BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (300 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 599 bits (1545), Expect = e-173, Method: Compositional matrix adjust. Identities = 300/300 (100%), Positives = 300/300 (100%) Query: 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT 60 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT Sbjct: 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT 60 Query: 61 TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120 TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS Sbjct: 61 TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120 Query: 121 SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA 180 SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA Sbjct: 121 SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA 180 Query: 181 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV Sbjct: 181 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 Query: 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL Sbjct: 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300 >gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 29.6 bits (65), Expect = 0.063, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 232 KRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGR 291 K G +KP GF +GK R +I+ GKG +D ++++ E + P R+ + Sbjct: 34 KTGNEKPFSGFFSGKYVFSKR---DERGIITLGKGKKKDNLDSINE----LFPIGTRLNK 86 Query: 292 SLVELLG 298 + +++ Sbjct: 87 VMRDIVS 93 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 22.7 bits (47), Expect = 7.9, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 147 IFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDP 187 ++ KG++ L G++ +E + S LG A+GIGG P Sbjct: 26 VYGKGAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFP 65 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.135 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,935 Number of Sequences: 1233 Number of extensions: 6916 Number of successful extensions: 9 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 3 length of query: 300 length of database: 328,796 effective HSP length: 73 effective length of query: 227 effective length of database: 238,787 effective search space: 54204649 effective search space used: 54204649 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 38 (19.2 bits)