HHsearch alignment for GI: 254781051 and conserved domain: cd00568
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=96.73 E-value=0.01 Score=40.25 Aligned_cols=146 Identities=20% Similarity=0.177 Sum_probs=90.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 43223455510015026889835961899971787731000445532367777641666544555654454047888625
Q gi|254781051|r 298 PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHG 377 (957)
Q Consensus 298 ~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHG 377 (957)
T Consensus 11 ~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~~a~p~----------------~~v--v~i~G 72 (168)
T cd00568 11 PEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPD----------------RPV--VCIAG 72 (168)
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC----------------CEE--EEEEC
T ss_conf 999699987527699999975628999598289875377799999999987899----------------839--99977
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCH-----------HCCCCCCCCHHHHHHCCCEEEECCCC
Q ss_conf 7533346725887645106774436579998416020124701-----------02467784001122034058742678
Q gi|254781051|r 378 DAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS-----------SARSCTYASDISKSIGIPIFHVNGDD 446 (957)
Q Consensus 378 DAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~-----------d~RSs~Y~TDiAK~i~aPI~HVN~Dd 446 (957)
T Consensus 73 DG~f~~~~~el~ta~~~~l~------i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~ 144 (168)
T cd00568 73 DGGFMMTGQELATAVRYGLP------VIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE--D 144 (168)
T ss_pred CCCCEECCHHHHHHHHCCCC------EEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--C
T ss_conf 97421131766456531884------269999776136779999850289876565888877899997498699989--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 899999999999999973897399864
Q gi|254781051|r 447 PEAVIRVVRMAVSFRMKFHKSVVIDIV 473 (957)
Q Consensus 447 pEav~~~~~lA~~yR~~F~kDVvIDlv 473 (957)
T Consensus 145 ~~el~~al~~a~----~~~~p~li~V~ 167 (168)
T cd00568 145 PEDLEAALAEAL----AAGGPALIEVK 167 (168)
T ss_pred HHHHHHHHHHHH----HCCCCEEEEEE
T ss_conf 999999999998----38997899998