HHsearch results for GI: 254781051 and protein with PDBid: 1gpu_A
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.68 E-value=5.4e-05 Score=55.84 Aligned_cols=468 Identities=15% Similarity=0.128 Sum_probs=237.7
Q ss_pred CCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE
Q ss_conf 31000445532367777641666544555654454047888625753334672588764510677443657999841602
Q gi|254781051|r 334 HLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI 413 (957)
Q Consensus 334 HLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI 413 (957)
||=.-=+++.|.|.|+........ .........+|++|. ||++.. .|.++|.||+..-.. .+--|=|+=+|++
T Consensus 117 ~~G~gis~A~G~A~A~k~l~~~~~--~~~l~~~~~~vv~vi--GDG~l~-eG~a~EAln~Ag~~~--l~nLivIlndN~~ 189 (680)
T 1gpu_A 117 PLGQGISNAVGMAMAQANLAATYN--KPGFTLSDNYTYVFL--GDGCLQ-EGISSEASSLAGHLK--LGNLIAIYDDNKI 189 (680)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHC--BTTBCCCCCCEEEEE--CHHHHH-SHHHHHHHHHHHHTT--CTTEEEEEEECSE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCEEEEEE--CCCCCC-CHHHHHHHHHHHHHC--CCCEEEEECCCCC
T ss_conf 757889999999999999754306--667666786699994--676656-689999999988757--9988999858963
Q ss_pred ECCCCCHHCCCCCCCCHHHHHH---CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 0124701024677840011220---3405874267889999999999999997389739986421125656435422355
Q gi|254781051|r 414 GFTTNPSSARSCTYASDISKSI---GIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ 490 (957)
Q Consensus 414 GFTT~p~d~RSs~Y~TDiAK~i---~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQ 490 (957)
.-.++. +.....|+.+.+ +--++-|.+.+......+..++...+.+ .|.++|-....+-+|+-..+.+..-
T Consensus 190 si~~~~----~~~~~~~~~~~~~~~Gw~v~~v~~~~~~~~~~~~~~~~~~~~~-~kp~~i~~~t~~g~G~~~~~~~~~~- 263 (680)
T 1gpu_A 190 TIDGAT----SISFDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK-DKPTLIKMTTTIGYGSLHAGSHSVH- 263 (680)
T ss_dssp ETTEEG----GGTCCCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHCT-TSCEEEEEECCTTTTSTTTTSGGGS-
T ss_pred EECCCC----CCCCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCCCCCCC-
T ss_conf 236754----4432357999999619708996032056899999999999834-8862133233112366322442111-
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHH-------HHHHHHH---------------HH
Q ss_conf 7888886718998999999986448-------98989999999999999-------7756665---------------41
Q gi|254781051|r 491 PMMYKTIRSHKSVLQLYADSLMKNQ-------VISKQELQSLANNWHKY-------LEAEYKE---------------SE 541 (957)
Q Consensus 491 P~mY~~I~~hp~v~~~Y~~~Li~~g-------~it~~e~~~~~~~~~~~-------l~~~~~~---------------~k 541 (957)
..+............-| .+..+..+......... ....... .+
T Consensus 264 --------~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (680)
T 1gpu_A 264 --------GAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLS 335 (680)
T ss_dssp --------SSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred --------CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_conf --------464201577789998488877673664478899987653110358999988777664207077899998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 25876566665686266677899-99999988743-68998620567788899899873343564211478988898863
Q gi|254781051|r 542 SYCPEKLGLLHNGENERKNSVSK-EILKKIGSSII-RLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCY 619 (957)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~T~v~~-~~L~~i~~~l~-~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~ 619 (957)
...|................+.. .........+. .+|+ -.+....+.-.++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------------------~~~~~~~~~~~~~~~ 390 (680)
T 1gpu_A 336 GQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPE-------------------------LIGGSADLTPSNLTR 390 (680)
T ss_dssp TCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTT-------------------------EEEEESSCHHHHTCS
T ss_pred CCCCCCHHCCCCCHHCCCCCCCHHHCCHHHHHHHHHHCHH-------------------------HHCCCCCCCCCCCHH
T ss_conf 7887301102431000134310011004578999885634-------------------------413552113432001
Q ss_pred CCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCC-CCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 58315785010022333230279997788844556344278-98459998243111101343202211386531110000
Q gi|254781051|r 620 EGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISK-DQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQ 698 (957)
Q Consensus 620 eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~-~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQ 698 (957)
..|. ..+.++..... -.++ ++|.-..|.+..+|--|.++.-- .+.-+=+.
T Consensus 391 ------~~~~--------------------~~~~~~~~~~~~~pgr--~~d~GIaE~~~~~~a~GlA~~G~-~~~p~~~~ 441 (680)
T 1gpu_A 391 ------WKEA--------------------LDFQPPSSGSGNYSGR--YIRYGIREHAMGAIMNGISAFGA-NYKPYGGT 441 (680)
T ss_dssp ------CTTC--------------------CEECCTTTSSEETTCC--EEECCSCHHHHHHHHHHHHHHCT-TCEEEEEE
T ss_pred ------HCCC--------------------CCCCCCCCCCCCCCCC--EEEHHHHHHHHHHHHHCCCCCCC-CCEEEHHH
T ss_conf ------1145--------------------5566642001368975--01113667768988521100256-41020125
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCC--CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 2442454102256554202576233368135436888--88887656440578875214378269724889999999999
Q gi|254781051|r 699 FGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGY--EGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776 (957)
Q Consensus 699 FGDF~NgAQviiDqfiss~e~KW~~~sglvllLPHGy--eGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRR 776 (957)
|..|. |-..||.+..+ |.+..-++....-|. -..||-|.+..--=+| ..-.||.|..|+.+...-++|+.
T Consensus 442 ~~~f~---~~~~~~~~~~~---~~~~~~v~~~~~~g~~~g~dG~tH~~~~di~~~--r~iPn~~v~~P~d~~e~~~~l~~ 513 (680)
T 1gpu_A 442 FLNFV---SYAAGAVRLSA---LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHF--RSLPNIQVWRPADGNEVSAAYKN 513 (680)
T ss_dssp EHHHH---GGGHHHHHHHH---HHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHH--HTSSSCEEECCCSHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHH---HHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHH--CCCCCEEEECCCCHHHHHHHHHH
T ss_conf 57999---98889999861---105884353136654314898754441126552--25886268758999999999999
Q ss_pred HHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHH
Q ss_conf 74353488689856602210801268878937998603515776433444544457954576899868857899999999
Q gi|254781051|r 777 QIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRD 856 (957)
Q Consensus 777 Q~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~ 856 (957)
-+.+ ...|.++..||.-+.... ....+....|. . ++-+ .+.-+=.|+++|-....-+++.+
T Consensus 514 ~~~~-~~~p~~i~~~r~~~~~~~-~~~~~~~~~g~-~--~~~~--------------~~g~dv~iia~G~~v~~al~aa~ 574 (680)
T 1gpu_A 514 SLES-KHTPSIIALSRQNLPQLE-GSSIESASKGG-Y--VLQD--------------VANPDIILVATGSEVSLSVEAAK 574 (680)
T ss_dssp HHHC-SSCCEEEECCSSCBCCCT-TCCHHHHTTSC-E--EEEC--------------CSSCSEEEEECTHHHHHHHHHHH
T ss_pred HHHH-CCCCCEEECCCCCCCCCC-CCHHHHHCCCE-E--EEEE--------------CCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 9875-289844525666778667-75054540671-8--9997--------------79998999964499999999999
Q ss_pred HCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 7699--8689998401486828999999853799839980678531784
Q gi|254781051|r 857 MRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGA 903 (957)
Q Consensus 857 ~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~Ga 903 (957)
.... -++.+|-+=-+-||-.+.+...++-.++...+-+-|+-.-.|.
T Consensus 575 ~L~~~gi~~~Vi~~~~~kpld~~~~~~~~~~~~~~~~iv~vE~~~~~~~ 623 (680)
T 1gpu_A 575 TLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTCW 623 (680)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCSTTG
T ss_pred HHHHCCCCEEEEECCCCCHHHHCCHHHHHHHHCCCCEEEEEECCHHHCC
T ss_conf 9996699879996898636665759999997179986999934453115