HHsearch results for GI: 254781051 and protein with PDBid: 1umd_B
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=98.69 E-value=4.5e-06 Score=63.98 Aligned_cols=293 Identities=18% Similarity=0.286 Sum_probs=184.1
Q ss_pred HHHHHHCCCEEEEECCCCCC--CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 89886358315785010022--3332302799977888445563442789845999824311110134320221138653
Q gi|254781051|r 614 FGSLCYEGYKVRLSGQDCER--GTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNA 691 (957)
Q Consensus 614 ~~SLl~eG~~VRlsGQD~~R--GTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~ 691 (957)
.-.++.+.-.|=+-|+|+.. |.|.- ..+ -+....|+ + ++|.+.+|...+|+--|.|+.- -
T Consensus 14 l~e~~~~d~~vv~l~~Dl~~~~g~~~~--------~~~----~~~k~~pd--R--~i~~GIaEq~mvg~AaGlA~~G--~ 75 (324)
T 1umd_B 14 LDEEMAKDPRVVVLGEDVGKRGGVFLV--------TEG----LLQKYGPD--R--VMDTPLSEAAIVGAALGMAAHG--L 75 (324)
T ss_dssp HHHHHHHCTTEEEEETTCSTTCCTTST--------TTT----HHHHHCTT--T--EEECCSCHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCHHH--------HHH----HHHHHCCC--C--EEECCCCHHHHHHHHHHHHHCC--C
T ss_conf 999996595999996776767782032--------146----89985887--2--5435621899999999998367--8
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHH-HHHHC---CC-CCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCC
Q ss_conf 11100002442454102256554202-57623---33-681354368888888765644057887521437826972488
Q gi|254781051|r 692 LTIWEAQFGDFANGAQVILDQFITAG-EQKWL---CT-SNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTS 766 (957)
Q Consensus 692 L~iWEAQFGDF~NgAQviiDqfiss~-e~KW~---~~-sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~tt 766 (957)
.++.+-+|.+|.--| +||.+... -.+|. +. .-+|.-.|.|+-+.||-|-|-.-.-. |..-.||.|+.|++
T Consensus 76 ~p~~~~~~~~f~~ra---~dqi~~~~a~~~~~~~g~~~~~~v~~~~~g~~~~G~thh~~~d~~~--~~~iP~l~i~~P~~ 150 (324)
T 1umd_B 76 RPVAEIQFADYIFPG---FDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAH--FVHTAGLKVVAVST 150 (324)
T ss_dssp EEEEECSSGGGCGGG---HHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHH--HHTSTTCEEEECCS
T ss_pred CCEEEEEHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHH--HHHCCCCCEECCCC
T ss_conf 856998638776565---9999999998534307875787699957867678765455555999--95389972216899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHH--HHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEC
Q ss_conf 999999999974353488689856602210801268878--937998603515776433444544457954576899868
Q gi|254781051|r 767 PANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLS--DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCT 844 (957)
Q Consensus 767 pAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~--d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~cs 844 (957)
|.+.-.++|... ...+|-++..||.+.|.....-+-+ .|..|. -.++.+ .-+-.|+|+
T Consensus 151 ~~d~~~~~~~a~--~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~Gk--~~i~~~----------------G~dv~Iia~ 210 (324)
T 1umd_B 151 PYDAKGLLKAAI--RDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGK--AALRRE----------------GKDLTLICY 210 (324)
T ss_dssp HHHHHHHHHHHH--HCSSCEEEEEEGGGSSSCCEECCSSCCCCCTTC--CEEEEC----------------CSSEEEEEC
T ss_pred HHHHHHHHHHHH--HCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCE--EEEEEC----------------CCCEEEEEE
T ss_conf 999999999998--626994672451014677767898771556886--999973----------------896379975
Q ss_pred CHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCH-HHHHHHHHHHHHHCCCC
Q ss_conf 8578999999997699--86899984014868289999998537998399806785317845-78997699998750567
Q gi|254781051|r 845 GKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAW-TFIEPYLEKVLHSIGAD 921 (957)
Q Consensus 845 GKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW-~~v~~rl~~~l~~~~~~ 921 (957)
|-.-+.-+++.+.... -++.+|-+=.|.||+.+.|.+.++++.. +.+=||+...|+| +.+-..+.+-.... .+
T Consensus 211 G~~~~~al~aa~~L~~~gi~~~Vid~~~ikPlD~~~l~~~~~~~~~---vv~vEe~~~~GGlgs~i~~~i~e~~~~~-l~ 286 (324)
T 1umd_B 211 GTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGR---VVLVSDAPRHASFVSEVAATIAEDLLDM-LL 286 (324)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHHSC---EEEEEEEESTTCHHHHHHHHHHHHHGGG-CS
T ss_pred EHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHHHHHHHC-CC
T ss_conf 1548999999999996699779997236788868999999853492---8999838977869999999999976752-79
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7601897536646723386789999999999987
Q gi|254781051|r 922 YSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDA 955 (957)
Q Consensus 922 ~~~~~y~gR~~~aspA~G~~~~H~~e~~~li~~a 955 (957)
...++ +|-+....|... .+.+.---+.|++.+
T Consensus 287 ~~~~r-i~~~d~~~p~~~-~~~y~l~~~~I~~~i 318 (324)
T 1umd_B 287 APPIR-VTGFDTPYPYAQ-DKLYLPTVTRILNAA 318 (324)
T ss_dssp SCCEE-EEECSSCCCSTT-HHHHSCCHHHHHHHH
T ss_pred CCCEE-ECCCCCCCCCCH-HHHHCCCHHHHHHHH
T ss_conf 98489-755987999754-988298999999999