HHsearch alignment for GI: 254781051 and conserved domain: pfam00676

>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=99.97  E-value=7e-27  Score=223.02  Aligned_cols=291  Identities=22%  Similarity=0.279  Sum_probs=240.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEC----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999989999986403362222----564658999999999998737910799806765526899988537989999985
Q gi|254781051|r  218 LVRAEGFEKFIDIKYKGAKRFG----ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEF  293 (957)
Q Consensus       218 L~~Ae~FE~FL~~Kf~g~KRFs----LEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF  293 (957)
T Consensus         3 ~m~~~r~ed~~~~~~~~~~~~g~~h~~~GqEA~~vg~~~~l------~~~D~~~~~-yR~~g~~la~--G~~~~~~~ae~   73 (303)
T pfam00676         3 MMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAAL------NPGDYVIPT-YRDHGNLLAR--GVSLEQVMAEL   73 (303)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCEEEEC-HHHHHHHHHC--CCCHHHHHHHH
T ss_conf             55999999999999973898246489888899999999976------999999806-6669999981--99999999997


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf             58874322345551001502688983596189997178773100044553236777764166654455565445404788
Q gi|254781051|r  294 KGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPL  373 (957)
Q Consensus       294 ~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpi  373 (957)
T Consensus        74 ~Gk~~g~~~Grggs-mh~~~~~--------~~~~~~~~~~~vg~~~~~avG~A~a~k~~~~--------------~~v~v  130 (303)
T pfam00676        74 TGNEAGCSKGKGGS-MHGYYAP--------KNNRFYGGNGIVGAQVPLGAGIALAAKYRGK--------------KEVAI  130 (303)
T ss_pred             CCCCCCCCCCCCCC-CCCCCCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--------------CCEEE
T ss_conf             78988998999997-7457666--------4455147874130482265668999996389--------------98799


Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf             86257533346725887645106774436579998416020124701024677840011220340587426788999999
Q gi|254781051|r  374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRV  453 (957)
Q Consensus       374 liHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~  453 (957)
T Consensus       131 ~~~GDGa-~~~G~f~EalN~A~~~~lP---vifv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~  206 (303)
T pfam00676       131 TLFGDGA-TNQGQFFEALNFAALWKLP---VIFVCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQA  206 (303)
T ss_pred             EEECCCC-CCCCHHHHHHHHHHHCCCC---EEEEEEECCCCCCCCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHH
T ss_conf             9967997-5232999999987543898---79999527733666664514755488886525802896488658999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC-HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999997389739986421125656435422355-788888671899899999998644898989999999999999
Q gi|254781051|r  454 VRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ-PMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKY  532 (957)
Q Consensus       454 ~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQ-P~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~  532 (957)
T Consensus       207 ~~~a~~~aR~g~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~e  286 (303)
T pfam00676       207 VKFAAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKE  286 (303)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99999998648998899875113786678888767779899999886599699999999987999999999999999999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             775666541258
Q gi|254781051|r  533 LEAEYKESESYC  544 (957)
Q Consensus       533 l~~~~~~~k~~~  544 (957)
T Consensus       287 v~~a~~~A~~~p  298 (303)
T pfam00676       287 IEEAVKKAESDP  298 (303)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998086