HHsearch alignment for GI: 254781052 and conserved domain: TIGR01349

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=100.00  E-value=0  Score=861.00  Aligned_cols=413  Identities=29%  Similarity=0.482  Sum_probs=352.4

Q ss_pred             EEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEECCCEEEEEECCCC
Q ss_conf             777688788700799999982688783489749999527624566678787899997078888-5517711899834554
Q gi|254781052|r   22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDT-VTYGGFLGYIVEIARD  100 (436)
Q Consensus        22 ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~-v~VG~~i~~i~~~~~~  100 (436)
T Consensus         1 ~i~MPaLSPTM~~Gnla~W~KKeGDkv~~GDViaEIETDKAtm~~e~~~eGyLAKILv~eGTkdvpvn~pIAV~v~~~eD   80 (584)
T TIGR01349         1 KITMPALSPTMTEGNLAKWLKKEGDKVKPGDVIAEIETDKATMEFEAQEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (584)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCH
T ss_conf             98888887154656210244113777168876988745842674576268578888652478576358616896068011


Q ss_pred             CCCHH----------------HHHCCCCCCC-------------------------------------------------
Q ss_conf             31001----------------1000112222-------------------------------------------------
Q gi|254781052|r  101 EDESI----------------KQNSPNSTAN-------------------------------------------------  115 (436)
Q Consensus       101 ~~~~~----------------~~~~~~~~~~-------------------------------------------------  115 (436)
T Consensus        81 ~~~a~~~~~~~~~a~~TP~~~pAp~P~~~a~PPtPsa~~~~~~YP~H~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~  160 (584)
T TIGR01349        81 VADAFKDYKLEDSASSTPVAEPAPKPKEKAPPPTPSAKKSTKSYPAHKVVLLPALSPSMETGTVARWEKKVGDKLKEGDL  160 (584)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
T ss_conf             88998088700104788877787787223765586445778888864323245657655667400001345762233752


Q ss_pred             ----------------------------------------------------------------------CCC-------
Q ss_conf             ----------------------------------------------------------------------222-------
Q gi|254781052|r  116 ----------------------------------------------------------------------GLP-------  118 (436)
Q Consensus       116 ----------------------------------------------------------------------~~~-------  118 (436)
T Consensus       161 ~AE~ETDKAT~~F~~~~~GYLAKILVP~GT~~~~~~~P~CIIV~~~~D~~~FADY~~~E~~~~~~q~~~~~~~~~s~~~~  240 (584)
T TIGR01349       161 LAEVETDKATIDFEVEDEGYLAKILVPEGTRDVQLNTPLCIIVKKKEDIDKFADYRVEEVSDLKSQTAPPSAPHYSKKSP  240 (584)
T ss_pred             EEEEECCCEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             55542252022214635761899872888756637886489972600123442776311024667788777787677756


Q ss_pred             ---------------CCCCCCC-CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             ---------------2111111-111122221111111122011100123211222100001110123322221233333
Q gi|254781052|r  119 ---------------EITDQGF-QMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKK  182 (436)
Q Consensus       119 ---------------~~~~~~~-~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~~~~~~~~~~~~~~~  182 (436)
T Consensus       241 a~~~~~~~~~~~~~~~~~~~~~GriFAsPLAk~LA~ekgidL~~v~GsGP~GRI~K~Die~~~p~~aakPaG~~~~a~~~  320 (584)
T TIGR01349       241 APAEQAPEPSSPAPLSDKESKDGRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPKSAAKPAGKPASANEA  320 (584)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf             77654678887766655668888178276898888753972212224086784774311026875431666541333111


Q ss_pred             CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             33334454---445544566555556531012331000000000121100122232222233211343454444320023
Q gi|254781052|r  183 GVFSRIIN---SASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKH  259 (436)
Q Consensus       183 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~  259 (436)
T Consensus       321 ~~~a~tp~~~tssttA~~~~~~~~tg~Y~d~P~sniRk~IA~RL~eSKq~iPHyYvs~~~~~~~LL~LR~~LNa~~~~~~  400 (584)
T TIGR01349       321 AAAAKTPAAKTSSTTAAKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSVECNVDKLLKLRKELNAMAEEDD  400 (584)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf             20366775323322235677888886446678883268999999887568860799998861068999999984467888


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf             ---111243210122221011468654312356--833573036654157716872111351343259899999876531
Q gi|254781052|r  260 ---GIKLGFMGFFTKAASHVLQEIKGVNAEIDG--DHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLG  334 (436)
Q Consensus       260 ---g~klt~~~~likA~a~Al~~~P~lNa~~~~--~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~  334 (436)
T Consensus       401 GkP~~KlSVND~iikA~a~Al~~vP~aN~~W~~~~~~Ir~y~~vDiSVAVatP~GliTPIVr~a~~Kgl~~IS~e~K~L~  480 (584)
T TIGR01349       401 GKPRYKLSVNDFIIKASALALREVPEANSSWTDVDDVIRRYKNVDISVAVATPDGLITPIVRNADAKGLSEISNEVKDLA  480 (584)
T ss_pred             CCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECEEEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf             88505666000799999999872990253534777606861201488776568882545072157246789999999999


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCC-CCCEECCCCCCCCEEEEEECCCEEEEEEECCE---EEEEEEEEEEEEEEEEEE
Q ss_conf             01222235720025840888615232-62101120158870789843513567888895---789548899997310114
Q gi|254781052|r  335 REARAGHLSMRDLQNGTFTISNGGVY-GSLLSSPILNPPQSGILGMHKIQERPIVEDGQ---IVIRPMMYLALSYDHRIV  410 (436)
Q Consensus       335 ~~ar~~~l~~~el~ggt~tiSNlG~~-G~~~~~piI~ppq~aIl~vg~i~~~~v~~~g~---~~~~~~~~ltls~DHRvi  410 (436)
T Consensus       481 ~rAr~~KL~P~EfqGGTftISNLGM~nGik~F~AIiNPPQA~ILAvG~~~~~~vv~n~~e~G~~~a~~m~vTLS~DHRVi  560 (584)
T TIGR01349       481 KRARENKLKPEEFQGGTFTISNLGMFNGIKDFTAIINPPQACILAVGASEDRAVVDNKEEKGFEVASIMSVTLSCDHRVI  560 (584)
T ss_pred             HHHHHCCCCCEEECCCCEEEECCCCCCHHHCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCEEECCEEEEEECCCCCEE
T ss_conf             99864378832454887567123114311143021173256440221323332003778898135675668304266333


Q ss_pred             EHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             028899999999999709898873
Q gi|254781052|r  411 DGKEAVTFLVRLKELLEDPERFIL  434 (436)
Q Consensus       411 dGa~aa~Fl~~l~~~le~P~~ll~  434 (436)
T Consensus       561 DGA~gA~fl~~fk~~~EnP~~mLL  584 (584)
T TIGR01349       561 DGAVGAEFLKEFKKYLENPLEMLL  584 (584)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             324789999998788632687709