Query gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 436
No_of_seqs 147 out of 6009
Neff 7.6
Searched_HMMs 23785
Date Wed Jun 1 01:56:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781052.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 0 0 859.1 0.3 405 19-435 1-427 (428)
2 1scz_A E2, dihydrolipoamide su 100.0 0 0 540.9 13.9 232 205-436 2-233 (233)
3 1dpb_A Dihydrolipoyl-transacet 100.0 0 0 530.8 14.9 234 200-434 8-243 (243)
4 3mae_A 2-oxoisovalerate dehydr 100.0 0 0 523.4 11.1 233 203-435 14-249 (256)
5 2ii3_A Lipoamide acyltransfera 100.0 0 0 516.6 14.7 230 205-436 29-261 (262)
6 3b8k_A PDCE2;, dihydrolipoylly 100.0 0 0 511.8 9.7 228 205-434 10-239 (239)
7 3l60_A Branched-chain alpha-ke 100.0 0 0 496.5 15.0 226 206-436 13-242 (250)
8 3cla_A Type III chloramphenico 100.0 5.8E-42 0 295.3 12.7 202 209-430 5-212 (213)
9 1q23_A Chloramphenicol acetylt 100.0 1.9E-41 1.4E-45 291.9 11.0 206 207-429 8-215 (219)
10 2i9d_A Chloramphenicol acetylt 100.0 9.9E-40 4.2E-44 280.5 11.6 193 215-427 14-217 (217)
11 1zy8_K Pyruvate dehydrogenase 100.0 1.5E-41 0 292.5 -1.1 153 19-171 2-173 (229)
12 1y8o_B Dihydrolipoyllysine-res 99.9 1.6E-25 6.8E-30 186.6 10.9 81 21-101 28-109 (128)
13 2dne_A Dihydrolipoyllysine-res 99.9 1.2E-25 5.2E-30 187.4 8.7 83 18-100 5-88 (108)
14 3crk_C Dihydrolipoyllysine-res 99.9 1.8E-23 7.5E-28 173.1 10.5 81 20-100 5-86 (87)
15 2dnc_A Pyruvate dehydrogenase 99.9 2E-23 8.6E-28 172.7 9.6 84 18-101 5-89 (98)
16 1ghj_A E2, E2, the dihydrolipo 99.9 9.7E-23 4.1E-27 168.3 8.0 78 20-97 1-78 (79)
17 1k8m_A E2 component of branche 99.9 2.6E-21 1.1E-25 158.8 9.6 79 20-98 4-82 (93)
18 1pmr_A Dihydrolipoyl succinylt 99.8 6E-23 2.5E-27 169.6 -0.9 77 20-96 2-78 (80)
19 1qjo_A Dihydrolipoamide acetyl 99.8 7.7E-20 3.2E-24 149.1 8.5 76 19-96 1-76 (80)
20 1gjx_A Pyruvate dehydrogenase; 99.8 1.7E-19 7.2E-24 146.8 5.0 76 21-97 3-78 (81)
21 1iyu_A E2P, dihydrolipoamide a 99.7 4.7E-17 2E-21 130.7 10.8 74 21-97 2-75 (79)
22 2k7v_A Dihydrolipoyllysine-res 99.7 7.3E-18 3.1E-22 136.0 1.0 74 19-98 1-74 (85)
23 2ejm_A Methylcrotonoyl-COA car 99.6 9.7E-16 4.1E-20 122.0 7.8 64 35-98 23-86 (99)
24 2dn8_A Acetyl-COA carboxylase 99.6 5.4E-15 2.3E-19 117.1 7.3 72 23-95 14-85 (100)
25 1z6h_A Biotin/lipoyl attachmen 99.5 1.9E-14 8.1E-19 113.4 7.8 64 35-98 8-71 (72)
26 2d5d_A Methylmalonyl-COA decar 99.5 3.5E-14 1.5E-18 111.7 8.3 60 35-94 14-73 (74)
27 2kcc_A Acetyl-COA carboxylase 99.5 4.9E-14 2E-18 110.8 5.9 63 33-96 12-74 (84)
28 1dcz_A Transcarboxylase 1.3S s 99.5 1.4E-13 5.7E-18 107.8 7.4 67 22-94 10-76 (77)
29 2jku_A Propionyl-COA carboxyla 99.4 4.5E-14 1.9E-18 111.0 2.2 74 22-95 17-94 (94)
30 3n6r_A Propionyl-COA carboxyla 99.2 7.4E-11 3.1E-15 89.7 8.3 15 215-229 415-429 (681)
31 3hbl_A Pyruvate carboxylase; T 99.1 1.2E-10 5.1E-15 88.4 8.2 15 81-95 221-235 (1150)
32 1bdo_A Acetyl-COA carboxylase; 99.1 5.4E-11 2.3E-15 90.7 5.9 57 39-95 24-80 (80)
33 2qf7_A Pyruvate carboxylase pr 99.0 2.1E-10 8.7E-15 86.8 5.2 13 82-94 238-250 (1165)
34 2coo_A Lipoamide acyltransfera 98.9 2.2E-10 9.4E-15 86.6 0.5 50 121-170 10-59 (70)
35 1w4i_A Pyruvate dehydrogenase 98.8 3.7E-10 1.5E-14 85.2 -0.0 45 125-169 3-47 (62)
36 1zwv_A Lipoamide acyltransfera 98.8 5.3E-10 2.2E-14 84.1 -0.3 47 123-169 4-50 (58)
37 1w85_I Dihydrolipoyllysine-res 98.8 5.4E-10 2.2E-14 84.1 -0.4 46 123-168 3-48 (49)
38 1bal_A Dihydrolipoamide succin 98.7 1.4E-09 5.8E-14 81.4 0.7 45 123-167 6-50 (51)
39 2f60_K Pyruvate dehydrogenase 98.7 7.3E-10 3.1E-14 83.2 -1.0 48 122-169 5-52 (64)
40 2eq9_C Pyruvate dehydrogenase 98.7 1.3E-09 5.3E-14 81.6 -0.2 40 127-166 1-40 (41)
41 2eq7_C 2-oxoglutarate dehydrog 98.7 1.6E-09 6.8E-14 80.9 -0.6 38 129-166 2-39 (40)
42 2eq8_C Pyruvate dehydrogenase 98.7 1.7E-09 7.3E-14 80.7 -0.6 38 128-165 1-38 (40)
43 2k32_A A; NMR {Campylobacter j 98.2 3E-06 1.3E-10 59.3 6.6 63 34-96 9-101 (116)
44 1hpc_A H protein of the glycin 97.4 0.00016 6.9E-09 47.8 5.2 45 34-79 37-81 (131)
45 1onl_A Glycine cleavage system 97.4 0.0002 8.6E-09 47.2 5.4 44 35-79 38-81 (128)
46 3lnn_A Membrane fusion protein 97.4 0.00058 2.4E-08 44.2 7.5 45 52-96 45-90 (359)
47 1zko_A Glycine cleavage system 97.4 0.00023 9.9E-09 46.8 5.3 46 34-80 46-91 (136)
48 3mxu_A Glycine cleavage system 97.4 0.00024 1E-08 46.7 5.3 46 34-80 55-100 (143)
49 3hgb_A Glycine cleavage system 97.3 0.00026 1.1E-08 46.5 5.3 45 35-80 61-105 (155)
50 3klr_A Glycine cleavage system 97.3 0.00027 1.1E-08 46.4 5.3 46 34-80 33-78 (125)
51 3a7l_A H-protein, glycine clea 97.3 0.0003 1.2E-08 46.1 5.3 46 34-80 38-83 (128)
52 3cdx_A Succinylglutamatedesucc 97.2 0.0014 5.8E-08 41.7 7.5 14 141-154 111-124 (354)
53 3h9i_A Cation efflux system pr 97.1 0.00015 6.4E-09 48.0 1.8 55 42-96 99-155 (407)
54 1k8m_A E2 component of branche 96.5 0.0034 1.4E-07 39.1 5.2 25 71-95 18-42 (93)
55 1dcz_A Transcarboxylase 1.3S s 95.7 0.011 4.4E-07 35.9 4.4 35 62-96 7-41 (77)
56 1iyu_A E2P, dihydrolipoamide a 95.5 0.014 5.9E-07 35.1 4.6 26 70-95 11-36 (79)
57 1bdo_A Acetyl-COA carboxylase; 95.4 0.012 5.2E-07 35.4 4.0 25 34-58 56-80 (80)
58 2f1m_A Acriflavine resistance 95.2 0.0085 3.6E-07 36.5 2.5 35 62-96 21-55 (277)
59 2kcc_A Acetyl-COA carboxylase 95.2 0.011 4.6E-07 35.8 3.0 37 58-96 2-38 (84)
60 2ejm_A Methylcrotonoyl-COA car 95.1 0.013 5.3E-07 35.4 3.1 38 59-96 10-47 (99)
61 1z6h_A Biotin/lipoyl attachmen 95.0 0.022 9.4E-07 33.7 4.2 31 66-96 2-32 (72)
62 2d5d_A Methylmalonyl-COA decar 94.9 0.024 9.9E-07 33.6 4.2 34 64-97 6-39 (74)
63 2k7v_A Dihydrolipoyllysine-res 94.9 0.011 4.8E-07 35.7 2.6 28 34-61 47-74 (85)
64 2dn8_A Acetyl-COA carboxylase 94.7 0.018 7.6E-07 34.3 3.2 45 50-96 6-50 (100)
65 1vf7_A Multidrug resistance pr 94.6 0.014 5.8E-07 35.1 2.3 40 56-96 37-76 (369)
66 1qjo_A Dihydrolipoamide acetyl 94.6 0.017 7E-07 34.6 2.7 25 71-95 14-38 (80)
67 3fpp_A Macrolide-specific effl 94.5 0.026 1.1E-06 33.3 3.6 42 54-96 23-64 (341)
68 3fpp_A Macrolide-specific effl 94.1 0.053 2.2E-06 31.3 4.5 30 33-62 38-67 (341)
69 2auk_A DNA-directed RNA polyme 94.1 0.096 4E-06 29.6 5.7 26 66-94 56-81 (190)
70 2qf7_A Pyruvate carboxylase pr 93.9 0.019 7.8E-07 34.2 1.8 28 42-69 235-264 (1165)
71 3hbl_A Pyruvate carboxylase; T 93.9 0.051 2.2E-06 31.3 4.1 14 45-58 222-235 (1150)
72 2jku_A Propionyl-COA carboxyla 93.8 0.031 1.3E-06 32.8 2.8 32 65-96 27-58 (94)
73 2f1m_A Acriflavine resistance 93.8 0.045 1.9E-06 31.7 3.6 27 34-60 30-56 (277)
74 1ghj_A E2, E2, the dihydrolipo 93.8 0.054 2.3E-06 31.2 3.9 26 70-95 14-39 (79)
75 3lnn_A Membrane fusion protein 93.1 0.078 3.3E-06 30.1 3.9 28 33-60 64-91 (359)
76 2k32_A A; NMR {Campylobacter j 92.8 0.093 3.9E-06 29.6 3.9 33 64-96 2-34 (116)
77 3n6r_A Propionyl-COA carboxyla 92.3 0.12 5.2E-06 28.8 4.0 13 149-161 332-344 (681)
78 1gjx_A Pyruvate dehydrogenase; 92.3 0.032 1.3E-06 32.7 0.9 28 69-96 13-40 (81)
79 3bg3_A Pyruvate carboxylase, m 92.2 0.085 3.6E-06 29.9 3.0 31 65-95 651-681 (718)
80 1vf7_A Multidrug resistance pr 91.5 0.11 4.5E-06 29.2 3.0 27 34-60 51-77 (369)
81 2dnc_A Pyruvate dehydrogenase 91.5 0.087 3.7E-06 29.8 2.5 27 70-96 20-46 (98)
82 2dne_A Dihydrolipoyllysine-res 90.6 0.11 4.5E-06 29.2 2.3 28 69-96 19-46 (108)
83 1y8o_B Dihydrolipoyllysine-res 90.5 0.14 6E-06 28.4 2.8 29 68-96 38-66 (128)
84 3crk_C Dihydrolipoyllysine-res 90.3 0.15 6.3E-06 28.2 2.8 28 70-97 18-45 (87)
85 3dva_I Dihydrolipoyllysine-res 90.3 0.043 1.8E-06 31.9 0.0 30 68-97 13-42 (428)
86 2gpr_A Glucose-permease IIA co 90.1 0.26 1.1E-05 26.6 3.9 30 64-94 8-41 (154)
87 1ax3_A Iiaglc, glucose permeas 88.6 0.48 2E-05 24.9 4.3 29 65-94 14-46 (162)
88 1zy8_K Pyruvate dehydrogenase 87.9 0.08 3.4E-06 30.1 0.0 31 67-97 13-43 (229)
89 3paj_A Nicotinate-nucleotide p 87.2 0.35 1.5E-05 25.8 3.0 25 73-97 108-132 (320)
90 3d4r_A Domain of unknown funct 86.5 0.9 3.8E-05 23.1 4.7 41 35-75 109-150 (169)
91 1pmr_A Dihydrolipoyl succinylt 85.4 0.075 3.1E-06 30.3 -1.3 28 69-96 14-41 (80)
92 1qpo_A Quinolinate acid phosph 84.5 0.78 3.3E-05 23.6 3.6 27 71-97 69-95 (284)
93 2jbm_A Nicotinate-nucleotide p 84.1 0.55 2.3E-05 24.6 2.7 75 318-418 223-298 (299)
94 1f3z_A EIIA-GLC, glucose-speci 84.1 0.55 2.3E-05 24.5 2.7 34 61-95 10-47 (161)
95 1x1o_A Nicotinate-nucleotide p 83.9 0.64 2.7E-05 24.1 3.0 23 75-97 74-96 (286)
96 2b7n_A Probable nicotinate-nuc 83.3 0.94 3.9E-05 23.0 3.6 22 76-97 61-82 (273)
97 3gnn_A Nicotinate-nucleotide p 82.8 0.76 3.2E-05 23.6 3.0 26 72-97 85-110 (298)
98 1qap_A Quinolinic acid phospho 82.3 0.83 3.5E-05 23.4 3.0 21 76-96 88-108 (296)
99 2bgh_A Vinorine synthase; VS, 82.0 1.2 5.1E-05 22.3 3.8 50 315-364 302-363 (421)
100 1o4u_A Type II quinolic acid p 81.2 0.81 3.4E-05 23.4 2.6 51 39-98 46-96 (285)
101 2rkv_A Trichothecene 3-O-acety 81.0 1.4 5.8E-05 21.9 3.8 50 316-365 320-391 (451)
102 3l0g_A Nicotinate-nucleotide p 79.4 1.3 5.3E-05 22.1 3.2 25 73-97 84-108 (300)
103 2e1v_A Acyl transferase; BAHD 68.7 4.7 0.0002 18.4 3.9 18 411-428 435-452 (454)
104 1q9j_A PAPA5, polyketide synth 63.9 5.3 0.00022 18.0 3.4 19 262-280 234-252 (422)
105 3c2e_A Nicotinate-nucleotide p 62.9 3.6 0.00015 19.1 2.3 22 75-96 69-96 (294)
106 2hsi_A Putative peptidase M23; 59.2 4.4 0.00018 18.6 2.2 15 296-310 177-191 (282)
107 2gu1_A Zinc peptidase; alpha/b 58.7 4.6 0.00019 18.4 2.3 19 407-425 333-351 (361)
108 1qwy_A Peptidoglycan hydrolase 53.4 6.4 0.00027 17.5 2.3 11 299-309 185-195 (291)
109 2i14_A Nicotinate-nucleotide p 45.4 9.3 0.00039 16.4 2.1 21 77-97 80-100 (395)
110 1q90_A Apocytochrome F; membra 39.9 5 0.00021 18.2 0.0 12 16-27 26-37 (292)
111 3it5_A Protease LASA; metallop 35.2 15 0.00062 15.1 1.8 22 74-95 82-103 (182)
112 3csq_A Morphogenesis protein 1 33.4 15 0.00065 15.0 1.7 10 138-147 44-53 (334)
113 2jgp_A Tyrocidine synthetase 3 33.3 19 0.00081 14.3 3.0 160 262-436 326-517 (520)
114 3nyy_A Putative glycyl-glycine 31.4 19 0.0008 14.4 1.9 23 297-319 123-147 (252)
115 3fot_A 15-O-acetyltransferase; 30.5 21 0.0009 14.0 3.7 32 398-429 486-517 (519)
116 1l5a_A Amide synthase, VIBH; n 28.7 23 0.00096 13.8 2.5 37 399-435 374-414 (436)
117 1xho_A Chorismate mutase; sout 27.8 24 0.001 13.7 2.8 49 308-356 28-80 (148)
118 3iav_A Propionyl-COA carboxyla 25.7 26 0.0011 13.5 3.7 10 68-77 82-91 (530)
119 1vf5_C Cytochrome F; photosynt 23.0 11 0.00046 16.0 -0.6 25 66-91 50-76 (289)
120 2bzr_A Propionyl-COA carboxyla 22.6 30 0.0012 13.1 3.3 22 405-426 510-531 (548)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=0 Score=859.11 Aligned_cols=405 Identities=33% Similarity=0.563 Sum_probs=350.5
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 84277768878870079999998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 19 M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
|++||+||+||+||+||+|++|||++||+|++||+||||||||++||||||++|+|.+|++++||+|+||++||+|++.+
T Consensus 1 M~~ei~mP~lg~~~~eg~i~~W~~~~Gd~V~~gd~l~evETDKa~~ev~s~~~G~l~~i~~~~G~~v~vG~~i~~i~~~~ 80 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEECCCCCCCCEEEEEEEEEECCCCEECCCCEEEEEECCCEEEEECCCCCEEEEEEEECCCCEEECCCEEEEEECCC
T ss_conf 99323679999984069999999289998589991999984876079746899799999848999980799899995577
Q ss_pred CCCCCHHHHHCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 543100110001--------------------122222222111111111122221111111122011100123211222
Q gi|254781052|r 99 RDEDESIKQNSP--------------------NSTANGLPEITDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILK 158 (436)
Q Consensus 99 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k 158 (436)
++.......... .+.....+.......++.+||++|++|+|+||||+.|.|||++|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asP~aRklA~e~gIdl~~I~gtG~~GRItk 160 (428)
T 3dva_I 81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK 160 (428)
T ss_dssp -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCH
T ss_conf 64332211121111232222332223444445766553334567656556791678999882999777778899984356
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 10000111012332222123333333334454445544566555556531012331000000000121100122232222
Q gi|254781052|r 159 SDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNE 238 (436)
Q Consensus 159 ~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~e 238 (436)
+||++|+.+...+.......... ...............+++++++|||+||++|++||+++||+|++.+
T Consensus 161 ~DV~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~rm~~S~~tip~~t~~~e 229 (428)
T 3dva_I 161 EDIDAFLAGGAKPAPAAAEEKAA-----------PAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE 229 (428)
T ss_dssp TTTTTTSCC-----------------------------------------------------------------------
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 77888765014665433222355-----------5445665665568740433508889888766532412763667778
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEECCCCCEEEEECCCCCCCEEE
Q ss_conf 23321134345444432002311124321012222101146865431235--6833573036654157716872111351
Q gi|254781052|r 239 VNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKNYCHIGVAVGTDKGLVVPVIR 316 (436)
Q Consensus 239 vd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lNa~~~--~~~i~~~~~vnigiAv~~~~GL~vPVI~ 316 (436)
+|+++++++|++++..+.. .+.|+||++||+||+++||++||.+|++|+ ++.+++++++||||||++++||+|||||
T Consensus 230 vdvt~l~~~r~~~~~~~~~-~~~klt~~~~likA~a~AL~~~P~~Nas~~~~~~~i~~~~~vnigiAv~~~~GLivPVIk 308 (428)
T 3dva_I 230 ADVTKLVAHRKKFKAIAAE-KGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIK 308 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCEEEEEECCCCCCCCCEE
T ss_conf 9704799999999987533-466345599999999999874802160794588815541555358898459970343030
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCEEEEEECCCEEEEEEECCEEEEE
Q ss_conf 34325989999987653101222235720025840888615232621011201588707898435135678888957895
Q gi|254781052|r 317 HADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIR 396 (436)
Q Consensus 317 ~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~~~~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~ 396 (436)
|||+|+|.+|++++++|++|||+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++|++++|++.+|
T Consensus 309 ~a~~~~l~~i~~~~~~l~~~ar~~~l~~~dl~ggTfTiSNlG~~G~~~~tpii~ppq~aIL~vG~i~~~pv~~~g~i~~~ 388 (428)
T 3dva_I 309 HADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAA 388 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCEEEEE
T ss_conf 55649999999999999999983999979908963799777656653577542689669997564446768889978898
Q ss_pred EEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf 488999973101140288999999999997098988735
Q gi|254781052|r 397 PMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILD 435 (436)
Q Consensus 397 ~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~~ 435 (436)
++|+||||||||+|||++||+||++|+++||||+.||||
T Consensus 389 ~~~~lsls~DHRvidGa~aa~Fl~~l~~~le~P~~lll~ 427 (428)
T 3dva_I 389 PMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427 (428)
T ss_dssp ---------------------------------------
T ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHC
T ss_conf 799999985160116399999999999987598988507
No 2
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 layers); 2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=0 Score=540.88 Aligned_cols=232 Identities=55% Similarity=0.984 Sum_probs=228.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65310123310000000001211001222322222332113434544443200231112432101222210114686543
Q gi|254781052|r 205 LSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 (436)
Q Consensus 205 ~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lN 284 (436)
..++++|+++|||+||++|++||+++||+|++.++|+++++++|+++++.+.++.|.|+||++|++||+++||++||.+|
T Consensus 2 ~~ee~ipls~~Rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~g~~lt~~~~likA~a~aL~~~P~~N 81 (233)
T 1scz_A 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVN 81 (233)
T ss_dssp CSCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHC
T ss_conf 98744468299999999999872559869999999759999999998876665238741489999999999999580521
Q ss_pred CCCCCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 12356833573036654157716872111351343259899999876531012222357200258408886152326210
Q gi|254781052|r 285 AEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLL 364 (436)
Q Consensus 285 a~~~~~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~~~ 364 (436)
++|+++++++++++|||+||++++||+|||||+||+|++.+|++++++|++|||+|+|+++|++||||||||+||||+.+
T Consensus 82 a~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~gkL~~~d~~ggTfTISNlG~~G~~~ 161 (233)
T 1scz_A 82 ASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp CEEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred CEEECCEEEEECCCCCCCEEECCCCEECCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCCCCC
T ss_conf 08938905994443443016617846512252512078999999999999999749999799568718997687667540
Q ss_pred ECCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 112015887078984351356788889578954889999731011402889999999999970989887359
Q gi|254781052|r 365 SSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 (436)
Q Consensus 365 ~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~~~ 436 (436)
|+|||||||+||||+|+++++|++.+|+++++++|+||||||||+|||++||+||++|+++||||+.|||||
T Consensus 162 ~tpii~ppq~aIlgvG~i~~~pv~~~g~i~ir~~~~lsls~DHRviDGa~aa~Fl~~l~~~LE~P~~lll~~ 233 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred CCCCCCCCCCEEEEECCCEEECCCCCCEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 036657995459850443645456599489999999998803234053999999999999985989897179
No 3
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=0 Score=530.76 Aligned_cols=234 Identities=32% Similarity=0.509 Sum_probs=223.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55555653101233100000000012110012223222223321134345444432002311124321012222101146
Q gi|254781052|r 200 SVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQE 279 (436)
Q Consensus 200 ~~~~~~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~ 279 (436)
........+++|+++|||+||++|++||+++||||++.++|+++++++|++++... ++.|+|+|+++||+||++.||++
T Consensus 8 ~~~~~g~~e~v~ls~~rk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~r~~l~~~~-~~~~~klt~~~~likA~a~aL~~ 86 (243)
T 1dpb_A 8 DFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKE 86 (243)
T ss_dssp CGGGSSCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 74358971798883999999999998720698799999997556899876542001-13586343899999999999864
Q ss_pred CCCCCCCCCCC--CEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86543123568--3357303665415771687211135134325989999987653101222235720025840888615
Q gi|254781052|r 280 IKGVNAEIDGD--HIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNG 357 (436)
Q Consensus 280 ~P~lNa~~~~~--~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNl 357 (436)
||.+|++|+++ .+.++.++||||||++++||+|||||+||+||+.+|++++++|+++||+|+|+++|++||||||||+
T Consensus 87 ~P~~Na~~~~~~~~~~~~~~inigiAv~~~~GL~vPVIk~a~~~sl~eia~~i~~l~~~ar~~~l~~~d~~ggTfTisNl 166 (243)
T 1dpb_A 87 LPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSL 166 (243)
T ss_dssp SGGGGEEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEEC
T ss_pred CHHHHCEECCCCCEEEEECCEEEEEECCCCCCCCCCEECCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECC
T ss_conf 84632317589989999634457740236788405647562227999999999999999873898854428956974458
Q ss_pred CCCCCCEECCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 23262101120158870789843513567888895789548899997310114028899999999999709898873
Q gi|254781052|r 358 GVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 (436)
Q Consensus 358 G~~G~~~~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~ 434 (436)
||||+.+|+|||||||+||||+|+++++|++++|++++|++|+||||||||+|||++||+||++|+++||||++|||
T Consensus 167 G~~G~~~~tpiInppq~aILgvG~i~~~pv~~~g~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll 243 (243)
T 1dpb_A 167 GHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp TTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred CCCCCEEEEEEECCCCCEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECCHHCHHHHHHHHHHHHHHHHCHHHHHC
T ss_conf 88763368841218862021126747888998999899889999998164040589999999999999869997759
No 4
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=0 Score=523.43 Aligned_cols=233 Identities=33% Similarity=0.554 Sum_probs=226.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55653101233100000000012110012223222223321134345444432002311124321012222101146865
Q gi|254781052|r 203 EELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKG 282 (436)
Q Consensus 203 ~~~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~ 282 (436)
....++++|+++|||+||++|++||+++||+|++.|+|+|+++++|+++++.+.++.|.|+|+++|++||+++||++||.
T Consensus 14 ~~~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~g~~~t~~~~~ikAva~aL~~~P~ 93 (256)
T 3mae_A 14 SAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQ 93 (256)
T ss_dssp -CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 88998485371999999999999750498699999983476999999998876654187643999999998777653851
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 43123568335730366541577168721113513432598999998765310122223572002584088861523262
Q gi|254781052|r 283 VNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGS 362 (436)
Q Consensus 283 lNa~~~~~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~ 362 (436)
+|++|+++.+.++.++||||||++++||+|||||+||+|+|.+|++++++|++|||+|+|+++|++||||||||+|+||+
T Consensus 94 ~Na~~~~~~i~~~~~vnigiAV~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~kar~~~l~~~d~~ggTfTISNlG~~g~ 173 (256)
T 3mae_A 94 LNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp TSEEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred HHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCCC
T ss_conf 10155554211015687468986289648611367665999999999999999998499996896786688643787553
Q ss_pred CEECCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHH---HHHC
Q ss_conf 101120158870789843513567888895789548899997310114028899999999999709898---8735
Q gi|254781052|r 363 LLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPER---FILD 435 (436)
Q Consensus 363 ~~~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~---ll~~ 435 (436)
.+|+|||||||+||||+|+++++|++.+|++++|++|+||||||||+|||++||+||++|+++||||++ +|+|
T Consensus 174 ~~~tpii~ppq~aIlgvG~i~~~pvv~dg~i~~r~~m~lslt~DHRviDGa~Aa~FL~~lk~~LE~p~~~~~~~~e 249 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENTALYE 249 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTCCCC-
T ss_pred EEEEEECCCCCCEEECCCCEEEEEEEECCEEEEEEEEEEEEEEECCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 2466533699721642444188889999998997689998985620407399999999999996599867640005
No 5
>2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=0 Score=516.63 Aligned_cols=230 Identities=33% Similarity=0.538 Sum_probs=220.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65310123310000000001211001222322222332113434544443200231112432101222210114686543
Q gi|254781052|r 205 LSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 (436)
Q Consensus 205 ~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lN 284 (436)
..++.+|+++|||+||++|++||+ +||||++.++|+|+++++|+++|+.+.. .|+|+||++||+||+++||++||.+|
T Consensus 29 ~~~~~~pl~~~rk~ia~~m~~S~~-iPh~~~~~evD~t~l~~~R~~l~~~~~~-~g~klS~~~~likAva~aL~~~P~~N 106 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAALK-IPHFGYCDEVDLTELVKLREELKPIAFA-RGIKLSFMPFFLKAASLGLLQFPILN 106 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGGG-SCEEEEEEEEECHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred CCCEEEECHHHHHHHHHHHHHHHH-CCEEEEEEEEEHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCHHC
T ss_conf 986488864999999999999752-7809999998779999999985455551-39834379999999999998490512
Q ss_pred CCCCC--CCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 12356--8335730366541577168721113513432598999998765310122223572002584088861523262
Q gi|254781052|r 285 AEIDG--DHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGS 362 (436)
Q Consensus 285 a~~~~--~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~ 362 (436)
++|++ +.++++.++|||+||++++||+||||++||++++.+|++++++|++|+|+|+|+++|++||||||||+|+||+
T Consensus 107 a~~~~~~~~i~~~~~v~i~iav~~~~GL~vPVI~~a~~~sl~~ia~~~~~l~~~ar~~~L~~~d~~ggTftisnlG~~g~ 186 (262)
T 2ii3_A 107 ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGG 186 (262)
T ss_dssp EEECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCC
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 24432366366764024343201577734443046544132889999999999987289775456882699526787654
Q ss_pred CEECCCCCCCCEEEEEECCCEEEEEEE-CCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 101120158870789843513567888-89578954889999731011402889999999999970989887359
Q gi|254781052|r 363 LLSSPILNPPQSGILGMHKIQERPIVE-DGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 (436)
Q Consensus 363 ~~~~piI~ppq~aIl~vg~i~~~~v~~-~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~~~ 436 (436)
.+|+|||||||+||||+|+++++|++. ||++.+|++|+||||||||+|||++||+||++|+++||||+.|||||
T Consensus 187 ~~~tpii~ppq~aIlgvG~i~~~pvv~~dg~i~~r~~m~lsls~DHRviDGa~Aa~FL~~l~~~LE~P~~lll~~ 261 (262)
T 2ii3_A 187 TYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261 (262)
T ss_dssp SCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHC
T ss_pred CEEECCCCCCCCEEEECCCEEEEEEECCCCCEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHCCC
T ss_conf 148712348852155046507887985799389834889998801334061999999999999976999986047
No 6
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=0 Score=511.81 Aligned_cols=228 Identities=29% Similarity=0.460 Sum_probs=219.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65310123310000000001211001222322222332113434544443200231112432101222210114686543
Q gi|254781052|r 205 LSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 (436)
Q Consensus 205 ~~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lN 284 (436)
...+++|+++|||+||++|++||+++||||++.++|+|+++++|+++++.++ .+.|+|+++|++||++.||++||.+|
T Consensus 10 ~~~~~vpls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~--~~~k~s~~~~~ikA~~~al~~~P~~N 87 (239)
T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE--GRSKISVNDFIIKASALACLKVPEAN 87 (239)
T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHT--TSSCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9837867729999999999998843987999999842899999999777641--25545601789999999999988763
Q ss_pred CCCCCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 12356833573036654157716872111351343259899999876531012222357200258408886152326210
Q gi|254781052|r 285 AEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLL 364 (436)
Q Consensus 285 a~~~~~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~~~ 364 (436)
++|+++.+.+++++||||||++++||+||||++|+++++.+|++++++|.++||+|+|+++|++||||||||+|+||+++
T Consensus 88 a~~~~~~i~~~~~vnigiAV~~~~gL~vPvI~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~dl~ggTfTISNlG~~G~~~ 167 (239)
T 3b8k_A 88 SSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKN 167 (239)
T ss_dssp TTSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSS
T ss_pred HCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCCCCEEE
T ss_conf 10356469993132331258738985310698766089899999999999999839999788079528876267754235
Q ss_pred ECCCCCCCCEEEEEECCCEEEEEEECC--EEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 112015887078984351356788889--5789548899997310114028899999999999709898873
Q gi|254781052|r 365 SSPILNPPQSGILGMHKIQERPIVEDG--QIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 (436)
Q Consensus 365 ~~piI~ppq~aIl~vg~i~~~~v~~~g--~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~ 434 (436)
|+|||||||+||||+|+++++|++.+| .+++|++|+||||||||++||++||+||++|+++||||++|||
T Consensus 168 ~tpii~ppq~ail~vG~i~~~pv~~~~~~~i~~r~~m~lslt~DHRviDGa~aa~FL~~l~~~LE~P~~lll 239 (239)
T 3b8k_A 168 FSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred EECCCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 643667995137215674678899879986799878797688321150689999999999999709887759
No 7
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=496.46 Aligned_cols=226 Identities=28% Similarity=0.480 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53101233100000000012110012223222223321134345444432002311124321012222101146865431
Q gi|254781052|r 206 SEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNA 285 (436)
Q Consensus 206 ~~~~vpls~mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lNa 285 (436)
+.+.+|+++|||+||++|++||+++||||++.|+|+|+++++|+++++ .|.|+|+++|++||+++||++||.+|+
T Consensus 13 ~~~~~pl~~~r~~ia~~m~~S~~~iPh~~~~~evd~t~l~~~r~~~~~-----~~~k~s~~~~~ikA~~~aL~~~P~~N~ 87 (250)
T 3l60_A 13 GPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNS 87 (250)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSE
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHHHH-----HCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 974307659999999999998861997999999876999999898765-----255553115379999999984842377
Q ss_pred CCCC----CCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 2356----833573036654157716872111351343259899999876531012222357200258408886152326
Q gi|254781052|r 286 EIDG----DHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYG 361 (436)
Q Consensus 286 ~~~~----~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G 361 (436)
+|++ +.+++++++||||||++++||+||||++||++++.+|++++++|+++||+|+|+++|++||||||||+|+||
T Consensus 88 ~~~~~~~~~~i~~~~~vnIgvAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggtftisnlG~~g 167 (250)
T 3l60_A 88 TWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALG 167 (250)
T ss_dssp EEECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGT
T ss_pred CEEECCCCCEEEEECCEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 26523688669997544320444678966983581775489999999889999998728978201488339998788877
Q ss_pred CCEECCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 210112015887078984351356788889578954889999731011402889999999999970989887359
Q gi|254781052|r 362 SLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 (436)
Q Consensus 362 ~~~~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~~ll~~~ 436 (436)
+.+|+|||||||+||||+|+++++|++.+|++.+|++|+||||||||+|||++||+||+.|+++||||+.|||||
T Consensus 168 ~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~m~lslt~DHRviDGa~aa~FL~~lk~~LE~P~~lLl~~ 242 (250)
T 3l60_A 168 VDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 (250)
T ss_dssp CSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred CCEEEECCCCCCCEEEECCCCCEEEEEECCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHC
T ss_conf 341784146996338741565247788899889978999988852522162999999999999971999999755
No 8
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=5.8e-42 Score=295.26 Aligned_cols=202 Identities=12% Similarity=0.127 Sum_probs=172.1
Q ss_pred CCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 012331-0000000001211001222322222332113434544443200231112432101222210114686543123
Q gi|254781052|r 209 RVKMSR-LRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI 287 (436)
Q Consensus 209 ~vpls~-mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lNa~~ 287 (436)
.+.++. .||...+.++. .+.|||+++.++|+|+|..++++. ++||+++++||+++||.+||.||++|
T Consensus 5 ~id~~~w~Rk~~f~~f~~--~~~P~~~it~~vDvt~l~~~~K~~----------~~sf~~~~l~a~~~Al~~~p~~n~~~ 72 (213)
T 3cla_A 5 KFDVKNWVRREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMAI 72 (213)
T ss_dssp ECCCTTCTTHHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHTS----------SCCHHHHHHHHHHHHHTTCGGGSEEE
T ss_pred EECCCCCCCHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHCHHHHEEE
T ss_conf 757566844899999747--999789999898699999999980----------99858999999999999695864698
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCC-CCEEEEECCCCCCCCEE
Q ss_conf 568335730366541577168721113513432598999998765310122223-5720025-84088861523262101
Q gi|254781052|r 288 DGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGH-LSMRDLQ-NGTFTISNGGVYGSLLS 365 (436)
Q Consensus 288 ~~~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~~-l~~~el~-ggt~tiSNlG~~G~~~~ 365 (436)
+++++++++++|+|+||++++||++|+|++++++++.++++++++++++||+++ +.+++.. ++||+|||+|+++.+.+
T Consensus 73 ~~~~i~~~~~i~igiav~~~~gl~vp~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~t~~iS~lg~~~ft~i 152 (213)
T 3cla_A 73 KDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSF 152 (213)
T ss_dssp ETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCC
T ss_pred ECCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 59988883774759999848982884693488799999999999999999736788865457898899777767564440
Q ss_pred CCCCCCCC---EEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHH
Q ss_conf 12015887---078984351356788889578954889999731011402889999999999970989
Q gi|254781052|r 366 SPILNPPQ---SGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPE 430 (436)
Q Consensus 366 ~piI~ppq---~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P~ 430 (436)
++.++.++ ..|++.|.+.++ +| |.+|+|||+||||++||+.+|+||+.|+++||||.
T Consensus 153 ~~~~~~~~~~~~Pii~~Gk~~~~----~~----r~~m~lsl~~dHrvvDG~~~a~Fl~~lk~~le~p~ 212 (213)
T 3cla_A 153 NLNVANFTDYFAPIITMAKYQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKL 212 (213)
T ss_dssp CCCCSCCTTCCSCEEEEECCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCEECEEECCCCEEE----CC----EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 35777773234277943674888----89----89999999962301172999999999999975837
No 9
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A*
Probab=100.00 E-value=1.9e-41 Score=291.88 Aligned_cols=206 Identities=9% Similarity=0.067 Sum_probs=179.6
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31012331-00000000012110012223222223321134345444432002311124321012222101146865431
Q gi|254781052|r 207 EERVKMSR-LRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNA 285 (436)
Q Consensus 207 ~~~vpls~-mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lNa 285 (436)
.+.+.++. .||...+.+.. .+.|||+++.++|+|++++++++. ++||+++++||+++||.+||++|+
T Consensus 8 ~~~Id~~~w~R~~~f~~f~~--~~~P~~~~t~~iDvt~l~~~~k~~----------~~sf~~~~~~ai~~Al~~~Pe~n~ 75 (219)
T 1q23_A 8 YTTVDISQWHRKEHFEAFQS--VAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRM 75 (219)
T ss_dssp EEECCGGGCTTHHHHHHHTT--TTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSE
T ss_pred CEEECHHHCCHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHCHHHHE
T ss_conf 75876332503999999747--899889999998689999999982----------998289999999999985968648
Q ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 2356833573036654157716872111351343259899999876531012222-357200258408886152326210
Q gi|254781052|r 286 EIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAG-HLSMRDLQNGTFTISNGGVYGSLL 364 (436)
Q Consensus 286 ~~~~~~i~~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~~-~l~~~el~ggt~tiSNlG~~G~~~ 364 (436)
+|+++++++++++|+|+||++++||++|++++++++++.++++++.++..+++++ +|.+++++||||||||+|++|.+.
T Consensus 76 ~~~~~~i~~~~~i~~~~av~~~~~~~~~~i~~~~~~~l~~f~~~~~~~~~~~~~~~~l~~~~~~~~t~~iS~lg~~~f~~ 155 (219)
T 1q23_A 76 AMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTS 155 (219)
T ss_dssp EEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSE
T ss_pred EEECCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 99599789945634688898489869814805888999999999999999997258999410359989998478667477
Q ss_pred ECCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCH
Q ss_conf 11201588707898435135678888957895488999973101140288999999999997098
Q gi|254781052|r 365 SSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDP 429 (436)
Q Consensus 365 ~~piI~ppq~aIl~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P 429 (436)
+++++++|+.+++++.... +++..+| |.+|+|||+||||++||+++|+||+.|+++||+.
T Consensus 156 ~~~~~~~~~~~~~p~~~~G-k~~~~~g----r~~mplsl~~dHr~vDG~~aa~Fl~~l~~~le~~ 215 (219)
T 1q23_A 156 FDLNVANMDNFFAPVFTMG-KYYTQGD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219)
T ss_dssp EEEEESCCTTCCSCEEEEC-CCEEETT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHEEEEEEECC-CEEEECC----EEEEEEEEEEECHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 0478889703089998615-5698999----0999999997401427499999999999998540
No 10
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=9.9e-40 Score=280.54 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=171.4
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEE
Q ss_conf 0000000001211001222322222332113434544443200231112432101222210114686543123568-335
Q gi|254781052|r 215 LRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGD-HIV 293 (436)
Q Consensus 215 mRk~IA~~m~~S~~tiP~~t~~~evd~t~l~~~r~~l~~~~~~~~g~klt~~~~likA~a~Al~~~P~lNa~~~~~-~i~ 293 (436)
.||...+.+... ..||++++.++|+|+++++|++. |+||+++++||+++||.+||++|++|+++ +++
T Consensus 14 ~R~~~f~~f~~~--~~P~~s~t~~iDvt~l~~~~k~~----------k~sf~~~l~~av~~al~~~Pe~n~~~~~d~~i~ 81 (217)
T 2i9d_A 14 ERKENFNFFRHF--QNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVV 81 (217)
T ss_dssp TTHHHHHHHTTC--SBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEE
T ss_pred CHHHHHHHHHCC--CCCEEEEEEEEEHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHCHHHEEEECCCCEEE
T ss_conf 459999998578--99879999998889999999983----------998279999999999863967649984895799
Q ss_pred EEECCCCCEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCEEEEECCCCCCCCEEC
Q ss_conf 7303665415771687211135134325989999987653101222-------235720025840888615232621011
Q gi|254781052|r 294 YKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARA-------GHLSMRDLQNGTFTISNGGVYGSLLSS 366 (436)
Q Consensus 294 ~~~~vnigiAv~~~~GL~vPVI~~a~~~~l~~i~~~~~~l~~~ar~-------~~l~~~el~ggt~tiSNlG~~G~~~~~ 366 (436)
+++++|+|+||++++|+++|++++++.+++.++.+++.++.+++++ +++.+.++++|||+|||+|.+|.+.++
T Consensus 82 ~~~~v~i~~av~~~~~~~~~~i~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSnlg~~~ft~~~ 161 (217)
T 2i9d_A 82 LYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSIT 161 (217)
T ss_dssp EESCCEEEEEEECSTTSCEEEEEECCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEEC
T ss_pred ECCCCCEEEEEEECCCCEECEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 83765579999827994764182488799999999999999998761102431578874567988999568865655624
Q ss_pred CCCCCCCEE---EEEECCCEEEEEEECCEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf 201588707---8984351356788889578954889999731011402889999999999970
Q gi|254781052|r 367 PILNPPQSG---ILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLE 427 (436)
Q Consensus 367 piI~ppq~a---Il~vg~i~~~~v~~~g~~~~~~~~~ltls~DHRvidGa~aa~Fl~~l~~~le 427 (436)
+.+++|+.. +++.|.+.+ .+| |.+|+|||+||||++||++||+||+.|+++||
T Consensus 162 ~~~~~~~~~~~P~i~~Gk~~~----~~g----r~~mpvslt~DHrviDG~~aa~Fl~~l~~~LE 217 (217)
T 2i9d_A 162 GTQEKRSGNNYPLLNAGKAII----REG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217 (217)
T ss_dssp CCBCSTTCCSSCEEEECCCEE----ETT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCEEEEEECCCEEE----ECC----EEEEEEEEEEECHHHCHHHHHHHHHHHHHHHC
T ss_conf 666688531788998366688----999----69999978966235481999999999999749
No 11
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=292.52 Aligned_cols=153 Identities=29% Similarity=0.444 Sum_probs=123.1
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEECCCEEEEEEC
Q ss_conf 84277768878870079999998268878348974999952762456667878789999707888-85517711899834
Q gi|254781052|r 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD-TVTYGGFLGYIVEI 97 (436)
Q Consensus 19 M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd-~v~VG~~i~~i~~~ 97 (436)
+..||+||+||++|+||+|++|||++||.|++||+||||||||++||||||++|+|.+|++++|+ +++||.+|++|.+.
T Consensus 2 ~~iei~~P~lge~~~eg~I~~Wlvk~GD~V~~gd~L~evETDKa~~Ev~ap~~G~l~~i~v~eG~~~v~vg~~i~~i~~~ 81 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEEECCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEECC
T ss_conf 96699468999986269998998189999779997999992866899987267179887762375212456410232022
Q ss_pred CCCCCCHHHHHCCC-----C-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 55431001100011-----2-------------22222221111111111222211111111220111001232112221
Q gi|254781052|r 98 ARDEDESIKQNSPN-----S-------------TANGLPEITDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKS 159 (436)
Q Consensus 98 ~~~~~~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~ 159 (436)
+++........... . .............++.+||++||||+|+||||++|.|||++|||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~E~gIdl~~V~GTG~~GRItk~ 161 (229)
T 1zy8_K 82 GEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKE 161 (229)
T ss_dssp ------------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCEEHH
T ss_conf 23333334564333433334434456666665565544322233333234845455687849776351022899949799
Q ss_pred CCHHHHHCCCCC
Q ss_conf 000011101233
Q gi|254781052|r 160 DVMAAISRSESS 171 (436)
Q Consensus 160 Dv~~~~~~~~~~ 171 (436)
||++|+.++...
T Consensus 162 DV~~~i~~~~~~ 173 (229)
T 1zy8_K 162 DALKLVQLKQTG 173 (229)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHCCCC
T ss_conf 999998601457
No 12
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.93 E-value=1.6e-25 Score=186.63 Aligned_cols=81 Identities=35% Similarity=0.550 Sum_probs=76.2
Q ss_pred EEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEECCCEEEEEECCC
Q ss_conf 277768878870079999998268878348974999952762456667878789999707888-8551771189983455
Q gi|254781052|r 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD-TVTYGGFLGYIVEIAR 99 (436)
Q Consensus 21 ~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd-~v~VG~~i~~i~~~~~ 99 (436)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++|||+||++|+|.++++++|| +|+||++||+|.+..+
T Consensus 28 ~~I~mP~lg~~~~Eg~I~~W~vk~GD~V~~gd~L~evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~~Ia~I~~~~~ 107 (128)
T 1y8o_B 28 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEA 107 (128)
T ss_dssp EEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSGG
T ss_pred EEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCCC
T ss_conf 39858999998317999899957999980899799998286579884267879999996679838818998999934776
Q ss_pred CC
Q ss_conf 43
Q gi|254781052|r 100 DE 101 (436)
Q Consensus 100 ~~ 101 (436)
+.
T Consensus 108 ~~ 109 (128)
T 1y8o_B 108 DI 109 (128)
T ss_dssp GG
T ss_pred CC
T ss_conf 65
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=187.41 Aligned_cols=83 Identities=30% Similarity=0.489 Sum_probs=77.9
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEECCCEEEEEE
Q ss_conf 284277768878870079999998268878348974999952762456667878789999707888-8551771189983
Q gi|254781052|r 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD-TVTYGGFLGYIVE 96 (436)
Q Consensus 18 ~M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd-~v~VG~~i~~i~~ 96 (436)
.|.++|+||+||++|+||+|++|||++||.|++||+||+|||||+++||+||++|+|.+|++++|+ +|+||++||+|.+
T Consensus 5 ~~~~~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~~ia~i~~ 84 (108)
T 2dne_A 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84 (108)
T ss_dssp CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCCEEEEEEC
T ss_conf 78608979989998656999899936999980799899998385768986078969999996679848769998999924
Q ss_pred CCCC
Q ss_conf 4554
Q gi|254781052|r 97 IARD 100 (436)
Q Consensus 97 ~~~~ 100 (436)
..++
T Consensus 85 ~~e~ 88 (108)
T 2dne_A 85 KPED 88 (108)
T ss_dssp CHHH
T ss_pred CCCC
T ss_conf 8665
No 14
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.90 E-value=1.8e-23 Score=173.14 Aligned_cols=81 Identities=33% Similarity=0.545 Sum_probs=76.2
Q ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEECCCEEEEEECC
Q ss_conf 4277768878870079999998268878348974999952762456667878789999707888-855177118998345
Q gi|254781052|r 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD-TVTYGGFLGYIVEIA 98 (436)
Q Consensus 20 ~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd-~v~VG~~i~~i~~~~ 98 (436)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++|++||++|+|.++++++|| .|++|++||+|.+.+
T Consensus 5 ~i~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CEEEECCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEECCC
T ss_conf 86997798999865799999863999999789979999907788868718999999999778982975999899995667
Q ss_pred CC
Q ss_conf 54
Q gi|254781052|r 99 RD 100 (436)
Q Consensus 99 ~~ 100 (436)
++
T Consensus 85 ed 86 (87)
T 3crk_C 85 AD 86 (87)
T ss_dssp TT
T ss_pred CC
T ss_conf 86
No 15
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=172.73 Aligned_cols=84 Identities=38% Similarity=0.634 Sum_probs=78.0
Q ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEECCCEEEEEE
Q ss_conf 284277768878870079999998268878348974999952762456667878789999707888-8551771189983
Q gi|254781052|r 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD-TVTYGGFLGYIVE 96 (436)
Q Consensus 18 ~M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd-~v~VG~~i~~i~~ 96 (436)
.++.+|+||+||++|+||+|++|||++||+|++||+||+|||||+++||+||++|+|.++++++|+ .|+||++||+|.+
T Consensus 5 ~~~i~i~mP~lg~~~~eg~i~~W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~~i~~i~~ 84 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCCEEEEEEC
T ss_conf 78789977989998437999999908999993899899998583899997489989999997689829779998999903
Q ss_pred CCCCC
Q ss_conf 45543
Q gi|254781052|r 97 IARDE 101 (436)
Q Consensus 97 ~~~~~ 101 (436)
.+++.
T Consensus 85 ~~e~~ 89 (98)
T 2dnc_A 85 EGEDW 89 (98)
T ss_dssp TTSCS
T ss_pred CCCCC
T ss_conf 87753
No 16
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.87 E-value=9.7e-23 Score=168.27 Aligned_cols=78 Identities=41% Similarity=0.635 Sum_probs=75.5
Q ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 427776887887007999999826887834897499995276245666787878999970788885517711899834
Q gi|254781052|r 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 20 ~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
+.+|+||+||++|+||+|++|+|++||+|++||+||+|||||+++||+||++|+|.++++++|+.|++|++|++|.+.
T Consensus 1 aiei~vP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ei~ap~~G~v~~i~v~~G~~v~~G~~l~~i~~~ 78 (79)
T 1ghj_A 1 AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp CEEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred CEEEECCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 907985989998646999999927989990899899999586589998346899999984899997899999999479
No 17
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.85 E-value=2.6e-21 Score=158.80 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=75.6
Q ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 4277768878870079999998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 20 ~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
.++|+||+||++|++|+|++|++++||.|++||+||++||||+.+||+||++|+|.++++++||.|++|++|+.|+...
T Consensus 4 ii~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~Gd~l~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~~L~~Ie~e~ 82 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred EEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 0798789999984159999999089799988998999983772897883889999999538999988999999997778
No 18
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.84 E-value=6e-23 Score=169.65 Aligned_cols=77 Identities=48% Similarity=0.689 Sum_probs=74.5
Q ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 42777688788700799999982688783489749999527624566678787899997078888551771189983
Q gi|254781052|r 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 20 ~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
+.+|+||+||++|++|+|++|||++||+|++||+||+|||||+++||+||++|+|.++++++||.|++|++||+|.+
T Consensus 2 ~iei~vP~lg~~~~~g~i~~w~v~~Gd~V~~gd~l~eiEtdK~~~ei~a~~~G~l~~i~v~~G~~v~vG~~l~~i~e 78 (80)
T 1pmr_A 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 64798899999975899999990798998799989999938658998703689999998689999879999999979
No 19
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.80 E-value=7.7e-20 Score=149.11 Aligned_cols=76 Identities=30% Similarity=0.553 Sum_probs=73.5
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 842777688788700799999982688783489749999527624566678787899997078888551771189983
Q gi|254781052|r 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 19 M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
|.++|+||+||++ +++|++|++++||.|++||+||++||||+.++++||++|+|.++++++|+.|++|++|+.|..
T Consensus 1 M~~ei~~P~lg~~--~~~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~v~~G~~l~~ie~ 76 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CCEEEECCCCCCC--EEEEEEEEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 9628987999997--289999991797999899989999907545199846527999999589899589999999964
No 20
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.77 E-value=1.7e-19 Score=146.82 Aligned_cols=76 Identities=28% Similarity=0.552 Sum_probs=72.8
Q ss_pred EEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 27776887887007999999826887834897499995276245666787878999970788885517711899834
Q gi|254781052|r 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 21 ~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.+|+||+|| ++++++|++|+|++||.|++||+||++||||++++++||++|+|.++++++||.|++|++|+.|...
T Consensus 3 iei~~P~lg-~~~~~~I~~~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~ 78 (81)
T 1gjx_A 3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred EEEECCCCC-CCCEEEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 899889999-8748999999828979990899899999388379998055479999982898998899999999456
No 21
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.72 E-value=4.7e-17 Score=130.72 Aligned_cols=74 Identities=32% Similarity=0.470 Sum_probs=70.1
Q ss_pred EEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 27776887887007999999826887834897499995276245666787878999970788885517711899834
Q gi|254781052|r 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 21 ~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.-|+||++|+ +|+|++|++++||.|++||+||++|++|+.++++||++|+|.++++++||.|++|++|+.|+..
T Consensus 2 e~i~~P~~g~---~g~i~~~~v~~Gd~V~~G~~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CEEECCCCCC---CEEEEEEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 8798998989---6899999827979990899899999567158998798999999935896998999999999478
No 22
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.66 E-value=7.3e-18 Score=136.05 Aligned_cols=74 Identities=30% Similarity=0.515 Sum_probs=70.3
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 84277768878870079999998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 19 M~~ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
|.++|++|..|+ |++|++++||.|++||+|+++||||+.++++||++|+|.+|++++||.|++|++|+.|...+
T Consensus 1 M~~~v~~P~~~~------I~~~~v~~Gd~V~~gd~l~~iE~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~~l~~ie~~~ 74 (85)
T 2k7v_A 1 MVKEVNVPDIVE------VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCSCCCCCSCCC------CCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred CCCEEECCCCEE------EEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 963797999788------98999279999917998999981883799863789899899968989979999999997488
No 23
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=122.02 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=61.4
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 9999998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
|+|++|+|++||+|++||+||+|||+|..++|+||++|+|.+|++++||.|.+|++|+.|.+..
T Consensus 23 G~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~i~a~~~G~V~~i~v~~Gd~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE 86 (99)
T ss_dssp EEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 6999998289899868998999973762379984757808799728989968999899996388
No 24
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.4e-15 Score=117.08 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=65.0
Q ss_pred EECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 7768878870079999998268878348974999952762456667878789999707888855177118998
Q gi|254781052|r 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 23 i~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
-..|....+...|+|++|+|++||.|++||+||+|||+|+.++|.||.+|+| ++++++|+.|++|++|++|+
T Consensus 14 ~~dp~~v~ap~~G~i~~~~V~~Gd~V~~Gd~l~~iEt~K~~~~V~A~~~G~i-~~~v~~G~~V~~G~~l~~ie 85 (100)
T 2dn8_A 14 ENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARLE 85 (100)
T ss_dssp CCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEE-EECSCTTCEECSSCEEEEEC
T ss_pred CCCCCEEECCCCEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEE-EEEECCCCEECCCCEEEEEE
T ss_conf 8899888789986999999379899858997999982732689977889899-99978989999999999996
No 25
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.53 E-value=1.9e-14 Score=113.44 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=61.4
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 9999998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
|+|++|++++||.|++||+||++||+|..++++||++|+|.++++++||.|++|++|+.|.+..
T Consensus 8 G~i~~~~v~~Gd~V~~g~~l~~ie~~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~s 71 (72)
T 1z6h_A 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNST 71 (72)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGGC
T ss_pred EEEEEEECCCCCEECCCCEEEEEECCCCCCCEECCCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 8999999279899907989999981765530588979899999778979989999999994798
No 26
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.52 E-value=3.5e-14 Score=111.75 Aligned_cols=60 Identities=32% Similarity=0.455 Sum_probs=59.0
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEE
Q ss_conf 999999826887834897499995276245666787878999970788885517711899
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i 94 (436)
|+|++|++++||.|++||+||++||||..++++||++|++.++++++||.|.+|++|+.|
T Consensus 14 G~v~~~~v~~Gd~V~~g~~l~~iE~~K~~~~i~ap~~G~I~~i~v~~G~~V~~G~~L~~I 73 (74)
T 2d5d_A 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73 (74)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred CEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 799999948999993898899999356126998799989989994895998999999993
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=110.78 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=58.6
Q ss_pred CEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 0799999982688783489749999527624566678787899997078888551771189983
Q gi|254781052|r 33 NEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 33 ~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
..|+|++|+|++||.|++||+|++|||+|+.++|+||.+|+|. .++++||.|++|++|+.|+.
T Consensus 12 ~~G~i~~~~V~~Gd~V~~G~~l~~iEa~K~~~~I~ap~sG~I~-~~v~~Gd~V~~G~~l~~ie~ 74 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 74 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEE-ECSCTTCCCCTTCCCEEEEC
T ss_pred CCEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEE-EEECCCCEECCCCEEEEEEC
T ss_conf 8859999995798999179869999847447899868898999-99889899999999999945
No 28
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.45 E-value=1.4e-13 Score=107.83 Aligned_cols=67 Identities=31% Similarity=0.422 Sum_probs=61.9
Q ss_pred EEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEE
Q ss_conf 7776887887007999999826887834897499995276245666787878999970788885517711899
Q gi|254781052|r 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 (436)
Q Consensus 22 ei~mP~lGe~m~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i 94 (436)
+|.-|-- |+|.+|++++||+|++||+||++|++|..++|+||++|++.++++++||.|..|++|+.|
T Consensus 10 ~i~ap~~------G~i~~~~V~~Gd~V~~Gq~l~~iEamK~~~~v~ap~~G~I~~i~v~~G~~V~~G~~L~~I 76 (77)
T 1dcz_A 10 EIPAPLA------GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp EEEBSSS------CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred EEECCCC------EEEEEEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCCEEEEE
T ss_conf 6989999------599999838989986999899999435117997799979989981896997999999994
No 29
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=99.40 E-value=4.5e-14 Score=111.03 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=64.5
Q ss_pred EEECCCCCCCCCE----EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 7776887887007----9999998268878348974999952762456667878789999707888855177118998
Q gi|254781052|r 22 KILVPSLGESVNE----ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 22 ei~mP~lGe~m~E----g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
++.++.+.+++-. |+|++|+|++||.|++||+||+||++|..++|+||++|+|.+|++++||.|.+|++|+.|+
T Consensus 17 n~~~~~~~~~~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~Gd~V~~G~~L~~Ie 94 (94)
T 2jku_A 17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp -------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred EEEECCCCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 041127868989899996898998189999958987999980365389993889999899868979979999999979
No 30
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.18 E-value=7.4e-11 Score=89.74 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.8
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 000000000121100
Q gi|254781052|r 215 LRQTVAKRLKDAQNT 229 (436)
Q Consensus 215 mRk~IA~~m~~S~~t 229 (436)
-|..-.++|.++++.
T Consensus 415 ~R~~A~~~l~~aL~~ 429 (681)
T 3n6r_A 415 TRAAAIEAMRIALDS 429 (681)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 799999999998730
No 31
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=99.15 E-value=1.2e-10 Score=88.37 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=7.2
Q ss_pred CCCEEEECCCEEEEE
Q ss_conf 888855177118998
Q gi|254781052|r 81 KGDTVTYGGFLGYIV 95 (436)
Q Consensus 81 eGd~v~VG~~i~~i~ 95 (436)
.|..+..|...|.+.
T Consensus 221 ~g~~i~~~~~~~~~~ 235 (1150)
T 3hbl_A 221 HGNIVHLFERDCSVQ 235 (1150)
T ss_dssp SSCEEEEEEEEEEEE
T ss_pred CCCEEEEECCCCCCC
T ss_conf 999899633467666
No 32
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.13 E-value=5.4e-11 Score=90.68 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=55.1
Q ss_pred EEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 998268878348974999952762456667878789999707888855177118998
Q gi|254781052|r 39 TWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 39 ~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
+++|++||+|++||+||.+|++|..+++.||++|++.+|++++||.|..|++|+.|+
T Consensus 24 ~~~V~~Gd~V~~g~~l~~iEamK~~~~i~a~~~G~V~~i~v~~G~~V~~G~~L~~ie 80 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEECCCCEEECCCEEEEEEECCCHHHCCCCCCEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 853268999966878999997620120659999899899868979989999999979
No 33
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=99.03 E-value=2.1e-10 Score=86.80 Aligned_cols=13 Identities=15% Similarity=-0.051 Sum_probs=5.6
Q ss_pred CCEEEECCCEEEE
Q ss_conf 8885517711899
Q gi|254781052|r 82 GDTVTYGGFLGYI 94 (436)
Q Consensus 82 Gd~v~VG~~i~~i 94 (436)
|..+..|...|.+
T Consensus 238 g~~~~~~~r~cs~ 250 (1165)
T 2qf7_A 238 GNVVHLFERDCSV 250 (1165)
T ss_dssp SCEEEEEEEEEEE
T ss_pred CCEEEEECCCCCC
T ss_conf 9889971788888
No 34
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-10 Score=86.58 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 11111111122221111111122011100123211222100001110123
Q gi|254781052|r 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSES 170 (436)
Q Consensus 121 ~~~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~~~ 170 (436)
...+.++++||+||++|+|+||||++|.|||++|||+|+||+.|+.....
T Consensus 10 ~~~~~~~~asP~arklA~e~gidl~~I~GTG~~GRI~k~Dv~~~~~~~~~ 59 (70)
T 2coo_A 10 EIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTG 59 (70)
T ss_dssp CCSCCSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 46798852599999999994998878776499995819999999972157
No 35
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.81 E-value=3.7e-10 Score=85.17 Aligned_cols=45 Identities=31% Similarity=0.433 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 111112222111111112201110012321122210000111012
Q gi|254781052|r 125 FQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSE 169 (436)
Q Consensus 125 ~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~~ 169 (436)
.++.+||.+|++|+|+||||++|.|||++|||+|+||++|+....
T Consensus 3 ~~v~asP~aRkla~e~gidl~~V~gTG~~GRI~k~DV~~~~~~~~ 47 (62)
T 1w4i_A 3 REVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETA 47 (62)
T ss_dssp CSSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCCC
T ss_conf 765069999999999299887761689999383999999997346
No 36
>1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens}
Probab=98.77 E-value=5.3e-10 Score=84.12 Aligned_cols=47 Identities=28% Similarity=0.574 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 11111112222111111112201110012321122210000111012
Q gi|254781052|r 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSE 169 (436)
Q Consensus 123 ~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~~ 169 (436)
++.++.+||+||++|+|+|||++.|+|||++|||+++||++|+.+..
T Consensus 4 ~g~~v~aSP~aRklA~e~gIdl~~I~GTG~~GRItk~DV~~~i~~~~ 50 (58)
T 1zwv_A 4 KGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT 50 (58)
T ss_dssp CCCCCCSCHHHHHHHHHTTCCSSSSSSCCSSSCCCHHHHHHHHHSCC
T ss_pred CCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 78864469999999999399887865769999480999999997066
No 37
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.77 E-value=5.4e-10 Score=84.08 Aligned_cols=46 Identities=30% Similarity=0.459 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 1111111222211111111220111001232112221000011101
Q gi|254781052|r 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRS 168 (436)
Q Consensus 123 ~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~ 168 (436)
+..++++||.||++|+|+|||+++|.|||++|||+|+||++|+++.
T Consensus 3 p~~~v~asP~arkla~e~gidl~~i~GTG~~GrItk~Dv~~~~~~~ 48 (49)
T 1w85_I 3 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGG 48 (49)
T ss_dssp ---CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC-
T ss_pred CCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCC
T ss_conf 9986101999999999949988887566999948199999999756
No 38
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.73 E-value=1.4e-09 Score=81.35 Aligned_cols=45 Identities=33% Similarity=0.521 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHC
Q ss_conf 111111122221111111122011100123211222100001110
Q gi|254781052|r 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167 (436)
Q Consensus 123 ~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~ 167 (436)
+.....+||++|++|+|+|||+++|+|||++|||+|+||++|+++
T Consensus 6 ~~~~~~~sPa~rkla~e~gidl~~I~gtG~~GrItk~DV~~~i~~ 50 (51)
T 1bal_A 6 EQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 50 (51)
T ss_dssp CCSSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSCC
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf 667886199999999993998988817899994919999999973
No 39
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.72 E-value=7.3e-10 Score=83.19 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 111111112222111111112201110012321122210000111012
Q gi|254781052|r 122 DQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSE 169 (436)
Q Consensus 122 ~~~~~~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~~~~ 169 (436)
+...++.+||+||++|+|+|||+++|.|||++|||+|+||++|+....
T Consensus 5 p~~~~~~~sPaarkla~e~gidl~~I~gTG~~GRI~k~DV~~~i~~~~ 52 (64)
T 2f60_K 5 PGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQ 52 (64)
T ss_dssp TTCHHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHCCCCHHHCCCCCCCCEEEHHHHHHHHHHCC
T ss_conf 998888529999999999499843325679998295999999998334
No 40
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8}
Probab=98.70 E-value=1.3e-09 Score=81.61 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 1112222111111112201110012321122210000111
Q gi|254781052|r 127 MPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166 (436)
Q Consensus 127 ~~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~ 166 (436)
+.+||++|++|+|+|||+++|.|||++|||+++||++|+.
T Consensus 1 i~AsP~arklA~e~gidl~~i~GtG~~GRItk~DV~~~~~ 40 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9168999999999499998880789999581999999983
No 41
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8}
Probab=98.66 E-value=1.6e-09 Score=80.92 Aligned_cols=38 Identities=45% Similarity=0.829 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 12222111111112201110012321122210000111
Q gi|254781052|r 129 HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166 (436)
Q Consensus 129 asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~~ 166 (436)
+||++|++|+|+|||+++|.|||++|||+|+||++|+.
T Consensus 2 AsPaarkla~e~gidl~~i~GsG~~GRItk~DV~~~i~ 39 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 89899999999399998871789999583999999982
No 42
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8}
Probab=98.66 E-value=1.7e-09 Score=80.72 Aligned_cols=38 Identities=37% Similarity=0.609 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 11222211111111220111001232112221000011
Q gi|254781052|r 128 PHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAI 165 (436)
Q Consensus 128 ~asP~ar~la~e~gidls~v~gtG~~GrI~k~Dv~~~~ 165 (436)
|+||++|++|+|+|||+++|+|||++|||+++||++|.
T Consensus 1 pAsP~arklA~e~gidl~~V~gTG~~GrItk~DV~~~~ 38 (40)
T 2eq8_C 1 PAAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 97989999999939989888078999969499999873
No 43
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.20 E-value=3e-06 Score=59.31 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=46.8
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCE-----------------------------EEEECCCCCEEEEEEECCCCE
Q ss_conf 799999982688783489749999527624-----------------------------566678787899997078888
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVT-----------------------------VEVPSPVSGKLHEMSVAKGDT 84 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~-----------------------------~evesp~~G~l~~i~v~eGd~ 84 (436)
.|.|.++++++||.|++||+|++++.+.+- ..|.||++|++.+..+++|+.
T Consensus 9 ~G~V~~i~v~eG~~V~kGq~L~~ld~~~a~~~~~r~~~l~~~~~vS~~~~d~a~~~L~~~~I~AP~~G~V~~~~~~~G~~ 88 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY 88 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred CEEEEEEECCCCCEECCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCE
T ss_conf 88999998889899889989998762111335545544200230012326999975517899889887999898799998
Q ss_pred EEECC-CEEEEEE
Q ss_conf 55177-1189983
Q gi|254781052|r 85 VTYGG-FLGYIVE 96 (436)
Q Consensus 85 v~VG~-~i~~i~~ 96 (436)
|..|+ +|+.|..
T Consensus 89 V~~g~~~l~~I~~ 101 (116)
T 2k32_A 89 VSASTTELVRVTN 101 (116)
T ss_dssp ECTTTSCCEEEEC
T ss_pred ECCCCCEEEEEEC
T ss_conf 8899954899977
No 44
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.43 E-value=0.00016 Score=47.82 Aligned_cols=45 Identities=33% Similarity=0.392 Sum_probs=38.7
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 7999999826887834897499995276245666787878999970
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v 79 (436)
+..-+++ .++|+.|++|++++.||+.|++.++.||.+|.|.++.-
T Consensus 37 ~i~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~vv~vN~ 81 (131)
T 1hpc_A 37 EVVFVEL-PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT 81 (131)
T ss_dssp SEEEEEC-CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred CEEEEEC-CCCCCEEECCCEEEEEEECCCEEEEEECCCEEEEEECH
T ss_conf 7799978-99987752797289999845100133024349998515
No 45
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.41 E-value=0.0002 Score=47.21 Aligned_cols=44 Identities=30% Similarity=0.495 Sum_probs=38.2
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 999999826887834897499995276245666787878999970
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v 79 (436)
..-++ +.++|+.|++||++++||+.|++.++.||.+|.|.++.-
T Consensus 38 i~~v~-lp~~g~~v~~g~~~~~vEs~k~~~~i~sPvsG~Vv~vN~ 81 (128)
T 1onl_A 38 VVYVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL 81 (128)
T ss_dssp EEEEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred EEEEE-CCCCCCHHCCCCEEEEEEECCEEEECCCCCCCEEEEEHH
T ss_conf 38997-799985210796179999754053013897725898705
No 46
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=97.38 E-value=0.00058 Score=44.20 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=35.6
Q ss_pred CEEEEEECC-CCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 749999527-624566678787899997078888551771189983
Q gi|254781052|r 52 EILVELETD-KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 52 d~i~eVETD-Ka~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
..-..++.+ .-+.++.++.+|.|.++++++||.|.-|++|+.|..
T Consensus 45 ~~~G~v~~~p~~~~~l~~~v~G~V~~i~v~~G~~V~kGq~L~~id~ 90 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred EEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCEEEEECH
T ss_conf 9999999775579999677778999999899199889998999985
No 47
>1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=97.36 E-value=0.00023 Score=46.80 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=38.7
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 79999998268878348974999952762456667878789999707
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~ 80 (436)
+..-++ +.++|+.|++|++++.||+.|++.++-||++|.|.++.-+
T Consensus 46 ~i~~v~-lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~Vv~vN~~ 91 (136)
T 1zko_A 46 DVVYVD-LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEK 91 (136)
T ss_dssp SEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGG
T ss_pred CEEEEE-CCCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEHHH
T ss_conf 857997-7999988655976899998661577750354599986564
No 48
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.36 E-value=0.00024 Score=46.70 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 79999998268878348974999952762456667878789999707
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~ 80 (436)
+..-+++ .++|+.|++||+++.||+.|++.++-||.+|+|.++.-.
T Consensus 55 ~I~~v~l-p~~g~~v~~g~~~~~IEs~K~v~~i~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 55 DLVFIDL-PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp SEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CEEEEEE-CCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEECHH
T ss_conf 9899994-588767835970899984455886430354699986044
No 49
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.34 E-value=0.00026 Score=46.55 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=38.4
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 9999998268878348974999952762456667878789999707
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~ 80 (436)
..-++ +..+|+.|++||+++.||+.|++.++.||.+|.|.++.-+
T Consensus 61 I~~v~-lp~~g~~v~~gd~~~~vEs~K~~~~i~sPvsG~Vv~vN~~ 105 (155)
T 3hgb_A 61 VVFVQ-LPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD 105 (155)
T ss_dssp EEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred EEEEE-ECCCCCEEECCCEEEEEEECCEEECCCCCCCCEEEEECHH
T ss_conf 79998-1579967607976899998340201027836357885254
No 50
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A
Probab=97.33 E-value=0.00027 Score=46.40 Aligned_cols=46 Identities=28% Similarity=0.397 Sum_probs=39.5
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 79999998268878348974999952762456667878789999707
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~ 80 (436)
+..-+++ .++|+.|++||++++||+.|++.++.||.+|.|.++.-.
T Consensus 33 ~i~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~~N~~ 78 (125)
T 3klr_A 33 DVVYCSL-PEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp SEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CEEEEEC-CCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEHHH
T ss_conf 8699937-999989854860799997323667510344256675043
No 51
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.31 E-value=0.0003 Score=46.14 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=39.9
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 79999998268878348974999952762456667878789999707
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~ 80 (436)
+..-+++ .++|+.|++|++++.||+.|++.++-||.+|.|.++.-.
T Consensus 38 ~i~~v~l-p~~g~~v~~g~~~~~vEs~K~v~~i~sPvsG~Vv~vN~~ 83 (128)
T 3a7l_A 38 DMVFVDL-PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDA 83 (128)
T ss_dssp SEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CEEEEEC-CCCCCEECCCCCEEEEEECCEEECCCCCCCCEEEEECHH
T ss_conf 7589977-999877127970355540350311125756258875254
No 52
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.17 E-value=0.0014 Score=41.71 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=5.2
Q ss_pred CCCHHHHCCCCCCC
Q ss_conf 12201110012321
Q gi|254781052|r 141 GLSPSDIKGTGKRG 154 (436)
Q Consensus 141 gidls~v~gtG~~G 154 (436)
|.|++..-+..++|
T Consensus 111 ~~nlNR~FPg~~~G 124 (354)
T 3cdx_A 111 GRDINRCFPGDPRG 124 (354)
T ss_dssp CCCGGGSTTCCTTS
T ss_pred CCCHHHHCCCCCCC
T ss_conf 98888829999999
No 53
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=97.07 E-value=0.00015 Score=48.05 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=38.9
Q ss_pred ECCCCEECCCCEEEEEECCC-CEEEEECCCCCEEEEEE-ECCCCEEEECCCEEEEEE
Q ss_conf 26887834897499995276-24566678787899997-078888551771189983
Q gi|254781052|r 42 KEIGESVEIGEILVELETDK-VTVEVPSPVSGKLHEMS-VAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 42 v~~Gd~V~~gd~i~eVETDK-a~~evesp~~G~l~~i~-v~eGd~v~VG~~i~~i~~ 96 (436)
++.++-...-...-.|+.|- -...+.++++|.+.+++ +.+||.|.-|++|+.|..
T Consensus 99 v~~~~~~~~~~~~G~V~~d~~~~~~v~a~~~G~I~~l~v~~~Gd~VkkGq~L~~lds 155 (407)
T 3h9i_A 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (407)
T ss_dssp CEEECCEEEEEEEEEEEECGGGCEEEEEESCCCCBCCCSCCSSCEESTTCCCEEEEC
T ss_pred EEEEEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEECCCCEEEEECC
T ss_conf 898631059999899998876089996566779999950689998858988999878
No 54
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=96.51 E-value=0.0034 Score=39.11 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=14.2
Q ss_pred CCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 8789999707888855177118998
Q gi|254781052|r 71 SGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 71 ~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
+|+|.+|++++||.|..|++|+.|+
T Consensus 18 ~g~i~~w~v~~Gd~V~~Gd~l~~iE 42 (93)
T 1k8m_A 18 EVTVKEWYVKEGDTVSQFDSICEVQ 42 (93)
T ss_dssp CEEEEEECCCTTCEECSSSCCEEEE
T ss_pred EEEEEEEEECCCCEECCCCEEEEEE
T ss_conf 5999999908979998899899998
No 55
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.68 E-value=0.011 Score=35.89 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=31.5
Q ss_pred CEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 24566678787899997078888551771189983
Q gi|254781052|r 62 VTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 62 a~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
...+|.||..|++.++++++||.|..|++|++|+.
T Consensus 7 ~~~~i~ap~~G~i~~~~V~~Gd~V~~Gq~l~~iEa 41 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp CSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEE
T ss_pred CCCEEECCCCEEEEEEECCCCCEECCCCEEEEEEE
T ss_conf 89969899995999998389899869998999994
No 56
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.55 E-value=0.014 Score=35.06 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 78789999707888855177118998
Q gi|254781052|r 70 VSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 70 ~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
.+|+|.+|++++||.|..|++|+.|+
T Consensus 11 ~~g~i~~~~v~~Gd~V~~G~~l~~iE 36 (79)
T 1iyu_A 11 GDGEVIELLVKTGDLIEVEQGLVVLE 36 (79)
T ss_dssp SEEEEEEECCCTTCBCCSSSEEEEEE
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEE
T ss_conf 96899999827979990899899999
No 57
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.44 E-value=0.012 Score=35.41 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=17.8
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEE
Q ss_conf 7999999826887834897499995
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELE 58 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVE 58 (436)
.|+|.+|++++||.|+.||+|+++|
T Consensus 56 ~G~V~~i~v~~G~~V~~G~~L~~ie 80 (80)
T 1bdo_A 56 SGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CEEEEEEEECCCCEECCCCEEEEEC
T ss_conf 9899899868979989999999979
No 58
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=95.18 E-value=0.0085 Score=36.50 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=30.9
Q ss_pred CEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 24566678787899997078888551771189983
Q gi|254781052|r 62 VTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 62 a~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
-.++|-|+.+|+|.++++++|+.|.-|++|+.|..
T Consensus 21 ~~v~I~a~v~G~V~~i~v~~G~~VkkG~~L~~ld~ 55 (277)
T 2f1m_A 21 RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred EEEEEEEECCEEEEEEECCCCCEECCCCEEEEECC
T ss_conf 99999954578999998799399889999999885
No 59
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.17 E-value=0.011 Score=35.79 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=32.2
Q ss_pred ECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 527624566678787899997078888551771189983
Q gi|254781052|r 58 ETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 58 ETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
|.|. ..+.||..|+|.+|++++||.|..|++|+.++.
T Consensus 2 e~dp--~~v~ap~~G~i~~~~V~~Gd~V~~G~~l~~iEa 38 (84)
T 2kcc_A 2 ENDP--TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp CCCT--TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred CCCC--CEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 8899--879889885999999579899917986999984
No 60
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=95.08 E-value=0.013 Score=35.36 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 27624566678787899997078888551771189983
Q gi|254781052|r 59 TDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 59 TDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
++...-.+-||..|+|.+|++++||.|..|++|+.|+.
T Consensus 10 ~~~~~~~~~aPm~G~i~~~~v~~Gd~V~~g~~l~~vEt 47 (99)
T 2ejm_A 10 SQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp SCSCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEES
T ss_pred CCCCCCCEECCCCEEEEEEECCCCCEECCCCEEEEEEC
T ss_conf 65678923388996999998289899868998999973
No 61
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=94.99 E-value=0.022 Score=33.74 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=28.6
Q ss_pred EECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 6678787899997078888551771189983
Q gi|254781052|r 66 VPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 66 vesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
|.+|..|.|.+|++++||.|.-|++|+.|+.
T Consensus 2 v~~~m~G~i~~~~v~~Gd~V~~g~~l~~ie~ 32 (72)
T 1z6h_A 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILES 32 (72)
T ss_dssp EECCSSEEEEEECCCTTCEECTTCEEEEEEE
T ss_pred EECCCCEEEEEEECCCCCEECCCCEEEEEEC
T ss_conf 8053878999999279899907989999981
No 62
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=94.93 E-value=0.024 Score=33.57 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.4
Q ss_pred EEEECCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 5666787878999970788885517711899834
Q gi|254781052|r 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 64 ~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.-+.||..|++.+|++++||.|.-|++|+.|+..
T Consensus 6 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE~~ 39 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEEECCCCCEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 9997999979999994899999389889999935
No 63
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.92 E-value=0.011 Score=35.66 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=16.5
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 7999999826887834897499995276
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETDK 61 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDK 61 (436)
.|+|.+|++++||.|+.|++|+.+|++.
T Consensus 47 ~G~v~~i~v~~Gd~V~~G~~l~~ie~~~ 74 (85)
T 2k7v_A 47 AGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred CEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 9899899968989979999999997488
No 64
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.018 Score=34.32 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=35.0
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 89749999527624566678787899997078888551771189983
Q gi|254781052|r 50 IGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 50 ~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
.+-.+++=+.|. -.+.||..|+|.+|++++||.|.-|++|+.|+.
T Consensus 6 s~t~~~~~~~dp--~~v~ap~~G~i~~~~V~~Gd~V~~Gd~l~~iEt 50 (100)
T 2dn8_A 6 SGTCVFEKENDP--TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCT--TEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCCEEEECCCCC--CEEECCCCEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 743786878899--888789986999999379899858997999982
No 65
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.63 E-value=0.014 Score=35.14 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=32.3
Q ss_pred EEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 99527624566678787899997078888551771189983
Q gi|254781052|r 56 ELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 56 eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
.|+.+ -..+|.++.+|+|.++++++||.|.-|++|+.|..
T Consensus 37 ~v~~~-~~~~v~~~v~G~V~~v~V~~Gd~VkkGd~L~~ld~ 76 (369)
T 1vf7_A 37 RTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp ECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEE-EEEEEEEECCEEEEEEECCCCCEECCCCEEEEECC
T ss_conf 99970-89999954578999998899599889998999886
No 66
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.58 E-value=0.017 Score=34.58 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=14.5
Q ss_pred CCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 8789999707888855177118998
Q gi|254781052|r 71 SGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 71 ~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
++.+.+|++++||.|..|++|+.|+
T Consensus 14 ~~~i~~~~v~~Gd~V~~g~~l~~iE 38 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVE 38 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEE
T ss_pred EEEEEEEEECCCCEECCCCEEEEEE
T ss_conf 2899999917979998999899999
No 67
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=94.52 E-value=0.026 Score=33.31 Aligned_cols=42 Identities=38% Similarity=0.496 Sum_probs=34.0
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 9999527624566678787899997078888551771189983
Q gi|254781052|r 54 LVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 54 i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
-..|+..+ .+.|.++.+|.|.++++++|+.|.-|++|+.|..
T Consensus 23 ~G~v~~~~-~~~v~a~~~G~V~~v~v~~G~~V~~G~~L~~id~ 64 (341)
T 3fpp_A 23 TGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp EEEEEESS-EEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEEEEEE-EEEEECCCCEEEEEEECCCCCEECCCCEEEEECH
T ss_conf 99999808-9999844778999999899199889998999881
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=94.14 E-value=0.053 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.6
Q ss_pred CEEEEEEEEECCCCEECCCCEEEEEECCCC
Q ss_conf 079999998268878348974999952762
Q gi|254781052|r 33 NEATVGTWLKEIGESVEIGEILVELETDKV 62 (436)
Q Consensus 33 ~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa 62 (436)
..|+|.++++++||.|++||+|+++.+...
T Consensus 38 ~~G~V~~v~v~~G~~V~~G~~L~~id~~~~ 67 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQA 67 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHH
T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHHHH
T ss_conf 778999999899199889998999881999
No 69
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=94.07 E-value=0.096 Score=29.56 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=12.9
Q ss_pred EECCCCCEEEEEEECCCCEEEECCCEEEE
Q ss_conf 66787878999970788885517711899
Q gi|254781052|r 66 VPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 (436)
Q Consensus 66 vesp~~G~l~~i~v~eGd~v~VG~~i~~i 94 (436)
..-|+..+| ++++|+.|+-|+.||.+
T Consensus 56 y~vpyGa~L---~VkdG~~Vk~g~~la~W 81 (190)
T 2auk_A 56 YKVPYGAVL---AKGDGEQVAGGETVANW 81 (190)
T ss_dssp EECCTTCEE---SSCTTCEECTTCEEEEC
T ss_pred EECCCCCEE---EECCCCEECCCCEEEEE
T ss_conf 886867589---98698997389899986
No 70
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=93.94 E-value=0.019 Score=34.24 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=14.1
Q ss_pred ECCCCEECCCCEEEEEEC--CCCEEEEECC
Q ss_conf 268878348974999952--7624566678
Q gi|254781052|r 42 KEIGESVEIGEILVELET--DKVTVEVPSP 69 (436)
Q Consensus 42 v~~Gd~V~~gd~i~eVET--DKa~~evesp 69 (436)
-..|..|.-|+--|.++. -|..-|-|+|
T Consensus 235 d~~g~~~~~~~r~cs~q~~~qk~ie~~p~~ 264 (1165)
T 2qf7_A 235 DTHGNVVHLFERDCSVQRRNQKVVERAPAP 264 (1165)
T ss_dssp CTTSCEEEEEEEEEEEEETTEEEEEEESCT
T ss_pred CCCCCEEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 188988997178888875886235677798
No 71
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=93.94 E-value=0.051 Score=31.34 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=4.9
Q ss_pred CCEECCCCEEEEEE
Q ss_conf 87834897499995
Q gi|254781052|r 45 GESVEIGEILVELE 58 (436)
Q Consensus 45 Gd~V~~gd~i~eVE 58 (436)
|..|..++..|.++
T Consensus 222 g~~i~~~~~~~~~~ 235 (1150)
T 3hbl_A 222 GNIVHLFERDCSVQ 235 (1150)
T ss_dssp SCEEEEEEEEEEEE
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899633467666
No 72
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=93.84 E-value=0.031 Score=32.82 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=29.7
Q ss_pred EEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 66678787899997078888551771189983
Q gi|254781052|r 65 EVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 65 evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
-+.||..|.+.++++++||.|.-|++|+.|+.
T Consensus 27 ~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEs 58 (94)
T 2jku_A 27 VLRSPMPGVVVAVSVKPGDAVAEGQEICVIEA 58 (94)
T ss_dssp CCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC
T ss_pred EEECCCCCEEEEEECCCCCEECCCCEEEEEEC
T ss_conf 89899996898998189999958987999980
No 73
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=93.79 E-value=0.045 Score=31.74 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=25.0
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECC
Q ss_conf 799999982688783489749999527
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETD 60 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETD 60 (436)
.|.|.+|++++||.|++||+|+++.+.
T Consensus 30 ~G~V~~i~v~~G~~VkkG~~L~~ld~~ 56 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred CEEEEEEECCCCCEECCCCEEEEECCH
T ss_conf 789999987993998899999998858
No 74
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.76 E-value=0.054 Score=31.17 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 78789999707888855177118998
Q gi|254781052|r 70 VSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 70 ~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
.+|+|.+|++++||.|.-|++|+.++
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vE 39 (79)
T 1ghj_A 14 ADGTVATWHKKPGEAVKRDELIVDIE 39 (79)
T ss_dssp SCEEECCCSSCTTSEECSSCEEEEEE
T ss_pred CEEEEEEEECCCCCEEECCCEEEEEE
T ss_conf 46999999927989990899899999
No 75
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=93.13 E-value=0.078 Score=30.14 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=25.6
Q ss_pred CEEEEEEEEECCCCEECCCCEEEEEECC
Q ss_conf 0799999982688783489749999527
Q gi|254781052|r 33 NEATVGTWLKEIGESVEIGEILVELETD 60 (436)
Q Consensus 33 ~Eg~Iv~Wlv~~Gd~V~~gd~i~eVETD 60 (436)
-.|+|.+|++++||.|++||+|+++++.
T Consensus 64 v~G~V~~i~v~~G~~V~kGq~L~~id~~ 91 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHH
T ss_conf 7789999998991998899989999859
No 76
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=92.82 E-value=0.093 Score=29.64 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=30.5
Q ss_pred EEEECCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 566678787899997078888551771189983
Q gi|254781052|r 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 64 ~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
+.|-+..+|+|.++++++|+.|.-|++|+.|+.
T Consensus 2 V~i~~~v~G~V~~i~v~eG~~V~kGq~L~~ld~ 34 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQ 34 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEEC
T ss_pred CEEECCCCEEEEEEECCCCCEECCCCEEEEEEC
T ss_conf 389675788999998889899889989998762
No 77
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.31 E-value=0.12 Score=28.79 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0123211222100
Q gi|254781052|r 149 GTGKRGQILKSDV 161 (436)
Q Consensus 149 gtG~~GrI~k~Dv 161 (436)
|..-..||..+|.
T Consensus 332 Ghaie~Ri~AEdp 344 (681)
T 3n6r_A 332 GWAIENRLYAEDP 344 (681)
T ss_dssp SEEEEEEEESEEG
T ss_pred CCCCCCEEEEECC
T ss_conf 7314550000265
No 78
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=92.26 E-value=0.032 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=24.1
Q ss_pred CCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 8787899997078888551771189983
Q gi|254781052|r 69 PVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 69 p~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
..++.+.+|++++||.|.-|++|+.|+.
T Consensus 13 ~~~~~I~~~~v~~Gd~V~~Gd~l~~iEt 40 (81)
T 1gjx_A 13 HENVDIIAVEVNVGDTIAVDDTLITLET 40 (81)
T ss_dssp CSSEEEEEECCCSSCBCCSSCCCEEEEC
T ss_pred CCEEEEEEEECCCCCEEECCCEEEEEEE
T ss_conf 7489999998289799908998999993
No 79
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=92.15 E-value=0.085 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=0.0
Q ss_pred EEECCCCCEEEEEEECCCCEEEECCCEEEEE
Q ss_conf 6667878789999707888855177118998
Q gi|254781052|r 65 EVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 65 evesp~~G~l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
+|.||..|.|.+++|++||.|.-|++|++|+
T Consensus 651 ~V~APmpG~V~~v~V~~Gd~V~~G~~l~vlE 681 (718)
T 3bg3_A 651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp CEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred EECCCCCCEEEEEEECCCCEECCCCEEEEEE
T ss_conf 4338999437999969999879999999997
No 80
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=91.54 E-value=0.11 Score=29.22 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.6
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECC
Q ss_conf 799999982688783489749999527
Q gi|254781052|r 34 EATVGTWLKEIGESVEIGEILVELETD 60 (436)
Q Consensus 34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETD 60 (436)
.|+|.+|++++||.|++||+|+++.+.
T Consensus 51 ~G~V~~v~V~~Gd~VkkGd~L~~ld~~ 77 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred CEEEEEEECCCCCEECCCCEEEEECCH
T ss_conf 789999988995998899989998868
No 81
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.52 E-value=0.087 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 787899997078888551771189983
Q gi|254781052|r 70 VSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 70 ~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
.+|+|.+|++++||.|..|++|+.|+.
T Consensus 20 ~eg~i~~W~v~~Gd~V~~gd~l~evEt 46 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIET 46 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEEC
T ss_pred CEEEEEEEEECCCCEEECCCEEEEEEC
T ss_conf 379999999089999938998999985
No 82
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=90.63 E-value=0.11 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 8787899997078888551771189983
Q gi|254781052|r 69 PVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 69 p~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
-.+|+|.+|++++||.|..|++|+.|+.
T Consensus 19 ~~eg~i~~W~v~~Gd~V~~gd~l~evET 46 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVET 46 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEEC
T ss_pred CCEEEEEEEEECCCCEEECCCEEEEEEC
T ss_conf 6569998999369999807998999983
No 83
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=90.55 E-value=0.14 Score=28.42 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 78787899997078888551771189983
Q gi|254781052|r 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 68 sp~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
+-.+|+|.+|++++||.|..|++|+.|+.
T Consensus 38 ~~~Eg~I~~W~vk~GD~V~~gd~L~evET 66 (128)
T 1y8o_B 38 TMTMGTVQRWEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp TCSEEEEEEECSCTTCEECTTCEEEEEEC
T ss_pred CCCEEEEEEEEECCCCEEECCCEEEEEEC
T ss_conf 83179998999579999808997999982
No 84
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=90.33 E-value=0.15 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 7878999970788885517711899834
Q gi|254781052|r 70 VSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 70 ~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.+|+|.+|++++||.|..|++|+.++..
T Consensus 18 ~eg~i~~W~v~~Gd~V~~gd~l~evEtd 45 (87)
T 3crk_C 18 TMGTVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp CEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred CEEEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 5799999863999999789979999907
No 85
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=90.32 E-value=0.043 Score=31.88 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 787878999970788885517711899834
Q gi|254781052|r 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 68 sp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
+-.+|+|.+|++++||.|..|++|+.|+..
T Consensus 13 ~~~eg~i~~W~~~~Gd~V~~gd~l~evETD 42 (428)
T 3dva_I 13 GIHEGEIVKWFVKPGDEVNEDDVLCEVQND 42 (428)
T ss_dssp ------------------------------
T ss_pred CCEEEEEEEEEECCCCEECCCCEEEEEECC
T ss_conf 840699999992899985899919999848
No 86
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.06 E-value=0.26 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=17.3
Q ss_pred EEEECCCCCEEEEEEECCCCEE----EECCCEEEE
Q ss_conf 5666787878999970788885----517711899
Q gi|254781052|r 64 VEVPSPVSGKLHEMSVAKGDTV----TYGGFLGYI 94 (436)
Q Consensus 64 ~evesp~~G~l~~i~v~eGd~v----~VG~~i~~i 94 (436)
.+|-||.+|.+.. +-+..|.+ -+|.-+|++
T Consensus 8 ~~i~APv~G~vi~-l~~V~D~vFs~k~mG~G~aI~ 41 (154)
T 2gpr_A 8 LKVLAPCDGTIIT-LDEVEDEVFKERMLGDGFAIN 41 (154)
T ss_dssp EEEECSSSEEEEC-GGGSSCHHHHTTSSCEEEEEE
T ss_pred EEEEECCCCEEEE-CCCCCCHHHCCCCCCCEEEEE
T ss_conf 0999647738988-132867363568801629999
No 87
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=88.57 E-value=0.48 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=15.1
Q ss_pred EEECCCCCEEEEEEECCCCEE----EECCCEEEE
Q ss_conf 666787878999970788885----517711899
Q gi|254781052|r 65 EVPSPVSGKLHEMSVAKGDTV----TYGGFLGYI 94 (436)
Q Consensus 65 evesp~~G~l~~i~v~eGd~v----~VG~~i~~i 94 (436)
.+-||.+|.+.. +-+..|.+ -.|.-+|++
T Consensus 14 ~i~aPv~G~vi~-L~~V~D~vFs~~~mG~G~aI~ 46 (162)
T 1ax3_A 14 VFVSPITGEIHP-ITDVPDQVFSGKMMGDGFAIL 46 (162)
T ss_dssp SCCCCCSEEEEE-GGGSSSHHHHTCTTSEEEEEE
T ss_pred EEEECCCCEEEE-CCCCCCHHHCCCCCCCCEEEE
T ss_conf 999348868988-231977463467802748998
No 88
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=87.92 E-value=0.08 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.8
Q ss_pred ECCCCCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 6787878999970788885517711899834
Q gi|254781052|r 67 PSPVSGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 67 esp~~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
++-.+|.|.+|++++||.|..|++|+.|+..
T Consensus 13 e~~~eg~I~~Wlvk~GD~V~~gd~L~evETD 43 (229)
T 1zy8_K 13 PTMEEGNIVKWLKKEGEAVSAGDALCEIETD 43 (229)
T ss_dssp -------------------------------
T ss_pred CCCCEEEEEEEEECCCCEECCCCEEEEEEEC
T ss_conf 9862699989981899997799979999928
No 89
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=87.23 E-value=0.35 Score=25.80 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=17.2
Q ss_pred EEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 8999970788885517711899834
Q gi|254781052|r 73 KLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 73 ~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
+-.++++++|+.+.-|++|+.|...
T Consensus 108 ~~v~~~~~dG~~v~~g~~i~~i~G~ 132 (320)
T 3paj_A 108 VSIEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEE
T ss_pred CEEEEECCCCCEEECCCEEEEEECC
T ss_conf 4698881899987389689998131
No 90
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=86.52 E-value=0.9 Score=23.13 Aligned_cols=41 Identities=32% Similarity=0.280 Sum_probs=25.7
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEE-EECCCCCEEE
Q ss_conf 9999998268878348974999952762456-6678787899
Q gi|254781052|r 35 ATVGTWLKEIGESVEIGEILVELETDKVTVE-VPSPVSGKLH 75 (436)
Q Consensus 35 g~Iv~Wlv~~Gd~V~~gd~i~eVETDKa~~e-vesp~~G~l~ 75 (436)
|--+--.+.+||.|.+||.|+-+.|-|-.+- +-||++|++.
T Consensus 109 G~~v~~i~~~G~rV~~gd~lA~i~T~KGEVR~i~spv~G~Vv 150 (169)
T 3d4r_A 109 GYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVI 150 (169)
T ss_dssp SSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEE
T ss_pred CEEEEEECCCCCEECCCCEEEEEEECCCCEEEECCCCCEEEE
T ss_conf 569999757553761487279998268507994499857999
No 91
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=85.36 E-value=0.075 Score=30.26 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCCCEEEEEEECCCCEEEECCCEEEEEE
Q ss_conf 8787899997078888551771189983
Q gi|254781052|r 69 PVSGKLHEMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 69 p~~G~l~~i~v~eGd~v~VG~~i~~i~~ 96 (436)
..+|+|.+|++++||.|..|++|+.|+.
T Consensus 14 ~~~g~i~~w~v~~Gd~V~~gd~l~eiEt 41 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIET 41 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred CCEEEEEEEEECCCCEECCCCEEEEEEC
T ss_conf 7589999999079899879998999993
No 92
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=84.49 E-value=0.78 Score=23.55 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=18.8
Q ss_pred CCEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 878999970788885517711899834
Q gi|254781052|r 71 SGKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 71 ~G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.|.=..+++++|+.+.-|++|+.|...
T Consensus 69 ~~~~v~~~~~dG~~v~~g~~il~i~G~ 95 (284)
T 1qpo_A 69 NGYRVLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp TSEEEEEECCTTCEECTTCEEEEEEEE
T ss_pred CCEEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 673798882889998648679999988
No 93
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=84.09 E-value=0.55 Score=24.56 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCEEEEEECCCEE-EEEEECCEEEEE
Q ss_conf 4325989999987653101222235720025840888615232621011201588707898435135-678888957895
Q gi|254781052|r 318 ADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQE-RPIVEDGQIVIR 396 (436)
Q Consensus 318 a~~~~l~~i~~~~~~l~~~ar~~~l~~~el~ggt~tiSNlG~~G~~~~~piI~ppq~aIl~vg~i~~-~~v~~~g~~~~~ 396 (436)
.|.+++.++.+.++.+.++...-++ +-+ |-++.+|+..|.... +=.+++|++.. .|.
T Consensus 223 LDn~s~e~l~~~v~~l~~~~~~v~i---eaS-GGI~~~ni~~ya~~G---------VD~is~G~lt~~a~~--------- 280 (299)
T 2jbm_A 223 LDNFKPEELHPTATVLKAQFPSVAV---EAS-GGITLDNLPQFCGPH---------IDVISMGMLTQAAPA--------- 280 (299)
T ss_dssp EESCCHHHHHHHHHHHHHHCTTSEE---EEE-SSCCTTTHHHHCCTT---------CCEEECTHHHHSCCC---------
T ss_pred EECCCHHHHHHHHHHHHCCCCCEEE---EEE-CCCCHHHHHHHHHCC---------CCEEECCHHHCCCCC---------
T ss_conf 8088999999999998464897699---998-999999999999729---------899982965459986---------
Q ss_pred EEEEEEEEEEEEEEEHHHHHHH
Q ss_conf 4889999731011402889999
Q gi|254781052|r 397 PMMYLALSYDHRIVDGKEAVTF 418 (436)
Q Consensus 397 ~~~~ltls~DHRvidGa~aa~F 418 (436)
+-++.|=...+|+..|+|
T Consensus 281 ----~D~sl~i~~~~~~p~~k~ 298 (299)
T 2jbm_A 281 ----LDFSLKLFAKEVAPVPKI 298 (299)
T ss_dssp ----CCEEEEEEEEC-------
T ss_pred ----CCEEEEEEECCCCCCCCC
T ss_conf ----431799775588777777
No 94
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=84.05 E-value=0.55 Score=24.54 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCEEEEEEECCCCEEE----ECCCEEEEE
Q ss_conf 62456667878789999707888855----177118998
Q gi|254781052|r 61 KVTVEVPSPVSGKLHEMSVAKGDTVT----YGGFLGYIV 95 (436)
Q Consensus 61 Ka~~evesp~~G~l~~i~v~eGd~v~----VG~~i~~i~ 95 (436)
....+|-||.+|.+.. +-+..|.+- +|.-+|++-
T Consensus 10 ~~~i~v~APv~G~vi~-L~~v~D~vFs~~~~G~G~AI~P 47 (161)
T 1f3z_A 10 TGTIEIIAPLSGEIVN-IEDVPDVVFAEKIVGDGIAIKP 47 (161)
T ss_dssp --CEEEECSSCEEEEE-GGGSSSHHHHTTSSCEEEEEEE
T ss_pred CCCEEEEECCCCEEEE-CCCCCCHHHHCCCCCCEEEEEC
T ss_conf 8968999636727988-3309885882678126299983
No 95
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=83.95 E-value=0.64 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=16.4
Q ss_pred EEEEECCCCEEEECCCEEEEEEC
Q ss_conf 99970788885517711899834
Q gi|254781052|r 75 HEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 75 ~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.++++++|+.|.-|++|+.+...
T Consensus 74 v~~~~~dG~~v~~g~~i~~i~G~ 96 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEECCCCCEECCCCEEEEEEEC
T ss_conf 98784899886589899999977
No 96
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=83.26 E-value=0.94 Score=23.00 Aligned_cols=22 Identities=9% Similarity=-0.115 Sum_probs=16.1
Q ss_pred EEEECCCCEEEECCCEEEEEEC
Q ss_conf 9970788885517711899834
Q gi|254781052|r 76 EMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 76 ~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
.+++++|+.+.-|++|+.|...
T Consensus 61 ~~~~~dG~~v~~g~~Il~i~G~ 82 (273)
T 2b7n_A 61 VQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp EEECCTTCEECTTCEEEEEEEE
T ss_pred EEEECCCCEEECCCEEEEEEEH
T ss_conf 8973376375089899999860
No 97
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=82.78 E-value=0.76 Score=23.62 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 78999970788885517711899834
Q gi|254781052|r 72 GKLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 72 G~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
++-.++++++|+.+.-|++|+.+...
T Consensus 85 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 110 (298)
T 3gnn_A 85 SIEVDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp TCEEEESSCTTCEECTTCEEEEEEEE
T ss_pred CCEEEEECCCCCEEECCCEEEEEEEC
T ss_conf 62687664889896379889999967
No 98
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=82.30 E-value=0.83 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=13.9
Q ss_pred EEEECCCCEEEECCCEEEEEE
Q ss_conf 997078888551771189983
Q gi|254781052|r 76 EMSVAKGDTVTYGGFLGYIVE 96 (436)
Q Consensus 76 ~i~v~eGd~v~VG~~i~~i~~ 96 (436)
++++++|+.+.-|++|+.+..
T Consensus 88 ~~~~~dG~~v~~g~~i~~i~G 108 (296)
T 1qap_A 88 TWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EESCCTTCEECTTCEEEEEEE
T ss_pred EEECCCCCEEECCCEEEEEEE
T ss_conf 996489858871865799995
No 99
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=82.04 E-value=1.2 Score=22.29 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=26.6
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCC--------CCCC-CCCEEEEEC---CCCCCCCE
Q ss_conf 51343259899999876531012222357--------2002-584088861---52326210
Q gi|254781052|r 315 IRHADKMNIVEIEREIARLGREARAGHLS--------MRDL-QNGTFTISN---GGVYGSLL 364 (436)
Q Consensus 315 I~~a~~~~l~~i~~~~~~l~~~ar~~~l~--------~~el-~ggt~tiSN---lG~~G~~~ 364 (436)
+......++..++..+++.++++.+.... ..++ .+.++++|| ++.|++++
T Consensus 302 ~~~~~~~~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~DF 363 (421)
T 2bgh_A 302 VDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDLDF 363 (421)
T ss_dssp ECTTCCCCGGGGHHHHHHHTCCCSSCHHHHHHHHHHHHHTSCGGGEEEEEEETTSCGGGCCS
T ss_pred ECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEC
T ss_conf 02443184589999999999999999989998654676504789739993789998676013
No 100
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=81.19 E-value=0.81 Score=23.42 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=30.9
Q ss_pred EEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEECCCEEEEEECC
Q ss_conf 998268878348974999952762456667878789999707888855177118998345
Q gi|254781052|r 39 TWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIA 98 (436)
Q Consensus 39 ~Wlv~~Gd~V~~gd~i~eVETDKa~~evesp~~G~l~~i~v~eGd~v~VG~~i~~i~~~~ 98 (436)
.++.+.-+-|-.|-.+++.--.+ -|.-.++++++|+.+.-|++|+.|....
T Consensus 46 ~~i~~~e~~v~~G~~~~~~~~~~---------~~~~v~~~~~dG~~v~~g~~i~~i~G~~ 96 (285)
T 1o4u_A 46 HLLLKTENVVASGIEVSRMFLEK---------MGLLSKFNVEDGEYLEGTGVIGEIEGNT 96 (285)
T ss_dssp EEEECCSEEECCSHHHHHHHHHH---------TTCEEEESCCTTCEEESCEEEEEEEEEH
T ss_pred EEEEECCCEEEECHHHHHHHHHH---------CCCEEEEEECCCCEECCCCEEEEEEECH
T ss_conf 99996799999859999999997---------4987999927998821783789999668
No 101
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=81.04 E-value=1.4 Score=21.91 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=24.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCC-----------------CCC--CCCCCCCCEEEEEC---CCCCCCCEE
Q ss_conf 134325989999987653101222-----------------235--72002584088861---523262101
Q gi|254781052|r 316 RHADKMNIVEIEREIARLGREARA-----------------GHL--SMRDLQNGTFTISN---GGVYGSLLS 365 (436)
Q Consensus 316 ~~a~~~~l~~i~~~~~~l~~~ar~-----------------~~l--~~~el~ggt~tiSN---lG~~G~~~~ 365 (436)
.+....++..++..+++-..+... .++ ......+..+.+|| ++.|++++.
T Consensus 320 ~~l~~~~l~~~A~~Ir~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG 391 (451)
T 2rkv_A 320 GEIANESLGATASRLRSELDPASMRQRTRGLATYLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFG 391 (451)
T ss_dssp HHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCCTTBCTTTTCCTTTCEEEEECTTCCGGGCCTT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 775138599999999999987557999999999998575534321114678898799938899987554328
No 102
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=79.41 E-value=1.3 Score=22.13 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=17.9
Q ss_pred EEEEEEECCCCEEEECCCEEEEEEC
Q ss_conf 8999970788885517711899834
Q gi|254781052|r 73 KLHEMSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 73 ~l~~i~v~eGd~v~VG~~i~~i~~~ 97 (436)
+-.++++++|+.+.-|++|+.+...
T Consensus 84 ~~~~~~~~dG~~v~~g~~i~~i~G~ 108 (300)
T 3l0g_A 84 VKYEIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEEEECCCTTCEECSSCEEEEEEEE
T ss_pred EEEEEEECCCCEEECCCEEEEEEEH
T ss_conf 7999981799962124008999407
No 103
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=68.66 E-value=4.7 Score=18.37 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=13.1
Q ss_pred EHHHHHHHHHHHHHHHCC
Q ss_conf 028899999999999709
Q gi|254781052|r 411 DGKEAVTFLVRLKELLED 428 (436)
Q Consensus 411 dGa~aa~Fl~~l~~~le~ 428 (436)
.-.+.-+|.+.|.+.|+.
T Consensus 435 ~~~~me~f~~~f~~~L~~ 452 (454)
T 2e1v_A 435 SATQMEDFVHIFDDGLKA 452 (454)
T ss_dssp EHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998870
No 104
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=63.92 E-value=5.3 Score=18.03 Aligned_cols=19 Identities=11% Similarity=0.080 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 1243210122221011468
Q gi|254781052|r 262 KLGFMGFFTKAASHVLQEI 280 (436)
Q Consensus 262 klt~~~~likA~a~Al~~~ 280 (436)
++|.+.++.-|++.++.++
T Consensus 234 g~T~~~~l~aa~~~~l~~~ 252 (422)
T 1q9j_A 234 RLSLNAVVAAAILLTEWQL 252 (422)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998
No 105
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=62.92 E-value=3.6 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.9
Q ss_pred EEEEECCCCEEEECC------CEEEEEE
Q ss_conf 999707888855177------1189983
Q gi|254781052|r 75 HEMSVAKGDTVTYGG------FLGYIVE 96 (436)
Q Consensus 75 ~~i~v~eGd~v~VG~------~i~~i~~ 96 (436)
.++++++|+.+..|+ +|+.+..
T Consensus 69 v~~~~~dG~~v~~g~~~~~~~vi~~i~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEEECCCEECCCCCCCCCEEEEEEEC
T ss_conf 8999825988503436776669999935
No 106
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=59.24 E-value=4.4 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=9.0
Q ss_pred ECCCCCEEEEECCCC
Q ss_conf 036654157716872
Q gi|254781052|r 296 NYCHIGVAVGTDKGL 310 (436)
Q Consensus 296 ~~vnigiAv~~~~GL 310 (436)
...|-||-++.+.|-
T Consensus 177 ~~~h~GiDi~~~~gt 191 (282)
T 2hsi_A 177 RNPHSGLDFAVPAGT 191 (282)
T ss_dssp --CCCSEEECCCTTC
T ss_pred CCCCCEEEEECCCCC
T ss_conf 874012599748997
No 107
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=58.71 E-value=4.6 Score=18.44 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.2
Q ss_pred EEEEEHHHHHHHHHHHHHH
Q ss_conf 0114028899999999999
Q gi|254781052|r 407 HRIVDGKEAVTFLVRLKEL 425 (436)
Q Consensus 407 HRvidGa~aa~Fl~~l~~~ 425 (436)
.+-+.+.+-++|++...++
T Consensus 333 ~~~l~~~~~~~f~~~~~~~ 351 (361)
T 2gu1_A 333 AKSLSSNQKTSFLARVSEF 351 (361)
T ss_dssp -------------------
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8878989999999999998
No 108
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=53.38 E-value=6.4 Score=17.51 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.3
Q ss_pred CCCEEEEECCC
Q ss_conf 65415771687
Q gi|254781052|r 299 HIGVAVGTDKG 309 (436)
Q Consensus 299 nigiAv~~~~G 309 (436)
|-||=+..+.|
T Consensus 185 H~GIDi~a~~G 195 (291)
T 1qwy_A 185 HYGVDYAMPEN 195 (291)
T ss_dssp ECSEEEECCTT
T ss_pred EEEEEECCCCC
T ss_conf 58388588999
No 109
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=45.44 E-value=9.3 Score=16.43 Aligned_cols=21 Identities=10% Similarity=-0.135 Sum_probs=17.3
Q ss_pred EEECCCCEEEECCCEEEEEEC
Q ss_conf 970788885517711899834
Q gi|254781052|r 77 MSVAKGDTVTYGGFLGYIVEI 97 (436)
Q Consensus 77 i~v~eGd~v~VG~~i~~i~~~ 97 (436)
..++||+.|+.|.||+.|...
T Consensus 80 ~av~EG~~v~~g~pil~I~G~ 100 (395)
T 2i14_A 80 YAMPEGTIFHPYEPVLQIEGD 100 (395)
T ss_dssp EECCTTCEECTTSCSEEEEEE
T ss_pred EECCCCCEECCCCEEEEEEEC
T ss_conf 981797386599769999827
No 110
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=39.86 E-value=5 Score=18.18 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=5.0
Q ss_pred HHCCCEEEECCC
Q ss_conf 322842777688
Q gi|254781052|r 16 VRSMATKILVPS 27 (436)
Q Consensus 16 ~~~M~~ei~mP~ 27 (436)
...|.++|-.|+
T Consensus 26 la~k~~~ievpq 37 (292)
T 1q90_A 26 LAQKAVEIEVPQ 37 (292)
T ss_dssp CCBCCCEEECCS
T ss_pred CCCCCEEECCCC
T ss_conf 114956641465
No 111
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=35.15 E-value=15 Score=15.11 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=13.5
Q ss_pred EEEEEECCCCEEEECCCEEEEE
Q ss_conf 9999707888855177118998
Q gi|254781052|r 74 LHEMSVAKGDTVTYGGFLGYIV 95 (436)
Q Consensus 74 l~~i~v~eGd~v~VG~~i~~i~ 95 (436)
|.++.++.|+.|.-|+.|++..
T Consensus 82 l~~~~V~~G~~V~~Gq~IG~~g 103 (182)
T 3it5_A 82 MDQIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp EESCCCCTTCEECTTCEEEEEC
T ss_pred CEECCCCCCCEEECCCEEEEEC
T ss_conf 4012676898994772882753
No 112
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=33.43 E-value=15 Score=14.97 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=4.0
Q ss_pred CCCCCCHHHH
Q ss_conf 1111220111
Q gi|254781052|r 138 AESGLSPSDI 147 (436)
Q Consensus 138 ~e~gidls~v 147 (436)
.|.++|+..+
T Consensus 44 ~ESgfnP~a~ 53 (334)
T 3csq_A 44 SESTINPGLW 53 (334)
T ss_dssp HHHSSCTTCB
T ss_pred HHHCCCCHHH
T ss_conf 6627882232
No 113
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis}
Probab=33.30 E-value=19 Score=14.33 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCC---CCEE-ECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 12432101222210114686543123568335730366541577168721---1135-1343259899999876531012
Q gi|254781052|r 262 KLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLV---VPVI-RHADKMNIVEIEREIARLGREA 337 (436)
Q Consensus 262 klt~~~~likA~a~Al~~~P~lNa~~~~~~i~~~~~vnigiAv~~~~GL~---vPVI-~~a~~~~l~~i~~~~~~l~~~a 337 (436)
++|+..++.-|++.+|.++...+...-+-...-+.+-++. .--|.+ +|+- .-....++.++.+++.+-...+
T Consensus 326 ~~t~~~~l~aa~~~~l~~~~~~~~~~ig~~~~~R~~~~~~----~~vG~~~~~~Pl~~~~~~~~~~~~~l~~~~~~~~~~ 401 (520)
T 2jgp_A 326 GTTLYMVLLAAYNVLLAKYAGQEDIIVGTPITGRSHADLE----PIVGMFVNTLAMRNKPQREKTFSEFLQEVKQNALDA 401 (520)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTCSCEEEEEEECCCCSGGGT----TCCSCCCEEEEEEECCCTTSBHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHC----CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 9989999999999999985399853661333598804302----665555524689983367887999999999999997
Q ss_pred CCC-CCCCCC----------CCC-----CEEEEECCCC----CCCCEECCCCCCCC--EE--EEEECCCEEEEEEECCEE
Q ss_conf 222-357200----------258-----4088861523----26210112015887--07--898435135678888957
Q gi|254781052|r 338 RAG-HLSMRD----------LQN-----GTFTISNGGV----YGSLLSSPILNPPQ--SG--ILGMHKIQERPIVEDGQI 393 (436)
Q Consensus 338 r~~-~l~~~e----------l~g-----gt~tiSNlG~----~G~~~~~piI~ppq--~a--Il~vg~i~~~~v~~~g~~ 393 (436)
+.. .+..++ +.+ ..|..-|.-. ++.....++..+.. .+ -|.+. ....+|.
T Consensus 402 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~-----~~~~~~~- 475 (520)
T 2jgp_A 402 YGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFS-----ATEEREE- 475 (520)
T ss_dssp HHTCCSCHHHHHHHTCCCCCTTSCSSCSEEEEEECCCCSCCCCSSEEEEECSSCSSCSBCSSSEEEE-----EEECSSC-
T ss_pred HHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE-----EEEECCE-
T ss_conf 6525899999999856766667898667799972787543447887302543267676676146999-----9981998-
Q ss_pred EEEEEEEEEEEEEEEEEEHHHHHHHHHH----HHHHHCCHHHHHHCC
Q ss_conf 8954889999731011402889999999----999970989887359
Q gi|254781052|r 394 VIRPMMYLALSYDHRIVDGKEAVTFLVR----LKELLEDPERFILDL 436 (436)
Q Consensus 394 ~~~~~~~ltls~DHRvidGa~aa~Fl~~----l~~~le~P~~ll~~~ 436 (436)
+.+.+.||-.+++...+.+|+.. +.+++++|+..|-||
T Consensus 476 -----l~l~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~l~~l 517 (520)
T 2jgp_A 476 -----MTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEI 517 (520)
T ss_dssp -----EEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGC
T ss_pred -----EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
T ss_conf -----999999843458999999999999999999997869965526
No 114
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=31.36 E-value=19 Score=14.38 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=12.3
Q ss_pred CCCCCEEEEECCC--CCCCEEECCC
Q ss_conf 3665415771687--2111351343
Q gi|254781052|r 297 YCHIGVAVGTDKG--LVVPVIRHAD 319 (436)
Q Consensus 297 ~vnigiAv~~~~G--L~vPVI~~a~ 319 (436)
..|-|+=+..+.| ...||..-++
T Consensus 123 r~H~GiDi~a~~Gt~~~~PV~A~~d 147 (252)
T 3nyy_A 123 RGHEGTDIMAEKNTPGYYPVVSMTD 147 (252)
T ss_dssp TTCCCEEEEESSCCTTCSEEECSSC
T ss_pred CCCEEEEECCCCCCCCCCEEEEEEC
T ss_conf 8607899557899866654899656
No 115
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivalenol, T-2 toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=30.53 E-value=21 Score=14.03 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.9
Q ss_pred EEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCH
Q ss_conf 88999973101140288999999999997098
Q gi|254781052|r 398 MMYLALSYDHRIVDGKEAVTFLVRLKELLEDP 429 (436)
Q Consensus 398 ~~~ltls~DHRvidGa~aa~Fl~~l~~~le~P 429 (436)
.+.+++.||-...+.+.+.+|++.+.++|+.-
T Consensus 486 ~l~l~~~Y~~~~~~~~~v~~~l~~~~~~L~~F 517 (519)
T 3fot_A 486 ASTLNIIYNDANYTEAEVQKYLQSIVEFMLAF 517 (519)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999998865449999999999999999973
No 116
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=28.74 E-value=23 Score=13.83 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=27.0
Q ss_pred EEEEEEEEEEEEEHHHHHH----HHHHHHHHHCCHHHHHHC
Q ss_conf 8999973101140288999----999999997098988735
Q gi|254781052|r 399 MYLALSYDHRIVDGKEAVT----FLVRLKELLEDPERFILD 435 (436)
Q Consensus 399 ~~ltls~DHRvidGa~aa~----Fl~~l~~~le~P~~ll~~ 435 (436)
+.+.+.||-++.+...+.+ |.+.+.+++++|+..+-|
T Consensus 374 l~l~~~y~~~~~~~~~i~~l~~~f~~~l~~~~~~p~~~~~~ 414 (436)
T 1l5a_A 374 LCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQD 414 (436)
T ss_dssp EEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999982334899999999999999999999682875011
No 117
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=27.77 E-value=24 Score=13.73 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=37.9
Q ss_pred CCCCCCEEECCC---CCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEC
Q ss_conf 872111351343---259899999876531012-2223572002584088861
Q gi|254781052|r 308 KGLVVPVIRHAD---KMNIVEIEREIARLGREA-RAGHLSMRDLQNGTFTISN 356 (436)
Q Consensus 308 ~GL~vPVI~~a~---~~~l~~i~~~~~~l~~~a-r~~~l~~~el~ggt~tiSN 356 (436)
.|+++=-||+|- .=+-.+|.+...+|.+.- +.|.|.++|+---.||+|.
T Consensus 28 ~~~mvRgIRGAtTv~~nt~e~I~~At~eLl~eii~~N~l~~edIiSv~FT~T~ 80 (148)
T 1xho_A 28 AGLMVWAIRGATTVSDNTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTK 80 (148)
T ss_dssp ----CEEEEEEEECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCEEEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECC
T ss_conf 58799984063552878999999999999999999759997898999998668
No 118
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A
Probab=25.72 E-value=26 Score=13.49 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=5.7
Q ss_pred CCCCCEEEEE
Q ss_conf 7878789999
Q gi|254781052|r 68 SPVSGKLHEM 77 (436)
Q Consensus 68 sp~~G~l~~i 77 (436)
.+.+|+|.-+
T Consensus 82 ~~~dgvV~G~ 91 (530)
T 3iav_A 82 PYGDGVVTGY 91 (530)
T ss_dssp CTTTTEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 8897599999
No 119
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=23.00 E-value=11 Score=15.95 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=12.4
Q ss_pred EECCCCCEEEEEEECCCCE--EEECCCE
Q ss_conf 6678787899997078888--5517711
Q gi|254781052|r 66 VPSPVSGKLHEMSVAKGDT--VTYGGFL 91 (436)
Q Consensus 66 vesp~~G~l~~i~v~eGd~--v~VG~~i 91 (436)
|.-|||=-+..+++. |.. ..||+++
T Consensus 50 VkIPYD~~~kQvlan-G~kg~LNVGAVl 76 (289)
T 1vf5_C 50 VKIPYDTKLQQVAAD-GSKVGLNVGAVL 76 (289)
T ss_dssp EECCCCSCCCEECTT-SCEECCCEECEE
T ss_pred EECCCCCCCCEECCC-CCCCCCCCEEEE
T ss_conf 975566763032148-842565410499
No 120
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=22.55 E-value=30 Score=13.09 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=9.6
Q ss_pred EEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 3101140288999999999997
Q gi|254781052|r 405 YDHRIVDGKEAVTFLVRLKELL 426 (436)
Q Consensus 405 ~DHRvidGa~aa~Fl~~l~~~l 426 (436)
+++.+||-++-=.+|...-+.|
T Consensus 510 ~iD~VIdP~dTR~~L~~~l~~~ 531 (548)
T 2bzr_A 510 YVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp SSSEECCGGGHHHHHHHHHHHT
T ss_pred CCCCEECHHHHHHHHHHHHHHH
T ss_conf 8780377899999999999998
Done!