HHsearch results for GI: 254781051 and protein with PDBid: 3kom_A
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=95.53 E-value=0.15 Score=29.70 Aligned_cols=443 Identities=13% Similarity=0.138 Sum_probs=199.8
Q ss_pred CCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE
Q ss_conf 31000445532367777641666544555654454047888625753334672588764510677443657999841602
Q gi|254781051|r 334 HLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI 413 (957)
Q Consensus 334 HLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI 413 (957)
||=.-=+++.|.|+|+.....- ... ........+|.+++ ||++.. .|+++|.||+..-.+ ..--|-|+=||++
T Consensus 117 ~lG~g~s~A~G~A~a~~~~~~~-~~~-~~~~~~~~~v~~~i--GDG~l~-eG~~~EAl~~a~~~~--l~nLivi~d~N~~ 189 (663)
T 3kom_A 117 PLGQGVANAVGMALGEKLLSDR-YNT-PDLKVIDHHTYVFL--GDGCLM-EGVSHEACSLAGTLG--LNKLVAFWDDNNI 189 (663)
T ss_dssp STTHHHHHHHHHHHHHHHHHHH-HCB-TTBCSCCCCEEEEE--CHHHHH-SHHHHHHHHHHHHHT--CTTEEEEEEECC-
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-CCC-CCCCCCCCEEEEEE--CCCCCC-CHHHHHHHHHHHHCC--CCCEEEEECCCCC
T ss_conf 7068899999999999983012-367-64455675089997--665554-355899999996477--7765999758852
Q ss_pred ECCCCCHHCCCCCCCCHHHHHH---CCCEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC-CCCCC
Q ss_conf 0124701024677840011220---340587-426788999999999999999738973998642112565643-54223
Q gi|254781051|r 414 GFTTNPSSARSCTYASDISKSI---GIPIFH-VNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEG-DEPSF 488 (957)
Q Consensus 414 GFTT~p~d~RSs~Y~TDiAK~i---~aPI~H-VN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~-DeP~f 488 (957)
--..+.... . ..++.+.+ +--++. +++++.+....+..-+ .....+-.+|-.-.-.-+|.-.. +.+..
T Consensus 190 ~i~~~~~~~-~---~~~~~~rf~a~g~~v~~~~~~~~~~~~~~~~~~~---~~~~~~p~~i~~~T~kg~G~~~~~~~~~~ 262 (663)
T 3kom_A 190 SIDGDTKGW-F---SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEA---HSQQQKPTLICCKTVIGFGSPEKAGTASV 262 (663)
T ss_dssp ----CGGGT-C---CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHH---HHCSSSCEEEEEECCTTTTCTTTTTCSST
T ss_pred CCCCCCCCC-C---CCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH---HHCCCCCCEEECCCEEECCCCCCCCCCCC
T ss_conf 347864565-4---5117888760684589850675167788999876---53047851354255562488421357633
Q ss_pred C-------CHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5-------57888886718998999999986448989899999999999--99775666541258765666656862666
Q gi|254781051|r 489 T-------QPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH--KYLEAEYKESESYCPEKLGLLHNGENERK 559 (957)
Q Consensus 489 T-------QP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~--~~l~~~~~~~k~~~~~~~~~~~~~~~~~~ 559 (957)
. ++........++. +......++........ ..........+......
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 319 (663)
T 3kom_A 263 HGSPLSDQERASAAKELNWDY-----------QAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDS------------ 319 (663)
T ss_dssp TSSCCCHHHHHHHHHHTTCCC-----------CTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS------------
T ss_pred CCCCCCHHHHHHHHHHHCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_conf 565421057788988624556-----------676772467788876556668999988899986400------------
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH----CC-CEEEEECCCCCCC
Q ss_conf 778999999998874368998620567788899899873343564211478988898863----58-3157850100223
Q gi|254781051|r 560 NSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCY----EG-YKVRLSGQDCERG 634 (957)
Q Consensus 560 T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~----eG-~~VRlsGQD~~RG 634 (957)
...+....... ...+..+ -+......... ........+- -|++..|. .- .-+.+| .|...+
T Consensus 320 --~k~~~~~~~~~--~~~~~~~--~~~~~~~~~~~---~~~~~~~a~r----~a~~~~l~~l~~~~p~~~~~s-ad~~~~ 385 (663)
T 3kom_A 320 --PKFDEFERVLS--KELPVGL--ESAINDYIASQ---LSNPVKVATR----KASQMVLEVLCKNMPEMFGGS-ADLTGS 385 (663)
T ss_dssp --TTHHHHHHHHH--TCCCTTH--HHHHHHHHHHH---HHSCCCEEHH----HHHHHHHHHHHHHCTTEEEEE-CCC--C
T ss_pred --CCHHHHHHHHH--CCCCCCC--CCCCHHHHHHH---HHCCCCCHHH----HHHHHHHHHHHHHCCCEEEEC-CCCCCC
T ss_conf --20128888651--1233210--00201333333---4216660178----878999999997587859973-554577
Q ss_pred CCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 33230279997788844556344278984599982431111013432022113865311100002442454102256554
Q gi|254781051|r 635 TFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFI 714 (957)
Q Consensus 635 TFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfi 714 (957)
|...... ..+..-. ...++ .++....|.+..++--|.+... .+.-+-+-|.-| .|-..||.+
T Consensus 386 ~~~~~~~--------~~~~~~~---~~~~r--~~~~GIaE~~~~~~aagla~~g--g~~Pv~~~ys~F---~~ra~dqi~ 447 (663)
T 3kom_A 386 NNTNWSG--------SVWLNNT---QEGAN--YLSYGVREFGMAAIMNGLSLYG--GIKPYGGTFLVF---SDYSRNAIR 447 (663)
T ss_dssp CSCCCTT--------CCBTTTC---STTCC--EEECCSCHHHHHHHHHHHHHHS--SCEEEEEEEGGG---HHHHHHHHH
T ss_pred CCCCCCC--------CCCCCCC---CCCCC--CCHHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEHH---HHHHHHHHH
T ss_conf 6532345--------5441124---46761--1004577678899988998659--964314675028---765257776
Q ss_pred HHHHHHHCCCCCCEEECCCC--CCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 20257623336813543688--8888876564405788752143782697248899999999997435348868985660
Q gi|254781051|r 715 TAGEQKWLCTSNLVCLLPHG--YEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPK 792 (957)
Q Consensus 715 ss~e~KW~~~sglvllLPHG--yeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPK 792 (957)
-.. .+....++....-| .-..||-|-+.--.=+|..+ .||.|+.|+.+...-.+++..+.. --.|-++..|+
T Consensus 448 ~~~---~~~~~~v~~~~~~~~~~g~dG~tH~~~~di~~~r~i--p~~~v~~P~d~~e~~~~~~~~~~~-~~~p~~~~~~~ 521 (663)
T 3kom_A 448 MSA---LMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLI--PNLSVWRPADTIETMIAWKEAVKS-KDTPSVMVLTR 521 (663)
T ss_dssp HHH---HTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTS--TTCEEECCCSHHHHHHHHHHHHHC-SSCCEEEECCS
T ss_pred HHH---HCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCC--CCCEEECCCCHHHHHHHHHHHHHC-CCCCCCEEECC
T ss_conf 565---404760698304444434556677660149897347--885101788889999999999973-49984021047
Q ss_pred HHHCCCC-CCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCC--CEEEEEE
Q ss_conf 2210801-26887893799860351577643344454445795457689986885789999999976998--6899984
Q gi|254781051|r 793 SLLRHKR-VVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLRI 868 (957)
Q Consensus 793 sLLR~~~-a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~--~vaivRi 868 (957)
....... .-....++..|. .||-+. +.-+=.|+++|-.....+++.+....+ ++.+|-+
T Consensus 522 ~~~~~~~~~~~~~~~i~kG~---~~l~~~--------------~~~~v~iia~G~~v~~al~Aa~~L~~~gi~~~Vv~~ 583 (663)
T 3kom_A 522 QNLMPVVQTQHQVANIARGG---YLVKDN--------------PDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASI 583 (663)
T ss_dssp SEECCCCCCHHHHHHHTTTC---EEEECC--------------TTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCCCCCCCCCHHHHCCEE---EEEEEC--------------CCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 78887443444344305715---999988--------------999899997319999999999999865998699977