HHsearch alignment for GI: 254781052 and conserved domain: TIGR00998
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=92.31 E-value=0.2 Score=28.91 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=31.3
Q ss_pred EEEEC-CCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 56667-878789999707888855177118998345
Q gi|254781052|r 64 VEVPS-PVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 64 ~eves-p~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
T Consensus 43 ~~v~sF~VsG~v~~v~~~d~d~Vk~GD~Lv~LD~t~ 78 (379)
T TIGR00998 43 LQVSSFQVSGSVIEVNVDDTDYVKQGDVLVRLDPTD 78 (379)
T ss_pred EEEEEEEEEEEEEEEEECCCCCCEECCEEEEECCCH
T ss_conf 023246573248999743788420311566767716