RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (957 letters)



>gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
           (E1) component, and related enzymes [Energy production
           and conversion].
          Length = 906

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 472/959 (49%), Positives = 622/959 (64%), Gaps = 63/959 (6%)

Query: 6   NKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASF 65
            K F  +S+L G N  YIE+LY+ Y +DP+SV   W   F  L +   E           
Sbjct: 1   MKQFLNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRES------FRRL 54

Query: 66  LKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNS 125
            K+ +   A     K                    V+++I+AYRS GH  AN+DPLG   
Sbjct: 55  AKKGNDPDATLKSVK--------------------VLRLINAYRSRGHLHANLDPLGLK- 93

Query: 126 HQKDLSELSPAHYGFVKADYDRKI-CMKGVLGLESATIPEIVDVLSHLYCSNIGVEFMHI 184
            + D+ EL P  +G  +AD D       G LG E+ T+ E++++L   YC +IGVE+MHI
Sbjct: 94  -RPDVPELDPEFHGLTEADLDETFNIGDGFLGKETMTLRELIEILKKTYCGSIGVEYMHI 152

Query: 185 VDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSE 244
            D  E+ W++  IE    +  F+ EE++ IL +L  AEGFE+F+  K+ GAKRF  +G E
Sbjct: 153 SDPEEKRWLQERIESGKPT--FTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGE 210

Query: 245 VIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYS 304
            +IP ++E+I +  +QGV E+++GMAHRGRLNVL  ++ K  R IF EF+GK  +E + S
Sbjct: 211 SLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGK-SAEPDLS 269

Query: 305 GDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISL 364
           GDVKYHLG   +RQ  G  V L L  NPSHLE V+PVV GSVRA+QD             
Sbjct: 270 GDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDT-------- 321

Query: 365 VERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARS 424
            ER +VLP++IHGDAAFAGQG+V+ET  LS L GY+V G  H++INNQIGFTT+P+ ARS
Sbjct: 322 -ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARS 380

Query: 425 CTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGD 484
             Y +D++K I  PIFHVN DDPEAV+    +A+ +R  F K VVID+VCYRR GHNEGD
Sbjct: 381 TPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGD 440

Query: 485 EPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYC 544
           EPS TQP+MY+ I+ H +V +LYAD L+   VIS++E   L N++   L+  ++  + Y 
Sbjct: 441 EPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500

Query: 545 P------EKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMI 598
                  +  G L+ G       V K+ LK++G  +  +P+ F  H  V++++ +R+ M 
Sbjct: 501 EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMA 560

Query: 599 ETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNI 658
           E G+GIDW MAE+LAF +L  EG+ +RLSGQD  RGTFSHRHA+L DQ+TG+ Y PL ++
Sbjct: 561 EGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHL 620

Query: 659 SKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGE 718
           SK QG  EV+NS LSE+AVLGFEYGYSL N   L +WEAQFGDFANGAQV++DQFI++GE
Sbjct: 621 SKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGE 680

Query: 719 QKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQI 778
           QKW   S LV LLPHGYEGQGPEHSSARLERFLQ+CAENNM V   ++PA YFH+LRRQ 
Sbjct: 681 QKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQA 740

Query: 779 YDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIR 838
                +PLI+M PKSLLRHK  VSSL ++T G+ FQ VL D  E           D  ++
Sbjct: 741 LRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGT-FQPVLEDIDEL----------DPKVK 789

Query: 839 RVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQ-AEIVWCQEE 897
           RV+LC+GKVYYDLL+ R+     D+ ++RIEQLYPFP   L  +L+++    E VWCQEE
Sbjct: 790 RVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEE 849

Query: 898 PQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956
           P+N GAW +I+P+LE+VL     +  ++RY GR  SAS AVG MS H +Q    +EDAL
Sbjct: 850 PKNQGAWYYIQPHLEEVL----PEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDAL 904


>gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit
            [Carbohydrate transport and metabolism].
          Length = 1017

 Score =  970 bits (2508), Expect = 0.0
 Identities = 437/992 (44%), Positives = 596/992 (60%), Gaps = 77/992 (7%)

Query: 13   SFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVA 72
             FL GT+  Y+E++Y+++ EDP+SV K W   F                 A   +     
Sbjct: 49   PFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYF-------RNVSAGAPPPAQASQAPLSR 101

Query: 73   SAVFSQKKSAVESSCSLGET-QSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKD-- 129
            SA  +  +SAV +  + G + ++V+D  +V  +I AY+  GH KA +DPLG N    D  
Sbjct: 102  SAAVAGTQSAVAARPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSS 161

Query: 130  -----LSELSPAHYGFVKADYDRKI--CMKGVLGLESATIP--EIVDVLSHLYCSNIGVE 180
                   EL+ A YGF +AD DR+        +G   +++   EI+  L   YC +IGVE
Sbjct: 162  VPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGESSLTLREILRRLEKAYCGSIGVE 221

Query: 181  FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240
            FMHI D  + +W+R   E       +S E++R ILD+L R+  FE+F+  K+   KRFG 
Sbjct: 222  FMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL 280

Query: 241  DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300
            +G EV+IPA++ II +  + GV+ +++GM HRGRLNVL+ ++ K    IF EF G   ++
Sbjct: 281  EGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAAD 340

Query: 301  KEYSGDVKYHLGLCCNR--QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVG 358
             E SGDVKYHLG+   R  ++ GK++ L L +NPSHLE VDPVV+G  RA Q        
Sbjct: 341  -EGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGD--- 396

Query: 359  EKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN 418
                   E  +V+ ++IHGDAAFAGQG+V ETF LS L  YT  G +H+++NNQIGFTT+
Sbjct: 397  ------EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTD 450

Query: 419  PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478
            P  ARS  Y +D+++ +  PIFHVN DDPEAV+ V ++A  +R  FHK VV+D+VCYRR 
Sbjct: 451  PRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH 510

Query: 479  GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538
            GHNE DEP FTQP+MYK IR HK VLQ YA+ L+    +S+QE+      +   LE  ++
Sbjct: 511  GHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFE 570

Query: 539  ESESYCPEK--------------LGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTH 584
             S+ Y P                              V +EILK IG     +P+ F  H
Sbjct: 571  RSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIH 630

Query: 585  KIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILC 644
            + ++R++ NR +MI++ +G+DW++AE+LAFGSL  EG  VRLSGQD ERGTFSHRH +L 
Sbjct: 631  RGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLH 689

Query: 645  DQETGKR-YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFA 703
            DQE  KR Y PL ++  +Q    V NS LSE  VLGFE GYS+ + NAL +WEAQFGDFA
Sbjct: 690  DQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFA 749

Query: 704  NGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN------ 757
            N AQ I+DQFI++G+ KW+  S LV LLPHGYEG GPEHSSAR ERFLQM  ++      
Sbjct: 750  NTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPD 809

Query: 758  ------------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLS 805
                        N  V NCT+PANYFH+LRRQI+    +PLI+  PKSLLRH    SS S
Sbjct: 810  EEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFS 869

Query: 806  DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA-DIY 864
            +   G+ FQ V+ +     GK +       +++R++ C+GKVYYDL   R    +  D+ 
Sbjct: 870  EFDEGTGFQRVIPE----DGKAAQN---PENVKRLVFCSGKVYYDLTKERKEVGLEGDVA 922

Query: 865  LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSR 924
            + R+EQL PFP D + + L+++  AEIVWCQEE +NMGAW ++EP L   L  +      
Sbjct: 923  ITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTALKRLA---RP 979

Query: 925  VRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956
            V+Y GRLPSA+ A G+   HL +  +F+  A 
Sbjct: 980  VKYAGRLPSAAPATGNKQTHLAEQKAFLNKAF 1011


>gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase,
           E1 subunit [Carbohydrate transport and metabolism].
          Length = 913

 Score =  752 bits (1943), Expect = 0.0
 Identities = 354/880 (40%), Positives = 520/880 (59%), Gaps = 53/880 (6%)

Query: 100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL--GL 157
            V ++++A+R +GH  A ++PL   +  ++L ELSPA YG  + D        G+L    
Sbjct: 55  NVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRTD--------GLLSGPK 106

Query: 158 ESATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDK 217
            + ++ ++  +L  +YC +  +EF ++ D  ER+W+    E  D      KEE+ +I + 
Sbjct: 107 VAHSLAQLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLD-QEQLGKEERCEIAEL 165

Query: 218 LVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV 277
           +++++ F+ F+  K+   KR+G +G+E ++    E++R   Q  ++ +I+GM HRGRLN+
Sbjct: 166 MLKSQAFDNFLATKFPTVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNL 225

Query: 278 LSQIMNKLPRSIFYEFKGKG--PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHL 335
           L+ ++N  P  +F +  G    P + E  GDV  HL    + +  GK + + +  NPSHL
Sbjct: 226 LTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHL 285

Query: 336 EFVDPVVIGSVRARQ-DLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLS 394
           E V+PV +G  R+RQ     G     S S      VL +I+HGDAAFAGQGIV E   LS
Sbjct: 286 EAVNPVAMGKTRSRQQSRGEGDYSPDS-SAPFGDHVLNVIVHGDAAFAGQGIVQECLNLS 344

Query: 395 GLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVV 454
            +  + V G++HLI+NNQ+GFTT     RS  Y SDI+KSI  P+ HVNGDDPE V+R  
Sbjct: 345 YVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRAT 404

Query: 455 RMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKN 514
           R+A  ++ +F K V ID+ C+RR+GHNE D+P+FT P+MYK + + +SV  LYA  L K 
Sbjct: 405 RLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKE 464

Query: 515 QVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERK---------NSVSKE 565
            V+++++++ + + + KYL  E   + +Y P            ++           V  +
Sbjct: 465 GVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYD 524

Query: 566 ILKKIGSSIIRLPKSFNTHKIVERLMAN-RQKMIETGKGIDWSMAESLAFGSLCYEGYKV 624
           +L+ IG   + +P+ FN H  + +   N R K +E G  IDW+ AE+LA GSL Y+G+ V
Sbjct: 525 LLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNV 584

Query: 625 RLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQ-GHCEVVNSFLSEQAVLGFEYG 683
           R+SGQD  RGTFSHRHA+L DQ+T + + PL ++   Q G  EV NS LSE+AVLGFEYG
Sbjct: 585 RISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYG 644

Query: 684 YSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHS 743
            S+ N N L IWEAQFGDF NGAQ+I+D FI +GE KWL +S LV LLPHGY+G GPEHS
Sbjct: 645 MSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHS 704

Query: 744 SARLERFLQMC--AEN-------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSL 794
           S R+ERFLQ+C   E        NM+V N T+PA YFH+LRRQ+     +PLI++APK+L
Sbjct: 705 SCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTL 764

Query: 795 LRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDN 854
           LR     S+  +   G+ F  V+ D       T  K ++   +++VI C+GK YY L   
Sbjct: 765 LRLPAATSTHEEFQPGTTFHNVIGD-------TIAKPEK---VKKVIFCSGKHYYTLAKE 814

Query: 855 RDMRNIAD-IYLLRIEQLYPFPEDYLIKVLSRFVQAE-IVWCQEEPQNMGAWTFIEPYLE 912
           R+ R   D + +LR+E L PFP   L   L+++   +  VW QEEP+NMGAW+F+ P  E
Sbjct: 815 REKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFE 874

Query: 913 KVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFI 952
            +L        ++ Y GR    + A G    H  ++   +
Sbjct: 875 NLLG------QQLHYCGRPELPTPATGIGKVHKREVEEIV 908


>gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
           of OGDC-like subfamily, TPP-binding module; composed of
           proteins similar to the E1 component of the
           2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
           OGDC catalyzes the oxidative decarboxylation of
           2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
           reaction of the tricarboxylic acid cycle..
          Length = 265

 Score =  405 bits (1042), Expect = e-113
 Identities = 156/274 (56%), Positives = 200/274 (72%), Gaps = 12/274 (4%)

Query: 224 FEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMN 283
           FE+F+  K+ G KRFG +G+E +IPA++E+I +  + GV+E+++GMAHRGRLNVL+ ++ 
Sbjct: 1   FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLG 60

Query: 284 KLPRSIFYEFKGK--GPSEKEYSGDVKYHLGLCCNRQI-CGKDVKLLLQSNPSHLEFVDP 340
           K    IF EF+GK   P + E SGDVKYHLG   +R+   GK V L L  NPSHLE V+P
Sbjct: 61  KPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNP 120

Query: 341 VVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYT 400
           VV+G  RA+QD +            ER +VLP++IHGDAAFAGQG+V ET  LS L GYT
Sbjct: 121 VVMGKTRAKQDYRGD---------GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171

Query: 401 VAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF 460
             G IH+++NNQIGFTT+P  +RS  Y +D++K IG PIFHVNGDDPEAV+R  R+A+ +
Sbjct: 172 TGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEY 231

Query: 461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMY 494
           R KF K VVID+VCYRR GHNE DEPSFTQP+MY
Sbjct: 232 RQKFKKDVVIDLVCYRRHGHNELDEPSFTQPLMY 265


>gnl|CDD|145763 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. 
           This family includes transketolase enzymes, pyruvate
           dehydrogenases, and branched chain alpha-keto acid
           decarboxylases.
          Length = 174

 Score =  180 bits (459), Expect = 2e-45
 Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 602 KGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKD 661
           K I    A   A   L     +V   G D   GTF+    +L                  
Sbjct: 1   KKIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLL----------------HP 44

Query: 662 QGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKW 721
           QG   V+++ ++EQA++G   G +L+ L  L   EA FGDFAN   +  D  I       
Sbjct: 45  QGEGRVIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN---IRADAAIRHYAALG 99

Query: 722 LCTSN-LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780
                 +V   P G    GP H S   E +L+      + V   + PA    +LR  I  
Sbjct: 100 KLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIP--GLKVVRPSDPAEAKGLLRAAIRR 157

Query: 781 RSSRPLIMMAPKSLLR 796
               P++   P+ LLR
Sbjct: 158 DDDDPVVFRLPRQLLR 173


>gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component.  This family uses
           thiamine pyrophosphate as a cofactor. This family
           includes pyruvate dehydrogenase, 2-oxoglutarate
           dehydrogenase and 2-oxoisovalerate dehydrogenase.
          Length = 303

 Score =  176 bits (448), Expect = 3e-44
 Identities = 68/328 (20%), Positives = 128/328 (39%), Gaps = 33/328 (10%)

Query: 217 KLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLN 276
           +++     E      Y+   R G         A++  I   +  G  + ++   +R   N
Sbjct: 2   RMMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAALNPG--DYVI-PTYRDHGN 58

Query: 277 VLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLE 336
           +L++ ++     +  E  G      +  G   +      N +  G        +     +
Sbjct: 59  LLARGVS--LEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGG-------NGIVGAQ 109

Query: 337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGL 396
              P+  G   A +       G+K +++          + GD A   QG   E    + L
Sbjct: 110 --VPLGAGIALAAK-----YRGKKEVAIT---------LFGDGA-TNQGQFFEALNFAAL 152

Query: 397 SGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRM 456
               V   I +  NNQ   +T    + + TY +D ++  GIP   V+G DP AV + V+ 
Sbjct: 153 WKLPV---IFVCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKF 209

Query: 457 AVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ-PMMYKTIRSHKSVLQLYADSLMKNQ 515
           A       +   +I++V YR  GH+  D+PS  +     + +R  K  ++     L+   
Sbjct: 210 AAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRG 269

Query: 516 VISKQELQSLANNWHKYLEAEYKESESY 543
           V+S++EL+ +     K +E   K++ES 
Sbjct: 270 VVSEEELKEIEKEVRKEIEEAVKKAESD 297


>gnl|CDD|48163 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
           E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
           composed of proteins similar to the E1 components of the
           human pyruvate dehydrogenase complex (PDC), the acetoin
           dehydrogenase complex (ADC) and the branched chain
           alpha-keto acid dehydrogenase/2-oxoisovalerate
           dehydrogenase complex (BCADC). PDC catalyzes the
           irreversible oxidative decarboxylation of pyruvate to
           produce acetyl-CoA in the bridging step between
           glycolysis and the citric acid cycle. ADC participates
           in the breakdown of acetoin while BCADC participates in
           the breakdown of branched chain amino acids. BCADC
           catalyzes the oxidative decarboxylation of
           4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
           3-methyl-2-oxobutanoate (branched chain 2-oxo acids
           derived from the transamination of leucine, valine and
           isoleucine)..
          Length = 293

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436
           GD A   +G   E    + L    V   I +  NN    +T  S   + T  +D + + G
Sbjct: 134 GDGA-TNEGDFHEALNFAALWKLPV---IFVCENNGYAISTPTSRQTAGTSIADRAAAYG 189

Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496
           IP   V+G+D  AV    + AV          +I+ V YR  GH+  D+PS      Y+T
Sbjct: 190 IPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS-----RYRT 244

Query: 497 -----IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE 539
                    +  +      L++  +++++EL ++       +E   + 
Sbjct: 245 KEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEF 292


>gnl|CDD|31269 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, alpha
           subunit [Energy production and conversion].
          Length = 358

 Score = 62.6 bits (152), Expect = 5e-10
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436
           GD A   QG   E    + +    V   + +I NNQ   +   S   +    +  + + G
Sbjct: 167 GDGA-TNQGDFHEALNFAAVWKLPV---VFVIENNQYAISVPRSRQTAAEIIAARAAAYG 222

Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496
           IP   V+G+D  AV    + AV          +I+ V YR  GH+  D+PS  +      
Sbjct: 223 IPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVE 282

Query: 497 IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESES 542
               +  +      L++  ++S++EL+++       ++   + +E+
Sbjct: 283 EWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEA 328


>gnl|CDD|35446 KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, alpha subunit
           [Energy production and conversion].
          Length = 394

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 373 LIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDIS 432
             ++GD A A QG V E F ++ L    V   I +  NN  G  T+   A + T   +  
Sbjct: 191 FALYGDGA-ANQGQVFEAFNMAALWKLPV---IFVCENNHYGMGTSAERASAST---EYY 243

Query: 433 KSIG-IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP 491
           K    IP   V+G D  AV    + A  + ++    +++++  YR  GH+  D  +    
Sbjct: 244 KRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGT---- 299

Query: 492 MMYKT------IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCP 545
             Y+T      +R  +  ++     L++  + +++EL+++     K ++     + +  P
Sbjct: 300 -SYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATA-SP 357

Query: 546 E 546
           E
Sbjct: 358 E 358


>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
           Reviewed.
          Length = 341

 Score = 34.1 bits (78), Expect = 0.17
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 405 IHLIINNQ--IGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRM 462
           I ++ NNQ  IG   + S++    +    +++ G+P   V+G D  AV  V + AV    
Sbjct: 189 IFVVENNQWAIGMAHHRSTSIPEIHKK--AEAFGLPGIEVDGMDVLAVREVAKEAVERAR 246

Query: 463 KFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQEL 522
           +     +I+ + YR  GH+  D P   +    K     +  ++     ++ N++ S++EL
Sbjct: 247 QGDGPTLIEALTYRFRGHSLAD-PDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKEL 305

Query: 523 QSLAN 527
             +  
Sbjct: 306 NKIQR 310


>gnl|CDD|35745 KOG0525, KOG0525, KOG0525, Branched chain alpha-keto acid
           dehydrogenase E1, beta subunit [Energy production and
           conversion].
          Length = 362

 Score = 33.5 bits (76), Expect = 0.28
 Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 15/140 (10%)

Query: 663 GHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWL 722
           G   V N+ L EQ ++GF  G  L  + A  I E QF D+   A    DQ +    +   
Sbjct: 85  GKDRVFNTPLCEQGIVGF--GIGLAAMGATAIAEIQFADYIFPA---FDQIVNEAAKFRY 139

Query: 723 CTSN------LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776
            + N      L    P G  G G  + S   E F        + +    SP     +L  
Sbjct: 140 RSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPR--SPRQAKGLLLS 197

Query: 777 QIYDRSSRPLIMMAPKSLLR 796
            I D +  P I   PK L R
Sbjct: 198 CIRDPN--PCIFFEPKILYR 215


>gnl|CDD|146905 pfam04497, Pox_E2, Poxvirus E2 protein.  This family of proteins is
           restricted to Poxviridae. It contains the proteins E2
           and O1 which are uncharacterized.
          Length = 726

 Score = 32.7 bits (75), Expect = 0.47
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 11/140 (7%)

Query: 757 NNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAV 816
            N  + + T       +L++      +  +I     ++L  +     + ++  G      
Sbjct: 192 VNDGLLSLTDIDKAIELLKKYPSSNDTIRVIDYLNDAVLSSEEFKEFVIELIVGGNLPDY 251

Query: 817 LSDDAEY-HGKTS-VKLKEDSHIRRVIL------CTGKVYYDLLDNRDMRNIA---DIYL 865
           L    +Y   +     L  +  I   I             +D L   ++  I    D Y 
Sbjct: 252 LPYANDYLSDRVPDDSLIREYGIYSNIFFDDRPDLAEYTDFDTLTKEELSFICKYIDRYD 311

Query: 866 LRIEQLYPFPEDYLIKVLSR 885
            +       P D L + L  
Sbjct: 312 AKARIFANVPRDVLTEELCM 331


>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate
           (PLP)-Dependent Enzyme Y4yA.  This subfamily is composed
           of the hypothetical Rhizobium sp. protein Y4yA and
           similar uncharacterized bacterial proteins. These
           proteins are homologous to eukaryotic ornithine
           decarboxylase (ODC) and diaminopimelate decarboxylase
           (DapDC). ODC and DapDC are fold type III PLP-dependent
           enzymes that contain an N-terminal PLP-binding
           TIM-barrel domain and a C-terminal beta-sandwich domain,
           similar to bacterial alanine racemases. ODC participates
           in the formation of putrescine by catalyzing the
           decarboxylation of ornithine, the first step in
           polyamine biosynthesis. DapDC participates in the last
           step of lysine biosynthesis, the conversion of
           meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
           this subfamily may function as PLP-dependent
           decarboxylases.
          Length = 423

 Score = 32.6 bits (75), Expect = 0.55
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 92  TQSVKDFFQVMKMIDAYRSYGHFKANID-----PLGYNSHQKD----LSELSPAHYG 139
            Q V    + + +ID  R+ G     ID     P+ Y +   +    L+ L+ A YG
Sbjct: 182 AQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALYG 238


>gnl|CDD|31018 COG0674, PorA, Pyruvate:ferredoxin oxidoreductase and related
           2-oxoacid:ferredoxin oxidoreductases, alpha subunit
           [Energy production and conversion].
          Length = 365

 Score = 31.5 bits (71), Expect = 1.1
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 839 RVILCTGKVYYDLLDNRDMRNIADIY---LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQ 895
            VI+  G       +              LL++  L PFP + + +VL +     ++   
Sbjct: 259 IVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVL--- 315

Query: 896 EEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGR 930
                +      EP   +VL +     SR +  GR
Sbjct: 316 --DVEISLGGLAEPLYLEVL-AALYVESRYKLGGR 347


>gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related
           nucleotide-binding proteins [Signal transduction
           mechanisms].
          Length = 154

 Score = 30.7 bits (68), Expect = 2.1
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 179 VEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRF 238
           +  + ++D +E   + +            +E + +  + L  A+            A+  
Sbjct: 37  LILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAK----------ALAEAA 86

Query: 239 GADGSEVII----PAIEEIIRQGVQQGVDEMILGMAHRGRL------NVLSQIMNKLP 286
           G    E  +    P+ EEI+    ++  D +++G   R  L      +V  +++   P
Sbjct: 87  GVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAP 144


>gnl|CDD|29949 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
           aldolases (FSA) found in bacteria and archaea, which are
           member of the MipB/TalC subfamily of class I aldolases.
           FSA catalyze an aldol cleavage of fructose 6-phosphate
           and do not utilize fructose, fructose 1-phosphate,
           fructose 1,6-phosphate, or dihydroxyacetone phosphate.
           The enzymes belong to the transaldolase family that
           serves in transfer reactions in the pentose phosphate
           cycle, and are more distantly related to fructose
           1,6-bisphosphate aldolase..
          Length = 211

 Score = 30.5 bits (69), Expect = 2.2
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 414 GFTTNPS----SARSCTYA--SDISKSIGIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHK 466
           G TTNPS    S R    A   +I + I  P+   V   D E ++   R           
Sbjct: 23  GVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLA----SLGG 78

Query: 467 SVVIDI 472
           +VV+ I
Sbjct: 79  NVVVKI 84


>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
           [Amino acid transport and metabolism].
          Length = 856

 Score = 30.3 bits (68), Expect = 2.4
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 80  KSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSE 132
           K   E+ C++    S + FF +   I         K  +   G N   KD+++
Sbjct: 564 KGGYEADCTVSR-LSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTD 615


>gnl|CDD|133345 cd04145, M_R_Ras_like, M-Ras/R-Ras-like subfamily.  This subfamily
           contains R-Ras2/TC21, M-Ras/R-Ras3, and related members
           of the Ras family. M-Ras is expressed in
           lympho-hematopoetic cells.  It interacts with some of
           the known Ras effectors, but appears to also have its
           own effectors.  Expression of mutated M-Ras leads to
           transformation of several types of cell lines, including
           hematopoietic cells, mammary epithelial cells, and
           fibroblasts.  Overexpression of M-Ras is observed in
           carcinomas from breast, uterus, thyroid, stomach, colon,
           kidney, lung, and rectum.  In addition, expression of a
           constitutively active M-Ras mutant in murine bone marrow
           induces a malignant mast cell leukemia that is distinct
           from the monocytic leukemia induced by H-Ras.  TC21,
           along with H-Ras, has been shown to regulate the
           branching morphogenesis of ureteric bud cell branching
           in mice.  Most Ras proteins contain a lipid modification
           site at the C-terminus, with a typical sequence motif
           CaaX, where a = an aliphatic amino acid and X = any
           amino acid.  Lipid binding is essential for membrane
           attachment, a key feature of most Ras proteins.  Due to
           the presence of truncated sequences in this CD, the
           lipid modification site is not available for annotation.
          Length = 164

 Score = 30.5 bits (69), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 771 FHILRRQIYDRSSRPLIMMAPKSLLRHKRVVS 802
           FH    ++ DR   P+I++  K+ L H+R VS
Sbjct: 95  FHTQILRVKDRDEFPMILVGNKADLEHQRKVS 126


>gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 486

 Score = 30.1 bits (67), Expect = 2.8
 Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 7/166 (4%)

Query: 792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDL 851
           K    H R  +        +   A L D  E   +    LK D+     +   G   Y  
Sbjct: 157 KLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-Y 215

Query: 852 LDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYL 911
            DN D         LR++     P+    K  S   +   V  +          + + Y 
Sbjct: 216 NDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY- 269

Query: 912 EKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK 957
           E    ++  D S  +   +L      V      L +  S   +ALK
Sbjct: 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315


>gnl|CDD|30096 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
           subgroup, involved in chromosome movement and/or spindle
           elongation during mitosis. This catalytic (head) domain
           has ATPase activity and belongs to the larger group of
           P-loop NTPases. Kinesins are microtubule-dependent
           molecular motors that play important roles in
           intracellular transport and in cell division. In most
           kinesins, the motor domain is found at the N-terminus
           (N-type). N-type kinesins are (+) end-directed motors,
           i.e. they transport cargo towards the (+) end of the
           microtubule. Kinesin motor domains hydrolyze ATP at a
           rate of about 80 per second, and move along the
           microtubule at a speed of about 6400 Angstroms per
           second. To achieve that, kinesin head groups work in
           pairs. Upon replacing ADP with ATP, a kinesin motor
           domain increases its affinity for microtubule binding
           and locks in place. Also, the neck linker binds to the
           motor domain, which repositions the other head domain
           through the coiled-coil domain close to a second tubulin
           dimer, about 80 Angstroms along the microtubule.
           Meanwhile, ATP hydrolysis takes place, and when the
           second head domain binds to the microtubule, the first
           domain again replaces ADP with ATP, triggering a
           conformational change that pulls the first domain
           forward..
          Length = 321

 Score = 30.3 bits (68), Expect = 3.0
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVL-------SDDAEYHGKTSVKLK 832
           +RSSR        ++ +         D   G+V  + L       S+ A   G    + K
Sbjct: 191 ERSSRS------HTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRK 243

Query: 833 EDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLRIEQ 870
           E S I + +L  G V   L + ++  +I   D  L RI Q
Sbjct: 244 EGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQ 283


>gnl|CDD|34786 COG5187, RPN7, 26S proteasome regulatory complex component,
           contains PCI domain [Posttranslational modification,
           protein turnover, chaperones].
          Length = 412

 Score = 29.6 bits (66), Expect = 4.0
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 520 QELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILK----KIGSSII 575
           +E +   N   +  EA+   +E YC  ++  + NG    +  +   +       +    I
Sbjct: 103 REKEED-NGETEGSEADRNIAEYYC--QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKI 159

Query: 576 RLPKSFNTHKIVERLMANRQKMIETGKGIDW 606
           RL   +   K+VE  +     +IE  KG DW
Sbjct: 160 RLGLIYGDRKVVEESLEVADDIIE--KGGDW 188


>gnl|CDD|80364 cd04821, PA_M28_1_2, PA_M28_1_2: Protease-associated (PA) domain,
           peptidase family M28, subfamily-1, subgroup 2. A
           subgroup of PA-domain containing proteins belonging to
           the peptidase family M28. Family M28 contains
           aminopeptidases and carboxypeptidases, and has
           co-catalytic zinc ions. The PA domain is an insert
           domain in a diverse fraction of proteases. The
           significance of the PA domain to many of the proteins in
           which it is inserted is undetermined. It may be a
           protein-protein interaction domain. At peptidase active
           sites, the PA domain may participate in substrate
           binding and/or promoting conformational changes, which
           influence the stability and accessibility of the site to
           substrate. Proteins into which the PA domain is inserted
           include the following members of the peptidase family
           M28: i) prostate-specific membrane antigen (PSMA), ii)
           yeast aminopeptidase Y, and ii) human TfR (transferrin
           receptor)1 and human TfR2. The proteins listed above
           belong to other subgroups; relatively little is known
           about proteins in this subgroup..
          Length = 157

 Score = 29.5 bits (66), Expect = 5.0
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSS---ARSCTY 427
           +      F G GIV+  +G     G  V G   +I+ N  GF T  S     ++ TY
Sbjct: 21  LKDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTY 77


>gnl|CDD|39417 KOG4216, KOG4216, KOG4216, Steroid hormone nuclear receptor
           [Transcription].
          Length = 479

 Score = 28.9 bits (64), Expect = 7.5
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 173 YCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKY 232
           YCS    E    V   E D +   I      + +  EE   I  +    E  E +   + 
Sbjct: 221 YCSFTNGETSPTVSMAELDHLAQNIIKSHLETQYLLEELHQITWQTFDQEEIENY---QN 277

Query: 233 KGAKRFGADGSEVIIPAIEEII 254
           KG +      +  + PAI+ ++
Sbjct: 278 KGREEMWELCAIKLTPAIQYVV 299


>gnl|CDD|58605 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the
           microbial/chloroplast uridine monophosphate kinase
           (uridylate kinase) enzyme that catalyzes UMP
           phosphorylation and plays a key role in pyrimidine
           nucleotide biosynthesis. Regulation of this process is
           via feed-back control and via gene repression of
           carbamoyl phosphate synthetase (the first enzyme of the
           pyrimidine biosynthesis pathway). The UMP kinases of E.
           coli (Ec) and Pyrococcus furiosus (Pf) are known to
           function as homohexamers, with GTP and UTP being
           allosteric effectors. Like other related enzymes
           (carbamate kinase, aspartokinase, and N-acetylglutamate
           kinase) the E. coli and most bacterial UMPKs have a
           conserved, N-terminal, lysine residue proposed to
           function in the catalysis of the phosphoryl group
           transfer, whereas most archaeal UMPKs appear to lack
           this residue and the Pyrococcus furiosus structure has
           an additional Mg ion bound to the ATP molecule which is
           proposed to function as the catalysis instead. Also
           included in this CD are the alpha and beta subunits of
           the Mo storage protein (MosA and MosB) characterized as
           an alpha4-beta4 octamer containing an ATP-dependent,
           polynuclear molybdenum-oxide cluster. These and related 
           sequences in this CD are members of the Amino Acid
           Kinase Superfamily (AAK)..
          Length = 229

 Score = 28.6 bits (64), Expect = 9.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 428 ASDISKSIGIPIFHVNGDDPEAVIRVVR 455
           A  + +   IPI   NG  P  ++R ++
Sbjct: 193 ALTLCRRNKIPIIVFNGLKPGNLLRALK 220


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,622,261
Number of extensions: 632709
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 34
Length of query: 957
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 854
Effective length of database: 4,038,010
Effective search space: 3448460540
Effective search space used: 3448460540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)