HHsearch alignment for GI: 254781051 and conserved domain: cd02001
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=90.23 E-value=1.6 Score=23.70 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=66.9
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH---HCCCCCCCCCEEEEEECCCE
Q ss_conf 004455323677776416665445556544540478886257533346725887645---10677443657999841602
Q gi|254781051|r 337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGL---SGLSGYTVAGNIHLIINNQI 413 (957)
Q Consensus 337 aVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~l---s~l~gY~tGGTiHiVvNNQI 413 (957)
T Consensus 46 ~~~~~alG~al~~p-----------------~kVi~--idGDGs~l--------M~lg~LaTi~~~~~~nl~~ivlnN~~ 98 (157)
T cd02001 46 LAGSIGLGLALGLS-----------------RKVIV--VDGDGSLL--------MNPGVLLTAGEFTPLNLILVVLDNRA 98 (157)
T ss_pred HHHHHHHHHHHCCC-----------------CCEEE--EECCHHHH--------HCCCHHHHHHHCCCCCEEEEEEECCC
T ss_conf 28899999985389-----------------96899--95755887--------52461999986389887999997975
Q ss_pred ECCC-C-CHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 0124-7-01024677840011220340587426788999999999999999738973998642
Q gi|254781051|r 414 GFTT-N-PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC 474 (957)
Q Consensus 414 GFTT-~-p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~ 474 (957)
T Consensus 99 ~~s~GgQ~t~~-~~~df~~iA~a~G~~~~~v--~~~~el~~al~~~l----~~~GP~fIeV~I 154 (157)
T cd02001 99 YGSTGGQPTPS-SNVNLEAWAAACGYLVLSA--PLLGGLGSEFAGLL----ATTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCCCCC-CCCCHHHHHHHCCCCEEEE--CCHHHHHHHHHHHH----CCCCCEEEEEEE
T ss_conf 32467856754-4669999999869857995--89999999999998----499998999995