFTTVAEAKER----TAANASVIYVPPSGAG----DAIIESIEAEIPLIVCITEGIPVL---DMVRVKARLEKSSSRLI 125 (300) Q Consensus 57 Pvy~sv~ea~~~----~~~D~avI~VP~~~v~----dai~Ea~~agik~iviiteGip~~---d~~~l~~~A~~~g~rii 125 (300) -.|.||.||..+ .++++.+.++.+.... +-..+.+ +++..+ ++.-||+.+ .+....++||+.++-.+ T Consensus 23 DaY~Si~eAL~haa~~~~~~v~i~wi~se~le~~~~~~~~~~L-~~~dGI-lvpgGFG~RG~eGkI~Ai~yARen~iPfL 100 (273) T 2w7t_A 23 DTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL-LGCDGI-FVPGGFGNRGVDGKCAAAQVARMNNIPYF 100 (273) T ss_dssp TTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH-HTCSEE-EECCCCTTTTHHHHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCHHHHHHHH-CCCCCE-EECCCCCCCCHHHHHHHHHHHHHCCCCCH T ss_conf 3899899999974887198368999873342476777899874-257746-85885787764789999999997488602 Q ss_pred ECCCCEEE Q ss_conf 06851013 Q gi|254781050|r 126 GPNCPGIL 133 (300) Q Consensus 126 GPNc~Gii 133 (300) |= |+|+- T Consensus 101 GI-ClGmQ 107 (273) T 2w7t_A 101 GV-XLGMQ 107 (273) T ss_dssp EE-THHHH T ss_pred HH-HHHHH T ss_conf 45-56679 No 232 >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE NDP; 1.70A {Ralstonia eutropha JMP134} Probab=45.77 E-value=14 Score=16.19 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=15.8 Q ss_pred CCCCEEEEEE-CCCHHHHHHHHHHHCCC Q ss_conf 7786799980-54147899999997199 Q gi|254781050|r 149 RKGSVGILSR-SGTLTYEAVFQTSQEGL 175 (300) Q Consensus 149 ~pG~VgivSq-SG~l~~e~~~~~~~~g~ 175 (300) ++|..-+|.- +|.++..++.++...|. T Consensus 170 ~~g~~vlv~g~~G~vG~~~iq~ak~~G~ 197 (379) T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGI 197 (379) T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTC T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHCCC T ss_conf 8997667611577400899999998799 No 233 >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Probab=45.74 E-value=14 Score=16.19 Aligned_cols=112 Identities=12% Similarity=0.167 Sum_probs=64.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEE-EEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 73999888843779999999862698189-97658998868727745775314078503578863688621204567889 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVV-GGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~iv-agV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) =|+.+.|. |+-|+--..-...- +.+++ ..-++.|--. +. +...+....+..|++++ .|+-++.|+|+.+.++. T Consensus 4 MkIg~IG~-G~mg~ai~~gl~~~-~~~i~v~~r~~~~~~~-l~-~~~~~~~~~~~~e~~~~--~Dvi~LavkP~~~~~vl 77 (259) T 2ahr_A 4 MKIGIIGV-GKMASAIIKGLKQT-PHELIISGSSLERSKE-IA-EQLALPYAMSHQDLIDQ--VDLVILGIKPQLFETVL 77 (259) T ss_dssp CEEEEECC-SHHHHHHHHHHTTS-SCEEEEECSSHHHHHH-HH-HHHTCCBCSSHHHHHHT--CSEEEECSCGGGHHHHH T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCHHHHHH-HH-HHCCCEEECCHHHHHHH--CCCEEECCCCHHHHHHH T ss_conf 88999888-49999999999849-9849997899999999-99-98099076778999974--76356269971578774 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 9998539958998058846888999999840177189406851 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCP 130 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300) .+ ... -+.+|-+..|++..+..++. .....+--+=||.+ T Consensus 78 ~~-~~~-~~~vISi~Agv~~~~l~~~~--~~~~~ivR~mPn~~ 116 (259) T 2ahr_A 78 KP-LHF-KQPIISMAAGISLQRLATFV--GQDLPLLRIMPNMN 116 (259) T ss_dssp TT-SCC-CSCEEECCTTCCHHHHHHHH--CTTSCEEEEECCGG T ss_pred HH-HCC-CCEEEEECCCCCHHHHHHHC--CCCCCEEEECCCCC T ss_conf 34-125-64599940543479999872--88887699726775 No 234 >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} Probab=45.60 E-value=14 Score=16.18 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=10.6 Q ss_pred HHHHHHHHCCCCCCEEEEEEE Q ss_conf 999999973998728899970 Q gi|254781050|r 194 IDVLELFLADEATESIVMVGE 214 (300) Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gE 214 (300) .+.|+.+++||+.++|++-++ T Consensus 50 ~~al~~~~~d~~v~~vVitg~ 70 (279) T 3g64_A 50 RDLLAELSRRRAVRALVLAGE 70 (279) T ss_dssp HHHHHHHHHTTCCSEEEEEEC T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999960999579999479 No 235 >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Probab=45.25 E-value=14 Score=16.14 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=12.1 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-...+|+..+|+- +-.| ..++|+.| T Consensus 121 al~~D~ria~~~a~-f~~p-e~~~Gl~p 146 (265) T 3kqf_A 121 SLACDFRIAAESAS-LGLT-ETTLAIIP 146 (265) T ss_dssp HHHSSEEEEETTCE-EECC-GGGGTCCC T ss_pred HHHCCEEEECCCCE-EECC-CCCCCCCC T ss_conf 87378899769988-9886-44872088 No 236 >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Probab=45.21 E-value=15 Score=16.14 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=34.8 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCC Q ss_conf 75314078503578863688621204567889999853-9958998058846 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEA-EIPLIVCITEGIP 106 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~a-gik~iviiteGip 106 (300) +.+.++..++.+ ++|+-+++||..+..+++.+.... .-+.+++++-|+. T Consensus 59 i~~~~~l~~~~~--~ad~iiiavps~~~~~~l~~i~~~~~~~~ii~~~kg~~ 108 (335) T 1txg_A 59 IFWPEQLEKCLE--NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLI 108 (335) T ss_dssp EECGGGHHHHHT--TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEE T ss_pred CCCCCCHHHHHH--CCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCC T ss_conf 037666899971--88758973768999999986543102101445315766 No 237 >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} Probab=45.16 E-value=15 Score=16.13 Aligned_cols=79 Identities=5% Similarity=0.055 Sum_probs=52.3 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEE Q ss_conf 75314078503578863688621204----567889999853995899805884------68889999998401771894 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~rii 125 (300) -|.|..........+.....+-.... ...+...++++...+.+++.+-+- +..+..+|.++|+++++.+| T Consensus 112 ~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~nP~NPtG~~~~~~~~~~l~~~~~~~~~~vi 191 (375) T 3op7_A 112 YPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYIL 191 (375) T ss_dssp ESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEE T ss_pred CCCCCHHHHHHHHCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE T ss_conf 79862158899972973466314511166874899997538887799976888998764444432101221104776887 Q ss_pred ECCCCEEEC Q ss_conf 068510135 Q gi|254781050|r 126 GPNCPGILT 134 (300) Q Consensus 126 GPNc~Gii~ 134 (300) -=.+..-+. T Consensus 192 ~De~y~~~~ 200 (375) T 3op7_A 192 SDEVYRSFS 200 (375) T ss_dssp EECCSCCCS T ss_pred ECCCHHHCC T ss_conf 234012015 No 238 >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} Probab=44.98 E-value=12 Score=16.70 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=23.4 Q ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 6368862120456788999985399589980588468 Q gi|254781050|r 71 ANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 71 ~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) .+.+-++|+|.+++-+....-..+++.+.+| |||. T Consensus 86 y~faaVCV~P~~V~~a~~~L~gs~v~vatVV--gFP~ 120 (288) T 3oa3_A 86 YGFATVCVRPDYVSRAVQYLQGTQVGVTCVI--GFHE 120 (288) T ss_dssp HTCSEEEECGGGHHHHHHHTTTSSCEEEEEE--STTT T ss_pred HCCCEEEECHHHHHHHHHHHCCCCCEEEEEE--CCCC T ss_conf 4991999899999999998358985178884--5799 No 239 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=44.85 E-value=15 Score=16.10 Aligned_cols=97 Identities=6% Similarity=0.029 Sum_probs=56.5 Q ss_pred HHCCCCCCCEEEEECCHH--HHHHHHHHHHHCCCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEEECC--CCEEEC- Q ss_conf 503578863688621204--567889999853995899805----88468889999998401771894068--510135- Q gi|254781050|r 64 EAKERTAANASVIYVPPS--GAGDAIIESIEAEIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLIGPN--CPGILT- 134 (300) Q Consensus 64 ea~~~~~~D~avI~VP~~--~v~dai~Ea~~agik~iviit----eGip~~d~~~l~~~A~~~g~riiGPN--c~Gii~- 134 (300) +..+..++++-.+-.|.. .-++.+++++....|.+.+.. .|+ ..|..++.++|+++|+.++==. +.|..- T Consensus 112 ~ia~~~G~~v~~i~~~~g~~~d~e~i~~~i~~~~k~v~~~~~~t~TG~-~~di~~I~~i~~~~~~~lvvD~v~s~g~~pi 190 (376) T 3f0h_A 112 QLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAV-LYDTMMIGEFCKKNNMFFVCDCVSAFLADPF 190 (376) T ss_dssp HHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTE-ECCHHHHHHHHHHTTCEEEEECTTTTTTSCC T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 999981997446316899877989999872558848998346786540-3773676766640595589865433567654 Q ss_pred -CCCHHCCEE---CCC-CCCCCCEEEEEECCC Q ss_conf -551000200---112-357786799980541 Q gi|254781050|r 135 -PDSCKIGIM---PGS-IFRKGSVGILSRSGT 161 (300) Q Consensus 135 -p~~~~lgi~---p~~-~~~pG~VgivSqSG~ 161 (300) .....+-+. +.+ ...|..++++.-|-. T Consensus 191 ~~~~~~id~~~~~~~K~l~~p~G~~~~~~~~~ 222 (376) T 3f0h_A 191 NMNECGADVMITGSQKVLACPPGISVIVLAPR 222 (376) T ss_dssp CHHHHTCSEEEEETTTTTCCCSSCEEEEECHH T ss_pred CCCCEEEEEHHCCCCCEECCCCCEEEEEECHH T ss_conf 34322321001136621015896057874799 No 240 >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} Probab=44.62 E-value=15 Score=16.08 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=13.1 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEECC Q ss_conf 40177189406851013555100020011 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMPG 145 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p~ 145 (300) +-....|+..++..-+-.| ..++|++|. T Consensus 125 alacD~ria~~~~a~f~~p-e~~~Gl~p~ 152 (287) T 3gkb_A 125 VAAADMAFAAAETAGLGQI-EALMGIIPG 152 (287) T ss_dssp HHHSSEEEEETTTCEEECG-GGGGTSCCC T ss_pred CCCCCCCCCCHHHHCCCCC-EEEECCCCC T ss_conf 1046634321010013574-113465886 No 241 >3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase; HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB: 3f4c_A* 3f4d_A* Probab=44.40 E-value=15 Score=16.06 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=52.1 Q ss_pred EEEEECCCCCCEEECCCCC--CCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH Q ss_conf 8997658998868727745--77531407850357886368862120456788999985399589980588468889999 Q gi|254781050|r 36 VVGGIHPKKGSTYWTGGNV--NVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRV 113 (300) Q Consensus 36 ivagV~Pgkgg~~~~g~~~--~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l 113 (300) |-+.|.|..=|.+.-++++ +.|-|.. |... .+..... ....+.+.+.++.++|++.+|-.|-----+|...+ T Consensus 12 V~Gpi~~~~lG~t~~HeHL~~d~~~~~~--d~~~---~~~~~~~-~~~~~~~el~~~~~aGv~~iVd~t~~~~grd~~~l 85 (330) T 3ojg_A 12 VCGPVPVEQLGKTLIHEHFLFGYPGFQG--DVTR---GTFREDE-SLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFL 85 (330) T ss_dssp TTEEEEGGGCCSEESCCEEEECCTTGGG--GTTT---SCCCHHH-HHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHH T ss_pred CCCCCCHHHCCCCEECCCCCCCCHHHHC--CCCC---CHHHHHH-HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH T ss_conf 2897897986981434073258856632--5563---1012354-69999999999998289879967886556699999 Q ss_pred HHHHHCCCCEEEECCCCEEE Q ss_conf 99840177189406851013 Q gi|254781050|r 114 KARLEKSSSRLIGPNCPGIL 133 (300) Q Consensus 114 ~~~A~~~g~riiGPNc~Gii 133 (300) .+++++.|+.++- +.|+. T Consensus 86 ~~ls~~tgv~iv~--~tG~h 103 (330) T 3ojg_A 86 RRVAEETGLNIIC--ATGYY 103 (330) T ss_dssp HHHHHHHCCEEEE--EECCC T ss_pred HHHHHHHCCCEEE--EEEEE T ss_conf 9999972997688--76653 No 242 >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Probab=43.92 E-value=15 Score=16.01 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=20.5 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 5778679998054147899999997199516764055 Q gi|254781050|r 148 FRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIG 184 (300) Q Consensus 148 ~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG 184 (300) .+||..-+|.=.|.++.-.+..+...| ....+.++ T Consensus 189 ~~~g~~VlI~GaG~~G~~a~q~a~~~G--~~~v~~~~ 223 (373) T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVG 223 (373) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEEC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEEE T ss_conf 999998999898806899999999839--94499990 No 243 >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Probab=43.70 E-value=15 Score=15.99 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=67.5 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 78679998054147899999997199516764055674467899999999973998728899970587248999999998 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKD 229 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~ 229 (300) +.+--+++-+|.... ..........+.+.....+.- ..|....-.+-....+|+.+++.+.|- |..-...-++... T Consensus 371 ~~~~ii~~d~g~~~~-~~~~~~~~~~~~~~~~~~~~g-~~G~~~~~aiga~~a~~~~~vi~i~GD--gsf~~~~~eL~t~ 446 (549) T 3eya_A 371 ADDAIFTCDVGTPTV-WAARYLKMNGKRRLLGSFNHG-SMANAMPQALGAQATEPERQVVAMCGD--GGFSMLMGDFLSV 446 (549) T ss_dssp CTTCEEEECTTHHHH-HHHHHCCCCSSCEEECCTTTC-CTTCHHHHHHHHHHHSTTSCEEEEEEH--HHHHHTGGGHHHH T ss_pred CCCCEEEECCCCCCH-HHHHHCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCEEEEEECC--CHHHCCHHHHHHH T ss_conf 666289965854312-444301345553323455777-777415899999986899848999737--0552569999999 Q ss_pred HHHCCCCCCEEEEEEEEC--CCCCCCCCEEEEECCC---CCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHHC Q ss_conf 642267552689984301--5765532200112248---88899999999998897--5788989999999999843 Q gi|254781050|r 230 EAKRGRKKPIVGFVAGKT--APPGRTMGHAGAVISG---GKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLGS 299 (300) Q Consensus 230 ~~~~~~~KPVva~~~Grt--Ap~g~~~gHaGAi~~~---~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~~ 299 (300) . ..+.|++.++---. .-....+-+.+--..+ ..-++. +..+..|+ ..+++++||.+.|++.+++ T Consensus 447 ~---~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~---~lA~a~G~~~~~v~~~~el~~aL~~a~~~ 517 (549) T 3eya_A 447 V---QMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFA---RIAEACGITGIRVEKASEVDEALQRAFSI 517 (549) T ss_dssp H---HTTCCCEEEEEECSBCCCC------------CCBCCCCCHH---HHHHHTTSEEEEECSGGGHHHHHHHHHHS T ss_pred H---HHCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHH---HHHHHCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 9---96869299999799640887887753888876748999999---99997798499969899999999999808 No 244 >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, PSI; HET: MSE; 2.00A {Enterococcus faecalis V583} Probab=43.66 E-value=15 Score=15.99 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=78.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC--------CCCEEEC--CC--CCCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 73999888843779999999862698189976589--------9886872--77--457753140785035788636886 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPK--------KGSTYWT--GG--NVNVPVFTTVAEAKERTAANASVI 76 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pg--------kgg~~~~--g~--~~~iPvy~sv~ea~~~~~~D~avI 76 (300) =||+|.|. |.-|+++......- |.+|.. +.-+ +.|.... +. ...+|++..-.........|+.++ T Consensus 4 MkI~IiGa-GaiG~~~a~~La~~-G~~V~l-v~r~~~~~e~i~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iiv 80 (316) T 2ew2_A 4 MKIAIAGA-GAMGSRLGIMLHQG-GNDVTL-IDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316) T ss_dssp CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEE-EECCHHHHHHHHHCCCEEECCCCEEEECCCEECCHHHHHCCCCCCEEEE T ss_conf 98999992-89999999999968-997899-9788999999997896894489858714753362111001467528999 Q ss_pred ECCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE--CCCCHHCCEECCCCCCCCC Q ss_conf 212045678899998539--958998058846888999999840177189406851013--5551000200112357786 Q gi|254781050|r 77 YVPPSGAGDAIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL--TPDSCKIGIMPGSIFRKGS 152 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii--~p~~~~lgi~p~~~~~pG~ 152 (300) ++++....++..+....- -..++.+--|+...+. +.+. -.....+.|....+.. .|+. .....+|. T Consensus 81 ~~k~~~~~~~~~~l~~~~~~~t~iv~~qNg~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~p~~-------~~~~~~g~ 150 (316) T 2ew2_A 81 LTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDV--LEKY-VPKENILVGITMWTAGLEGPGR-------VKLLGDGE 150 (316) T ss_dssp CSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHH--HTTT-SCGGGEEEEEECCCCEEEETTE-------EEECSCCC T ss_pred EECCCCHHHHHHHCCCCCCCCCEEEECCCCCCCHHH--HHHH-CCCCCEECCCEEEEEEECCCCE-------EEECCCCC T ss_conf 505504698985211101467567742477651056--7765-3632022132034135248963-------55415563 Q ss_pred EEEEEECCC---HHHHHHHHHHHCCCCEE Q ss_conf 799980541---47899999997199516 Q gi|254781050|r 153 VGILSRSGT---LTYEAVFQTSQEGLGQS 178 (300) Q Consensus 153 VgivSqSG~---l~~e~~~~~~~~g~G~S 178 (300) .-+...++. ...++...+...|+-+. T Consensus 151 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 179 (316) T 2ew2_A 151 IELENIDPSGKKFALEVVDVFQKAGLNPS 179 (316) T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEE T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 25503587403789999998875599715 No 245 >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, alternative splicing, aminotransferase, lyase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Probab=43.65 E-value=15 Score=15.99 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=42.2 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH---------------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHH Q ss_conf 75314078503578863688621204---------------567889999853995899805884------688899999 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS---------------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVK 114 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~---------------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~ 114 (300) -|.|......... .....+.||.. .-++.+.+++....+.+++.+-+= +..+..+|. T Consensus 116 ~p~~~~y~~~~~~--~g~~~v~vp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~p~NPtG~~~s~~~~~~l~ 193 (410) T 3e2y_A 116 VPFYDCYEPMVRM--AGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIA 193 (410) T ss_dssp ESCCTTHHHHHHH--TTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH T ss_pred CCCCCCHHHHHHH--CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHH T ss_conf 8874108999998--28847723544443333345554456899999975446886697189969974002079999999 Q ss_pred HHHHCCCCEEEE Q ss_conf 984017718940 Q gi|254781050|r 115 ARLEKSSSRLIG 126 (300) Q Consensus 115 ~~A~~~g~riiG 126 (300) ++|+++++.+|= T Consensus 194 ~~a~~~~~~ii~ 205 (410) T 3e2y_A 194 DLCVKHDTLCIS 205 (410) T ss_dssp HHHHHHTCEEEE T ss_pred HHHHHCCCCEEC T ss_conf 999986981002 No 246 >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* Probab=42.31 E-value=16 Score=15.86 Aligned_cols=88 Identities=6% Similarity=-0.062 Sum_probs=43.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE-CCCCEEECCCCHH--CCEECCCCC Q ss_conf 3688621204567889999853995899805884688899999984017718940-6851013555100--020011235 Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG-PNCPGILTPDSCK--IGIMPGSIF 148 (300) Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG-PNc~Gii~p~~~~--lgi~p~~~~ 148 (300) ++..-.-|- ++-+....+.|++.||.+...-.........+.+++.|++++= |-...-.++.... +.++-. . T Consensus 21 ~l~~sgqP~---~~dl~~L~~~GiktVInLr~~~e~~~~~~e~~~~~~~Gi~~~~iPv~~~~p~~e~v~~~~~~i~~--~ 95 (157) T 3gxh_A 21 QLLSSGLPN---EQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQ--H 95 (157) T ss_dssp TEEEEBCCC---HHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHH--T T ss_pred CCEECCCCC---HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHH--C T ss_conf 421258989---99999999869989998987664566525889999729704757886679599999999999986--3 Q ss_pred CCCCEEEEEECCCHHH Q ss_conf 7786799980541478 Q gi|254781050|r 149 RKGSVGILSRSGTLTY 164 (300) Q Consensus 149 ~pG~VgivSqSG~l~~ 164 (300) +.++|=+-++||.=+. T Consensus 96 ~~~pVlVHC~sG~R~g 111 (157) T 3gxh_A 96 KGKDVLVHCLANYRAS 111 (157) T ss_dssp TTSCEEEECSBSHHHH T ss_pred CCCCEEEECCCCCHHH T ss_conf 6994898879998199 No 247 >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Probab=42.26 E-value=16 Score=15.85 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 973999888843779999999862698189976589 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPK 43 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pg 43 (300) ++||+|-|.||..|+.-+++.++. |.+|++-+.+. T Consensus 11 k~KIlVtGatG~iG~~l~~~Ll~~-g~~V~~l~R~~ 45 (318) T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPN 45 (318) T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTT T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC T ss_conf 983999899968999999999978-69799997897 No 248 >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Probab=41.65 E-value=16 Score=15.79 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=65.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC-----------------------CCCEEEEECCCCCCEEECCCCCCCCCCC---CH Q ss_conf 739998888437799999998626-----------------------9818997658998868727745775314---07 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYC-----------------------QTQVVGGIHPKKGSTYWTGGNVNVPVFT---TV 62 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~-----------------------gt~ivagV~Pgkgg~~~~g~~~~iPvy~---sv 62 (300) -|+.+-|-||.-|+.-.+....+. ....|+-.++.+. ...++-+|. .+ T Consensus 4 K~I~IlGSTGSIG~~tL~Vi~~~~~f~v~~Lsa~~N~~~L~~q~~~f~p~~v~i~~~~~~------~~~~~~~~~g~~~l 77 (376) T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEF------EDSSINVWKGSHSI 77 (376) T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCC------CCSSSEEEESTTHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHH------HHHCCCEECCHHHH T ss_conf 789998877099999999982289965999977988999999999829999999588997------65087150486679 Q ss_pred HHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 8503578863688621204567889999853995899805884688899999984017718940 Q gi|254781050|r 63 AEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 63 ~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) .+..+..++|..+..+....-......|+++|-+.+..=-|-+=.-. --+.+.+++++.+++= T Consensus 78 ~~~~~~~~~D~vv~Ai~G~aGL~pt~~ai~~gk~iaLANKEslV~aG-~li~~~~~~~~~~i~P 140 (376) T 3a06_A 78 EEMLEALKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGG-FLVKKKLKEKGTELIP 140 (376) T ss_dssp HHHHHHHCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHH-HHHHHHHHHHCCEEEE T ss_pred HHHHCCCCCCEEEEECCHHHHCHHHHHHHHCCCEEEEECCCCEEECC-HHHHHHHHHCCCEEEE T ss_conf 99845678878999541231032577776258757762443046752-9899999973987998 No 249 >1t0k_B YL32, RP73, 60S ribosomal protein L30; joint and X-RAY refinement, ribosomal protein L30E, MBP fusion protein, ribosome; HET: MTT; 3.24A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Probab=41.23 E-value=17 Score=15.75 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=41.2 Q ss_pred CCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 5314078503578863688621204567889999853995899805884688899999984017718940 Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) .+++.+.-|.+... +.+- .+.+.+++..|--.+|++++..|+....++..+|+++++.++- T Consensus 9 ~I~~~L~la~kagk-----~v~G----~~~v~kai~~gkaklViiA~D~s~~~~~~i~~~~~~~~Vpv~~ 69 (105) T 1t0k_B 9 SINQKLALVIKSGK-----YTLG----YKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYY 69 (105) T ss_dssp CHHHHHHHHHHSSC-----EEES----HHHHHHHHHHTCCSEEEECTTCCHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHCC-----EEEC----HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 99999999999699-----6574----8999999983997299996879988999999999865998199 No 250 >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Probab=41.08 E-value=17 Score=15.74 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=46.2 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH-------HHHHHHHHHHH-CCCCEEEEECCCC------CHHHHHHHHHHHHCCC Q ss_conf 75314078503578863688621204-------56788999985-3995899805884------6888999999840177 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS-------GAGDAIIESIE-AEIPLIVCITEGI------PVLDMVRVKARLEKSS 121 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~-------~v~dai~Ea~~-agik~iviiteGi------p~~d~~~l~~~A~~~g 121 (300) -|.|.+..++.+.. ...++.+|.. .-.+...+++. .++|.+++.+-+= +..+..+|.++|++++ T Consensus 118 ~P~y~~~~~~~~~~--g~~~v~v~~~~~~~~~~~d~~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~ 195 (390) T 1d2f_A 118 TPAYDAFYKAIEGN--QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHG 195 (390) T ss_dssp ESCCHHHHHHHHHT--TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTT T ss_pred CCCCCHHHHHHHHH--CCEEEEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCE T ss_conf 88850368999970--8758997643378885457888655304778279998999898766403999999877676530 Q ss_pred CEEEECCCCE Q ss_conf 1894068510 Q gi|254781050|r 122 SRLIGPNCPG 131 (300) Q Consensus 122 ~riiGPNc~G 131 (300) +.||==.+-. T Consensus 196 ~~ii~De~Y~ 205 (390) T 1d2f_A 196 VRVISDEIHM 205 (390) T ss_dssp CEEEEECTTT T ss_pred EEEEEECCCC T ss_conf 4899865633 No 251 >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii OT3} Probab=41.06 E-value=17 Score=15.73 Aligned_cols=98 Identities=9% Similarity=0.120 Sum_probs=54.0 Q ss_pred HHCCCCCCCEEEEECCHHH--HHHHHHHHHH--CCCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEEECCCCEE--E Q ss_conf 5035788636886212045--6788999985--3995899805----884688899999984017718940685101--3 Q gi|254781050|r 64 EAKERTAANASVIYVPPSG--AGDAIIESIE--AEIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLIGPNCPGI--L 133 (300) Q Consensus 64 ea~~~~~~D~avI~VP~~~--v~dai~Ea~~--agik~iviit----eGip~~d~~~l~~~A~~~g~riiGPNc~Gi--i 133 (300) +..+..+.++.++..|+.. .++.+.++.. ..++.+.+.. -|+ ..|..++.++|+++|+.++==-+..+ . T Consensus 112 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~t~tG~-~~~i~~I~~~~~~~g~~~~vDa~qs~g~~ 190 (386) T 2dr1_A 112 EVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGV-LNPLPELAKVAKEHDKLVFVDAVSAMGGA 190 (386) T ss_dssp HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTE-ECCHHHHHHHHHHTTCEEEEECTTTBTTB T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEECCHHCCCC T ss_conf 99998298634641388876677889988623899069999866687676-77768899999875985999761203787 Q ss_pred --CCCCHHCCEE---CCCC-CCCCCEEEEEECCCH Q ss_conf --5551000200---1123-577867999805414 Q gi|254781050|r 134 --TPDSCKIGIM---PGSI-FRKGSVGILSRSGTL 162 (300) Q Consensus 134 --~p~~~~lgi~---p~~~-~~pG~VgivSqSG~l 162 (300) ......+-+. ..+. ..|..+|++.-|-.. T Consensus 191 ~~d~~~~~vD~~~~s~~K~l~~p~G~g~l~~~~~~ 225 (386) T 2dr1_A 191 DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERF 225 (386) T ss_dssp CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHH T ss_pred CCCCCCCCCCEEEECCCEEEECCCCEEEEEECHHH T ss_conf 63112468667961253232179966999836999 No 252 >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Probab=41.03 E-value=17 Score=15.73 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=48.1 Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 99765899886872774577531407850357886368862120456788999985399589980588468889999998 Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKAR 116 (300) Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~ 116 (300) -+-+.|-.=|.+.-+.++.+ .+..+..-.+.---+. --...+...+.++.++|++.+|..|-.--.++...+.++ T Consensus 8 ~g~i~~~~lG~t~~H~HL~~-~~~~~~~~~~~~~~~~----~~~~~~~~el~~~~~~Gv~~iV~~t~~~~~~~~~~l~~l 82 (314) T 2vc7_A 8 KDSIESKDIGFTLIHEHLRV-FSEAVRQQWPHLYNED----EEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKV 82 (314) T ss_dssp EEEECGGGCCSEESSCBSCB-CCHHHHHHCGGGCCHH----HHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHH T ss_pred CCCCCHHHCCCCEECCCCCC-CCHHHCCCCHHHHCHH----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH T ss_conf 99989899837324607156-8244224774531317----889999999999998299889980677641279999999 Q ss_pred HHCCCCEEEECCCCEEE Q ss_conf 40177189406851013 Q gi|254781050|r 117 LEKSSSRLIGPNCPGIL 133 (300) Q Consensus 117 A~~~g~riiGPNc~Gii 133 (300) +++.|+.++- +.|+. T Consensus 83 s~~~g~~i~~--~~G~h 97 (314) T 2vc7_A 83 VKATGINLVA--GTGIY 97 (314) T ss_dssp HHHHCCEEEE--CEEBC T ss_pred HHHCCCCEEE--EEEEC T ss_conf 9864996788--87763 No 253 >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* Probab=41.03 E-value=13 Score=16.42 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=38.9 Q ss_pred CEEEEECCHHHHHHHHHHH-HHCCCCEEEEECC---CC----------------CHHHH-HHHHHHHHCCCCEE Q ss_conf 3688621204567889999-8539958998058---84----------------68889-99999840177189 Q gi|254781050|r 72 NASVIYVPPSGAGDAIIES-IEAEIPLIVCITE---GI----------------PVLDM-VRVKARLEKSSSRL 124 (300) Q Consensus 72 D~avI~VP~~~v~dai~Ea-~~agik~iviite---Gi----------------p~~d~-~~l~~~A~~~g~ri 124 (300) |++-.|-|..|=++...+. .++|.|-+|..|. || |.+|. .++.+.||+.|+++ T Consensus 68 ~~~~~F~p~~fd~~~W~~l~k~aGakY~v~takHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~r~~Glk~ 141 (450) T 2wvv_A 68 KLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDV 141 (450) T ss_dssp GGGGGCCCTTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEE T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE T ss_conf 76752596659999999999985996799767733775344688999733368877770899999998438740 No 254 >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Probab=40.60 E-value=17 Score=15.69 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=50.2 Q ss_pred HHCCCCCCCEEEEECCHHHH--HHHHHHHHHC-CCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEE--ECCCCEEEC Q ss_conf 50357886368862120456--7889999853-995899805----88468889999998401771894--068510135 Q gi|254781050|r 64 EAKERTAANASVIYVPPSGA--GDAIIESIEA-EIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLI--GPNCPGILT 134 (300) Q Consensus 64 ea~~~~~~D~avI~VP~~~v--~dai~Ea~~a-gik~iviit----eGip~~d~~~l~~~A~~~g~rii--GPNc~Gii~ 134 (300) +..+..+.++-.+.+|.... .+..++++.. ..+.+.+.. .|+ ..+..++.++++++|..++ +=-++|.+- T Consensus 105 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~h~~t~tG~-~~pi~eI~~~~~~~g~~~~VDavqs~G~~~ 183 (411) T 3nnk_A 105 EIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTM-LQPLAELGEICRRYDALFYTDATASLGGNP 183 (411) T ss_dssp HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE-ECCCTTHHHHHHHHTCEEEEECTTTBTTBC T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 8877515652167426676520567999851489729999612316653-360478988875347505998303545455 Q ss_pred --CCCHHCCEEC---CC-CCCCCCEEEEEECCC Q ss_conf --5510002001---12-357786799980541 Q gi|254781050|r 135 --PDSCKIGIMP---GS-IFRKGSVGILSRSGT 161 (300) Q Consensus 135 --p~~~~lgi~p---~~-~~~pG~VgivSqSG~ 161 (300) .....+-++- -+ +.-|..+|++.=|-. T Consensus 184 id~~~~giD~~~~s~~K~l~gP~G~g~l~v~~~ 216 (411) T 3nnk_A 184 LETDVWGLDAVSAGMQKCLGGPSGTSPITLSAR 216 (411) T ss_dssp CCTTTTTCSEEECCSTTTTCCCSSEEEEEECHH T ss_pred CCCCCCCCCEEEEECCCCCCCCCCEEEEEECHH T ss_conf 545566677899705663347996589998889 No 255 >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Probab=40.50 E-value=17 Score=15.68 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=76.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEECC---CCCCCCCCCCHHHH---------CCCCCCCEEEE Q ss_conf 399988884377999999986269818997-658998868727---74577531407850---------35788636886 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGG-IHPKKGSTYWTG---GNVNVPVFTTVAEA---------KERTAANASVI 76 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivag-V~Pgkgg~~~~g---~~~~iPvy~sv~ea---------~~~~~~D~avI 76 (300) ||.|-|.||--|.--.+.....---++++= .+....|+.+.. ...+.++...+.+. ..-.++|+... T Consensus 10 kvaIvGatGy~G~eL~rlL~~HP~~el~~l~aS~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvFl 89 (354) T 1ys4_A 10 KVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFS 89 (354) T ss_dssp EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEEE T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCCHHCCCCEEEECCHHHHHHCCCCEEEE T ss_conf 49999954399999999996599967999997575489250430543257523200267257632502344237989998 Q ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCC----------CHH--H---HHHHHHHHH-CCCCEEEECCCCEEECCCCHHC Q ss_conf 21204567889999853995899805884----------688--8---999999840-1771894068510135551000 Q gi|254781050|r 77 YVPPSGAGDAIIESIEAEIPLIVCITEGI----------PVL--D---MVRVKARLE-KSSSRLIGPNCPGILTPDSCKI 140 (300) Q Consensus 77 ~VP~~~v~dai~Ea~~agik~iviiteGi----------p~~--d---~~~l~~~A~-~~g~riiGPNc~Gii~p~~~~l 140 (300) +.|.....+.+.+..++|.+ ++-.+.-+ |+. + ..++.+... +...+|-.|+|.=.- .-+ T Consensus 90 alP~~~s~~~~~~l~~~g~~-ViD~S~~~R~~~~~~~~~pe~~~~~~~l~e~~~~~~~~~a~~IAnPGCyaTa----~~l 164 (354) T 1ys4_A 90 ALPSDLAKKFEPEFAKEGKL-IFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTIC----AVI 164 (354) T ss_dssp CCCHHHHHHHHHHHHHTTCE-EEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCHHHHH----HHH T ss_pred CCCCHHHHHHHHHHHHCCCE-ECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHH----HHH T ss_conf 78964568999999971973-0257455413688762365313567766554433313576268558870677----888 Q ss_pred CEECC-CCCCCCCEEEEEECC Q ss_conf 20011-235778679998054 Q gi|254781050|r 141 GIMPG-SIFRKGSVGILSRSG 160 (300) Q Consensus 141 gi~p~-~~~~pG~VgivSqSG 160 (300) ++.|- ......++-+.+-|| T Consensus 165 ~L~PL~~~~~~~~i~i~a~sg 185 (354) T 1ys4_A 165 TLKPIMDKFGLEAVFIATMQA 185 (354) T ss_dssp HHHHHHHHHCCSEEEEEEEBC T ss_pred HHHHHHHHCCCCEEEEECCCC T ss_conf 679999744874488861444 No 256 >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Probab=40.48 E-value=17 Score=15.68 Aligned_cols=95 Identities=9% Similarity=-0.021 Sum_probs=51.3 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCC--CEEEEEC-CCCCCEEECC----CCCCCCCCCCHHHHCCCCCCCEEEEECC Q ss_conf 7973999888843779999999862698--1899765-8998868727----7457753140785035788636886212 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQT--QVVGGIH-PKKGSTYWTG----GNVNVPVFTTVAEAKERTAANASVIYVP 79 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt--~ivagV~-Pgkgg~~~~g----~~~~iPvy~sv~ea~~~~~~D~avI~VP 79 (300) ++-+|+|-|.||..|+.-.++.++. |. +|.+-+. |.+.-..... ...++=-.+.+.++.+ ++|..+..+. T Consensus 17 ~~kkILVtGatG~iG~~lv~~Ll~~-g~~~~v~~~~R~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~~~ 93 (242) T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLG 93 (242) T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCCEEEEEECCHHHHCCCCCCCCEEEEEEECCHHHHHHHHH--HHCCCCCCCC T ss_conf 8996999999849999999999977-997669995367233111013564169975100144688876--4100233322 Q ss_pred H---H------------HHHHHHHHHHHCCCCEEEEECCC Q ss_conf 0---4------------56788999985399589980588 Q gi|254781050|r 80 P---S------------GAGDAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 80 ~---~------------~v~dai~Ea~~agik~iviiteG 104 (300) - . .....+.-|.++|++.+|.++.. T Consensus 94 ~~~~~~~~~~~~~~n~~~~~~ia~~a~~~gvk~~v~~Ss~ 133 (242) T 2bka_A 94 TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK 133 (242) T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT T ss_pred CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 2233554420455215678999987875498669999446 No 257 >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... Probab=40.18 E-value=17 Score=15.65 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=31.4 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 678899998539958998058846888999999840177189406 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300) +...+..|.++|+..+|..+-...-.|...+.+.+++++.++++= T Consensus 49 ~~~~l~~a~~~Gv~~iV~~~~~~~~~d~~~l~~~~~~~~~~~~~~ 93 (330) T 2ob3_A 49 AVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAA 93 (330) T ss_dssp HHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 999999999849988999379988789999999998579988997 No 258 >3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Probab=40.07 E-value=17 Score=15.64 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=65.6 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECCCCEEECCCCHHCCEECCC-CC Q ss_conf 36886212045678899998539958998058846888999999840177--1894068510135551000200112-35 Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS--SRLIGPNCPGILTPDSCKIGIMPGS-IF 148 (300) Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g--~riiGPNc~Gii~p~~~~lgi~p~~-~~ 148 (300) |+-+.+--...|...++.|.++|-+.-|+++|.-|..+-.++.+..++.| +.+|=-|..+.+-+.. ..=++.+. ++ T Consensus 123 ~~ILTh~~S~tV~~~l~~A~~~gk~f~V~v~EsrP~~~G~~la~~L~~~GI~vt~I~Dsav~~~m~~v-d~VlvGAd~V~ 201 (315) T 3ecs_A 123 ATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKA-DLVIVGAEGVV 201 (315) T ss_dssp EEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGGHHHHGGGC-SEEEEECSEEC T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCC-CEEEEEEEEEE T ss_conf 99997488099999999999869908999957998632799999999779987997657999997508-88998201896 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 778679998054147899999997199516764 Q gi|254781050|r 149 RKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV 181 (300) Q Consensus 149 ~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V 181 (300) .-| ++++++||....++ +...++-|.-+. T Consensus 202 ~nG--~v~nkiGT~~iA~~--Ak~~~vPvyV~a 230 (315) T 3ecs_A 202 ENG--GIINKIGTNQMAVC--AKAQNKPFYVVA 230 (315) T ss_dssp TTS--CEEEETTHHHHHHH--HHHTTCCEEEEC T ss_pred CCC--CEEEHHHHHHHHHH--HHHCCCCEEEEC T ss_conf 388--88556418999999--876399769832 No 259 >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Probab=39.79 E-value=11 Score=16.80 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=47.5 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCHHHHH-----HH--HHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHHHCCCCEE Q ss_conf 775314078503578863688621204567-----88--9999853995899805---8846888999999840177189 Q gi|254781050|r 55 NVPVFTTVAEAKERTAANASVIYVPPSGAG-----DA--IIESIEAEIPLIVCIT---EGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 55 ~iPvy~sv~ea~~~~~~D~avI~VP~~~v~-----da--i~Ea~~agik~iviit---eGip~~d~~~l~~~A~~~g~ri 124 (300) .-|.|.|+-.+..- .++-.+|+++..-. +. ...+.....+++++.. .|. ..|+.++.++|+++|+.+ T Consensus 102 ~r~~H~S~~~~l~l--~ga~pv~v~~~~~~~~~~~~~i~~~~~~~~~~k~vilt~pty~G~-~~dl~~I~~la~~~~i~l 178 (446) T 2x3l_A 102 ARNVHKSVLHALDI--SQQEGHFIETHQSPLTNHYNKVNLSRLNNDGHKLVVLTYPNYYGE-TFNVEEVIKSLHQLNIPV 178 (446) T ss_dssp CTTCCHHHHHHHHH--HTCCEEECEEEECTTTSSEEEEEC-------CCEEEEESSCTTSC-CCCHHHHHHHHHHTTCCE T ss_pred CCCCHHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC-HHCHHHHHHHHHHCCCEE T ss_conf 68878999999998--299347952546731132025678875189835999946898863-106999999998759989 Q ss_pred EECCCCEE Q ss_conf 40685101 Q gi|254781050|r 125 IGPNCPGI 132 (300) Q Consensus 125 iGPNc~Gi 132 (300) +==.+-|. T Consensus 179 ivDeAhg~ 186 (446) T 2x3l_A 179 LIDEAHGA 186 (446) T ss_dssp EEECTTCT T ss_pred EEECCCCC T ss_conf 98526322 No 260 >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A Probab=39.79 E-value=18 Score=15.61 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=10.5 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-....|+..+++ -+-.| ..++|+.| T Consensus 109 al~~D~~ia~~~a-~f~~p-e~~~Gl~p 134 (243) T 2q35_A 109 GLYADFVVFSQES-VYATN-FMKYGFTP 134 (243) T ss_dssp HHTSSEEEEESSS-EEECC-HHHHTSCC T ss_pred CCCCCEEEECCCC-EECCC-CCCCCCCC T ss_conf 2046678752434-33165-00314555 No 261 >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Probab=39.56 E-value=18 Score=15.59 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=57.8 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHH---HHC--CCCEEEEECCCCCCEEECCC-----CCCCCCCCCHHHHCCCCCCCEEE Q ss_conf 179739998888437799999998---626--98189976589988687277-----45775314078503578863688 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAI---LYC--QTQVVGGIHPKKGSTYWTGG-----NVNVPVFTTVAEAKERTAANASV 75 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~---~y~--gt~ivagV~Pgkgg~~~~g~-----~~~iPvy~sv~ea~~~~~~D~av 75 (300) -+.+||.|-|.||--|..-.+... +|. ..+|..--+....|+.+..- ...-+++....+.. ..++|++. T Consensus 7 ~~~~kVaIlGATG~vG~eli~lL~~Hp~~~~~~~el~~laS~~saGk~i~~~~~~~~~~~~~~~~~~~~~~-~~~~Divf 85 (352) T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAV-LGGHDAVF 85 (352) T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHH-HTTCSEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCEECCCCHHH-CCCCCEEE T ss_conf 78878999890639999999999828764578459999996577897989959020177775004676556-15899999 Q ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 6212045678899998539958998058846 Q gi|254781050|r 76 IYVPPSGAGDAIIESIEAEIPLIVCITEGIP 106 (300) Q Consensus 76 I~VP~~~v~dai~Ea~~agik~iviiteGip 106 (300) .+.|.....+.+.+..+.+ . +++.++.+- T Consensus 86 ~alp~~~s~~~~~~~~~~~-~-~v~~~s~~~ 114 (352) T 2nqt_A 86 LALPHGHSAVLAQQLSPET-L-IIDCGADFR 114 (352) T ss_dssp ECCTTSCCHHHHHHSCTTS-E-EEECSSTTT T ss_pred ECCCCCCHHHHHHHHHCCC-E-EEECCCCCC T ss_conf 8899852666677751574-6-997265420 No 262 >3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Probab=39.48 E-value=18 Score=15.58 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 56788999985399589980588468889999998401771894 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) .+.+.+..|.+.|++ .+.||++=...-..+..+.|++.|+.++ T Consensus 29 ~~eelv~~A~e~G~~-~iaITDH~~l~G~~~~~~~a~~~gi~~i 71 (301) T 3o0f_A 29 TPRTLVEQARKLGLH-GVAIADHDTTAGWDEATEASEEIGLPLL 71 (301) T ss_dssp CHHHHHHHHHHTTCS-EEEECCBTCCTTHHHHHHHHHHHTCCEE T ss_pred CHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHHHCCCCCC T ss_conf 899999999988999-9999789985029999999987499811 No 263 >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Probab=39.30 E-value=18 Score=15.56 Aligned_cols=93 Identities=19% Similarity=0.054 Sum_probs=58.8 Q ss_pred ECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCC---------CCEEECCCCCCCCCCCCHHHHCCCCCCCEEE Q ss_conf 179739998888437799999998626981899765-899---------8868727745775314078503578863688 Q gi|254781050|r 6 DKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH-PKK---------GSTYWTGGNVNVPVFTTVAEAKERTAANASV 75 (300) Q Consensus 6 ~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~-Pgk---------gg~~~~g~~~~iPvy~sv~ea~~~~~~D~av 75 (300) +|. +|+|-|.||..|+.-.+..++.+..+|++-+. |.+ +=+.+.++ +-.-+++.++.. ++|..+ T Consensus 4 ~~k-~ILVtGatG~iG~~lv~~Ll~~g~~~V~~l~R~~~~~~~~~l~~~~v~~v~~D---~~~~~~~~~a~~--~~d~v~ 77 (299) T 2wm3_A 4 DKK-LVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGD---QDDQVIMELALN--GAYATF 77 (299) T ss_dssp CCC-EEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECC---TTCHHHHHHHHT--TCSEEE T ss_pred CCC-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEE---CCCCCCCCCCCC--CCCEEE T ss_conf 998-89998998889999999999589971999986853010134401897899944---356300112367--754899 Q ss_pred EECCHHH----------HHHHHHHHHHCCCCEEEEECCC Q ss_conf 6212045----------6788999985399589980588 Q gi|254781050|r 76 IYVPPSG----------AGDAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 76 I~VP~~~----------v~dai~Ea~~agik~iviiteG 104 (300) ...+... ....+.-|..+|++.+|.++.. T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~g~~~~v~~s~~ 116 (299) T 2wm3_A 78 IVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299) T ss_dssp ECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 857777643112556889999999998599679982354 No 264 >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Probab=39.23 E-value=18 Score=15.55 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=39.8 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHH Q ss_conf 77457753140785035788636886212045678899998539958998058846-8889999998 Q gi|254781050|r 51 GGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIP-VLDMVRVKAR 116 (300) Q Consensus 51 g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip-~~d~~~l~~~ 116 (300) ++..++|+|.-+....++..+..+...-.+....+.+.++.+.|.+.+-+-.-..+ .+|..++.++ T Consensus 116 gk~~~~pl~~Llgg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~~d~~~v~~i 182 (359) T 1mdl_A 116 GKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSI 182 (359) T ss_dssp HHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHH T ss_pred HCCCCCCHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH T ss_conf 1302485688729974445201023589999999999999984788142024676628899999999 No 265 >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Probab=38.44 E-value=18 Score=15.48 Aligned_cols=129 Identities=15% Similarity=0.224 Sum_probs=81.6 Q ss_pred CCCCCHHHHCCCC--------CCCEEEEECCHHH----HHHHHHHHHHCCCCEEEEEC-CC------CCHHHHHHHHHHH Q ss_conf 5314078503578--------8636886212045----67889999853995899805-88------4688899999984 Q gi|254781050|r 57 PVFTTVAEAKERT--------AANASVIYVPPSG----AGDAIIESIEAEIPLIVCIT-EG------IPVLDMVRVKARL 117 (300) Q Consensus 57 Pvy~sv~ea~~~~--------~~D~avI~VP~~~----v~dai~Ea~~agik~iviit-eG------ip~~d~~~l~~~A 117 (300) +.|+++.+..... ...+...+++... -.+++.+++....|.+.+-+ -+ .+..|..++.+++ T Consensus 110 ~~Y~tl~~vig~~~~~~~sL~~~GV~~~~v~l~~~g~id~e~v~~aI~p~TklV~Ie~S~gyp~~p~l~i~dI~eI~~la 189 (409) T 3jzl_A 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFV 189 (409) T ss_dssp SCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH T ss_conf 97567999864420110128763925789567766645899999631777746999955777889977899999999999 Q ss_pred HCC--CCEEEECCCCEEECCC--CHHCC--EECCCCCC-C-C---C-EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 017--7189406851013555--10002--00112357-7-8---6-799980541478999999971995167640556 Q gi|254781050|r 118 EKS--SSRLIGPNCPGILTPD--SCKIG--IMPGSIFR-K-G---S-VGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGG 185 (300) Q Consensus 118 ~~~--g~riiGPNc~Gii~p~--~~~lg--i~p~~~~~-p-G---~-VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~ 185 (300) +++ ++.+..=||.|-..-. -...| ++-....| + | + =|+|+-+--|--.++++++..|+|-....+.+. T Consensus 190 k~~~~~viv~VDntyg~~v~~~ePl~~GADlv~~SltK~lgG~~ap~GG~IaG~kelIe~aa~rl~~pg~g~~~G~~~~~ 269 (409) T 3jzl_A 190 KNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYS 269 (409) T ss_dssp HHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTC T ss_pred HHHCCCCEEEEECCCCCHHHCCCCHHHCCCEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 87389988997388754342178254379699996135378887765899982899999977774078765433568554 No 266 >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A Probab=38.23 E-value=17 Score=15.63 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=26.5 Q ss_pred CHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 07850357886368862120456788999985399589980588468 Q gi|254781050|r 61 TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 61 sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) -+.+|.+ .+.+-++|||.+++.+ .+....+++...++ |||. T Consensus 34 ~~~~A~~---~~~~aVcV~p~~v~~a-~~l~~s~v~v~tVi--gFP~ 74 (231) T 3ndo_A 34 LVDEAAD---LGVFAVCVSPPLVSVA-AGVAPSGLAIAAVA--GFPS 74 (231) T ss_dssp HHHHHHH---HTCSEEEECGGGHHHH-HHHCCTTCEEEEEE--STTT T ss_pred HHHHHHH---HCCCEEEECHHHHHHH-HHHCCCCCEEEEEE--CCCC T ss_conf 9999987---3998899898999999-98649995389881--7899 No 267 >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Probab=38.11 E-value=19 Score=15.44 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=27.9 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 79739998888437799999998626981899765 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH 41 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~ 41 (300) +|++|+|-|.||--|+.-+++.++. |-++|.++. T Consensus 31 ~~k~ILITGasGfIGs~lv~~L~~~-g~~~v~~vd 64 (377) T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVD 64 (377) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEE T ss_conf 8998999478988999999999977-997899993 No 268 >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, SGC, alternative splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Probab=37.61 E-value=19 Score=15.39 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=44.7 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----------HHHHHHHHHHH-CCCCEEEEECCC------CCHHHHHHHHHHHH Q ss_conf 75314078503578863688621204----------56788999985-399589980588------46888999999840 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----------GAGDAIIESIE-AEIPLIVCITEG------IPVLDMVRVKARLE 118 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----------~v~dai~Ea~~-agik~iviiteG------ip~~d~~~l~~~A~ 118 (300) .|.|..-....+.. ....+.+|-. ...+.+.|+.. ..+|.+++++-+ .+..+..++.++|+ T Consensus 188 ~P~Y~~y~~~~~~~--g~~~v~v~l~~e~~~~~d~~~l~~~i~~a~~~~~~k~i~l~nP~NPTG~v~s~e~l~~i~~~a~ 265 (498) T 3ihj_A 188 IPQYPLYSAVISEL--DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAW 265 (498) T ss_dssp ESCCTHHHHHHHHT--TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHC--CCEEEEEECCHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 58707799999986--9889984126001767799998778887640588359997699697354653357999976402 Q ss_pred CCCCEEEECCCCE Q ss_conf 1771894068510 Q gi|254781050|r 119 KSSSRLIGPNCPG 131 (300) Q Consensus 119 ~~g~riiGPNc~G 131 (300) ++++.||==.+-. T Consensus 266 ~~~i~iI~DEiY~ 278 (498) T 3ihj_A 266 EEKLFLLADEVYQ 278 (498) T ss_dssp HHTCEEEEECTTT T ss_pred CCEEEEEEECCCE T ss_conf 6479999840262 No 269 >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Probab=37.46 E-value=16 Score=15.89 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=47.4 Q ss_pred CCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCCC---HHHHHHHHHHHHCCCCEEEECCCCE Q ss_conf 14078503578863688621204----5678899998539958998058846---8889999998401771894068510 Q gi|254781050|r 59 FTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGIP---VLDMVRVKARLEKSSSRLIGPNCPG 131 (300) Q Consensus 59 y~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGip---~~d~~~l~~~A~~~g~riiGPNc~G 131 (300) ..|+..+.+.. ++.++.||.. .=+++++++++...+.+++..-..+ ..+..+|.++|+++|+.+.==.|.| T Consensus 202 H~s~~kaa~~l--Gi~v~~v~~d~~g~~D~~~L~~aI~~~t~~Vv~t~~tt~tG~idpi~eIa~ia~~~gi~lhVDaA~g 279 (514) T 3mad_A 202 HAAFDKAAQYF--GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLG 279 (514) T ss_dssp CTHHHHHHHHH--TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTT T ss_pred CHHHHHHHHHC--CCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHCCCEEEEECCCC T ss_conf 09999999986--9889996738899596999996434566599996654276367049999999997498088505444 Q ss_pred E Q ss_conf 1 Q gi|254781050|r 132 I 132 (300) Q Consensus 132 i 132 (300) . T Consensus 280 ~ 280 (514) T 3mad_A 280 G 280 (514) T ss_dssp T T ss_pred C T ss_conf 3 No 270 >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Probab=37.42 E-value=19 Score=15.38 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 5678899998539958998058846888999999840177 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) ...+++.+|.++||..+++++.. ..+..+.+++++++. T Consensus 28 d~~~vl~~a~~~gv~~ii~~~~~--~~~~~~~~~l~~~~~ 65 (268) T 1j6o_A 28 DRNAVISSFEENNIEFVVNVGVN--LEDSKKSLDLSKTSD 65 (268) T ss_dssp THHHHHHTTTTTTEEEEEEECSS--HHHHHHHHHHHTTCT T ss_pred CHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHCCC T ss_conf 99999999998899889990599--999999999984589 No 271 >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Probab=37.21 E-value=19 Score=15.35 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=55.1 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------CEEECCCCCCCCCCCCHHHHCCCCCCCEEEEEC Q ss_conf 797399988884377999999986269818997658998--------868727745775314078503578863688621 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG--------STYWTGGNVNVPVFTTVAEAKERTAANASVIYV 78 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg--------g~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~V 78 (300) .+.|++|-|.||..|+.-.++.++. |.+|.+-+.+... -+.+.++ +-=.+++.++.+ ++|.-+-.. T Consensus 12 ~~mkilVtGatG~vG~~l~~~L~~~-g~~V~~l~R~~~~~~~l~~~~~~~~~~D---l~d~~~l~~~~~--~~d~Vih~A 85 (342) T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAA-GHDLVLIHRPSSQIQRLAYLEPECRVAE---MLDHAGLERALR--GLDGVIFSA 85 (342) T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECTTSCGGGGGGGCCEEEECC---TTCHHHHHHHTT--TCSEEEEC- T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHCCCCCEEEEEE---CCCHHHHHHHHH--CCCEEEECC T ss_conf 9994999899988999999999978-6989999788113545033797799940---899999999983--898999644 Q ss_pred -----CHH-----------HHHHHHHHHHHCCCCEEEEEC Q ss_conf -----204-----------567889999853995899805 Q gi|254781050|r 79 -----PPS-----------GAGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 79 -----P~~-----------~v~dai~Ea~~agik~iviit 102 (300) .+. .....+.-|.+.+++.++.++ T Consensus 86 a~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~i~~S 125 (342) T 2x4g_A 86 GYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVG 125 (342) T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHTCSCEEEEC T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 4411001107899998788999999999865987235212 No 272 >3mo4_A Alpha-1,3/4-fucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: TYR; 1.90A {Bifidobacterium longum subsp} Probab=36.96 E-value=19 Score=15.33 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=36.1 Q ss_pred EECCHHHHHHHHHH-HHHCCCCEEEEEC---CCC---------------C----HHHH-HHHHHHHHCCCCEE Q ss_conf 62120456788999-9853995899805---884---------------6----8889-99999840177189 Q gi|254781050|r 76 IYVPPSGAGDAIIE-SIEAEIPLIVCIT---EGI---------------P----VLDM-VRVKARLEKSSSRL 124 (300) Q Consensus 76 I~VP~~~v~dai~E-a~~agik~iviit---eGi---------------p----~~d~-~~l~~~A~~~g~ri 124 (300) +|-|..|=+|.-.+ |.++|.|-+|+.| +|| | .+|. .++.+.||++|+++ T Consensus 58 ~Fnp~~fDad~W~~~~k~AGakY~vltaKHHDGF~lW~S~~t~~~v~~sp~~~~krDiv~el~~A~rk~Glk~ 130 (480) T 3mo4_A 58 LFNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKF 130 (480) T ss_dssp GCCCSCCCHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEE T ss_pred HCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE T ss_conf 5895528999999999985994899815727865573799999864357766888678999999998719714 No 273 >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.3 d.81.1.1 Probab=36.90 E-value=19 Score=15.32 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=71.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 7973999888843779999999862--69818997658998868727745775314078503578863688621204567 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILY--CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y--~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +.-||-|-|.||--|.--.+...+. --.++.+--+....|+.+.-...++.+- .+.+.. -.++|+...+.|..... T Consensus 5 ~~i~VaIvGATGyvG~eLi~lL~~~~hP~~~l~~~aS~~saGk~i~~~~~~l~v~-~l~~~~-~~~~DvvF~alp~~~s~ 82 (340) T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVG-DVDSFD-FSSVGLAFFAAAAEVSR 82 (340) T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECE-EGGGCC-GGGCSEEEECSCHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCEEEEEE-ECCHHH-HCCCCEEEECCCCCHHH T ss_conf 9855999888559999999999866998453999986677897766899278999-687324-20488899858861479 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHH--H-HCCCCEEEECCCCE Q ss_conf 8899998539958998058846888----9999998--4-01771894068510 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLD----MVRVKAR--L-EKSSSRLIGPNCPG 131 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d----~~~l~~~--A-~~~g~riiGPNc~G 131 (300) ..+..+.++|.+ ++-.+.-+-..+ ..+.... + .+....+--|||.- T Consensus 83 ~~~~~~~~~g~~-ViDlS~~~r~~~~p~~~~~~~~~~~~~~~~~~~va~p~c~~ 135 (340) T 2hjs_A 83 AHAERARAAGCS-VIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVA 135 (340) T ss_dssp HHHHHHHHTTCE-EEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCHHH T ss_pred HHHHHHHHCCEE-EEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC T ss_conf 999998546917-99787656666421001324657887633455535763220 No 274 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=36.41 E-value=20 Score=15.27 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=47.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCCEEECCCCCCCC--CCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 97399988884377999999986269818-997658998868727745775--314078503578863688621204567 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQV-VGGIHPKKGSTYWTGGNVNVP--VFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~i-vagV~Pgkgg~~~~g~~~~iP--vy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +-||+|.|--|||-.. .+.+.-+ ..+ ---+.||-.|..-..+...+. -++.+.+..++..+|+.||--..+.+. T Consensus 21 ~mkvLviGsGgREhAi--~~~l~~s-~~~~~v~~~pgN~g~~~~~~~~~i~~~d~~~l~~~~~~~~iDlvvvGpE~pL~~ 97 (442) T 3lp8_A 21 SMNVLVIGSGGREHSM--LHHIRKS-TLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEKIELVVIGPETPLMN 97 (442) T ss_dssp CEEEEEEECSHHHHHH--HHHHTTC-TTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTTCCEEEECSHHHHHT T ss_pred CCEEEEECCCHHHHHH--HHHHHHC-CCCCEEEEECCCHHHHHCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHH T ss_conf 8689998988899999--9999759-898989997996788741821662778999999999982999999898389887 Q ss_pred HHHHHHHHCCCCE Q ss_conf 8899998539958 Q gi|254781050|r 85 DAIIESIEAEIPL 97 (300) Q Consensus 85 dai~Ea~~agik~ 97 (300) ..+...-++|++. T Consensus 98 Gi~D~l~~~gi~v 110 (442) T 3lp8_A 98 GLSDALTEEGILV 110 (442) T ss_dssp THHHHHHHTTCEE T ss_pred HHHHHHHHCCCCE T ss_conf 8899997489947 No 275 >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Probab=36.24 E-value=20 Score=15.26 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=59.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCC--------------EEECCCCCCCCCCCCHHHH--CCCCCCCEEEEECCHH Q ss_conf 43779999999862698189976589988--------------6872774577531407850--3578863688621204 Q gi|254781050|r 18 GKAGTFHTEQAILYCQTQVVGGIHPKKGS--------------TYWTGGNVNVPVFTTVAEA--KERTAANASVIYVPPS 81 (300) Q Consensus 18 g~~g~~~~~~~~~y~gt~ivagV~Pgkgg--------------~~~~g~~~~iPvy~sv~ea--~~~~~~D~avI~VP~~ 81 (300) |+.-..--+...+|-|++-+-.|+-|-.. ..-.|++.-+|-|.-++-+ +...+...-.+=+-+. T Consensus 33 G~~~~~fE~~~a~~~g~k~av~~~sgT~Al~lal~~L~~~~~~~~~~gdeVi~p~~t~~at~~ai~~~G~~pv~~Did~~ 112 (390) T 3b8x_A 33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN 112 (390) T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCC T ss_conf 97899999999999785928998387999999999975415408899998996776008649999876998998726654 Q ss_pred ---HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf ---567889999853995899805-884688899999984017718940685101 Q gi|254781050|r 82 ---GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 82 ---~v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) .-++.+.+++....++++++- -|.| -|+.+++++|+++++.||==+|..+ T Consensus 113 t~~id~~~l~~~i~~~tkaIi~vh~~G~~-~d~~~I~~i~~~~~i~vIEDaAqa~ 166 (390) T 3b8x_A 113 TLNIDIESLKEAVTDSTKAILTVNLLGNP-NNFDEINKIIGGRDIILLEDNCESM 166 (390) T ss_dssp TCSBCHHHHHHHCCTTEEEEEEECGGGCC-CCHHHHHHHHTTSCCEEEEECTTCT T ss_pred CCCCCHHHHHHHHCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCEEECCCHHCC T ss_conf 31347899998742487053300567884-6789999999872985770130145 No 276 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=36.06 E-value=20 Score=15.24 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=53.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 73999888843779999999862698189976589988687277457753140785035788636886212045678899 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAII 88 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~ 88 (300) .||.|.|=.|..|...++..... |-+ |.++.+.. +....++.+ ++|+-+++||+..+.+.+. T Consensus 22 ~ki~iIGG~G~mG~sla~~l~~~-G~~-V~~~d~~~--------------~~~~~~~~~--~aD~VilavP~~~~~~~l~ 83 (298) T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS-GYP-ISILDRED--------------WAVAESILA--NADVVIVSVPINLTLETIE 83 (298) T ss_dssp CCEEEETTTSHHHHHHHHHHHTT-TCC-EEEECTTC--------------GGGHHHHHT--TCSEEEECSCGGGHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCE-EEEECCCC--------------HHHHHHHHC--CCCEEEEECCHHHHHHHHH T ss_conf 83899926986789999999968-995-99974980--------------432899875--9999999096999978789 Q ss_pred HHHHC-CCCEEEEECCCCCH Q ss_conf 99853-99589980588468 Q gi|254781050|r 89 ESIEA-EIPLIVCITEGIPV 107 (300) Q Consensus 89 Ea~~a-gik~iviiteGip~ 107 (300) +.... .-..+|+=...+.. T Consensus 84 ~~~~~l~~~~iv~Dv~SvK~ 103 (298) T 2pv7_A 84 RLKPYLTENMLLADLTSVKR 103 (298) T ss_dssp HHGGGCCTTSEEEECCSCCH T ss_pred HHHHHCCCCCEEEEECCCCH T ss_conf 87552488856974044126 No 277 >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A {Staphylococcus aureus subsp} Probab=35.65 E-value=20 Score=15.20 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=54.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCC--CCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 739998888437799999998626981899765899886872774--577531407850357886368862120456788 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGN--VNVPVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~--~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) -||+|.|. |.-|++.+.++..- |-+|..-....+.-+...... ..-..+.+..|+.+ ..|+-+++|++....++ T Consensus 3 MkI~IiGa-GaiG~~~a~~L~~~-G~~Vtl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~IivavKs~~l~~~ 78 (294) T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQS-LPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTN--TFDVIIIAVKTHQLDAV 78 (294) T ss_dssp CCEEEECC-SHHHHHHHHHHHHH-CTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCS--CEEEEEECSCGGGHHHH T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHCCCCCCCCCCEEECCHHHHCC--CCCEEEEECCCCCHHHH T ss_conf 98999996-89999999999955-9927999739999986588778876356468567068--86689990587632667 Q ss_pred HHHHHHC-CC-CEEEEECCCCCHHH Q ss_conf 9999853-99-58998058846888 Q gi|254781050|r 87 IIESIEA-EI-PLIVCITEGIPVLD 109 (300) Q Consensus 87 i~Ea~~a-gi-k~iviiteGip~~d 109 (300) +.+.... +- ..+|.+.-|+...+ T Consensus 79 ~~~l~~~~~~~t~Iv~lqNGi~~~e 103 (294) T 3g17_A 79 IPHLTYLAHEDTLIILAQNGYGQLE 103 (294) T ss_dssp GGGHHHHEEEEEEEEECCSSCCCGG T ss_pred HHHHHHCCCCCEEEEECCCCCCCCC T ss_conf 8888742478616642036656445 No 278 >1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Probab=35.63 E-value=20 Score=15.20 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=13.0 Q ss_pred EECCCC-CCCHHHHHHHHHHCCCEEC Q ss_conf 122488-8899999999998897578 Q gi|254781050|r 259 AVISGG-KGGAEDKINAMKEAGICIA 283 (300) Q Consensus 259 Ai~~~~-~g~a~~k~~al~~aGv~v~ 283 (300) ||+..| +=.-+.-+++..+.|+.++ T Consensus 559 aIiQPGGSirD~evI~aan~~giaMv 584 (593) T 1g8m_A 559 FIVAPSGSAADEVVIEACNELGITLI 584 (593) T ss_dssp EEEEECCCTTHHHHHHHHHHHTCEEE T ss_pred EEECCCCCCCCHHHHHHHHHHCCEEE T ss_conf 99879864360999999997398899 No 279 >4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1 Probab=35.59 E-value=20 Score=15.19 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=43.3 Q ss_pred HHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEE---EEEECCCC--CCCCCEEEEECCCCCCCHH Q ss_conf 999999739987288999705872489999999986422675526899---84301576--5532200112248888999 Q gi|254781050|r 195 DVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGF---VAGKTAPP--GRTMGHAGAVISGGKGGAE 269 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~---~~GrtAp~--g~~~gHaGAi~~~~~g~a~ 269 (300) +.++.+.+ ...+.||+.+-=.|+.-.+..++++.+.+ ...|||.- ..|+.... ++....+|+|.++.+.... T Consensus 236 ~~l~~~~~-~~~~giVl~g~G~G~~p~~~~~~l~~a~~--~gi~VV~~sqc~~G~v~~~~~~~~~~~~G~i~~~dmt~e~ 312 (337) T 4pga_A 236 TAYKALAQ-NGAKALIHAGTGNGSVSSRVVPALQQLRK--NGTQIIRSSHVNQGGFVLRNAEQPDDKNDWVVAHDLNPEK 312 (337) T ss_dssp HHHHHHHH-TTCSEEEEEEBTTTBCCTTTHHHHHHHHH--TTCEEEEEESCCSBCCCCTTTSSCHHHHTCEECTTCCHHH T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHH--CCCEEEEEEECCCCCCCCCCCCCCHHHCCEEECCCCCHHH T ss_conf 99999987-79989999543688999899999999997--8987999850698873756455443238989999989999 Q ss_pred HHHHHHHHCCCEECCCHHHHHHH Q ss_conf 99999998897578898999999 Q gi|254781050|r 270 DKINAMKEAGICIAPSPARIGRS 292 (300) Q Consensus 270 ~k~~al~~aGv~v~~s~~el~~~ 292 (300) +....+--.+ .-.+++|+-++ T Consensus 313 A~~kL~~~L~--~~~~~~~i~~~ 333 (337) T 4pga_A 313 ARILAMVAMT--KTQDSKELQRI 333 (337) T ss_dssp HHHHHHHHTT--TCCCHHHHHHH T ss_pred HHHHHHHHHC--CCCCHHHHHHH T ss_conf 9999999983--89999999999 No 280 >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} Probab=35.58 E-value=20 Score=15.19 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=36.8 Q ss_pred EEEEECCHHHHHHHHHH-HHHCCCCEEEEEC---CCC-------------------CHHHH-HHHHHHHHCCCCEE Q ss_conf 68862120456788999-9853995899805---884-------------------68889-99999840177189 Q gi|254781050|r 73 ASVIYVPPSGAGDAIIE-SIEAEIPLIVCIT---EGI-------------------PVLDM-VRVKARLEKSSSRL 124 (300) Q Consensus 73 ~avI~VP~~~v~dai~E-a~~agik~iviit---eGi-------------------p~~d~-~~l~~~A~~~g~ri 124 (300) ..-.|-|-.|=++...+ |.++|.|-+|+.| +|| |.+|. .++.+.||++|+++ T Consensus 45 ~~~~F~p~~fd~~~W~~~~k~aGaky~vltakHHDGF~lw~S~~t~~~~~~s~~~g~krDlv~el~~A~rk~Glk~ 120 (469) T 3eyp_A 45 STAIFNPTALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKA 120 (469) T ss_dssp CGGGCCCSSCCHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE T ss_pred CHHCCCCCCCCHHHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE T ss_conf 3220793208999999999986996899652105756677899998765457877886449999999998619736 No 281 >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2 Probab=35.16 E-value=21 Score=15.15 Aligned_cols=127 Identities=12% Similarity=0.095 Sum_probs=53.9 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCC-------CCHHHHHHHHHHHHC--CCCEEEECCCCEEECCCCHHCC Q ss_conf 36886212045678899998539958998-0588-------468889999998401--7718940685101355510002 Q gi|254781050|r 72 NASVIYVPPSGAGDAIIESIEAEIPLIVC-ITEG-------IPVLDMVRVKARLEK--SSSRLIGPNCPGILTPDSCKIG 141 (300) Q Consensus 72 D~avI~VP~~~v~dai~Ea~~agik~ivi-iteG-------ip~~d~~~l~~~A~~--~g~riiGPNc~Gii~p~~~~lg 141 (300) -.|+.........+.+.++-+.|+..+-+ |.+| ++.....+++++... -.+-++ +.+|... + T Consensus 9 spSil~ad~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~~~g~~~i~~l~~~~~~~~~dvHLM------v~~p~~~-i- 80 (227) T 1tqx_A 9 APSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLM------VEYPEKY-V- 80 (227) T ss_dssp EEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEE------SSCGGGG-G- T ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEE------ECCHHHH-C- T ss_conf 3546421999999999999974999899966049676765528899976653278876689984------1674651-5- Q ss_pred EECCCCCCCCCEEEEEECC--CHHH--HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEE-EEEEECC Q ss_conf 0011235778679998054--1478--999999971995167640556744678999999999739987288-9997058 Q gi|254781050|r 142 IMPGSIFRKGSVGILSRSG--TLTY--EAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESI-VMVGEIG 216 (300) Q Consensus 142 i~p~~~~~pG~VgivSqSG--~l~~--e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~I-vl~gEiG 216 (300) + .....|..-+.-+.- .... ....+..+.|+ ...+.+-. .+++..+.+|+..+ ..+.| +|-.++| T Consensus 81 --~-~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~--~~Glal~p----~t~~~~~~~~l~~~-~iD~vl~m~V~PG 150 (227) T 1tqx_A 81 --P-LLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNL--WCGISIKP----KTDVQKLVPILDTN-LINTVLVMTVEPG 150 (227) T ss_dssp --G-GCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTC--EEEEEECT----TSCGGGGHHHHTTT-CCSEEEEESSCTT T ss_pred --H-HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCC--EEEEECCC----CCCHHHHHHHHHCC-CCCEEEEEEECCC T ss_conf --4-6642575058983114521309999999986497--47331489----99989987554004-3257999984136 No 282 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=35.07 E-value=21 Score=15.14 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=43.9 Q ss_pred CCCCCCHH--HHCCCCCCCEEEEECCHH-------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 75314078--503578863688621204-------567889999853995899805884688899999984017718940 Q gi|254781050|r 56 VPVFTTVA--EAKERTAANASVIYVPPS-------GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 56 iPvy~sv~--ea~~~~~~D~avI~VP~~-------~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiG 126 (300) +|-|.-+. .+... .....+|+.-. .-.+...+....-++.+++..-+-...|+.++.++|+++|+.||= T Consensus 77 ~p~~t~~~~~~~~~~--~g~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~G~~~d~~~i~~~~~~~~i~lIE 154 (394) T 1o69_A 77 ASSFTFIASVAPICY--LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394) T ss_dssp EESSSCGGGTHHHHH--TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE T ss_pred ECCCCCCEECHHHHH--CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE T ss_conf 389860102123652--661898733666523235779999850356856999824788851689999999975986884 Q ss_pred CCCCEEE Q ss_conf 6851013 Q gi|254781050|r 127 PNCPGIL 133 (300) Q Consensus 127 PNc~Gii 133 (300) =+|..+- T Consensus 155 D~A~a~G 161 (394) T 1o69_A 155 DAAEALG 161 (394) T ss_dssp ECTTCTT T ss_pred CCHHHHC T ss_conf 1304323 No 283 >2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Probab=34.94 E-value=21 Score=15.13 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=23.0 Q ss_pred HHHHHHHCCC-EECCCHHHHHHHHHHHHHC Q ss_conf 9999998897-5788989999999999843 Q gi|254781050|r 271 KINAMKEAGI-CIAPSPARIGRSLVELLGS 299 (300) Q Consensus 271 k~~al~~aGv-~v~~s~~el~~~l~~~l~~ 299 (300) ..+.|+++|. .+.+++.||+.+|+++-.+ T Consensus 160 ~~~~L~~aGad~vi~sl~eLp~il~~i~~r 189 (196) T 2oda_A 160 ATLKLYSLGVHSVIDHLGELESCLADIALR 189 (196) T ss_dssp HHHHHHHTTCSEEESSGGGHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEECCHHHHHHHHHHHHHH T ss_conf 999998589989989999999999999999 No 284 >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium frigidimaris KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Probab=34.50 E-value=21 Score=15.08 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=25.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 9739998888437799999998626981899765899 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK 44 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk 44 (300) +.||+|-|.||--|+.-+++.++.++...|.++.-.+ T Consensus 2 ~kKILItG~sGfiG~~l~~~L~~~~~~~~v~~~~~~~ 38 (312) T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRK 38 (312) T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 9709997589889999999999866966999825764 No 285 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=34.26 E-value=21 Score=15.06 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=53.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE---CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 973999888843779999999862698189976589988687---27745775314078503578863688621204567 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYW---TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~---~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +-+|+|.|. |.-|..-++..... |.+ |.|+...+..... .|-....-+.++..++.. +.|+-|+++|+..+. T Consensus 8 ~r~V~IIGl-GlIG~Sla~aL~~~-g~~-V~g~D~~~~~~~~A~~~g~~~~~~~~~~l~~a~~--~~DLIIlavPv~~i~ 82 (341) T 3ktd_A 8 SRPVCILGL-GLIGGSLLRDLHAA-NHS-VFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAA--EDALIVLAVPMTAID 82 (341) T ss_dssp SSCEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHH--TTCEEEECSCHHHHH T ss_pred CCCEEEEEE-CHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCC--CCCEEEECCCHHHHH T ss_conf 981899974-98999999999878-798-9999899999999998599854510056877404--686899669736666 Q ss_pred HHHHHHHHCCCCEEEEECCC Q ss_conf 88999985399589980588 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEG 104 (300) Q Consensus 85 dai~Ea~~agik~iviiteG 104 (300) +.+.+.....-+.+ ||+- T Consensus 83 ~vl~~l~~~~~~~i--vTDV 100 (341) T 3ktd_A 83 SLLDAVHTHAPNNG--FTDV 100 (341) T ss_dssp HHHHHHHHHCTTCC--EEEC T ss_pred HHHHHHHCCCCCCE--EECH T ss_conf 65676512466433--4113 No 286 >1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1 Probab=33.97 E-value=22 Score=15.03 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=42.3 Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE---EEECCCC-CCCCCEEEEECCCCCCCHH Q ss_conf 99999997399872889997058724899999999864226755268998---4301576-5532200112248888999 Q gi|254781050|r 194 IDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFV---AGKTAPP-GRTMGHAGAVISGGKGGAE 269 (300) Q Consensus 194 ~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~---~GrtAp~-g~~~gHaGAi~~~~~g~a~ 269 (300) .+.++.+.+ ..-+.||+.+-=.|+.-.+..+.++.+. .....|||.-- .|+.... +....-+|+|.++.+.... T Consensus 229 ~~~l~~~~~-~~~~GiVl~g~G~G~~~~~~~~~l~~~~-~~~gi~VV~~sq~~~G~v~~~~~~~~~~~G~i~~g~lt~e~ 306 (331) T 1agx_A 229 PDAYQAFAK-AGVKAIIHAGTGNGSMANYLVPEVRKLH-DEQGLQIVRSSRVAQGFVLRNAEQPDDKYGWIAAHDLNPQK 306 (331) T ss_dssp THHHHHHHT-TTCSEEEEEEBTTTBCCTTHHHHHHHHH-HTTCCEEEEEESSCSSCBCTTTSSCHHHHTCEECBTCCHHH T ss_pred HHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHH-HHCCCEEEEEEECCCCEECCCCCCCHHCCCEEECCCCCHHH T ss_conf 999997776-6997999953257764557999999998-74691899998579741466655542108989999989999 Q ss_pred HHHHHHHHCCCEECCCHHHHHHH Q ss_conf 99999998897578898999999 Q gi|254781050|r 270 DKINAMKEAGICIAPSPARIGRS 292 (300) Q Consensus 270 ~k~~al~~aGv~v~~s~~el~~~ 292 (300) +....+---+ ...+++|+-++ T Consensus 307 A~~kL~~~L~--~~~~~~ei~~~ 327 (331) T 1agx_A 307 ARLLMALALT--KTNDAKEIQNM 327 (331) T ss_dssp HHHHHHHHTT--TCCCHHHHHHH T ss_pred HHHHHHHHHC--CCCCHHHHHHH T ss_conf 9999999984--89999999999 No 287 >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Probab=33.79 E-value=22 Score=15.01 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=7.6 Q ss_pred HCCCCEEEEEECC Q ss_conf 7199516764055 Q gi|254781050|r 172 QEGLGQSTAVGIG 184 (300) Q Consensus 172 ~~g~G~S~~VsiG 184 (300) +..+|+-.+-+-| T Consensus 324 e~~~g~~iF~t~G 336 (556) T 2w3p_A 324 ELAVGTWVFRTEG 336 (556) T ss_dssp CSSCCEEEEEEES T ss_pred HHHHHHHHHCCCC T ss_conf 8765567420378 No 288 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6 Probab=33.73 E-value=22 Score=15.00 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=56.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCEEECCCCCCC--CCCCCHHHHCCCCCCCEEEEECCHHHHHHH Q ss_conf 39998888437799999998626981-899765899886872774577--531407850357886368862120456788 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQ-VVGGIHPKKGSTYWTGGNVNV--PVFTTVAEAKERTAANASVIYVPPSGAGDA 86 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~-ivagV~Pgkgg~~~~g~~~~i--Pvy~sv~ea~~~~~~D~avI~VP~~~v~da 86 (300) ++.+.|. |.-|+.-++...++ |-+ -|.|+.+.+--.... ...++ ..+.+..+... ..+|+.++++|+..+.+. T Consensus 3 ~I~IiG~-G~mG~sla~~L~~~-g~~~~V~~~d~~~~~~~~a-~~~g~id~~~~~~~~~~~-~~~dlvila~p~~~~~~~ 78 (281) T 2g5c_A 3 NVLIVGV-GFMGGSFAKSLRRS-GFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTFREI 78 (281) T ss_dssp EEEEESC-SHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHH-HHTTSCSEEESCGGGGGG-TCCSEEEECSCHHHHHHH T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHH-HHCCCCCEECCCHHHHCC-CCCCEEEECCCCHHHHHH T ss_conf 8999923-98999999999816-9984899998999999999-986997610463555314-578889983680443215 Q ss_pred HHHHHHC-CCCEEEEECCCCC Q ss_conf 9999853-9958998058846 Q gi|254781050|r 87 IIESIEA-EIPLIVCITEGIP 106 (300) Q Consensus 87 i~Ea~~a-gik~iviiteGip 106 (300) +.+-... .-..+++-+..+- T Consensus 79 ~~~l~~~~~~~~ii~Dv~Svk 99 (281) T 2g5c_A 79 AKKLSYILSEDATVTDQGSVK 99 (281) T ss_dssp HHHHHHHSCTTCEEEECCSCC T ss_pred HHHHHHCCCCCCEEECCCCHH T ss_conf 655531024662132334407 No 289 >2zkr_6 60S ribosomal protein L30E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_C Probab=33.72 E-value=22 Score=15.00 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=27.3 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88999985399589980588468889999998401771894 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +.+.+++..|--.+|++++..|.....++..+|+++++.++ T Consensus 32 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~Ip~~ 72 (115) T 2zkr_6 32 KQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVH 72 (115) T ss_dssp HHHHHHHHHTCEEEEEEETTCCSSTTTHHHHHHHHHTCEEE T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEE T ss_conf 99999998199719999688998999999999986699979 No 290 >3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} Probab=33.64 E-value=22 Score=14.99 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=48.6 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH-------HHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCC Q ss_conf 7531407850357886368862120-------4567889999853995899805884------68889999998401771 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP-------SGAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSS 122 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~-------~~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~ 122 (300) -|.|....+.....+ ...+.+|. ....+...+.+....+.+++.+-+= +..+..+|.++|+++++ T Consensus 113 ~p~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~e~l~~l~~~a~~~~~ 190 (383) T 3kax_A 113 PPIYPPFFEMVTTNN--RQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNV 190 (383) T ss_dssp SSCCHHHHHHHHHTT--CEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTC T ss_pred CCCCCHHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEE T ss_conf 998731799998722--562024456546666789999996354686799978987886665769999999764125368 Q ss_pred EEEECCCCE Q ss_conf 894068510 Q gi|254781050|r 123 RLIGPNCPG 131 (300) Q Consensus 123 riiGPNc~G 131 (300) .||==.+-. T Consensus 191 ~ii~De~Y~ 199 (383) T 3kax_A 191 IVVADEIHS 199 (383) T ss_dssp EEEEECTTT T ss_pred EEECCCCCC T ss_conf 896031000 No 291 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=33.63 E-value=22 Score=14.99 Aligned_cols=119 Identities=23% Similarity=0.237 Sum_probs=64.9 Q ss_pred CCCC--CCHHHHCCCCCCCEEEEECCH--H-H--HHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 7531--407850357886368862120--4-5--6788999985399589980-58846888999999840177189406 Q gi|254781050|r 56 VPVF--TTVAEAKERTAANASVIYVPP--S-G--AGDAIIESIEAEIPLIVCI-TEGIPVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 56 iPvy--~sv~ea~~~~~~D~avI~VP~--~-~--v~dai~Ea~~agik~ivii-teGip~~d~~~l~~~A~~~g~riiGP 127 (300) +|-| .++..++.. ...-.+|+.- . + -++.+++++....|+++++ .-|.| .|+.+|.++|+++|+.||== T Consensus 81 ~p~~t~~a~~~ai~~--~G~~pv~~Did~~~~~id~~~l~~~it~~tkaIi~vh~~G~~-~d~~~i~~ia~~~~i~lIeD 157 (373) T 3frk_A 81 VPSNTFIATALAVSY--TGAKPIFVEPDIRTYNIDPSLIESAITEKTKAIIAVHLYGQP-ADMDEIKRIAKKYNLKLIED 157 (373) T ss_dssp EETTSCTHHHHHHHH--HSCEEEEECEETTTTEECGGGTGGGCCTTEEEEEEECCTTCC-CCHHHHHHHHHHHTCEEEEE T ss_pred ECCCCCHHHHHHHHH--CCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCEEEEE T ss_conf 678740301326751--467405752688867739999998536897499986888771-48999999999859989999 Q ss_pred CCCEEECC-CCHHCC---------EECCCCCC-CCCEEEEEECCCHHHHHHHHHHHCCCCE Q ss_conf 85101355-510002---------00112357-7867999805414789999999719951 Q gi|254781050|r 128 NCPGILTP-DSCKIG---------IMPGSIFR-KGSVGILSRSGTLTYEAVFQTSQEGLGQ 177 (300) Q Consensus 128 Nc~Gii~p-~~~~lg---------i~p~~~~~-pG~VgivSqSG~l~~e~~~~~~~~g~G~ 177 (300) +|..+-+- ...++| +.+.+.+. .|.=|++.-.-...++.+......|... T Consensus 158 ~A~a~g~~~~g~~~G~~gd~~~fSf~~~K~l~~~G~GG~i~t~~~~~~~~~~~~~~~G~~~ 218 (373) T 3frk_A 158 AAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK 218 (373) T ss_dssp CTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB T ss_pred CCCHHHCEECCEECCCCCCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCC T ss_conf 8112318779885268885468844687657766873899946889999998763048865 No 292 >3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* Probab=33.31 E-value=22 Score=14.96 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=9.3 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9999984017718940 Q gi|254781050|r 111 VRVKARLEKSSSRLIG 126 (300) Q Consensus 111 ~~l~~~A~~~g~riiG 126 (300) .++.+...++.+++++ T Consensus 592 ~Ei~e~i~rRp~kVVv 607 (763) T 3kp1_A 592 DEIREDIEKTPLKIVA 607 (763) T ss_dssp HHHHHHHHHSCCEEEE T ss_pred HHHHHHHCCCCCEEEE T ss_conf 9999860668847999 No 293 >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Probab=33.15 E-value=22 Score=14.94 Aligned_cols=76 Identities=9% Similarity=0.022 Sum_probs=50.2 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCE Q ss_conf 75314078503578863688621204------567889999853995899805884------688899999984017718 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS------GAGDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSR 123 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~------~v~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~r 123 (300) -|.|.....+.+..+.. ++.+|.. .-.+.+.++.....+.+++.+-+= +..+..++.+.|+++++. T Consensus 135 ~P~y~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~p~NPtG~~~s~e~~~~l~~~~~~~~~~ 212 (416) T 1bw0_A 135 QPGFPHYETVCKAYGIG--MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 212 (416) T ss_dssp ESCCTHHHHHHHHTTCE--EEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCC T ss_pred CCCCCHHHHHHHHCCCE--EEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 48763245557643965--7898524444543249999975304576688489979887400167899987677644826 Q ss_pred EEECCCCEEE Q ss_conf 9406851013 Q gi|254781050|r 124 LIGPNCPGIL 133 (300) Q Consensus 124 iiGPNc~Gii 133 (300) ||==.+-+-+ T Consensus 213 ii~De~Y~~~ 222 (416) T 1bw0_A 213 LFSDEIYAGM 222 (416) T ss_dssp EEEECTTTTC T ss_pred EEEECCHHHC T ss_conf 9830441011 No 294 >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Probab=32.52 E-value=23 Score=14.88 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=61.5 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 78679998054147899999997199516764055674467899999999973998728899970587248999999998 Q gi|254781050|r 150 KGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKD 229 (300) Q Consensus 150 pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~ 229 (300) |.+--++.-+|+............ + ...+..++.--+|..+.-.+-.-..+|+.++|.+.|- |..-.+.-++.-+ T Consensus 391 ~~~~ivv~d~g~~~~~~~~~~~~~--~-~~~~~~~~~g~mG~~l~~Aigaa~a~p~~~vv~i~GD--gsf~~~~~~L~ta 465 (570) T 2vbf_A 391 QSNETIVAEQGTSFFGASTIFLKS--N-SRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGD--GSLQLTVQELGLS 465 (570) T ss_dssp CSSEEEEECTTHHHHHHTTSCCCT--T-CEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEH--HHHHHHGGGHHHH T ss_pred CCCCEEEECCCCHHHHHHHHHCCC--C-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECH--HHHHHHHHHHHHH T ss_conf 677658832774366655432001--1-1001346657777665078888872899978999891--6863329999999 Q ss_pred HHHCCCCCCEEEEEEEECC------CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC----EECCCHHHHHHHHHHHHH Q ss_conf 6422675526899843015------76553220011224888899999999998897----578898999999999984 Q gi|254781050|r 230 EAKRGRKKPIVGFVAGKTA------PPGRTMGHAGAVISGGKGGAEDKINAMKEAGI----CIAPSPARIGRSLVELLG 298 (300) Q Consensus 230 ~~~~~~~KPVva~~~GrtA------p~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv----~v~~s~~el~~~l~~~l~ 298 (300) .+ .+.|++.++.=-.. ..+.+...+ .+- .-+....-++|--.|. ..+++++||...|++.+. T Consensus 466 ~~---~~~~i~iiv~NN~g~g~~~~~~~~~~~~~-~~~---~~d~~~~A~a~G~~~~~v~~~~v~~~~el~~al~~a~~ 537 (570) T 2vbf_A 466 IR---EKLNPICFIINNDGYTVEREIHGPTQSYN-DIP---MWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQA 537 (570) T ss_dssp HH---TTCCCEEEEEESSSCHHHHHHSCTTCGGG-CCC---CCCGGGHHHHTTCCTTTEEEEEECBHHHHHHHHHHHHH T ss_pred HH---CCCCEEEEEEECCCCCEEEEECCCCCCCC-CCC---CCCHHHHHHHCCCCEEEECEEECCCHHHHHHHHHHHHH T ss_conf 98---09891999996898853460016866768-799---99999999987996065310210899999999999986 No 295 >3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} Probab=32.35 E-value=23 Score=14.86 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=32.5 Q ss_pred CCCCCCEEEEEEEECC---CCCCCCCEEEEECCCCCCCHHHHH-HHHHHCCCEECCCHHHHHHHHHHHHH Q ss_conf 2675526899843015---765532200112248888999999-99998897578898999999999984 Q gi|254781050|r 233 RGRKKPIVGFVAGKTA---PPGRTMGHAGAVISGGKGGAEDKI-NAMKEAGICIAPSPARIGRSLVELLG 298 (300) Q Consensus 233 ~~~~KPVva~~~GrtA---p~g~~~gHaGAi~~~~~g~a~~k~-~al~~aGv~v~~s~~el~~~l~~~l~ 298 (300) .+..|||++|..-... ...+.+.|.+-+.......-.-.+ -.++..| .++.+++|+.+.|++.|+ T Consensus 94 ~algkpvi~~~~D~R~~~~~~~~~~~~~~~~~e~~~~~~Nlmv~g~i~~~g-~~~~~~ddl~~~l~k~l~ 162 (162) T 3ehd_A 94 YAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG-RVVSSEEDLLEEIKQRLS 162 (162) T ss_dssp HHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE-EEESSHHHHHHHHHHTC- T ss_pred HHCCCEEEEEECCHHHCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCC-CEECCHHHHHHHHHHHCC T ss_conf 986995999963523306765664432210023134421357777787399-688679999999986519 No 296 >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=32.33 E-value=23 Score=14.86 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=84.0 Q ss_pred CCCEEEEECCCCCCEEECCCCCCCCCCCC----HHHHCCCCCCCEEEEECCH--HHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 98189976589988687277457753140----7850357886368862120--45678899998539958998058846 Q gi|254781050|r 33 QTQVVGGIHPKKGSTYWTGGNVNVPVFTT----VAEAKERTAANASVIYVPP--SGAGDAIIESIEAEIPLIVCITEGIP 106 (300) Q Consensus 33 gt~ivagV~Pgkgg~~~~g~~~~iPvy~s----v~ea~~~~~~D~avI~VP~--~~v~dai~Ea~~agik~iviiteGip 106 (300) .|+.+|-|-|...-.. ..=|.|.. +.++.++.+.++.+....- ..-.+.+......++.++++...... T Consensus 6 ~t~~Igvi~~~~~~~~-----~~npf~~~~~~gi~~~a~~~Gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 80 (295) T 3hcw_A 6 QTYKIGLVLKGSEEPI-----RLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN 80 (295) T ss_dssp CSCEEEEECSCCCHHH-----HSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT T ss_pred CCCEEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 7797999981687666-----56979999999999999986998999978999799999999999589988999766566 Q ss_pred HHHHHHHHHHHHCCCCE--EEECCCCEE------ECCCCHHCCE-ECCCCCCCC--CEEEEEECCCHHHHH------HHH Q ss_conf 88899999984017718--940685101------3555100020-011235778--679998054147899------999 Q gi|254781050|r 107 VLDMVRVKARLEKSSSR--LIGPNCPGI------LTPDSCKIGI-MPGSIFRKG--SVGILSRSGTLTYEA------VFQ 169 (300) Q Consensus 107 ~~d~~~l~~~A~~~g~r--iiGPNc~Gi------i~p~~~~lgi-~p~~~~~pG--~VgivSqSG~l~~e~------~~~ 169 (300) . +..+.+++.++. +++-+..+. +..+....+- +-.++.+.| +|+++.-+..+.+.- ... T Consensus 81 ~----~~~~~l~~~~iPvV~~~~~~~~~~~~~~~v~~d~~~a~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~ 156 (295) T 3hcw_A 81 D----PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETV 156 (295) T ss_dssp C----HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHH T ss_pred C----HHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 0----999999975998899831477788765698366899999999999972987567754874315788888999999 Q ss_pred HHHCCCCEEEEEECCCCCCCCCCH-HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 997199516764055674467899-999999973998728899970587248999999998642267552 Q gi|254781050|r 170 TSQEGLGQSTAVGIGGDPVKGTEF-IDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKP 238 (300) Q Consensus 170 ~~~~g~G~S~~VsiG~D~~~G~~~-~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KP 238 (300) +.+.++..... -...+...+.+. ..++.+|.+++.-++|+-. .+.-+.-++++.++...+.| T Consensus 157 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~------~d~~a~g~~~~l~~~g~~ip 219 (295) T 3hcw_A 157 ASQFNLDYQII-ETSNEREVILNYMQNLHTRLKDPNIKQAIISL------DAMLHLAILSVLYELNIEIP 219 (295) T ss_dssp HHHTTCEEEEE-EECSCHHHHHHHHHHHHHHHTCTTSCEEEEES------SHHHHHHHHHHHHHTTCCTT T ss_pred HHHCCCCCCEE-ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC------CHHHHHHHHHHHHHCCCCCC T ss_conf 99769994244-32566035667777777764147776434557------78999999999998699889 No 297 >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, alternative splicing, mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 2vgz_A* 2xh1_A* Probab=32.23 E-value=23 Score=14.85 Aligned_cols=74 Identities=8% Similarity=0.098 Sum_probs=46.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHH---HHHHHHHHHH------------CCCCEEEEECC-C------CCHHHHHHH Q ss_conf 753140785035788636886212045---6788999985------------39958998058-8------468889999 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSG---AGDAIIESIE------------AEIPLIVCITE-G------IPVLDMVRV 113 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~---v~dai~Ea~~------------agik~iviite-G------ip~~d~~~l 113 (300) -|.|....+..+.. ...++.||-.. -++...+..+ ...+.++++.. + ++..+..++ T Consensus 139 ~P~y~~~~~~~~~~--g~~~v~v~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~NPtG~~~~~~~~~~i 216 (425) T 2r2n_A 139 EPAYSGTLQSLHPL--GCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEI 216 (425) T ss_dssp SSCCHHHHHHHGGG--TCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHH T ss_pred CCCCCHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHH T ss_conf 68763146789872--8815888514344566789987753066788752037985999968999981726779999999 Q ss_pred HHHHHCCCCEEEECCCCE Q ss_conf 998401771894068510 Q gi|254781050|r 114 KARLEKSSSRLIGPNCPG 131 (300) Q Consensus 114 ~~~A~~~g~riiGPNc~G 131 (300) .++|+++++.+|==.+-+ T Consensus 217 ~~~a~~~~~~vi~De~y~ 234 (425) T 2r2n_A 217 YELARKYDFLIIEDDPYY 234 (425) T ss_dssp HHHHHHTTCEEEEECTTG T ss_pred HHHHHHCCCCCHHHHHHH T ss_conf 999986145662276675 No 298 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=32.22 E-value=23 Score=14.85 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=60.4 Q ss_pred CCCCCHHHHCCCCCCCEEEEECCHH---H--HHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 5314078503578863688621204---5--67889999853995899805-8846888999999840177189406851 Q gi|254781050|r 57 PVFTTVAEAKERTAANASVIYVPPS---G--AGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNCP 130 (300) Q Consensus 57 Pvy~sv~ea~~~~~~D~avI~VP~~---~--v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300) ..|.++..+... ..+-.+|++-. + -++.+++++....|+++++. -|.| .|+.++.++|+++|+.+|==+|. T Consensus 104 ~~~~~~~~~i~~--~g~~~v~~di~~~~~~id~~~le~~i~~ktkaIi~vh~~G~~-~di~~I~~ia~k~~i~lIeD~A~ 180 (391) T 3dr4_A 104 LTYIASANSVTY--CGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQI-CDMDPILEVARRHNLLVIEDAAE 180 (391) T ss_dssp SSCTHHHHHHHH--TTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECCBCGGGCC-CCHHHHHHHHHHTTCEEEEECTT T ss_pred CHHHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCC-CCHHHHHHHHHHCCCEEEEECHH T ss_conf 602321078875--798899831676335899999997468998299996987770-08999999999849989998822 Q ss_pred EEECC-CCHHC------C---EECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 01355-51000------2---0011235778679998054147899999997199 Q gi|254781050|r 131 GILTP-DSCKI------G---IMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGL 175 (300) Q Consensus 131 Gii~p-~~~~l------g---i~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~ 175 (300) .+-.. ..... + +.+.....-|.-|++.-.-...++........|. T Consensus 181 a~g~~~~~~~~g~~gd~~~~Sf~~~k~~~~g~GG~i~t~~~~~~~~~~~~~~~g~ 235 (391) T 3dr4_A 181 AVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGM 235 (391) T ss_dssp CTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTC T ss_pred HHCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCC T ss_conf 3178628851477612899847655565566786133379999999999985498 No 299 >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Probab=32.13 E-value=23 Score=14.84 Aligned_cols=29 Identities=21% Similarity=0.080 Sum_probs=18.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 9739998888437799999998626981899 Q gi|254781050|r 8 NTKVLVQGLTGKAGTFHTEQAILYCQTQVVG 38 (300) Q Consensus 8 ~t~vivqGitg~~g~~~~~~~~~y~gt~iva 38 (300) =+||-|.|. |..|+-.+..+... |-+|+- T Consensus 314 i~kvaViGa-G~mG~~IA~~~a~~-G~~V~l 342 (715) T 1wdk_A 314 VKQAAVLGA-GIMGGGIAYQSASK-GTPILM 342 (715) T ss_dssp CSSEEEECC-HHHHHHHHHHHHHT-TCCEEE T ss_pred CCEEEEECC-HHHHHHHHHHHHHC-CCEEEE T ss_conf 657989786-17679999999866-965788 No 300 >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Probab=31.93 E-value=23 Score=14.82 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=10.1 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-....|+--+++ -+-.| ..++|+.| T Consensus 125 al~cD~ria~~~a-~f~~p-e~~~G~~p 150 (276) T 2j5i_A 125 LVACDLAICADEA-TFGLS-EINWGIPP 150 (276) T ss_dssp HHHSSEEEEETTC-EEECG-GGGGTCCC T ss_pred HHCCCHHEECCCC-CEECC-CCCCCCCC T ss_conf 7534410067888-40033-23232488 No 301 >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Probab=31.76 E-value=24 Score=14.80 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 7399988884377999999986269818997658 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP 42 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P 42 (300) .||+|-|.||--|+.-+++.++. |-+|++-.+. T Consensus 22 kkVLVTGasGfiG~~lv~~L~~~-g~~V~~id~~ 54 (333) T 2q1w_A 22 KKVFITGICGQIGSHIAELLLER-GDKVVGIDNF 54 (333) T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECC T ss_conf 87999078878999999999978-2989999799 No 302 >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Probab=31.37 E-value=24 Score=14.76 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=8.2 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 89899999999998 Q gi|254781050|r 284 PSPARIGRSLVELL 297 (300) Q Consensus 284 ~s~~el~~~l~~~l 297 (300) ..++|+.+.+..+- T Consensus 325 ~~le~v~eA~~~~~ 338 (352) T 3fpc_A 325 RGFDNIEKAFMLMK 338 (352) T ss_dssp ESTTHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 89999999999997 No 303 >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase, cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Probab=31.33 E-value=24 Score=14.75 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=45.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH---HHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCEEEE Q ss_conf 75314078503578863688621204---56788999985399589980588------4688899999984017718940 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS---GAGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~---~v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~riiG 126 (300) .|.|..........+.....+-++.. ...+++.++.....+++++.+-+ ++..+..++.+.|+++++.+|= T Consensus 105 ~P~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~P~NPtG~~~~~~~l~~l~~~a~~~~~~li~ 184 (364) T 1lc5_A 105 TPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184 (364) T ss_dssp ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE T ss_pred CCCCHHHHHHHHHCCCEEEEEECCHHHCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 47724678999981984579856555168980999974789986899839969877545299998755443134258996 Q ss_pred CC Q ss_conf 68 Q gi|254781050|r 127 PN 128 (300) Q Consensus 127 PN 128 (300) =. T Consensus 185 De 186 (364) T 1lc5_A 185 DE 186 (364) T ss_dssp EC T ss_pred EC T ss_conf 55 No 304 >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} Probab=31.13 E-value=24 Score=14.73 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=36.3 Q ss_pred EECCHHHHHHHHHHHH-HCCCCEEEEECCC---C---------------C----HHHH-HHHHHHHHCCCCEE Q ss_conf 6212045678899998-5399589980588---4---------------6----8889-99999840177189 Q gi|254781050|r 76 IYVPPSGAGDAIIESI-EAEIPLIVCITEG---I---------------P----VLDM-VRVKARLEKSSSRL 124 (300) Q Consensus 76 I~VP~~~v~dai~Ea~-~agik~iviiteG---i---------------p----~~d~-~~l~~~A~~~g~ri 124 (300) .|-|..|=+|...++. ++|.|.+|+.+.| | | .+|. .++.+.||++|+++ T Consensus 53 ~F~P~~fD~~qWv~~~k~aGakyvvltaKHHDGF~lW~S~~t~~~v~~s~~~~~krDiv~el~~A~rk~Glk~ 125 (443) T 3gza_A 53 IFNPTELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQP 125 (443) T ss_dssp GCCCTTCCHHHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE T ss_pred HCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE T ss_conf 3895428999999999986996899854536886673799999765556564888687999999998709846 No 305 >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Probab=31.04 E-value=24 Score=14.72 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=48.7 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHH----HHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEE Q ss_conf 7531407850357886368862120456----7889999853995899805884------68889999998401771894 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGA----GDAIIESIEAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v----~dai~Ea~~agik~iviiteGi------p~~d~~~l~~~A~~~g~rii 125 (300) -|.|..-.+.....+.....+..+...- .+...++.....+.+++.+-+= +..+..++.++|+++++.|| T Consensus 132 ~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~l~~i~~~a~~~~~~ii 211 (389) T 1o4s_A 132 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII 211 (389) T ss_dssp ESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 89746689999972883353013433235616777765303564168846998988887899999999999998296999 Q ss_pred ECCCCEEEC Q ss_conf 068510135 Q gi|254781050|r 126 GPNCPGILT 134 (300) Q Consensus 126 GPNc~Gii~ 134 (300) =-.+-..+. T Consensus 212 ~De~y~~~~ 220 (389) T 1o4s_A 212 SDEVYDSLV 220 (389) T ss_dssp EECTTTTSB T ss_pred EECCCCCCC T ss_conf 612354201 No 306 >2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} Probab=31.01 E-value=24 Score=14.72 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=46.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCH--HH--HHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCEEE Q ss_conf 7531407850357886368862120--45--6788999985399589980588------468889999998401771894 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPP--SG--AGDAIIESIEAEIPLIVCITEG------IPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~--~~--v~dai~Ea~~agik~iviiteG------ip~~d~~~l~~~A~~~g~rii 125 (300) -|.|.......+..+.. .+.+|. .. -.+...++++...+.+++.+-+ .+..+..++.+.|+++++.|| T Consensus 118 ~P~y~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~nP~NPtG~~~s~~~l~~i~~~~~~~~~~ii 195 (376) T 2dou_A 118 EVAYPSYFGAARVASLR--TFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLI 195 (376) T ss_dssp SSCCHHHHHHHHHTTCE--EEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE T ss_pred CCCCHHHHHHHHCCCCE--EEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEE T ss_conf 76431233302305844--8823654445789999997475687599989999988756757888999988762777999 Q ss_pred ECCCCE Q ss_conf 068510 Q gi|254781050|r 126 GPNCPG 131 (300) Q Consensus 126 GPNc~G 131 (300) ==.+-. T Consensus 196 ~De~y~ 201 (376) T 2dou_A 196 HDNPYV 201 (376) T ss_dssp EECTTG T ss_pred EECCEE T ss_conf 405300 No 307 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=30.97 E-value=24 Score=14.71 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=88.7 Q ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCC-------CHHHHHHHHHHHHCC--CCEEEECCCCEEE Q ss_conf 5035788636886212045678899998539958998-05884-------688899999984017--7189406851013 Q gi|254781050|r 64 EAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVC-ITEGI-------PVLDMVRVKARLEKS--SSRLIGPNCPGIL 133 (300) Q Consensus 64 ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~ivi-iteGi-------p~~d~~~l~~~A~~~--g~riiGPNc~Gii 133 (300) .++....+-.|++..-.....+.+.++-++|+..+-+ |.+|. +......+++..... .+-++= - T Consensus 23 ~~Mk~~kIspSIl~aD~~~l~~~i~~l~~~g~d~iHiDImDG~FVpn~t~g~~~i~~ir~~~~~~~idvHLMv------~ 96 (246) T 3inp_A 23 NAMKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMV------K 96 (246) T ss_dssp ----CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEEC------S T ss_pred HCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHC------C T ss_conf 3089867517055278999999999999769998999750485376555798999999970898405521010------7 Q ss_pred CCCCHHCCEECCCCCCCCCEEEEEE--CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEE Q ss_conf 5551000200112357786799980--54147899999997199516764055674467899999999973998728899 Q gi|254781050|r 134 TPDSCKIGIMPGSIFRKGSVGILSR--SGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVM 211 (300) Q Consensus 134 ~p~~~~lgi~p~~~~~pG~VgivSq--SG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl 211 (300) +|.. .+ ..+...|.--+.-+ +-.-..++...+.+.|. ...+++-. .|.+.+ ++.+.++-+ .+.+| T Consensus 97 ~P~~-~i----~~~~~~g~d~I~~H~E~~~~~~~~i~~ik~~g~--k~Glalnp----~T~i~~-l~~~l~~iD-~VlvM 163 (246) T 3inp_A 97 PVDA-LI----ESFAKAGATSIVFHPEASEHIDRSLQLIKSFGI--QAGLALNP----ATGIDC-LKYVESNID-RVLIM 163 (246) T ss_dssp SCHH-HH----HHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTS--EEEEEECT----TCCSGG-GTTTGGGCS-EEEEE T ss_pred CHHH-HH----HHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC--EEEEEECC----CCCHHH-HHHHHHHHC-EEEEE T ss_conf 9999-99----999867997999842021089999999998198--17999637----778999-988764000-35674 Q ss_pred EEECC--CHHH-HHHHHHHHHHHH---CCCCCCEEEEEEEECCCCCCCCCEEEE--ECCCCCCCHHHHHHHHHHCCCEEC Q ss_conf 97058--7248-999999998642---267552689984301576553220011--224888899999999998897578 Q gi|254781050|r 212 VGEIG--GSAE-EEAAQFLKDEAK---RGRKKPIVGFVAGKTAPPGRTMGHAGA--VISGGKGGAEDKINAMKEAGICIA 283 (300) Q Consensus 212 ~gEiG--G~~E-~~aa~fi~~~~~---~~~~KPVva~~~GrtAp~g~~~gHaGA--i~~~~~g~a~~k~~al~~aGv~v~ 283 (300) -.++| |... .+..+-+++.++ ....+..+..=.|-+..--+.+-.+|| ++. |++ .|+ . T Consensus 164 ~V~PGf~GQ~f~~~~l~kI~~l~~~~~~~~~~~~I~VDGGIn~~ti~~l~~aGad~~V~---GSa-----iF~------~ 229 (246) T 3inp_A 164 SVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVA---GSA-----IFN------S 229 (246) T ss_dssp CSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEE---SHH-----HHT------S T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE---CHH-----HHC------C T ss_conf 21698876114577999999999887524777159997987999999999879999997---868-----868------9 Q ss_pred CCHHHHHHHHHHHHHCC Q ss_conf 89899999999998439 Q gi|254781050|r 284 PSPARIGRSLVELLGSL 300 (300) Q Consensus 284 ~s~~el~~~l~~~l~~l 300 (300) +++.+....|++.|+++ T Consensus 230 ~d~~~~i~~lr~~l~ki 246 (246) T 3inp_A 230 DSYKQTIDKMRDELNKV 246 (246) T ss_dssp SCHHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHCC T ss_conf 99999999999998649 No 308 >2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Probab=30.24 E-value=25 Score=14.64 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=28.1 Q ss_pred HHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHCCCCEE--EECCCCEEECCCCHH--CCEECCCCCCCCCEEEEEE Q ss_conf 899998539958998058---846888999999840177189--406851013555100--0200112357786799980 Q gi|254781050|r 86 AIIESIEAEIPLIVCITE---GIPVLDMVRVKARLEKSSSRL--IGPNCPGILTPDSCK--IGIMPGSIFRKGSVGILSR 158 (300) Q Consensus 86 ai~Ea~~agik~iviite---Gip~~d~~~l~~~A~~~g~ri--iGPNc~Gii~p~~~~--lgi~p~~~~~pG~VgivSq 158 (300) -+.+..+.|++.||.... .-..-...++.+.++..|+.. +=|...+...+.... ..++ ...+++|=+-++ T Consensus 34 ~~~~L~~~GiktVInLr~~~E~~~~~~~~~~~~~a~~~gi~~~~~p~~~~~~~~~~~i~~~~~~l---~~~~~pVlvHC~ 110 (156) T 2f46_A 34 DAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLI---GQAEYPVLAYCR 110 (156) T ss_dssp GHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTTCCHHHHHHHHHHH---HTSCSSEEEECS T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH---HCCCCCEEEECC T ss_conf 99999986997899678898677885899999999974995489624677766489999999998---436897898818 Q ss_pred CCC Q ss_conf 541 Q gi|254781050|r 159 SGT 161 (300) Q Consensus 159 SG~ 161 (300) ||. T Consensus 111 sG~ 113 (156) T 2f46_A 111 TGT 113 (156) T ss_dssp SSH T ss_pred CCC T ss_conf 997 No 309 >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Probab=30.13 E-value=25 Score=14.63 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=65.8 Q ss_pred CCCCCCHH--HHCCCCCCCEEEEECCHH---HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 75314078--503578863688621204---567889999853995899805-884688899999984017718940685 Q gi|254781050|r 56 VPVFTTVA--EAKERTAANASVIYVPPS---GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRVKARLEKSSSRLIGPNC 129 (300) Q Consensus 56 iPvy~sv~--ea~~~~~~D~avI~VP~~---~v~dai~Ea~~agik~iviit-eGip~~d~~~l~~~A~~~g~riiGPNc 129 (300) +|-|.-+. .++...+...-.+=+-+. .-++.+.+++...+|.++++- -|.| .|+.++.++|+++|+.||==+| T Consensus 84 ~p~~t~~a~~~ai~~~g~~pv~~Di~~~~~~~d~~~l~~~i~~~tkaii~~h~~G~~-~d~~~i~~i~~~~~i~lIeD~a 162 (393) T 1mdo_A 84 TPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAP-ADLDAIYALGERYGIPVIEDAA 162 (393) T ss_dssp EESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCC-CCHHHHHHHHHHHTCCBCEECT T ss_pred CCCCEEHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCE-ECHHHHHHHHHHCCCEEEECCH T ss_conf 179631311322423797899702543224588999997407783499713767833-1689999888742957997280 Q ss_pred CEEECC------CCHHCC---EECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCC Q ss_conf 101355------510002---00112357786799980541478999999971995 Q gi|254781050|r 130 PGILTP------DSCKIG---IMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLG 176 (300) Q Consensus 130 ~Gii~p------~~~~lg---i~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G 176 (300) ..+-.. |..-.+ +.+.+...-|.=|+|.-.---.++.+..+...|.. T Consensus 163 ~a~g~~~~g~~~G~~~~~~fSf~~~K~i~~geGG~i~tnd~~~~~~~~~lr~~G~~ 218 (393) T 1mdo_A 163 HATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLG 218 (393) T ss_dssp TCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEE T ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCC T ss_conf 33267438973586116999787887566779818999665889999999967988 No 310 >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Probab=30.12 E-value=25 Score=14.68 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=26.2 Q ss_pred CCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 407850357886368862120456788999985399589980588468 Q gi|254781050|r 60 TTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 60 ~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) .-+.+|.+ .+.+-++|||.+++-+.. .+ .+++...++ |||. T Consensus 24 ~~~~~A~~---~~~aaVcV~p~~v~~a~~-~l-~~vkv~tVv--gFP~ 64 (225) T 1mzh_A 24 EFVLKSEE---LGIYAVCVNPYHVKLASS-IA-KKVKVCCVI--GFPL 64 (225) T ss_dssp HHHHHHHH---TTCSEEEECGGGHHHHHH-HC-SSSEEEEEE--STTT T ss_pred HHHHHHHH---HCCCEEEECHHHHHHHHH-HC-CCCCEEEEE--ECCC T ss_conf 99999998---599889988899999998-57-898248887--4799 No 311 >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} SCOP: c.79.1.1 Probab=29.85 E-value=25 Score=14.59 Aligned_cols=149 Identities=10% Similarity=0.092 Sum_probs=79.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEE-ECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE-ECCCCEEE Q ss_conf 753140785035788636886-2120456788999985399589980588468889999998401771894-06851013 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVI-YVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI-GPNCPGIL 133 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI-~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii-GPNc~Gii 133 (300) .+.++-+.+|.++......|| ..-..+....+.-|...|+|..+++.++.+.... +..|..|..++ -|...+.. T Consensus 129 R~A~~~I~~A~~~~~~g~tVveaSSGN~G~AlA~~aa~~Gik~~IvmP~~~s~~k~----~~lra~GAeVi~~p~~~~~~ 204 (389) T 1wkv_A 129 RPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGK----LLPRLLGAQVIVDPEAPSTV 204 (389) T ss_dssp HHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHH----HHHHHTTCEEEEETTCSSSG T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHH----HHHHHCCCCEEECCCCCCHH T ss_conf 99999999998607999999985840999999999998199689996360254899----99985698558658653257 Q ss_pred CC-CC-HHC----CE-ECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCHHHHHHHHH-CCC Q ss_conf 55-51-000----20-011235778679998054147899999997199516764-05567446789999999997-399 Q gi|254781050|r 134 TP-DS-CKI----GI-MPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAV-GIGGDPVKGTEFIDVLELFL-ADE 204 (300) Q Consensus 134 ~p-~~-~~l----gi-~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~V-siG~D~~~G~~~~d~L~~~~-~Dp 204 (300) .- .+ .+. +. .+.....|. -+...-.+++.|+..++...+.-+..++ ++|+ |..+.=+-.+|. .+| T Consensus 205 ~~~~ra~~~a~~~~~~~~~q~~N~~--n~~~h~~ttg~EI~eQl~~~g~~~d~vv~~vGt----GG~~~Gi~~~lk~~~p 278 (389) T 1wkv_A 205 HLLPRVMKDSKNEGFVHVNQFYNDA--NFEAHMRGTAREIFVQSRRGGLALRGVAGSLGT----SGHMSAAAFYLQSVDP 278 (389) T ss_dssp GGHHHHHHHHHHHCCEECCTTTCHH--HHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSS----SHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC----CCCHHHHHHHHHECCC T ss_conf 8999999986503775455566850--044442029999999845579844799982699----7108886464511089 Q ss_pred CCCEEEEEEE Q ss_conf 8728899970 Q gi|254781050|r 205 ATESIVMVGE 214 (300) Q Consensus 205 ~T~~Ivl~gE 214 (300) +|+.|.+--+ T Consensus 279 ~vkiVgVeP~ 288 (389) T 1wkv_A 279 SIRAVLVQPA 288 (389) T ss_dssp TCEEEEEEEC T ss_pred CCEEEEEECC T ss_conf 9879999747 No 312 >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Probab=29.80 E-value=23 Score=14.92 Aligned_cols=34 Identities=15% Similarity=-0.091 Sum_probs=18.7 Q ss_pred CCCCCEEEEEEC-CCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 577867999805-414789999999719951676405 Q gi|254781050|r 148 FRKGSVGILSRS-GTLTYEAVFQTSQEGLGQSTAVGI 183 (300) Q Consensus 148 ~~pG~VgivSqS-G~l~~e~~~~~~~~g~G~S~~Vsi 183 (300) ..|.+|++...| |++. +...+.++--=|..+|+. T Consensus 586 ~d~~rl~i~GgS~GG~l--~~a~l~~~Pdlf~a~v~~ 620 (751) T 2xe4_A 586 TTPSQLACEGRSAGGLL--MGAVLNMRPDLFKVALAG 620 (751) T ss_dssp CCGGGEEEEEETHHHHH--HHHHHHHCGGGCSEEEEE T ss_pred CCCCEEEEEEECHHHHH--HHHHHHCCCCCEEEEEEC T ss_conf 88276999988989999--999986497724799957 No 313 >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Probab=29.57 E-value=26 Score=14.56 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=28.2 Q ss_pred HCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 53995899805884------688899999984017718940685101 Q gi|254781050|r 92 EAEIPLIVCITEGI------PVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 92 ~agik~iviiteGi------p~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) +..++++++.+-+- +..+..+|.++|+++++.||==.|-.- T Consensus 162 ~~~~k~i~l~nP~NPTG~v~s~e~~~~i~~~a~~~~~~vi~De~Y~~ 208 (399) T 1c7n_A 162 DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFD 208 (399) T ss_dssp CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTT T ss_pred CCCCEEEEECCCCCCCCHHCCHHHHHHHHHCCCCCEEEEECCCCCHH T ss_conf 89975999798959778317899999988412454368851344101 No 314 >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structural genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 Probab=28.90 E-value=26 Score=14.49 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=27.5 Q ss_pred CHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEECCCCCH Q ss_conf 07850357886368862120456788999985----399589980588468 Q gi|254781050|r 61 TVAEAKERTAANASVIYVPPSGAGDAIIESIE----AEIPLIVCITEGIPV 107 (300) Q Consensus 61 sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~----agik~iviiteGip~ 107 (300) -+.||.+. +...+-++|+|.+++-+-...-+ .+++...+| |||. T Consensus 53 lc~eA~~~-~~~~AaVCV~P~~V~~a~e~l~~~~~gs~vkv~tVv--gFP~ 100 (281) T 2a4a_A 53 LCNESVKT-CPFAAAVCVYPKFVKFINEKIKQEINPFKPKIACVI--NFPY 100 (281) T ss_dssp HHHHHHSS-SSCCSEEEECGGGHHHHHHHHHHHSSSCCSEEEEEE--STTT T ss_pred HHHHHHHH-CCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEE--CCCC T ss_conf 99999986-796599996878899999998741478886278870--6898 No 315 >1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison,; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A* Probab=28.88 E-value=26 Score=14.49 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=45.0 Q ss_pred HHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE---EEECCC-CCCCCCEEEEECCCCCCCHHH Q ss_conf 9999997399872889997058724899999999864226755268998---430157-655322001122488889999 Q gi|254781050|r 195 DVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFV---AGKTAP-PGRTMGHAGAVISGGKGGAED 270 (300) Q Consensus 195 d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~---~GrtAp-~g~~~gHaGAi~~~~~g~a~~ 270 (300) +.++.+.+ ...+.||+.+-=-|+.-.+..++++.+.+ ...|||.-- .|+..+ .+......|.|.++......+ T Consensus 226 ~~~~~~~~-~~~~GiVl~g~G~G~~~~~~~~~l~~a~~--~gi~vv~~sq~~~G~v~~~~~~~~~~~Gvi~~g~lt~e~A 302 (326) T 1nns_A 226 LPAKALVD-AGYDGIVSAGVGNGNLYKSVFDTLATAAK--TGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKA 302 (326) T ss_dssp HHHHHHHH-TTCSEEEEEEBTTTBCCHHHHHHHHHHHH--TTCEEEEEESSSSSCBCSSSSSCHHHHTEEECBTCCHHHH T ss_pred HHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCEEEEEECCCCEEECCCCCCCHHHCCEEECCCCCHHHH T ss_conf 99999987-79988999876798899899999999986--6998999803881027866445720189898999899999 Q ss_pred --HHH-HHHHCCCEECCCHHHHHHHH Q ss_conf --999-99988975788989999999 Q gi|254781050|r 271 --KIN-AMKEAGICIAPSPARIGRSL 293 (300) Q Consensus 271 --k~~-al~~aGv~v~~s~~el~~~l 293 (300) |.. +|.+ ..+++|+-+++ T Consensus 303 ~ikL~~aL~~-----~~~~~ei~~~f 323 (326) T 1nns_A 303 RVLLQLALTQ-----TKDPQQIQQIF 323 (326) T ss_dssp HHHHHHHTTT-----CCCHHHHHHHH T ss_pred HHHHHHHHHC-----CCCHHHHHHHH T ss_conf 9999999808-----99999999999 No 316 >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Probab=28.64 E-value=27 Score=14.46 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=83.2 Q ss_pred CCCCCCCCCCCCHHHHCCCCCC-CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 2774577531407850357886-368862120456788999985399589980588468889999998401771894068 Q gi|254781050|r 50 TGGNVNVPVFTTVAEAKERTAA-NASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPN 128 (300) Q Consensus 50 ~g~~~~iPvy~sv~ea~~~~~~-D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPN 128 (300) .++..++|+|+.+........+ ...+..-++....+.+.++.+.|.+.+-+-...-++.|..++.++-+. +||+ T Consensus 115 ~gK~~~~Pl~~LlGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Kik~~~~~~~d~~~i~~vr~~-----~g~~ 189 (378) T 3eez_A 115 AGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDI-----REPG 189 (378) T ss_dssp HHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHHTTS-----CCTT T ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHH-----HCCC T ss_conf 86363981789627875544432122466778999999999997187243045689879999999999986-----2576 Q ss_pred CCEEECCCCHHC---CEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 510135551000---20011235778679998054147899999997199516764055674467899999999973998 Q gi|254781050|r 129 CPGILTPDSCKI---GIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEA 205 (300) Q Consensus 129 c~Gii~p~~~~l---gi~p~~~~~pG~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~ 205 (300) +.=.+.++..+- .+.-.+...+=++-++=|--. .+-+..+.+. . +.-+..| +.+ .+..|+.++++. .. T Consensus 190 ~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~~E~P~~--~d~~~~l~~~-~--~~pia~~-E~~--~~~~~~~~~~~~-~~ 260 (378) T 3eez_A 190 EIVLYDVNRGWTRQQALRVMRATEDLHVMFEQPGET--LDDIAAIRPL-H--SAPVSVD-ECL--VTLQDAARVARD-GL 260 (378) T ss_dssp CEEEEECTTCCCHHHHHHHHHHTGGGTCCEECCSSS--HHHHHHTGGG-C--CCCEEEC-TTC--CSHHHHHHHHHT-TC T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCEEEEECCCH--HHHHHHHHHC-C--CCCCCCC-CCE--EEHHHHHHHHHC-CC T ss_conf 368603665548999999998776559007805116--7899987621-4--7886566-522--202567899972-88 Q ss_pred CCEEEEE-EECCCHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 7288999-70587248999999998642267552689 Q gi|254781050|r 206 TESIVMV-GEIGGSAEEEAAQFLKDEAKRGRKKPIVG 241 (300) Q Consensus 206 T~~Ivl~-gEiGG~~E~~aa~fi~~~~~~~~~KPVva 241 (300) .+.+.+= .-.||..+ +.+..+.+. ....++.. T Consensus 261 ~di~~~d~~~~GGit~--~~~i~~~a~--~~g~~~~~ 293 (378) T 3eez_A 261 AEVFGIKLNRVGGLTR--AARMRDIAL--THGIDMFV 293 (378) T ss_dssp CSEEEEEHHHHTSHHH--HHHHHHHHH--HTTCEEEE T ss_pred CCCCCCCCCEECCHHH--HHHHHHHHH--HCCCCEEE T ss_conf 5202545552315229--999999999--86996897 No 317 >1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2 Probab=28.60 E-value=27 Score=14.46 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=29.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHHHHHHHHHHCC Q ss_conf 1204567889999853995899805----884688899999984017 Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCIT----EGIPVLDMVRVKARLEKS 120 (300) Q Consensus 78 VP~~~v~dai~Ea~~agik~iviit----eGip~~d~~~l~~~A~~~ 120 (300) +..+...+++.++.+.|++.++++. .|.--+|..+.++.+++. T Consensus 57 ~~~p~~~~al~~l~~~G~~~i~V~Pl~l~~G~~~~di~~~~~~~~~~ 103 (264) T 1qgo_A 57 IDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRPL 103 (264) T ss_dssp CCCCCHHHHHHHHHHTTCCEEEEEECCSBCSHHHHHHHHHHHHHGGG T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 77999999999999779977999874034632599999999987753 No 318 >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} Probab=28.46 E-value=27 Score=14.44 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHC----------CCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEEECCCCE Q ss_conf 4567889999853----------995899805----88468889999998401771894068510 Q gi|254781050|r 81 SGAGDAIIESIEA----------EIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLIGPNCPG 131 (300) Q Consensus 81 ~~v~dai~Ea~~a----------gik~iviit----eGip~~d~~~l~~~A~~~g~riiGPNc~G 131 (300) .+-++.+.++++. ..+ ++++| +|+. .|..++.++|++++.+++==..-| T Consensus 289 ~~~~e~i~~~I~~~p~~~~~~~~~~~-~vvit~~TYdG~~-~dl~~I~~l~~~~~~~llvDEAhg 351 (755) T 2vyc_A 289 EMQPETLQKKISESPLTKDKAGQKPS-YCVVTNCTYDGVC-YNAKEAQDLLEKTSDRLHFDEAWY 351 (755) T ss_dssp GGSHHHHHHHHHHCTTTGGGTTCCCS-CEEEESSCTTSEE-ECHHHHHHHHTTTCSEEEEECTTC T ss_pred CCCHHHHHHHHHHCCHHHHHCCCCCC-EEEEECCCCCCCC-CCHHHHHHHHHHCCCEEEECCHHH T ss_conf 37999999999869243454147885-8999657768650-699999999987299389642422 No 319 >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} SCOP: c.67.1.9 Probab=28.22 E-value=27 Score=14.42 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=43.6 Q ss_pred CCCCHHHHCCCCCCCEEEEECCHH-------HHHHHHHHHHH----CC-CCEEEEECCCCC---HHHHHHHHHHHHCCCC Q ss_conf 314078503578863688621204-------56788999985----39-958998058846---8889999998401771 Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPS-------GAGDAIIESIE----AE-IPLIVCITEGIP---VLDMVRVKARLEKSSS 122 (300) Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~-------~v~dai~Ea~~----ag-ik~iviiteGip---~~d~~~l~~~A~~~g~ 122 (300) -+.|+-.+... ..+-.++||+. .-++.++++++ ++ +..++..+.-++ ..|..+|.++|+++|+ T Consensus 185 ~h~S~~kai~~--~G~~~~~v~~~~~~~~~~~d~~~le~~i~~~~~~~~~~~v~~t~~~~~~g~~~di~~I~~l~~~~~i 262 (456) T 2z67_A 185 SHKSPIKAVSF--VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI 262 (456) T ss_dssp CCHHHHHHHHH--TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC T ss_pred CHHHHHHHHHH--CCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEECCHHHHHHHHHHHCC T ss_conf 43999999998--4991799875654855677999999999855144864899972476798155489999999998499 Q ss_pred EEEECCCCEEEC Q ss_conf 894068510135 Q gi|254781050|r 123 RLIGPNCPGILT 134 (300) Q Consensus 123 riiGPNc~Gii~ 134 (300) .++==||.|.-. T Consensus 263 ~livD~A~g~~~ 274 (456) T 2z67_A 263 PHIINGAYAIQN 274 (456) T ss_dssp CEEEECTTTTTC T ss_pred EEEEECCCCCCC T ss_conf 799967553213 No 320 >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 Probab=28.18 E-value=17 Score=15.66 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=24.6 Q ss_pred CHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 07850357886368862120456788999985399589980588468 Q gi|254781050|r 61 TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPV 107 (300) Q Consensus 61 sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~ 107 (300) -+.||.+ -+.+-++|||.+++.+... + ++++...++ |||. T Consensus 22 ~~~~A~~---~~~aaVCV~p~~v~~a~~~-l-~~~~v~tVi--gFP~ 61 (226) T 1vcv_A 22 GARKAEE---LGVAAYCVNPIYAPVVRPL-L-RKVKLCVVA--DFPF 61 (226) T ss_dssp HHHHHHH---HTCSEEEECGGGHHHHGGG-C-SSSEEEEEE--STTT T ss_pred HHHHHHH---HCCEEEEECHHHHHHHHHH-H-CCCCEEEEE--ECCC T ss_conf 9999998---6981999888999999998-3-689737886--3699 No 321 >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Probab=27.79 E-value=27 Score=14.37 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=13.0 Q ss_pred HHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 84017718940685101355510002001 Q gi|254781050|r 116 RLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 116 ~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ++-....|+..+++. +..| ..++|+.| T Consensus 118 lal~~D~ria~~~a~-f~~~-~~~~g~~p 144 (269) T 1nzy_A 118 ISLASDMAICADSAK-FVCA-WHTIGIGN 144 (269) T ss_dssp HHHHSSEEEEETTCE-EECC-HHHHTCCC T ss_pred HHHCCCHHHHHHHHC-CCCC-CCEEECCC T ss_conf 554121445645301-1476-54262157 No 322 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Probab=27.75 E-value=28 Score=14.36 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=31.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEE Q ss_conf 67889999853995899805884688899999984017718940685101 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGI 132 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gi 132 (300) ..+++..|.++|++.+=+.-+-+...+..+++++++++|+++.+=++.+. T Consensus 21 l~e~l~~~a~~G~~~IEl~~~~~~~~~~~e~~~~l~~~gl~v~~~~~~~~ 70 (284) T 3ju2_A 21 FAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGF 70 (284) T ss_dssp HHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHTTCEESCEEEEEC T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC T ss_conf 99999999981999899777667878999999999983995999876766 No 323 >3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Probab=27.67 E-value=28 Score=14.35 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=31.8 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88999985399589980588468889999998401771894 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +.+.+++..|--.+|++++..|+.-..++..+|+.+++-++ T Consensus 27 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~Vpv~ 67 (110) T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVY 67 (110) T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEE T ss_conf 99999998199719999687998999999999997596799 No 324 >1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3n4z_A 2bo1_A Probab=27.65 E-value=28 Score=14.35 Aligned_cols=41 Identities=5% Similarity=-0.105 Sum_probs=30.6 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 88999985399589980588468889999998401771894 Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLI 125 (300) Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~rii 125 (300) +.+.+++..|-..+|++++..|..-..++..+|+.+++-++ T Consensus 22 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~ 62 (101) T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVY 62 (101) T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEE T ss_conf 99999998398529999798998999999999983599759 No 325 >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Probab=27.58 E-value=28 Score=14.34 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=50.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC--------------EEECCCCCCCCCCCCHHHHCCCCCCCEE Q ss_conf 73999888843779999999862698189976589988--------------6872774577531407850357886368 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGS--------------TYWTGGNVNVPVFTTVAEAKERTAANAS 74 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg--------------~~~~g~~~~iPvy~sv~ea~~~~~~D~a 74 (300) +||||-|.||--|+.-+++.++. |-+|++-.+-.+.+ ..+.++ +--++++.++.+...+|.- T Consensus 2 ~KILVTGgtGfIG~~lv~~Ll~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~i~~D---i~d~~~l~~~~~~~~~D~V 77 (347) T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGD---IRNKNDVTRLITKYMPDSC 77 (347) T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECC---TTCHHHHHHHHHHHCCSEE T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECC---CCCHHHHHHHHHHCCCCEE T ss_conf 88999288748999999999978-3989999798866516678875027981899761---6898999998743267479 Q ss_pred EEEC----CHHH------HHH-------HHHH-HHHCCCCEEEEECC Q ss_conf 8621----2045------678-------8999-98539958998058 Q gi|254781050|r 75 VIYV----PPSG------AGD-------AIIE-SIEAEIPLIVCITE 103 (300) Q Consensus 75 vI~V----P~~~------v~d-------ai~E-a~~agik~iviite 103 (300) +-+. ++.. ..+ .++| |...+++..++++. T Consensus 78 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~~~sS 124 (347) T 1orr_A 78 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347) T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 98233233122234878877549999999999876413556656666 No 326 >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Probab=27.48 E-value=28 Score=14.33 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=93.9 Q ss_pred CCCEEEEECCCCHHHHHHHHHH--------HHHCCC--CEEEEE--CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEE Q ss_conf 7973999888843779999999--------862698--189976--5899886872774577531407850357886368 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQA--------ILYCQT--QVVGGI--HPKKGSTYWTGGNVNVPVFTTVAEAKERTAANAS 74 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~--------~~y~gt--~ivagV--~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~a 74 (300) |.-||.+-|+ |.-|+-..++. ..+ |. +|++-. ++.|.-.. ..+.+..+...|..+..++|+- T Consensus 9 k~i~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~-g~~i~v~~i~~~~~~k~~~~----~~~~~~~~~~~~~~~~~~idiv 82 (444) T 3mtj_A 9 KPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRA-GREIRVVRAAVRNLDKAEAL----AGGLPLTTNPFDVVDDPEIDIV 82 (444) T ss_dssp SCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHH-SSCEEEEEEECSCHHHHHHH----HTTCCEESCTHHHHTCTTCCEE T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCHHHCC----CCCCCCCCCHHHHHCCCCCCEE T ss_conf 7724899850-8899999999998699999973-99669999996077210025----5787672899998358799999 Q ss_pred EEECCH-HHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHCCCCEEEECCCCEEECC--CCHHCCEECCCCCC Q ss_conf 862120-45678899998539958998058846--88899999984017718940685101355--51000200112357 Q gi|254781050|r 75 VIYVPP-SGAGDAIIESIEAEIPLIVCITEGIP--VLDMVRVKARLEKSSSRLIGPNCPGILTP--DSCKIGIMPGSIFR 149 (300) Q Consensus 75 vI~VP~-~~v~dai~Ea~~agik~iviiteGip--~~d~~~l~~~A~~~g~riiGPNc~Gii~p--~~~~lgi~p~~~~~ 149 (300) |=.... ..+.+.+..|+++|.. ++|..-. ...-.+|.+.|+++|..+.=--+.|-=.| ...+- ... T Consensus 83 Ve~~gg~~~a~~~~~~al~~G~~---VVTANK~~~a~~~~eL~~~a~~~~~~~~yEasVggGiPiI~~l~~------~l~ 153 (444) T 3mtj_A 83 VELIGGLEPARELVMQAIANGKH---VVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALRE------GLT 153 (444) T ss_dssp EECCCSSTTHHHHHHHHHHTTCE---EEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHT------TTT T ss_pred EECCCCCHHHHHHHHHHHHCCCC---EEECCHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEEEEEHHHHH------HCC T ss_conf 99289963799999999862883---674233678878999999999809889867667884224088874------234 Q ss_pred CCCEEEEE--ECCCHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 78679998--05414789999999719951676405 Q gi|254781050|r 150 KGSVGILS--RSGTLTYEAVFQTSQEGLGQSTAVGI 183 (300) Q Consensus 150 pG~VgivS--qSG~l~~e~~~~~~~~g~G~S~~Vsi 183 (300) .-.|-=|. =|||+.| ++.++...|..|+.++-- T Consensus 154 gd~I~~i~GIlNGT~Ny-Ilt~m~~~g~~f~eal~e 188 (444) T 3mtj_A 154 ANRIEWLAGIINGTSNF-ILSEMRDKGAAFDDVLKE 188 (444) T ss_dssp TSCEEEEEEECCHHHHH-HHHHHHHHCCCHHHHHHH T ss_pred CCCCCEEEEEECCHHHH-HHHHHHCCCCCHHHHHHH T ss_conf 34750135540767899-988876279997999999 No 327 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=27.23 E-value=28 Score=14.31 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=18.6 Q ss_pred EEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 86212045678899998539958998058846888999999840177189406 Q gi|254781050|r 75 VIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 75 vI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGP 127 (300) +|.+--+.-.+.+.+ +.. -.=|||.-+|.+ +.+++. ++++.|++=| T Consensus 267 IVA~N~~vd~~~A~~-I~~--F~EvIIAP~f~~-eALeiL---~kKk~~~l~~ 312 (464) T 1zcz_A 267 ILAVNFEMDEEVAKS-LKK--YLEVIVAPSFTQ-EAIEVL---SKKKVRLLKP 312 (464) T ss_dssp EEEESSCBCHHHHHH-CCS--CEEEEECSCBCH-HHHHHH---TTSSCEEEEE T ss_pred EEEECCCHHHHHHHH-HHH--CEEEEECCCCCH-HHHHHH---HHCCCHHHCC T ss_conf 899777126899999-764--349998289898-999998---6017201023 No 328 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=27.17 E-value=28 Score=14.30 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=72.2 Q ss_pred CCCCHHHHCCCCCCCEEEEECCHH----HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC---- Q ss_conf 314078503578863688621204----567889999853995899805884688899999984017718940685---- Q gi|254781050|r 58 VFTTVAEAKERTAANASVIYVPPS----GAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNC---- 129 (300) Q Consensus 58 vy~sv~ea~~~~~~D~avI~VP~~----~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc---- 129 (300) +..-+.++.++.+.++-++..... .-.+.+.+++..++..+++.+-.- ......++.+++.|+.++-=|+ T Consensus 25 v~~G~~~aa~~~g~~~~~~~~~~~~d~~~q~~~i~~li~~~~dgIii~~~~~--~~~~~~l~~a~~~gIpvv~~d~~~~~ 102 (289) T 3brs_A 25 LVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY--EKTYDAAKEIKDAGIKLIVIDSGMKQ 102 (289) T ss_dssp HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT--TTTHHHHTTTGGGTCEEEEESSCCSS T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9999999999829989999689988999999999999976999999968841--53699999999759987999514566 Q ss_pred ---CEEECCCCHHCCEEC-----CCCCCCCCEEEEEEC-CCHHH-----HHHHHHHHCCCCEEEEEECCCCCCCCCCHHH Q ss_conf ---101355510002001-----123577867999805-41478-----9999999719951676405567446789999 Q gi|254781050|r 130 ---PGILTPDSCKIGIMP-----GSIFRKGSVGILSRS-GTLTY-----EAVFQTSQEGLGQSTAVGIGGDPVKGTEFID 195 (300) Q Consensus 130 ---~Gii~p~~~~lgi~p-----~~~~~pG~VgivSqS-G~l~~-----e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d 195 (300) ...+.++....|.+- ....+++.|++++-. +.... .....+...+.-+......+.+.. ..... T Consensus 103 ~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 180 (289) T 3brs_A 103 DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYD--KAYDG 180 (289) T ss_dssp CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHH--HHHHH T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH--HHHHH T ss_conf 6764599966189999999999863379976999957778840989999999999865996037883156406--68999 Q ss_pred HHHHHHCCCCCCEEEE Q ss_conf 9999973998728899 Q gi|254781050|r 196 VLELFLADEATESIVM 211 (300) Q Consensus 196 ~L~~~~~Dp~T~~Ivl 211 (300) ...++..+|+.++|+- T Consensus 181 ~~~~l~~~~~~~~I~~ 196 (289) T 3brs_A 181 TVELLTKYPDISVMVG 196 (289) T ss_dssp HHHHHHHCTTEEEEEE T ss_pred HHHHHHCCCCCCEEEC T ss_conf 9998713898648981 No 329 >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Probab=26.61 E-value=29 Score=14.24 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 399988884377999999986269818997658 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP 42 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P 42 (300) ||+|-|.||--|+.-+++.++. |.++|.++.. T Consensus 2 KILVtGatGfiGs~l~~~Ll~~-g~~~vi~id~ 33 (361) T 1kew_A 2 KILITGGAGFIGSAVVRHIIKN-TQDTVVNIDK 33 (361) T ss_dssp EEEEESTTSHHHHHHHHHHHHH-CSCEEEEEEC T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEC T ss_conf 6999888868999999999978-9968999847 No 330 >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} SCOP: c.1.9.12 Probab=26.60 E-value=29 Score=14.23 Aligned_cols=37 Identities=3% Similarity=0.230 Sum_probs=27.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 678899998539958998058846888999999840177 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) ..+++.+|.++||..+++++.. ..+-.++.++++++. T Consensus 22 ~~~vi~~a~~~gv~~ii~~~~~--~~~~~~~~~l~~~~~ 58 (265) T 1yix_A 22 VDDVLAKAAARDVKFCLAVATT--LPSYLHMRDLVGERD 58 (265) T ss_dssp HHHHHHHHHHTTEEEEEECCSS--HHHHHHHHHHHCSCT T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC T ss_conf 9999999998599899994289--999999999997489 No 331 >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 1g6c_A* 1g4e_A* 1g69_A* 1g4s_A* 1g4p_A* 1g67_A* Probab=26.59 E-value=29 Score=14.23 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=28.7 Q ss_pred HHHHHHHHHCCCCEEEEEC---CCCCH----HHHHHHHHHHHCCCCEEEECC Q ss_conf 7889999853995899805---88468----889999998401771894068 Q gi|254781050|r 84 GDAIIESIEAEIPLIVCIT---EGIPV----LDMVRVKARLEKSSSRLIGPN 128 (300) Q Consensus 84 ~dai~Ea~~agik~iviit---eGip~----~d~~~l~~~A~~~g~riiGPN 128 (300) .+.+.+++++|++.+..=- ..... ....++.+++++++++++=-+ T Consensus 34 ~~~v~~al~~Gv~~vqlR~K~~~~~~~~~~~~la~~l~~~~~~~~~~liInd 85 (227) T 2tps_A 34 VTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVND 85 (227) T ss_dssp HHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEES T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECC T ss_conf 9999999988998999867998868899999999999999998299799858 No 332 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Probab=26.35 E-value=29 Score=14.20 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=65.1 Q ss_pred EEEEECCCCCCEEECCCCC--CCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH Q ss_conf 8997658998868727745--77531407850357886368862120456788999985399589980588468889999 Q gi|254781050|r 36 VVGGIHPKKGSTYWTGGNV--NVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRV 113 (300) Q Consensus 36 ivagV~Pgkgg~~~~g~~~--~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l 113 (300) |-+-|.|..=|.+.-++++ +.|- +.+-......|-. .. ...+.+-+.++.++|++.+|=.|-----+|...| T Consensus 22 V~G~i~~~~lG~tl~HEHl~~~~~~---~~~~~~~~~~d~~--~~-~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l 95 (339) T 3gtx_A 22 VTGAVAAAQLGATLPHEHVIFGYPG---YAGDVTLGPFDHA--AA-LASCTETARALLARGIQTVVDATPNGCGRNPAFL 95 (339) T ss_dssp TTEEECGGGCCEEEEEEEEEECCTT---GGGGTTTSCCCHH--HH-HHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHH T ss_pred ECCCCCHHHCCCCCCCCCEECCCHH---HHCCCCCCCCCHH--HH-HHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH T ss_conf 6897888997285003283317824---4222565753356--78-9999999999997189879976888767799999 Q ss_pred HHHHHCCCCEEEECCCCEEEC----CCC----------------------HHCCEECCCCCCCCCEEEEEECCCHH Q ss_conf 998401771894068510135----551----------------------00020011235778679998054147 Q gi|254781050|r 114 KARLEKSSSRLIGPNCPGILT----PDS----------------------CKIGIMPGSIFRKGSVGILSRSGTLT 163 (300) Q Consensus 114 ~~~A~~~g~riiGPNc~Gii~----p~~----------------------~~lgi~p~~~~~pG~VgivSqSG~l~ 163 (300) +++++++|+.|+.- .|+.- |.. ..-| +.....++|-|+...-+..++ T Consensus 96 ~~is~~tgv~Iv~~--tG~y~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ei~~G-i~~t~ikaGvI~~~~~~~~~t 168 (339) T 3gtx_A 96 REVSEATGLQILCA--TGFYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEG-IAGTGIRAGVIKLASSRDAIT 168 (339) T ss_dssp HHHHHHHCCEEECE--ECCCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTC-STTSSCCCSEEEEECCSSCCC T ss_pred HHHHHHCCCCEEEE--EEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHH-HCCCCCCCEEEEEECCCCCCC T ss_conf 99998649718995--10010576775555613433124999999999999865-135676720899835689999 No 333 >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Probab=26.30 E-value=29 Score=14.20 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=22.0 Q ss_pred CCCEEEEECCHHHH---HHHHHHHHH-CCCCEEEEECCCC Q ss_conf 86368862120456---788999985-3995899805884 Q gi|254781050|r 70 AANASVIYVPPSGA---GDAIIESIE-AEIPLIVCITEGI 105 (300) Q Consensus 70 ~~D~avI~VP~~~v---~dai~Ea~~-agik~iviiteGi 105 (300) .++-+||.||+.|- ..++.+|++ ||++.+-+|.|.. T Consensus 138 ~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~linEpt 177 (554) T 1yuw_A 138 TVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPT 177 (554) T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECHHH T ss_conf 9773999999999999999999999986995789825679 No 334 >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Probab=26.19 E-value=29 Score=14.19 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=10.6 Q ss_pred EEEEEECCCHHHHHHHHHHHCC Q ss_conf 7999805414789999999719 Q gi|254781050|r 153 VGILSRSGTLTYEAVFQTSQEG 174 (300) Q Consensus 153 VgivSqSG~l~~e~~~~~~~~g 174 (300) |-+...+|+++..+...+...| T Consensus 129 Vli~g~~g~vG~~aiqlak~~G 150 (302) T 1iz0_A 129 VLVQAAAGALGTAAVQVARAMG 150 (302) T ss_dssp EEESSTTBHHHHHHHHHHHHTT T ss_pred EEEECCCCHHHHHHHHHHHHCC T ss_conf 9992584399999999999869 No 335 >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Probab=26.05 E-value=29 Score=14.17 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=11.9 Q ss_pred HHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 4017718940685101355510002001 Q gi|254781050|r 117 LEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 117 A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) +-....|+..+++. +-.| ..++|+.| T Consensus 126 al~~D~~ia~~~a~-f~~p-e~~~G~~p 151 (264) T 3he2_A 126 AMQCDLRVVAPDAF-FQFP-TSKYGLAL 151 (264) T ss_dssp HHHSSEEEECTTCE-EECT-HHHHTCCC T ss_pred HHHCCEEEEECCCC-CCCC-CCCEEECC T ss_conf 98446665203444-5474-01230067 No 336 >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} Probab=25.87 E-value=30 Score=14.15 Aligned_cols=49 Identities=6% Similarity=0.013 Sum_probs=36.6 Q ss_pred CCEEEEECCHHH-------------HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 636886212045-------------678899998539958998058846888999999840177 Q gi|254781050|r 71 ANASVIYVPPSG-------------AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 71 ~D~avI~VP~~~-------------v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) +|..+...-+.| ..+++.+|.++||+.+++++.. ..+..+.+++|+++. T Consensus 29 iDi~~nlt~~~f~g~y~g~~~h~~Dl~~Vl~rA~~~gV~~ii~~g~~--~~~~~~a~~La~~~~ 90 (325) T 3ipw_A 29 IDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGC--LNDFKKAIEIINKYQ 90 (325) T ss_dssp EEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCS--HHHHHHHHHHHHHHG T ss_pred EEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC T ss_conf 89987889967678657764770269999999998699989992399--999999999998677 No 337 >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinone reduction, structural genomics, structural genomics consortium, SGC; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Probab=25.78 E-value=30 Score=14.14 Aligned_cols=13 Identities=0% Similarity=0.222 Sum_probs=5.6 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999998 Q gi|254781050|r 285 SPARIGRSLVELL 297 (300) Q Consensus 285 s~~el~~~l~~~l 297 (300) .++|+.+.+..++ T Consensus 326 ~l~d~~eA~~~~~ 338 (351) T 1yb5_A 326 PLEKVAEAHENII 338 (351) T ss_dssp EGGGHHHHHHHHH T ss_pred EHHHHHHHHHHHH T ss_conf 2999999999998 No 338 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Probab=25.73 E-value=30 Score=14.13 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC----------------CHHHHHHHHHHHHCCCCEEEEC-----------CCCEEE Q ss_conf 4567889999853995899805884----------------6888999999840177189406-----------851013 Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGI----------------PVLDMVRVKARLEKSSSRLIGP-----------NCPGIL 133 (300) Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGi----------------p~~d~~~l~~~A~~~g~riiGP-----------Nc~Gii 133 (300) ..+.+.+.||.+.|.. +|++.|-. +-....++.++|+++++-++.. ||.=++ T Consensus 22 ~~~~~~i~~A~~~gad-lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~yNs~~~i 100 (276) T 2w1v_A 22 TRACSLVREAAKQGAN-IVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVF 100 (276) T ss_dssp HHHHHHHHHHHHTTCS-EEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEETTEEEEEEEEE T ss_pred HHHHHHHHHHHHCCCE-EEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEC T ss_conf 9999999999988396-999887864689878999877767899999999999866987999653120158630132220 Q ss_pred CCC Q ss_conf 555 Q gi|254781050|r 134 TPD 136 (300) Q Consensus 134 ~p~ 136 (300) .|+ T Consensus 101 ~~~ 103 (276) T 2w1v_A 101 GPD 103 (276) T ss_dssp CTT T ss_pred CCC T ss_conf 688 No 339 >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis} Probab=25.36 E-value=30 Score=14.09 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=25.4 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEEC Q ss_conf 999853995899805884688899999984017718940685101355510002001 Q gi|254781050|r 88 IESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMP 144 (300) Q Consensus 88 ~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p 144 (300) ...+..--+.+|..-.|...---.+ ++--...|+..+++- +-.| ..++|+.| T Consensus 91 ~~~i~~~~kPvIaav~G~a~GgG~~---lal~~D~ria~~~a~-f~~p-e~~~Gl~p 142 (254) T 3isa_A 91 LQRVAGSPSLTLALAHGRNFGAGVD---LFAACKWRYCTPEAG-FRMP-GLKFGLVL 142 (254) T ss_dssp HHHHHTCSSEEEEEECSEEETHHHH---HHHHSSEEEECTTCE-EECC-GGGGTCCC T ss_pred HHHHHHCCCCEEEECCCCEEECCCC---CCCCCCEEEECCCCC-CCCC-CEEEEECC T ss_conf 9999858998999679718764762---355577689765435-5575-10250057 No 340 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=25.15 E-value=31 Score=14.06 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=16.6 Q ss_pred CCCCH--HHHHHHHHHHHCCCCEEE-ECCCCEEE Q ss_conf 88468--889999998401771894-06851013 Q gi|254781050|r 103 EGIPV--LDMVRVKARLEKSSSRLI-GPNCPGIL 133 (300) Q Consensus 103 eGip~--~d~~~l~~~A~~~g~rii-GPNc~Gii 133 (300) ||+|. .-...+....+..|+.++ =||+.-++ T Consensus 182 eHi~dp~~fl~~i~~~L~~~G~~~ievp~~~~~~ 215 (416) T 3ndi_A 182 CHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIV 215 (416) T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHH T ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHC T ss_conf 3150289999999987466876999816503211 No 341 >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Probab=24.68 E-value=31 Score=14.01 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=48.5 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE--ECCCCCCCCCEE-EEECCCC- Q ss_conf 678999999999739987288999705872489999999986422675526899843--015765532200-1122488- Q gi|254781050|r 189 KGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAG--KTAPPGRTMGHA-GAVISGG- 264 (300) Q Consensus 189 ~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~G--rtAp~g~~~gHa-GAi~~~~- 264 (300) +|..+.-.+-.-...|+.+++++.|. |..-.+.-++.-. ...+.|++.++-- ...-....+-.. +...+.. T Consensus 415 mG~~l~~AiGa~~a~p~~~vv~i~GD--gsf~~~~~eL~ta---~~~~lpi~ivV~NN~g~g~i~~~~~~~~~~~~~~~~ 489 (590) T 1v5e_A 415 MGIAIPGGLGAKNTYPDRQVWNIIGD--GAFSMTYPDVVTN---VRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDF 489 (590) T ss_dssp TTCHHHHHHHHHHHCTTSCEEEEEEH--HHHHHHGGGHHHH---HHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCC T ss_pred CCCCCCHHHHHHHHCCCCEEEEEECC--HHHHCCHHHHHHH---HHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC T ss_conf 54476298999984987849986377--0553468999999---974899489999878444332877860898676879 Q ss_pred -CCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHH Q ss_conf -8899999999998897--578898999999999984 Q gi|254781050|r 265 -KGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLG 298 (300) Q Consensus 265 -~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~ 298 (300) .-+.. ++ -+..|+ ..+++++||...+++.+. T Consensus 490 ~~~df~-~l--A~a~G~~~~~v~~~~el~~al~~a~~ 523 (590) T 1v5e_A 490 TDVDYA-KI--AEAQGAKGFTVSRIEDMDRVMAEAVA 523 (590) T ss_dssp CCCCHH-HH--HHHTTSEEEEECBHHHHHHHHHHHHH T ss_pred CCCCHH-HH--HHHCCCEEEEECCHHHHHHHHHHHHH T ss_conf 999999-99--99779879998999999999999985 No 342 >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Probab=24.54 E-value=31 Score=13.99 Aligned_cols=10 Identities=20% Similarity=-0.041 Sum_probs=5.3 Q ss_pred CHHHHHHHHH Q ss_conf 9899999999 Q gi|254781050|r 285 SPARIGRSLV 294 (300) Q Consensus 285 s~~el~~~l~ 294 (300) .++|+.+..+ T Consensus 368 ~l~~~~eA~~ 377 (398) T 1kol_A 368 SLDDAPRGYG 377 (398) T ss_dssp CGGGHHHHHH T ss_pred EHHHHHHHHH T ss_conf 6999999999 No 343 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=24.52 E-value=31 Score=13.99 Aligned_cols=98 Identities=18% Similarity=0.355 Sum_probs=50.7 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCC--CHHC------- Q ss_conf 8636886212045678899998539958998058846888999999840177189406851013555--1000------- Q gi|254781050|r 70 AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPD--SCKI------- 140 (300) Q Consensus 70 ~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~--~~~l------- 140 (300) ++|+.+++-.++ ..+.+++. ...+|.+...+.|+.--| ...+.+.++.+ .|++|..... +.-+ T Consensus 44 dad~li~~~~~~-i~~~~l~~-~p~LK~I~~~~aG~d~id----~~~~~~~~I~v--~n~~g~~~~~VAE~~l~~iL~~~ 115 (307) T 1wwk_A 44 DVEAIIVRSKPK-VTRRVIES-APKLKVIARAGVGLDNID----VEAAKEKGIEV--VNAPAASSRSVAELAVGLMFSVA 115 (307) T ss_dssp TCSEEEESSCSC-BCHHHHTT-CTTCCEEEESSSCCTTBC----HHHHHHHTCEE--ECCGGGGHHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCC-CCHHHHHC-CCCCEEEEECCCCCCCCC----HHHHHHCCCEE--ECCCCCCHHHHHHHHHHHHHHHH T ss_conf 994999938998-79999942-999879998885267517----89897339467--45898558999999999999998 Q ss_pred ------------CE-EC----CCCCCCCC-EEEEEECCCHHHHHHHHHHHCCCCE Q ss_conf ------------20-01----12357786-7999805414789999999719951 Q gi|254781050|r 141 ------------GI-MP----GSIFRKGS-VGILSRSGTLTYEAVFQTSQEGLGQ 177 (300) Q Consensus 141 ------------gi-~p----~~~~~pG~-VgivSqSG~l~~e~~~~~~~~g~G~ 177 (300) +. .. +.-. .|. +|++. -|.++.+++..+..-|.-+ T Consensus 116 R~~~~~~~~~~~~~~~~~~~~~~~l-~~~~vgIiG-~G~IG~~va~~l~~fg~~v 168 (307) T 1wwk_A 116 RKIAFADRKMREGVWAKKEAMGIEL-EGKTIGIIG-FGRIGYQVAKIANALGMNI 168 (307) T ss_dssp TTHHHHHHHHTTTCCCTTTCCBCCC-TTCEEEEEC-CSHHHHHHHHHHHHTTCEE T ss_pred HCCHHHHHHHHCCCCCCCCCCCEEC-CCCEEEEEC-CCHHHHHHHHHHHHCCCEE T ss_conf 5233678999839865457774404-698999979-2888999999998779989 No 344 >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* Probab=24.38 E-value=32 Score=13.97 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=56.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCE-----EECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 39998888437799999998626981899765899886-----8727745775314078503578863688621204567 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGST-----YWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~-----~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) ||+|.|. |.-|++....+..- |..|..-....+-.. ...|.....++..+-.+.. .++|+-+|+|++.... T Consensus 2 kI~IiGa-GaiG~~~a~~L~~~-G~~V~l~~R~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~D~iii~vKa~~~~ 77 (291) T 1ks9_A 2 KITVLGC-GALGQLWLTALCKQ-GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL--ATSDLLLVTLKAWQVS 77 (291) T ss_dssp EEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHH--HTCSEEEECSCGGGHH T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCEEEEEECCHHHHCEEEEECCCCEECCCEECCCHHHC--CCCCEEEEEECCCCHH T ss_conf 8999995-79999999999978-993799973602321027891699585565213786673--7888899983465377 Q ss_pred HHHHHHHHCC--CCEEEEECCCCCHHH Q ss_conf 8899998539--958998058846888 Q gi|254781050|r 85 DAIIESIEAE--IPLIVCITEGIPVLD 109 (300) Q Consensus 85 dai~Ea~~ag--ik~iviiteGip~~d 109 (300) +++.+....- -..++.+.-|+...+ T Consensus 78 ~~l~~l~~~~~~~t~vv~~qNG~g~~~ 104 (291) T 1ks9_A 78 DAVKSLASTLPVTTPILLIHNGMGTIE 104 (291) T ss_dssp HHHHHHHTTSCTTSCEEEECSSSCTTG T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHH T ss_conf 788875212457846885479866699 No 345 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Probab=24.19 E-value=32 Score=13.95 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=25.7 Q ss_pred CCCEEEEECCHHH---HHHHHHHHHH-CCCCEEEEECCCCC Q ss_conf 8636886212045---6788999985-39958998058846 Q gi|254781050|r 70 AANASVIYVPPSG---AGDAIIESIE-AEIPLIVCITEGIP 106 (300) Q Consensus 70 ~~D~avI~VP~~~---v~dai~Ea~~-agik~iviiteGip 106 (300) .+.-+||.||+.| -..++++|++ ||++.+-++.|..+ T Consensus 134 ~v~~~VItVPa~f~~~QR~a~~~Aa~iAGl~v~~linEptA 174 (605) T 2kho_A 134 PVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 174 (605) T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEEEEHHHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH T ss_conf 87629999899999999999999999769937886155889 No 346 >2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Probab=24.18 E-value=32 Score=13.95 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=32.2 Q ss_pred HHHHHHHHHHCCCCEEEEECC----CCCH------------------HHHHHHHHHHHCCCCEEEEC Q ss_conf 678899998539958998058----8468------------------88999999840177189406 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITE----GIPV------------------LDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 83 v~dai~Ea~~agik~iviite----Gip~------------------~d~~~l~~~A~~~g~riiGP 127 (300) +.+.+.+|.++|++ +|++.| |+|- .....+.++|+++++-|+++ T Consensus 101 i~~lI~~Aa~~Gad-lVvfPEl~itGY~~~~~~~~~~~~~ae~~~~gp~~~~l~~lAk~~~i~Iv~G 166 (405) T 2vhh_A 101 VKTMIKAAAEAGCN-IVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHS 166 (405) T ss_dssp HHHHHHHHHHTTCS-EEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHCCCE-EEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 99999999986991-9986400266998641334447876435279989999999999829889997 No 347 >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} Probab=24.18 E-value=32 Score=13.95 Aligned_cols=72 Identities=7% Similarity=-0.078 Sum_probs=44.3 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH----HHHH-HHHHHH-HCCCCEEEEECCC------CCHHHHHHHHHHHHCCCCE Q ss_conf 75314078503578863688621204----5678-899998-5399589980588------4688899999984017718 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS----GAGD-AIIESI-EAEIPLIVCITEG------IPVLDMVRVKARLEKSSSR 123 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~----~v~d-ai~Ea~-~agik~iviiteG------ip~~d~~~l~~~A~~~g~r 123 (300) -|.|.......+..+ .-++.||-. +-.+ ..++.. ....+.+++.+-+ .+..+..+|.++|+++++. T Consensus 140 ~P~y~~~~~~~~~~g--~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~ivl~~P~NPTG~~~s~e~~~~i~~~a~~~~~~ 217 (437) T 3g0t_A 140 DPGFNLNKLQCRILG--QKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVI 217 (437) T ss_dssp ESCCHHHHHHHHHHT--CCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred CCCCCCHHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEE T ss_conf 897751245788726--754333332234521279999985379945999589989987753126899998875258768 Q ss_pred EEECCC Q ss_conf 940685 Q gi|254781050|r 124 LIGPNC 129 (300) Q Consensus 124 iiGPNc 129 (300) ||==++ T Consensus 218 vi~De~ 223 (437) T 3g0t_A 218 VIEDLA 223 (437) T ss_dssp EEEECT T ss_pred EEECCC T ss_conf 985575 No 348 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Probab=24.14 E-value=32 Score=13.94 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=22.4 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCC Q ss_conf 39998888437799999998626981899765-899 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIH-PKK 44 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~-Pgk 44 (300) |++|-|.+. .|....+..++- |-.|++=+| |.| T Consensus 2 kiv~~~~~~-~~~~~l~~L~~~-~~~i~~V~t~~~~ 35 (305) T 2bln_A 2 KTVVFAYHD-MGCLGIEALLAA-GYEISAIFTHTDN 35 (305) T ss_dssp EEEEEECHH-HHHHHHHHHHHT-TCEEEEEECCCC- T ss_pred EEEEECCCH-HHHHHHHHHHHC-CCCEEEEEECCCC T ss_conf 599992778-999999999978-9988999908999 No 349 >1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase, structural genomics, PSI, protein structure initiative; NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A* Probab=24.08 E-value=32 Score=13.94 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=18.6 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 846888999999840177189406851 Q gi|254781050|r 104 GIPVLDMVRVKARLEKSSSRLIGPNCP 130 (300) Q Consensus 104 Gip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300) |+..+.+..+.+.|++.|.+++ |-|+ T Consensus 51 Gig~~L~~~~~~~Ar~~g~kiv-~~c~ 76 (102) T 1r57_A 51 GVGKKLLKAVVEHARENNLKII-ASCS 76 (102) T ss_dssp CTHHHHHHHHHHHHHHHTCEEE-ESSH T ss_pred HHHHHHHHHHHHHHHHCCCEEE-EECH T ss_conf 4999999999999998799999-9888 No 350 >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Probab=23.90 E-value=32 Score=13.92 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=47.9 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHH-------HHHHHHHHHH-HCCCCEEEEECCC------CCHHHHHHHHHHHHCCC Q ss_conf 75314078503578863688621204-------5678899998-5399589980588------46888999999840177 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPS-------GAGDAIIESI-EAEIPLIVCITEG------IPVLDMVRVKARLEKSS 121 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~-------~v~dai~Ea~-~agik~iviiteG------ip~~d~~~l~~~A~~~g 121 (300) -|.|.+....... ....++.+|.. .-.+...|+. +.+++.+++.+-+ ++..+..+|.++|++++ T Consensus 116 ~P~y~~~~~~~~~--~g~~~v~~~~~~e~~~~~~d~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~l~~l~~~a~~~~ 193 (391) T 3dzz_A 116 EPVYNMFYSVIEG--NGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQ 193 (391) T ss_dssp SSCCHHHHHHHHH--TTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHH--CCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCE T ss_conf 8973778888864--47612420135111456899999999826899669996799997888651999999999998672 Q ss_pred CEEEECCCCE Q ss_conf 1894068510 Q gi|254781050|r 122 SRLIGPNCPG 131 (300) Q Consensus 122 ~riiGPNc~G 131 (300) +.||==.+-+ T Consensus 194 ~~ii~De~Y~ 203 (391) T 3dzz_A 194 VLLISDEIHG 203 (391) T ss_dssp CEEEEECTTT T ss_pred EEEEEECCCC T ss_conf 7999934754 No 351 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=23.76 E-value=33 Score=13.90 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=48.2 Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH--HHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHH Q ss_conf 997658998868727745775314078503578863688621204--567889999853995899805-88468889999 Q gi|254781050|r 37 VGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS--GAGDAIIESIEAEIPLIVCIT-EGIPVLDMVRV 113 (300) Q Consensus 37 vagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~--~v~dai~Ea~~agik~iviit-eGip~~d~~~l 113 (300) |..++|+.....|. .-+.+.+.++.++.++++.+..-... .-...+.++++.+.+.++++. ..- ....++ T Consensus 6 Vvf~~P~~~~~pf~-----~~v~~g~~~aA~~~G~~l~v~~~~~d~~~q~~~i~~~i~~~~~~~~i~~~~~~--~~~~~i 78 (350) T 3h75_A 6 VVFLNPGNSTETFW-----VSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ--YVAPQI 78 (350) T ss_dssp EEEEECSCTTCHHH-----HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS--SHHHHH T ss_pred EEEECCCCCCCHHH-----HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC--CCCHHH T ss_conf 99975898889899-----99999999999973998999958999999999999999569986999967832--036999 Q ss_pred HHHHHCCCCEEEECCC Q ss_conf 9984017718940685 Q gi|254781050|r 114 KARLEKSSSRLIGPNC 129 (300) Q Consensus 114 ~~~A~~~g~riiGPNc 129 (300) .+.+++.|+.++-=|. T Consensus 79 l~~a~~~gIpvv~vd~ 94 (350) T 3h75_A 79 LRLSQGSGIKLFIVNS 94 (350) T ss_dssp HHHHTTSCCEEEEEES T ss_pred HHHHHHCCCEEEEECC T ss_conf 9999986994999468 No 352 >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789} Probab=23.65 E-value=33 Score=13.88 Aligned_cols=37 Identities=0% Similarity=-0.051 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 678899998539958998058846888999999840177 Q gi|254781050|r 83 AGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSS 121 (300) Q Consensus 83 v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g 121 (300) ..+++..|.++||..++++.-. ..|..+..++|+++. T Consensus 40 l~~Vl~rA~~~GV~~ii~~g~~--~~~~~~a~~La~~~~ 76 (401) T 3e2v_A 40 YVKLLERAAQRHVKNALVTGSS--IAESQSAIELVSSVK 76 (401) T ss_dssp HHHHHHHHHHTTEEEEEECCCS--HHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHCCCCEEEEECCC--HHHHHHHHHHHHHCC T ss_conf 9999999998799989991599--999999999999662 No 353 >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Probab=23.64 E-value=33 Score=13.88 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=55.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-------CCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHH Q ss_conf 7399988884377999999986269818997658-------998868727745775314078503578863688621204 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHP-------KKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPS 81 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~P-------gkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~ 81 (300) -|++|-|. |.-|++..-.. .. +.+|+.-+.. .+.|-.+.+.....++..+. +.....++|+.+|+|.+. T Consensus 3 MkI~IiGa-GaiG~~~a~~L-~~-~~~V~l~~r~~~~~~~i~~~Gl~~~~~~~~~~~~~~~-~~~~~~~~D~viv~vK~~ 78 (307) T 3ego_A 3 LKIGIIGG-GSVGLLCAYYL-SL-YHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSA-DTSINSDFDLLVVTVKQH 78 (307) T ss_dssp CEEEEECC-SHHHHHHHHHH-HT-TSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEE-ESSCCSCCSEEEECCCGG T ss_pred CEEEEECC-CHHHHHHHHHH-HC-CCCEEEEECCHHHHHHHHHCCEEEEECCEEEEEECCC-CHHHCCCCCEEEEECCHH T ss_conf 88999996-59999999999-77-2987999888899999997790993099589851567-710058863899924666 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 5678899998539958998058846888 Q gi|254781050|r 82 GAGDAIIESIEAEIPLIVCITEGIPVLD 109 (300) Q Consensus 82 ~v~dai~Ea~~agik~iviiteGip~~d 109 (300) ...+++.+....+=..++.+.-|+...+ T Consensus 79 ~l~~~~~~l~~~~~t~iv~lqNG~g~~e 106 (307) T 3ego_A 79 QLQSVFSSLERIGKTNILFLQNGMGHIH 106 (307) T ss_dssp GHHHHHHHTTSSCCCEEEECCSSSHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHH T ss_conf 3999999722047754898335743789 No 354 >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Probab=23.49 E-value=33 Score=13.87 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=44.4 Q ss_pred CCCCEEEEECCHH--HHHHHHHHHHH-CCCCEEEEEC----CCCCHHHHHHHHHHHHCCCCEEE--ECCCCEEECCC--C Q ss_conf 8863688621204--56788999985-3995899805----88468889999998401771894--06851013555--1 Q gi|254781050|r 69 TAANASVIYVPPS--GAGDAIIESIE-AEIPLIVCIT----EGIPVLDMVRVKARLEKSSSRLI--GPNCPGILTPD--S 137 (300) Q Consensus 69 ~~~D~avI~VP~~--~v~dai~Ea~~-agik~iviit----eGip~~d~~~l~~~A~~~g~rii--GPNc~Gii~p~--~ 137 (300) .+...-++..+.. ...+.+.+... ...+.+++.- .|. ..+..++.++|+++|..++ +=-++|....+ . T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tg~-~~~i~~i~~~~k~~ga~~vvDavs~~g~~~id~~~ 193 (396) T 2ch1_A 115 YGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGL-LQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDK 193 (396) T ss_dssp TTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTE-ECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTT T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC-CCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEHHH T ss_conf 65124333455678889899997751268629999977605754-57489999999862981899711244103433344 Q ss_pred HHCCEEC--C-C-CCCCCCEEEEEECCCH Q ss_conf 0002001--1-2-3577867999805414 Q gi|254781050|r 138 CKIGIMP--G-S-IFRKGSVGILSRSGTL 162 (300) Q Consensus 138 ~~lgi~p--~-~-~~~pG~VgivSqSG~l 162 (300) ..+-++- + + +..|+.++++..|-.+ T Consensus 194 ~~iD~~~~s~~K~l~gp~G~g~~~~~~~~ 222 (396) T 2ch1_A 194 WEIDAVYTGAQKVLGAPPGITPISISPKA 222 (396) T ss_dssp TTCCEEECCCC-CCCCCSSCEEEEECHHH T ss_pred CCCCEEEECCCCCCCCCCEEEEEECCHHH T ss_conf 17738984365566899879987457889 No 355 >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Probab=23.47 E-value=33 Score=13.86 Aligned_cols=66 Identities=8% Similarity=0.024 Sum_probs=41.8 Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH Q ss_conf 27745775314078503578863688621204567889999853995899805884688899999984 Q gi|254781050|r 50 TGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARL 117 (300) Q Consensus 50 ~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A 117 (300) .++..++|+|+.+....+. +.+......+....+.+.++.+.|.+.+-+-.-.-+..|..++.++- T Consensus 128 ~gK~~~~Pv~~llGg~~~~--i~vya~~~~~~~~~e~~~~~~~~Gf~~~K~k~g~~~~~D~~~v~~~r 193 (392) T 3ddm_A 128 AARRAGQPLWAWLGGSGDR--IGVYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALHVR 193 (392) T ss_dssp HHHHTTCBHHHHTTCSCCE--EEEEEEEECSSSHHHHHHHHHHHTCCCEEEECSSCHHHHHHHHHHHH T ss_pred HHCCCCCCHHHHCCCCCCC--EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 7551498766615875321--13320457887799999999983887002443455378899999998 No 356 >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Probab=23.37 E-value=25 Score=14.64 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.1 Q ss_pred CCCEEEEEEE Q ss_conf 5526899843 Q gi|254781050|r 236 KKPIVGFVAG 245 (300) Q Consensus 236 ~KPVva~~~G 245 (300) .|.-+-|+.- T Consensus 325 ~kv~I~wIds 334 (535) T 3nva_A 325 VRPKLIWIES 334 (535) T ss_dssp CEEEEEEEEG T ss_pred CEEEEEEEEC T ss_conf 3236999840 No 357 >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.48A {Mesorhizobium loti MAFF303099} Probab=23.29 E-value=33 Score=13.84 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=41.9 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHCCCCEEEEC Q ss_conf 774577531407850357886368862--1204567889999853995899805884-6888999999840177189406 Q gi|254781050|r 51 GGNVNVPVFTTVAEAKERTAANASVIY--VPPSGAGDAIIESIEAEIPLIVCITEGI-PVLDMVRVKARLEKSSSRLIGP 127 (300) Q Consensus 51 g~~~~iPvy~sv~ea~~~~~~D~avI~--VP~~~v~dai~Ea~~agik~iviiteGi-p~~d~~~l~~~A~~~g~riiGP 127 (300) |+..++|+|.-+....++..+-.+.+. .++....+.+.++.+.|.+.+-+---.- ++.|..++.++ |+. +|| T Consensus 115 gK~~~~Pv~~LlGg~~~~i~~yas~~~~~~~~~~~~~~~~~~~~~Gf~~~Kik~G~~d~~~di~~v~~i-r~~----~g~ 189 (389) T 2oz8_A 115 AKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELL-KTC----VPA 189 (389) T ss_dssp HHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHH-HTT----SCT T ss_pred HHHCCCCHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH-HHH----HCC T ss_conf 877299747746986541567762367789999999999999867997784266778778899999999-987----456 Q ss_pred CCCEEECC Q ss_conf 85101355 Q gi|254781050|r 128 NCPGILTP 135 (300) Q Consensus 128 Nc~Gii~p 135 (300) ++.=.+.+ T Consensus 190 ~~~l~vDa 197 (389) T 2oz8_A 190 GSKVMIDP 197 (389) T ss_dssp TCEEEEEC T ss_pred CCEEEECC T ss_conf 85698525 No 358 >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate biosynthesis, PSI-2; 1.90A {Methylococcus capsulatus} Probab=23.22 E-value=33 Score=13.83 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=78.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CCEEEC----CCCCC--CCCCCCHHHHCCCCCCCEEEEE Q ss_conf 39998888437799999998626981899765899------886872----77457--7531407850357886368862 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK------GSTYWT----GGNVN--VPVFTTVAEAKERTAANASVIY 77 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk------gg~~~~----g~~~~--iPvy~sv~ea~~~~~~D~avI~ 77 (300) ||+|.|. |.-|++.+....+- |.+|. .+.-+. .|-++. ++... ..++++..++.. ..|+-+++ T Consensus 4 kI~IiGa-GaiG~~~a~~L~~a-G~~Vt-lv~R~~~~ai~~~Gl~i~~~~~g~~~~~~~~~~~~~~~~~~--~~D~viv~ 78 (320) T 3i83_A 4 NILVIGT-GAIGSFYGALLAKT-GHCVS-VVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET--KPDCTLLC 78 (320) T ss_dssp EEEEESC-CHHHHHHHHHHHHT-TCEEE-EECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS--CCSEEEEC T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHCCCEEECCCCCCEEEECCEEECCHHHHCC--CCCEEEEE T ss_conf 8999996-89999999999848-99179-99795799999779899806888469932146678678366--88879997 Q ss_pred CCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEE--CCCCHHCCEECCCCCCCCCE Q ss_conf 12045678899998539--958998058846888999999840177189406851013--55510002001123577867 Q gi|254781050|r 78 VPPSGAGDAIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGIL--TPDSCKIGIMPGSIFRKGSV 153 (300) Q Consensus 78 VP~~~v~dai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii--~p~~~~lgi~p~~~~~pG~V 153 (300) |+.....+++......- -..++++.-|+...+ ++.+...+. ..+-|....+.. .|+..+. ..+|.+ T Consensus 79 vK~~~~~~~~~~l~~~~~~~t~vv~lqNG~~~~~--~l~~~~~~~-~vi~g~~~~~~~~~~pg~~~~-------~~~~~~ 148 (320) T 3i83_A 79 IKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEP--EVAAAFPDN-EVISGLAFIGVTRTAPGEIWH-------QAYGRL 148 (320) T ss_dssp CCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSH--HHHHHSTTS-CEEEEEEEEEEEEEETTEEEE-------EEEEEE T ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH--HHHHHCCCC-CCCCCEEEEEEEEECCEEEEE-------CCCCCE T ss_conf 3144568899874322047837998246552699--999865823-133540565037854879997-------378834 Q ss_pred EEEEECCCH---HHHHHHHHHHCCCCEE Q ss_conf 999805414---7899999997199516 Q gi|254781050|r 154 GILSRSGTL---TYEAVFQTSQEGLGQS 178 (300) Q Consensus 154 givSqSG~l---~~e~~~~~~~~g~G~S 178 (300) -+-...+.. ..++...+...++-.. T Consensus 149 ~~g~~~~~~~~~~~~l~~~l~~~~~~~~ 176 (320) T 3i83_A 149 MLGNYPGGVSERVKTLAAAFEEAGIDGI 176 (320) T ss_dssp EEEESSSCCCHHHHHHHHHHHHTTSCEE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEE T ss_conf 7742599855789999999860688446 No 359 >2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Probab=23.09 E-value=34 Score=13.82 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=57.4 Q ss_pred CCCCCEEEEEECCCHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH Q ss_conf 577867999805414789----9999997199516764055674467899999999973998728899970587248999 Q gi|254781050|r 148 FRKGSVGILSRSGTLTYE----AVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEA 223 (300) Q Consensus 148 ~~pG~VgivSqSG~l~~e----~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~a 223 (300) |.==.|++|......+.. +...+.+.|+-+.....+..+... .++.+.+.-...+...++|++++. +.++ T Consensus 184 f~W~~V~ii~~~d~~g~~~~~~l~~~~~~~gi~i~~~~~i~~~~~~-~~~~~~~~~~i~~~~a~vIvl~~~-----~~~~ 257 (555) T 2e4u_A 184 FNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIR-KSYDSVIRELLQKPNARVVVLFMR-----SDDS 257 (555) T ss_dssp TTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCH-HHHHHHHHHHHTCTTCCEEEEECC-----HHHH T ss_pred HCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCH-HHHHHHHHHHHHHCCCEEEEEEEC-----HHHH T ss_conf 5986999998337447799999999999769859999981688636-778889999987527508999815-----1899 Q ss_pred HHHHHHHHHCCCCCCEEEE Q ss_conf 9999986422675526899 Q gi|254781050|r 224 AQFLKDEAKRGRKKPIVGF 242 (300) Q Consensus 224 a~fi~~~~~~~~~KPVva~ 242 (300) ..++.++.+...+++.+++ T Consensus 258 ~~ll~~a~~~~~~~~~~~~ 276 (555) T 2e4u_A 258 RELIAAANRVNASFTWVAS 276 (555) T ss_dssp HHHHHHHHHTTCCCEEEEC T ss_pred HHHHHHHHHCCCCCCEEEE T ss_conf 9999999980995316996 No 360 >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Probab=23.01 E-value=18 Score=15.47 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=37.1 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC----CCCEE-EEECCCCCCCHHHHHHHHHHC--CC Q ss_conf 889997058724899999999864226755268998430157655----32200-112248888999999999988--97 Q gi|254781050|r 208 SIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGR----TMGHA-GAVISGGKGGAEDKINAMKEA--GI 280 (300) Q Consensus 208 ~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~----~~gHa-GAi~~~~~g~a~~k~~al~~a--Gv 280 (300) -|++.||.| +--+-.|++|-.... ++.|-|..-++.- |... =|||. ||..+.. ..+.-.|++| |- T Consensus 154 ~VLi~GEsG-tGKe~~Ar~iH~~S~--r~~pfv~vnc~a~-~~~l~eseLFG~ekgaftga~----~~~~G~~e~A~~GT 225 (368) T 3dzd_A 154 PVLITGESG-TGKEIVARLIHRYSG--RKGAFVDLNCASI-PQELAESELFGHEKGAFTGAL----TRKKGKLELADQGT 225 (368) T ss_dssp CEEEECCTT-SSHHHHHHHHHHHHC--CCSCEEEEESSSS-CTTTHHHHHHEECSCSSSSCC----CCEECHHHHTTTSE T ss_pred CEEEECCCC-CCHHHHHHHHHHHCC--CCCCCEEEECCCC-CHHHHHHHHHCCCCCCCCCCC----CCCCCHHHHCCCCE T ss_conf 589988998-588999999997178--8899827756889-977889987076557767620----11377567237980 Q ss_pred EECCCHHHHHHHHHH Q ss_conf 578898999999999 Q gi|254781050|r 281 CIAPSPARIGRSLVE 295 (300) Q Consensus 281 ~v~~s~~el~~~l~~ 295 (300) ..-|.+.+|+..+.. T Consensus 226 LfLdei~~l~~~~Q~ 240 (368) T 3dzd_A 226 LFLDEVGELDQRVQA 240 (368) T ss_dssp EEEETGGGSCHHHHH T ss_pred EEECCHHHCCHHHHH T ss_conf 882541228999999 No 361 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=22.98 E-value=34 Score=13.80 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=49.0 Q ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH--HHHHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 6981899765899886872774577531407850357886368862120--45678899998539958998058846888 Q gi|254781050|r 32 CQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP--SGAGDAIIESIEAEIPLIVCITEGIPVLD 109 (300) Q Consensus 32 ~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~--~~v~dai~Ea~~agik~iviiteGip~~d 109 (300) ..+++++-+-|.-...++ .-+++.+.++.++.+.++-+....- ..-.+.+..+++.++..+++.+-.-. . T Consensus 6 ~k~~~Igvi~~~~~~~f~------~~~~~~i~~~a~~~Gy~~~~~~~~~~~~~~~~~i~~li~~~~DgIii~~~~~~--~ 77 (293) T 3l6u_A 6 PKRNIVGFTIVNDKHEFA------QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV--Y 77 (293) T ss_dssp ---CEEEEEESCSCSHHH------HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT--T T ss_pred CCCCEEEEEEECCCCHHH------HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--C T ss_conf 999999999968999899------99999999999986998999979999899999999999769999999433220--1 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 99999984017718940 Q gi|254781050|r 110 MVRVKARLEKSSSRLIG 126 (300) Q Consensus 110 ~~~l~~~A~~~g~riiG 126 (300) ....++.+++.|+-++- T Consensus 78 ~~~~l~~~~~~giPVV~ 94 (293) T 3l6u_A 78 IGSAIEEAKKAGIPVFA 94 (293) T ss_dssp THHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHCCCCEEE T ss_conf 38999999986997997 No 362 >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, alternative splicing, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Probab=22.84 E-value=34 Score=13.79 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=5.7 Q ss_pred CHHHHHHHHHHH Q ss_conf 989999999999 Q gi|254781050|r 285 SPARIGRSLVEL 296 (300) Q Consensus 285 s~~el~~~l~~~ 296 (300) .++|+.+.++.+ T Consensus 328 ~l~~~~~A~~~l 339 (354) T 2j8z_A 328 PVTEIQEAHKYM 339 (354) T ss_dssp EGGGHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 399999999999 No 363 >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein structure initiative; 2.66A {Mycobacterium tuberculosis CDC1551} SCOP: c.2.1.1 Probab=22.83 E-value=34 Score=13.78 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=55.7 Q ss_pred EECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH Q ss_conf 71797399988884377999999986269818997658998868727745775314078503578863688621204567 Q gi|254781050|r 5 VDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300) Q Consensus 5 ~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300) +.++.+|+|.|-+|.-|......+..+ |.++++-+... ..++.+ ++.++|..+..-...+ . T Consensus 36 ~~~g~~VlV~ga~g~vG~~~iq~a~~~-g~~vi~~~~~~----------------~~~~~~-k~~Ga~~vi~~~~~~~-~ 96 (198) T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSD----------------AKREML-SRLGVEYVGDSRSVDF-A 96 (198) T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSH----------------HHHHHH-HTTCCSEEEETTCSTH-H T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCH----------------HHHHHH-CCCCCEEEEECCCCCH-H T ss_conf 999985899857566869999988744-96489862657----------------999874-0568708998999789-9 Q ss_pred HHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 8899998-539958998058846888999999840177189 Q gi|254781050|r 85 DAIIESI-EAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 85 dai~Ea~-~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) +.+++.. ..|+..++ -+-|- ....+..+..+..|..+ T Consensus 97 ~~i~~~t~~~g~D~v~-d~vg~--~~~~~~~~~l~~~G~~v 134 (198) T 1pqw_A 97 DEILELTDGYGVDVVL-NSLAG--EAIQRGVQILAPGGRFI 134 (198) T ss_dssp HHHHHHTTTCCEEEEE-ECCCT--HHHHHHHHTEEEEEEEE T ss_pred HHHHHHHCCCCEEEEE-ECCCH--HHHHHHHHHHCCCCEEE T ss_conf 9999984898727998-35768--99999999866997899 No 364 >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ... Probab=22.58 E-value=34 Score=13.75 Aligned_cols=74 Identities=12% Similarity=-0.087 Sum_probs=40.1 Q ss_pred CCCCCCHHHHCCCCCCCEEEEECCHHHH------HHHHHHHHH---CCCCEEEEECCC------CCHHHHHHHHHHHHCC Q ss_conf 7531407850357886368862120456------788999985---399589980588------4688899999984017 Q gi|254781050|r 56 VPVFTTVAEAKERTAANASVIYVPPSGA------GDAIIESIE---AEIPLIVCITEG------IPVLDMVRVKARLEKS 120 (300) Q Consensus 56 iPvy~sv~ea~~~~~~D~avI~VP~~~v------~dai~Ea~~---agik~iviiteG------ip~~d~~~l~~~A~~~ 120 (300) -|.|.+-....+. ....++.+|-..- .+...+..+ ...+.+++.+-+ .+..+.++|.++|+++ T Consensus 127 ~P~y~~y~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~P~NPTG~v~s~e~l~~l~~~a~~~ 204 (396) T 2q7w_A 127 NPSWPNHKSVFNS--AGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK 204 (396) T ss_dssp ESCCTHHHHHHHH--TTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHH--CCCEEEEEECCHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 8898648999998--69989996153242346799999999842787848999689988878687999999999998636 Q ss_pred CCEEEECCCCE Q ss_conf 71894068510 Q gi|254781050|r 121 SSRLIGPNCPG 131 (300) Q Consensus 121 g~riiGPNc~G 131 (300) ++.||==.+-. T Consensus 205 ~~~ii~De~Y~ 215 (396) T 2q7w_A 205 GWLPLFDFAYQ 215 (396) T ss_dssp TCEEEEEESCT T ss_pred CCEEEEEECCC T ss_conf 74399881541 No 365 >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Probab=22.43 E-value=35 Score=13.73 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=18.8 Q ss_pred HHHHHHHHHCCCCCCEEEEEEE Q ss_conf 9999999973998728899970 Q gi|254781050|r 193 FIDVLELFLADEATESIVMVGE 214 (300) Q Consensus 193 ~~d~L~~~~~Dp~T~~Ivl~gE 214 (300) +.+.++.+..||+.++||+-|. T Consensus 199 L~~al~~~~~D~~VrvVVLtGa 220 (440) T 2np9_A 199 METAVDLALLDPGVRVGLLRGG 220 (440) T ss_dssp HHHHHHHHHHCTTCSEEEEEEC T ss_pred HHHHHHHHHHCCCCEEEEEECC T ss_conf 9999999962999649999688 No 366 >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Probab=22.26 E-value=35 Score=13.71 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=50.1 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC----------CCCCCCCEEE Q ss_conf 678999999999739987288999705872489999999986422675526899843015----------7655322001 Q gi|254781050|r 189 KGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTA----------PPGRTMGHAG 258 (300) Q Consensus 189 ~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtA----------p~g~~~gHaG 258 (300) +|..+.-.+-.-...|+.++|++.|. |..-....++.-+. ..+-|++.++---.. ..+.+..++ T Consensus 515 mG~~lpaAiGaalA~p~~~Vv~i~GD--GsF~~~~~eL~Ta~---r~~lpi~ivV~NN~g~gi~~~~q~~~~~~~~~~~- 588 (677) T 1t9b_A 515 MGYGLPAAIGAQVAKPESLVIDIDGD--ASFNMTLTELSSAV---QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHT- 588 (677) T ss_dssp TTCHHHHHHHHHHHCTTSEEEEEEEH--HHHHHHGGGHHHHH---HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSC- T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECH--HHHHHHHHHHHHHH---HHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCC- T ss_conf 11156689999985899859999885--88735299999999---9786929999969997488899987528886667- Q ss_pred EECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHHC Q ss_conf 1224888899999999998897--5788989999999999843 Q gi|254781050|r 259 AVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLGS 299 (300) Q Consensus 259 Ai~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~~ 299 (300) -. ..-+.. +.-+..|+ ..+++++||.+.|++.++. T Consensus 589 -~~--~~~df~---~lA~a~G~~~~~V~~~~eL~~al~~al~~ 625 (677) T 1t9b_A 589 -HQ--LNPDFI---KLAEAMGLKGLRVKKQEELDAKLKEFVST 625 (677) T ss_dssp -CC--CCCCHH---HHHHHTTCEEEEECSHHHHHHHHHHHHHC T ss_pred -CC--CCCCHH---HHHHHCCCEEEEECCHHHHHHHHHHHHHC T ss_conf -79--998999---99997798699969999999999999858 No 367 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Probab=21.84 E-value=35 Score=13.66 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=88.5 Q ss_pred CCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHH---- Q ss_conf 9818997658998868727745775314078503578863688621204567889999853995899805884688---- Q gi|254781050|r 33 QTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVL---- 108 (300) Q Consensus 33 gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~---- 108 (300) +..|.-.++|+--. +.+. -..+..++.+.+...+.+++-.=-. .-.|.+.+|+++|...+++=.+..|.. T Consensus 42 ~sPvIlq~~~~~~~--~~~~---~~~~~~~~~~a~~~~VPV~lHlDH~-~~~e~i~~ai~~GftSVMiD~S~l~~eeNi~ 115 (286) T 1gvf_A 42 RSPVILAGTPGTFK--HIAL---EEIYALCSAYSTTYNMPLALHLDHH-ESLDDIRRKVHAGVRSAMIDGSHFPFAENVK 115 (286) T ss_dssp TCCCEEEECTTHHH--HSCH---HHHHHHHHHHHHHTTSCBEEEEEEE-CCHHHHHHHHHTTCCEEEECCTTSCHHHHHH T ss_pred CCCEEEECCHHHHH--HCCH---HHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCEEEEECCCCCHHHHHH T ss_conf 99989986777885--6789---9999999999873699889876536-8878999986168864876489899999999 Q ss_pred HHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECCCHH--HHHHHHHHHCCCCEEEEEECCC- Q ss_conf 8999999840177189406851013555100020011235778679998054147--8999999971995167640556- Q gi|254781050|r 109 DMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLT--YEAVFQTSQEGLGQSTAVGIGG- 185 (300) Q Consensus 109 d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG~l~--~e~~~~~~~~g~G~S~~VsiG~- 185 (300) ..++++++|+..|+.+=+ -+|.+++. .+.+.....+..+| .++.....+.|+- +..|++|| T Consensus 116 ~Tk~vv~~ah~~gv~VEa------------ElG~igg~---ed~~~~~~~~~~~T~Peea~~Fv~~TgvD-~LAvaiGt~ 179 (286) T 1gvf_A 116 LVKSVVDFCHSQDCSVEA------------ELGRLGGV---EDDMSVDAESAFLTDPQEAKRFVELTGVD-SLAVAIGTA 179 (286) T ss_dssp HHHHHHHHHHHTTCEEEE------------EESCCC--------------CCSSCCHHHHHHHHHHHCCS-EEEECSSCC T ss_pred HHHHHHHHHHHHCCEEEE------------EECCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHCCC-EEHHHHCCC T ss_conf 999999999864242676------------44135677---77766554213589999999999987888-231552665 Q ss_pred -CCC---CCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH Q ss_conf -744---6789999999997399872889997058724899999999 Q gi|254781050|r 186 -DPV---KGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLK 228 (300) Q Consensus 186 -D~~---~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~ 228 (300) -.+ +.++| |.|+...+--++ -+||.|=- |..+++..+.++ T Consensus 180 HG~y~~~p~L~~-~~l~~I~~~~~v-PLVLHGgS-G~p~e~i~~ai~ 223 (286) T 1gvf_A 180 HGLYSKTPKIDF-QRLAEIREVVDV-PLVLHGAS-DVPDEFVRRTIE 223 (286) T ss_dssp SSCCSSCCCCCH-HHHHHHHHHCCS-CEEECCCT-TCCHHHHHHHHH T ss_pred CCCCCCCCCCCC-HHHHHHHHCCCC-CEEEECCC-CCCHHHHHHHHH T ss_conf 666589985430-356676524699-86745899-997689999997 No 368 >3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Probab=21.70 E-value=36 Score=13.64 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=92.6 Q ss_pred CCEEEEECCHH---HHHHHHHHHHHCCCCEEEEECCCC---------CHHHHHHHHHHHHCC--CCEEEECCCCEEECCC Q ss_conf 63688621204---567889999853995899805884---------688899999984017--7189406851013555 Q gi|254781050|r 71 ANASVIYVPPS---GAGDAIIESIEAEIPLIVCITEGI---------PVLDMVRVKARLEKS--SSRLIGPNCPGILTPD 136 (300) Q Consensus 71 ~D~avI~VP~~---~v~dai~Ea~~agik~iviiteGi---------p~~d~~~l~~~A~~~--g~riiGPNc~Gii~p~ 136 (300) ..+.+.+|+.. ...+++.+++...-+..++.++.- ...|..++.++++++ ++.++.=||.|-..-. T Consensus 148 ~GI~~~~vd~~d~~~d~~~i~~ai~~~~k~~~v~~~~s~~~~~~p~l~i~dI~~i~~~ak~~~~~v~v~VDNt~~~p~~~ 227 (427) T 3hvy_A 148 YGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE 227 (427) T ss_dssp GTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH T ss_conf 68589844888726559999863166784699993378776777710189999999999974789889834754454440 Q ss_pred --CHHCCE--ECCCC--CCCCC----EEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCC-----------CCC--CCH Q ss_conf --100020--01123--57786----79998054147899999997199516764055674-----------467--899 Q gi|254781050|r 137 --SCKIGI--MPGSI--FRKGS----VGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDP-----------VKG--TEF 193 (300) Q Consensus 137 --~~~lgi--~p~~~--~~pG~----VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~-----------~~G--~~~ 193 (300) -..+|. +-... +--|. -|+|.-+-.|.-.+..+++..|+|.+-.-+.+.-. ... +.. T Consensus 228 ~ePl~~GADiV~~SltK~lgGh~d~~GG~IvG~kelie~~~~rl~~~G~~~~~g~~~~~lRgl~tl~~r~~~~~~nAlk~ 307 (427) T 3hvy_A 228 KEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307 (427) T ss_dssp SCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHCCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 47411088689997440478987764799973899999999972399878895148999889988898899999999999 Q ss_pred HHHHHH-HH----------CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 999999-97----------39987288999705872489999999986422675526899 Q gi|254781050|r 194 IDVLEL-FL----------ADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGF 242 (300) Q Consensus 194 ~d~L~~-~~----------~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~ 242 (300) ++++.. |+ +||.|+.|.-+ + -|+.| ....|.+.-.+ ..||=+| T Consensus 308 A~f~A~~~e~~g~~~~P~~~~~r~diiq~~-~-~~~~~-~~~~f~~~~q~---~~pvd~~ 361 (427) T 3hvy_A 308 AVFCARIMELAGFDVLPKYNDKRTDIIQAI-K-FNDEK-KLIDFIKGIQT---ASPVDSF 361 (427) T ss_dssp HHHHHHHHHHTTCEEESCTTSCCSSSEEEE-E-CSSHH-HHHHHHHHHHH---TCSSSTT T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEE-E-CCCHH-HHHHHHHHHHC---CCCCCCC T ss_conf 999999999859955899999864169987-5-69989-99999999852---6985646 No 369 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Probab=21.66 E-value=36 Score=13.63 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=28.5 Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCHHHHHHHHHCCCCC--CEEEEEEECC Q ss_conf 414789999999719951676405567446-78999999999739987--2889997058 Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGGDPVK-GTEFIDVLELFLADEAT--ESIVMVGEIG 216 (300) Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~-G~~~~d~L~~~~~Dp~T--~~Ivl~gEiG 216 (300) +|.+.|++....-. |-+-.+. |.-- =....+.++++.+=|-+ +.++|-|+|| T Consensus 581 tT~ahQLAl~Vv~~----SplQ~~a-D~P~~y~~~p~~~~Fi~~vPt~WDET~~L~G~~G 635 (738) T 2d73_A 581 STIARQLALYVTMY----SPLQMAA-DIPENYERFMDAFQFIKDVALDWDETNYLEAEPG 635 (738) T ss_dssp SCHHHHHHHHHHSC----CSEEECC-SCHHHHTTSHHHHHHHHHCCSSEEEEEEEEEETT T ss_pred CCHHHHHHHHHHHH----HHHHHHH-CCHHHHHCCCHHHHHHHHCCCCCCCCEEECCCCC T ss_conf 62899999999986----6888853-3987765086788999729998533546467463 No 370 >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* Probab=21.66 E-value=36 Score=13.63 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=82.7 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 77457753140785035788636886212045678899998539958998058846888999999840177189406851 Q gi|254781050|r 51 GGNVNVPVFTTVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCP 130 (300) Q Consensus 51 g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~ 130 (300) ++..++|+|..+....+...++.+.....+....+...+..+.|.+.+=+=--.-...|..++.++.+. +||++. T Consensus 111 ~k~~~~pl~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~KiKvg~~~~~di~~i~~ir~~-----~g~~~~ 185 (354) T 3jva_A 111 GQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREA-----VGFDIK 185 (354) T ss_dssp HHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHH-----HCTTSE T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH-----HCCCCE T ss_conf 534554336650787775025664023552788899999997279879997799979999999999997-----099988 Q ss_pred EEECCCCHHC---CEECCCCCCCCCEEEEEECCC-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC Q ss_conf 0135551000---200112357786799980541-478999999971995167640556744678999999999739987 Q gi|254781050|r 131 GILTPDSCKI---GIMPGSIFRKGSVGILSRSGT-LTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEAT 206 (300) Q Consensus 131 Gii~p~~~~l---gi~p~~~~~pG~VgivSqSG~-l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T 206 (300) =.+.++..+- .+.......+-++-.+-|=-. --.+....+++. .+ .-+..| +.+ .+..|+.+++++ ... T Consensus 186 l~~Dan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~~~l~~~-~~--ipia~~-E~~--~~~~~~~~~i~~-~a~ 258 (354) T 3jva_A 186 LRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQ-VN--TTIMAD-ESC--FDAQDALELVKK-GTV 258 (354) T ss_dssp EEEECTTCSCHHHHHHHHHHTTTSCEEEEECCSCTTCHHHHHHHHHH-CS--SEEEES-TTC--CSHHHHHHHHHH-TCC T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCC-CC--CCCCCC-CCE--ECCHHHHHHHHC-CCC T ss_conf 99978765255789987442233443312689884486675322034-24--643178-622--200017999976-987 Q ss_pred CEEEEEE-ECCCHHHH Q ss_conf 2889997-05872489 Q gi|254781050|r 207 ESIVMVG-EIGGSAEE 221 (300) Q Consensus 207 ~~Ivl~g-EiGG~~E~ 221 (300) +.+.+=. -+||..+- T Consensus 259 d~v~~d~~~~GGi~~~ 274 (354) T 3jva_A 259 DVINIKLMKCGGIHEA 274 (354) T ss_dssp SEEEECHHHHTSHHHH T ss_pred CEEEECCCCCCCHHHH T ss_conf 9898678545899999 No 371 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=21.56 E-value=36 Score=13.62 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=86.9 Q ss_pred CCCCEEEEECCCCCCEEECCCCCCCCCC----CCHHHHCCCCCCCEEEEECC-----HHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 6981899765899886872774577531----40785035788636886212-----04567889999853995899805 Q gi|254781050|r 32 CQTQVVGGIHPKKGSTYWTGGNVNVPVF----TTVAEAKERTAANASVIYVP-----PSGAGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 32 ~gt~ivagV~Pgkgg~~~~g~~~~iPvy----~sv~ea~~~~~~D~avI~VP-----~~~v~dai~Ea~~agik~iviit 102 (300) ..|++++=|-|.=. -|.| +.+.++.++.+.++.+...+ .....+++......++..+++.+ T Consensus 6 ~~~~~Igviip~~~----------~~~~~~~~~gi~~~~~~~g~~~~i~~~~~~~~~~e~~~~~i~~l~~~~vdgiIi~~ 75 (290) T 2rgy_A 6 QQLGIIGLFVPTFF----------GSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVIS 75 (290) T ss_dssp --CCEEEEECSCSC----------SHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECC T ss_pred CCCCEEEEECCCCC----------CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99998999938987----------88999999999999998699899996889863099999999999848998899965 Q ss_pred CCCCHHHHHHHHHHHHCCC--CEEEECCCCEE----ECCCCHHCCEECC-CCCCCC--CEEEEEECCCHHH--H----HH Q ss_conf 8846888999999840177--18940685101----3555100020011-235778--6799980541478--9----99 Q gi|254781050|r 103 EGIPVLDMVRVKARLEKSS--SRLIGPNCPGI----LTPDSCKIGIMPG-SIFRKG--SVGILSRSGTLTY--E----AV 167 (300) Q Consensus 103 eGip~~d~~~l~~~A~~~g--~riiGPNc~Gi----i~p~~~~lgi~p~-~~~~pG--~VgivSqSG~l~~--e----~~ 167 (300) ...+.... +.+++.+ +.+++....+. +.++....+-+.. ++.+.| +|++++..-.... + .. T Consensus 76 ~~~~~~~~----~~l~~~~ipvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~l~~~~~~~~~~~R~~gf~ 151 (290) T 2rgy_A 76 HDLHDEDL----DELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFF 151 (290) T ss_dssp SSSCHHHH----HHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHH T ss_pred CCCCHHHH----HHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHH T ss_conf 65897999----99996499789990677888687898566999999999999839851621778732220677777888 Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC Q ss_conf 999971995167640556744678999999999739987288999705872489999999986422675 Q gi|254781050|r 168 FQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRK 236 (300) Q Consensus 168 ~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~ 236 (300) +.+.+.|.-.....-..+|......+...-+++...|..++|+.. .+.-+..+++..++..++ T Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------~d~~a~g~~~al~~~g~~ 214 (290) T 2rgy_A 152 DELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCA------NDTMAVSALARFQQLGIS 214 (290) T ss_dssp HHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEES------SHHHHHHHHHHHHHTTCC T ss_pred HHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC------CCHHHHHHHHHHHHCCCC T ss_conf 889970998650220146888899999997520025676338853------738888899999986998 No 372 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=21.52 E-value=36 Score=13.62 Aligned_cols=84 Identities=11% Similarity=-0.027 Sum_probs=41.2 Q ss_pred EEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCEEECCCCCCCC-CCCCHHHHCCCCCCCEEEEECCHHHHHHHH Q ss_conf 39998888437799999998626-9818997658998868727745775-314078503578863688621204567889 Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYC-QTQVVGGIHPKKGSTYWTGGNVNVP-VFTTVAEAKERTAANASVIYVPPSGAGDAI 87 (300) Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~-gt~ivagV~Pgkgg~~~~g~~~~iP-vy~sv~ea~~~~~~D~avI~VP~~~v~dai 87 (300) ||+|-|-=|||-.. .+.+... .-.-|. +.||-+|..-..+...+. =++.+.+..++..+|+.++--..+.+...+ T Consensus 2 kVLviGsGgrEhAi--a~~l~~~~~~~~v~-~~pgN~g~~~~~~~~~~~~d~~~i~~~~~~~~idlvivGpE~pL~~gl~ 78 (417) T 2ip4_A 2 KVLVVGSGGREHAL--LWKAAQSPRVKRLY-AAPGNAGMEALAELVPWNGDVEALADWALAEGIDLTLVGPEAPLVEGIA 78 (417) T ss_dssp EEEEEESSHHHHHH--HHHHHTCSSCCEEE-EEECCTTGGGTSEECCCCSCHHHHHHHHHHHTCCEEEECSSHHHHTTHH T ss_pred EEEEECCCHHHHHH--HHHHHHCCCCCEEE-EECCCHHHHHHCEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHH T ss_conf 89998978999999--99997299989899-9689767775174215668999999999985999999897478887889 Q ss_pred HHHHHCCCC Q ss_conf 999853995 Q gi|254781050|r 88 IESIEAEIP 96 (300) Q Consensus 88 ~Ea~~agik 96 (300) ...-++|++ T Consensus 79 d~l~~~gi~ 87 (417) T 2ip4_A 79 DAFQARGLL 87 (417) T ss_dssp HHHHHHTCC T ss_pred HHHHHCCCC T ss_conf 999857997 No 373 >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Probab=21.36 E-value=36 Score=13.60 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=48.0 Q ss_pred CEEEEECCCCCCEEECCCCCCCCCCCCHHHH----CCCCCCCEEEEECCHHH----HHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1899765899886872774577531407850----35788636886212045----678899998539958998058846 Q gi|254781050|r 35 QVVGGIHPKKGSTYWTGGNVNVPVFTTVAEA----KERTAANASVIYVPPSG----AGDAIIESIEAEIPLIVCITEGIP 106 (300) Q Consensus 35 ~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea----~~~~~~D~avI~VP~~~----v~dai~Ea~~agik~iviiteGip 106 (300) .-++.|.+.-+ .|-|..+.+. .++.++++.++. |... -...+.++++.++..+++.+.. T Consensus 5 k~i~~i~~~~~----------npf~~~~~~G~~~aa~~~g~~~~~~~-~~~~d~~~q~~~i~~~i~~~vDgIii~~~d-- 71 (303) T 3d02_A 5 KTVVNISKVDG----------MPWFNRMGEGVVQAGKEFNLNASQVG-PSSTDAPQQVKIIEDLIARKVDAITIVPND-- 71 (303) T ss_dssp EEEEEECSCSS----------CHHHHHHHHHHHHHHHHTTEEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSC-- T ss_pred CEEEEEECCCC----------CHHHHHHHHHHHHHHHHCCCEEEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEEECCC-- T ss_conf 88999978899----------86999999999999998299899996-899999999999999997599999995688-- Q ss_pred HHHHHHHHHHHHCCCCEEEE Q ss_conf 88899999984017718940 Q gi|254781050|r 107 VLDMVRVKARLEKSSSRLIG 126 (300) Q Consensus 107 ~~d~~~l~~~A~~~g~riiG 126 (300) ........+.+++.|+-++- T Consensus 72 ~~~~~~~l~~~~~~gIpVv~ 91 (303) T 3d02_A 72 ANVLEPVFKKARDAGIVVLT 91 (303) T ss_dssp HHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHHHCCCEEEE T ss_conf 37779999999976987999 No 374 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=21.20 E-value=37 Score=13.57 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-CE-E-EEECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHH Q ss_conf 999999986422675526899843015765532-20-0-11224888899999999998897--5788989999999999 Q gi|254781050|r 222 EAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTM-GH-A-GAVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVEL 296 (300) Q Consensus 222 ~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~-gH-a-GAi~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~ 296 (300) +..++++..++.+ .+||++=..=++...-+++ .| | |.++ ||+-. ..+.++.- ...+.+.++.+.|+++ T Consensus 188 ~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~v~~~~~~gADGvVV----GSaiv--~~i~~~~~~~~~~~~~~~~~~~lk~a 260 (262) T 1rd5_A 188 RVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVII----GSAMV--RQLGEAASPKQGLRRLEEYARGMKNA 260 (262) T ss_dssp HHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEE----CHHHH--HHHHSSSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCCEEEE----CHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 2788999875136-88779992789999999998549999998----88999--99997588889999999999999986 Q ss_pred H Q ss_conf 8 Q gi|254781050|r 297 L 297 (300) Q Consensus 297 l 297 (300) | T Consensus 261 l 261 (262) T 1rd5_A 261 L 261 (262) T ss_dssp H T ss_pred H T ss_conf 2 No 375 >3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Probab=21.17 E-value=37 Score=13.57 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=60.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHHHH Q ss_conf 679998054147899999997199516764055674467899999999973998728899970-5872489999999986 Q gi|254781050|r 152 SVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGE-IGGSAEEEAAQFLKDE 230 (300) Q Consensus 152 ~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gE-iGG~~E~~aa~fi~~~ 230 (300) +|=+|--+-.....+..++.+.|+-.....+. -.+.++++.+.+- +.|++-.. .++..-.+.++.++.. T Consensus 11 ~ILvVDD~~~~~~~l~~~L~~~G~~v~~~a~~---------~~eal~~~~~~~~-dlvi~D~~mp~~~dG~~l~~~lr~~ 80 (140) T 3cg0_A 11 GVLIVEDGRLAAATLRIQLESLGYDVLGVFDN---------GEEAVRCAPDLRP-DIALVDIMLCGALDGVETAARLAAG 80 (140) T ss_dssp EEEEECCBHHHHHHHHHHHHHHTCEEEEEESS---------HHHHHHHHHHHCC-SEEEEESSCCSSSCHHHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHC T ss_conf 89999799999999999999879989999789---------9999999982799-8899976787679899999999857 Q ss_pred HHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC----EECCCHHHHHHHHHHHHHC Q ss_conf 42267552689984301576553220011224888899999999998897----5788989999999999843 Q gi|254781050|r 231 AKRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI----CIAPSPARIGRSLVELLGS 299 (300) Q Consensus 231 ~~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv----~v~~s~~el~~~l~~~l~~ 299 (300) ..-|||.+. +.. +.+....++ ++|+ .-+-++++|...+..+|.+ T Consensus 81 ----~~~piI~lt-~~~-------------------~~~~~~~a~-~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 128 (140) T 3cg0_A 81 ----CNLPIIFIT-SSQ-------------------DVETFQRAK-RVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140) T ss_dssp ----SCCCEEEEE-CCC-------------------CHHHHHHHH-TTCCSEEEEESCCHHHHHHHHHHHHHH T ss_pred ----CCCCEEEEE-CCC-------------------CHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf ----999689996-689-------------------999999999-879998997989999999999999999 No 376 >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Probab=21.04 E-value=37 Score=13.55 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=42.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCEEEE-ECCC-----------------CCCEEE----CCCCCCCCCCCCHHHHC Q ss_conf 7399988884377999999986269818997-6589-----------------988687----27745775314078503 Q gi|254781050|r 9 TKVLVQGLTGKAGTFHTEQAILYCQTQVVGG-IHPK-----------------KGSTYW----TGGNVNVPVFTTVAEAK 66 (300) Q Consensus 9 t~vivqGitg~~g~~~~~~~~~y~gt~ivag-V~Pg-----------------kgg~~~----~g~~~~iPvy~sv~ea~ 66 (300) .||.|.|- |..|+-.+...... |-+|+-- ++|. +.|..- ......+..-++. ++. T Consensus 313 ~kv~ViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l 389 (725) T 2wtb_A 313 KKVAIIGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF 389 (725) T ss_dssp CCEEEECC-SHHHHHHHHHHHTT-TCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCH-HHH T ss_conf 77999897-68999999999865-9981573557578887898999999998761310078899998315776777-774 Q ss_pred CCCCCCEEEEECCHH-HHHHHHHHHHHCCCCE---EEEECCCCCHHH Q ss_conf 578863688621204-5678899998539958---998058846888 Q gi|254781050|r 67 ERTAANASVIYVPPS-GAGDAIIESIEAEIPL---IVCITEGIPVLD 109 (300) Q Consensus 67 ~~~~~D~avI~VP~~-~v~dai~Ea~~agik~---iviiteGip~~d 109 (300) . ++|+-+=+||-. .++..++.-++.-++. +.--|+++|..+ T Consensus 390 ~--~~DlViEav~E~l~iK~~v~~~le~~~~~~aIlasNTS~l~i~~ 434 (725) T 2wtb_A 390 R--DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNK 434 (725) T ss_dssp T--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH T ss_pred C--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH T ss_conf 4--67768870445300125689999864676069983576447898 No 377 >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Probab=20.99 E-value=35 Score=13.72 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.8 Q ss_pred CCEEEEEEEE Q ss_conf 5268998430 Q gi|254781050|r 237 KPIVGFVAGK 246 (300) Q Consensus 237 KPVva~~~Gr 246 (300) +-|..|..|. T Consensus 134 ~~i~v~~igi 143 (189) T 1atz_A 134 NRVTVFPIGI 143 (189) T ss_dssp TTEEEEEEEE T ss_pred CCCEEEEEEE T ss_conf 8999999995 No 378 >2i5e_A Hypothetical protein MM_2497; APC86122, hypothetic protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei GO1} SCOP: c.68.1.21 Probab=20.98 E-value=37 Score=13.55 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=64.7 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEE Q ss_conf 12045678899998539958998058846888999999840177189406851013555100020011235778679998 Q gi|254781050|r 78 VPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILS 157 (300) Q Consensus 78 VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivS 157 (300) .+...--+++.++.+.+-+.+++|-.-+|..+...+.+..+...-.+|||..-|-.+ -++..+...+.. T Consensus 71 ~~~~~L~~al~~a~~~~~~~vliig~DlP~l~~~~l~~a~~~~~d~Vi~Pa~DGG~n----~L~~~~~~~~~f------- 139 (211) T 2i5e_A 71 LDEKDLNEALNRYLKEAEEPVLIVMADLPLLSPEHIKEISSTEKDVCIVPGKGGGTN----ALFIKNPSKYRV------- 139 (211) T ss_dssp ECCSCHHHHHHHHHHHCCSCEEEECSCCTTCCHHHHHHHTTCSSSEEEEECGGGCEE----EEEESCGGGCCC------- T ss_pred ECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECCCCEE----EEEECCCCCCCC------- T ss_conf 068877899999997177718994376465899999999756872999974799882----776447766687------- Q ss_pred ECCCHHH-HHHHHHHHCCCCEEEEEEC--CCCCCCCCCHHHHHHHHHC Q ss_conf 0541478-9999999719951676405--5674467899999999973 Q gi|254781050|r 158 RSGTLTY-EAVFQTSQEGLGQSTAVGI--GGDPVKGTEFIDVLELFLA 202 (300) Q Consensus 158 qSG~l~~-e~~~~~~~~g~G~S~~Vsi--G~D~~~G~~~~d~L~~~~~ 202 (300) +-|.-++ .-...+.+.|+.....-.. .-|.+ +..|+.++|.. T Consensus 140 ~~g~~S~~~h~~~a~~~gl~~~~~~~~~l~~DID---tpeDL~~ll~~ 184 (211) T 2i5e_A 140 KYYGSSFLTHCSIATDSGQDFEIYDSFMAGTDID---EPEDLVELLIH 184 (211) T ss_dssp CCSSSHHHHHHHHHHTTTCCEEECCCTTTTCCCC---SHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CHHHHHHHHHH T ss_conf 7686109999999998799489826866472899---98999999982 No 379 >2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A Probab=20.43 E-value=38 Score=13.47 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=50.2 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-----CEEEEECC Q ss_conf 4678999999999739987288999705872489999999986422675526899843015765532-----20011224 Q gi|254781050|r 188 VKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIVGFVAGKTAPPGRTM-----GHAGAVIS 262 (300) Q Consensus 188 ~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVva~~~GrtAp~g~~~-----gHaGAi~~ 262 (300) ++|.+ .++++.+.+ ...+.||+.+-=-|+.-.+..++++.+.+ ...||| .+-|+...+..+ ...|+|.+ T Consensus 227 ~pg~~-~~~l~~~~~-~~~~GiVl~g~G~G~~p~~~~~~l~~a~~--~gi~Vv--~~sq~~~G~v~~~~~~l~~~Gvi~~ 300 (332) T 2wlt_A 227 HAGMT-PDLFQASLN-SHAKGVVIAGVGNGNVSAGFLKAMQEASQ--MGVVIV--RSSRVGSGGVTSGEIDDKAYGFITS 300 (332) T ss_dssp CTTCC-THHHHHHHH-TTCSEEEEEEBTTTBCCHHHHHHHHHHHH--TTCEEE--EEESSSSSCCCSSSSCHHHHTCEEC T ss_pred CCCCC-HHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCEEE--EEEECCCCCCCCCCCCHHHCCEEEC T ss_conf 89999-999999987-69988999843798999899999999997--798799--9850798872667445522997889 Q ss_pred CCCCCHH--HHHH-HHHHCCCEECCCHHHHHHHHH Q ss_conf 8888999--9999-999889757889899999999 Q gi|254781050|r 263 GGKGGAE--DKIN-AMKEAGICIAPSPARIGRSLV 294 (300) Q Consensus 263 ~~~g~a~--~k~~-al~~aGv~v~~s~~el~~~l~ 294 (300) +.+.... .|.. +|.+ | .+++|+-+++. T Consensus 301 g~mt~e~A~vkL~~~L~~-~----~~~~ei~~~f~ 330 (332) T 2wlt_A 301 DNLNPQKARVLLQLALTK-T----NDKAKIQEMFE 330 (332) T ss_dssp TTCCHHHHHHHHHHHHHH-C----CCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHC-C----CCHHHHHHHHH T ss_conf 998999999999999838-9----99999999997 No 380 >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Probab=20.41 E-value=20 Score=15.25 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=33.1 Q ss_pred CCHHHHCCCC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 4078503578--8636886212045678899998539958998058846888999999840177189 Q gi|254781050|r 60 TTVAEAKERT--AANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRL 124 (300) Q Consensus 60 ~sv~ea~~~~--~~D~avI~VP~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~ri 124 (300) ..+++..+.+ ..|+-+....|..- +.+..++|...+.+..|-.. +..++.+.+|+.|++. T Consensus 51 ~~i~~i~~~t~~~~dvHLMv~~P~~~---i~~~~~~g~d~I~~H~E~~~--~~~~~i~~i~~~g~~~ 112 (220) T 2fli_A 51 DVVASMRKHSKLVFDCHLMVVDPERY---VEAFAQAGADIMTIHTESTR--HIHGALQKIKAAGMKA 112 (220) T ss_dssp HHHHHHHTTCCSEEEEEEESSSGGGG---HHHHHHHTCSEEEEEGGGCS--CHHHHHHHHHHTTSEE T ss_pred HHHHHHHHCCCCCEEEEEECCCHHHH---HHHHHHCCCCEEEECHHHHC--CHHHHHHHHHHCCCEE T ss_conf 99998863689767999851798888---99998659978995323320--8899999998769869 No 381 >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Probab=20.09 E-value=39 Score=13.43 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=51.5 Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-----------------CEEECCCCCCCCCCCCHHHHCCCC Q ss_conf 797399988884377999999986269818997658998-----------------868727745775314078503578 Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG-----------------STYWTGGNVNVPVFTTVAEAKERT 69 (300) Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg-----------------g~~~~g~~~~iPvy~sv~ea~~~~ 69 (300) +-+||+|-|.||..|+.-.+..++- |..|.+-+..... -+.+.++..+ -+++.++.+ T Consensus 3 ~M~KILItGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~v~~D~~d---~~~~~~~~~-- 76 (321) T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE---HEKMVSVLK-- 76 (321) T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC---HHHHHHHHT-- T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCC---HHHHHHHCC-- T ss_conf 9888999899828999999999978-9908999899866556778887876414981999964577---044454244-- Q ss_pred CCCEEEEECCHHH---HHHHHHHHHHCCCCEEEEEC Q ss_conf 8636886212045---67889999853995899805 Q gi|254781050|r 70 AANASVIYVPPSG---AGDAIIESIEAEIPLIVCIT 102 (300) Q Consensus 70 ~~D~avI~VP~~~---v~dai~Ea~~agik~iviit 102 (300) ++|+.+-.++... ....+..+..++....++.+ T Consensus 77 ~~d~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 112 (321) T 3c1o_A 77 QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPS 112 (321) T ss_dssp TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECS T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEE T ss_conf 445887446665443212256777634854699975 No 382 >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Probab=20.05 E-value=39 Score=13.42 Aligned_cols=116 Identities=8% Similarity=0.032 Sum_probs=52.6 Q ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 67999805414789999999719951676405567446789999999997399872889997058724899999999864 Q gi|254781050|r 152 SVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEA 231 (300) Q Consensus 152 ~VgivSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~ 231 (300) +|=+|=-+-....-+...+.+.+.|....... |-.+.|+.+.+.+ -+.|++=...-+..-.+.++.++... T Consensus 10 ~ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~--------~g~eAl~~~~~~~-pDlillD~~mP~~dG~el~~~ir~~~ 80 (143) T 3cnb_A 10 SILIIEDDKEFADMLTQFLENLFPYAKIKIAY--------NPFDAGDLLHTVK-PDVVMLDLMMVGMDGFSICHRIKSTP 80 (143) T ss_dssp EEEEECSCHHHHHHHHHHHHHHCTTCEEEEEC--------SHHHHHHHHHHTC-CSEEEEETTCTTSCHHHHHHHHHTST T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEC--------CHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHCC T ss_conf 99999199999999999998278980899989--------9999999997279-99999808889998699999998478 Q ss_pred HCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC----EECCCHHHHHHHHHHHHH Q ss_conf 2267552689984301576553220011224888899999999998897----578898999999999984 Q gi|254781050|r 232 KRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI----CIAPSPARIGRSLVELLG 298 (300) Q Consensus 232 ~~~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv----~v~~s~~el~~~l~~~l~ 298 (300) ....-|||++ ++.. ..+....++ ++|+ .-+-++++|...+.++|. T Consensus 81 -~~~~ipvI~l-t~~~-------------------~~~~~~~~~-~~Ga~~yl~KP~~~~~L~~~i~~~l~ 129 (143) T 3cnb_A 81 -ATANIIVIAM-TGAL-------------------TDDNVSRIV-ALGAETCFGKPLNFTLLEKTIKQLVE 129 (143) T ss_dssp -TTTTSEEEEE-ESSC-------------------CHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH T ss_pred -CCCCCEEEEE-ECCC-------------------CHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf -8899849999-8489-------------------989999999-76998999898999999999999997 Done!