RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide
succinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(436 letters)
>gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
(2-oxoglutarate dehydrogenase, E2 subunit) [Energy
production and conversion].
Length = 457
Score = 393 bits (1010), Expect = e-110
Identities = 195/419 (46%), Positives = 259/419 (61%), Gaps = 41/419 (9%)
Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82
+ VP ES+ E + WLK++G+ V E + E+ETDK TVEVPSP SG + E+ V G
Sbjct: 75 VEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG 134
Query: 83 DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH-----SPSASKLI 137
DTVT G L I A ++P P+ P P + +
Sbjct: 135 DTVTPGQKLAKISPGAAPAKG--GASAPAKAE---PKTAPAAAAPPKPSSKPPPKEAAPV 189
Query: 138 AESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFE 197
AES +PS + S + SV Q + SR
Sbjct: 190 AESPPAPSSPEPVPA-------------SAKKPSVAQPKPPPSEGATPSR---------- 226
Query: 198 KSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEK 257
SE RVKM+R+R +A+RLKD+QNTAA+L+T+NEV+MS ++ +R +YKD F K
Sbjct: 227 --------SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLK 278
Query: 258 KHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRH 317
KHG+KLGFM F+KAA++ LQ+ VNA IDGD IVY++Y I VAV T KGLVVPVIR+
Sbjct: 279 KHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRN 338
Query: 318 ADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGIL 377
A+ MN +IE+ IA LG++AR G L++ D+ GTFTISNGGV+GSL +PI+NPPQS IL
Sbjct: 339 AESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAIL 398
Query: 378 GMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
GMH I+ERP+V GQ+V RPMMY+AL+YDHR++DG+EAVTFL ++KE +EDP + +LDL
Sbjct: 399 GMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457
>gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 377 bits (969), Expect = e-105
Identities = 181/423 (42%), Positives = 268/423 (63%), Gaps = 25/423 (5%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA +I +P LGE++ E T+ WLK++G+ V+ G++LVE+ETDK T+EVP+P +G L ++
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 79 VAKGDTVTYGGFLGYIVEIARD----EDESIKQNSPNSTANGLPEITDQGFQMPHSPSAS 134
V +GDTV G + I E D + + + + + ++ SP+
Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120
Query: 135 KLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASN 194
+L E+G+ S +KGTG G+I K DV AA++ ++ +
Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAA--------------- 165
Query: 195 IFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDI 254
+ S EERV MSR+R+ +A+R+ +++ T L+ +NEV+M++++++R + K+
Sbjct: 166 ---AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEE 222
Query: 255 FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDH--IVYKNYCHIGVAVGTDKGLVV 312
FEKK G+KL F+ F KA L++ VNA IDGD IVY Y +IG+AV T +GLVV
Sbjct: 223 FEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVV 281
Query: 313 PVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPP 372
PVIR ADK ++ EI +EI L ++AR G L+ ++Q GTFTISN G++GSL+ +PI+NPP
Sbjct: 282 PVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPP 341
Query: 373 QSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERF 432
Q ILG+ I+ERP+V G+IV+RPMMYL+LSYDHR++DG EA FLV LKELLEDPER
Sbjct: 342 QVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERL 401
Query: 433 ILD 435
+L+
Sbjct: 402 LLE 404
>gnl|CDD|143956 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 231
Score = 285 bits (733), Expect = 1e-77
Identities = 105/232 (45%), Positives = 157/232 (67%), Gaps = 2/232 (0%)
Query: 204 ELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKL 263
E RV +S +R+ +AKR+ +++ T + +EV+++ ++++R K + + G+KL
Sbjct: 1 PGEETRVPLSGIRKAIAKRMTESKQTIPHFTLTDEVDVTALLALREELKADAKDE-GLKL 59
Query: 264 GFMGFFTKAASHVLQEIKGVNAEIDGD-HIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322
F+ F KA + L++ +NA DG+ IVYK Y +IG+AV T GL+VPVIR+AD+ +
Sbjct: 60 TFLPFLVKAVALALKKFPELNASWDGEAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKS 119
Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382
++EI +EI L AR G L DLQ GTFTISN G++G +PI+NPPQ ILG+ I
Sbjct: 120 LLEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAI 179
Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
++RP+V +G+IVIR +M L+LS+DHR++DG EA FL LKELLE+PE +L
Sbjct: 180 RKRPVVVNGEIVIRKVMTLSLSFDHRVIDGAEAARFLNDLKELLENPELLLL 231
>gnl|CDD|35777 KOG0557, KOG0557, KOG0557, Dihydrolipoamide acetyltransferase
[Energy production and conversion].
Length = 470
Score = 190 bits (485), Expect = 5e-49
Identities = 120/452 (26%), Positives = 204/452 (45%), Gaps = 50/452 (11%)
Query: 17 RSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
+P+L ++ E + +W K+ G+ + G++L+E+ETDK T++V + G L +
Sbjct: 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAK 94
Query: 77 MSVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP----------------- 118
+ + +G V G + IVE D+ + K +++
Sbjct: 95 ILIEEGSKDVPVGKPIAIIVE-DEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEA 153
Query: 119 ------EITDQGFQMPH------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166
T Q + + SP A KL E GL S I GTG G+ILK D+ +
Sbjct: 154 PSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVG 213
Query: 167 RSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDA 226
+ ++ S + S E + +S +R+ +AKRL ++
Sbjct: 214 SGKKKSAKAPKASAPPPAPAAPPVSLPG------------YEDIPVSNMRRVIAKRLLES 261
Query: 227 QNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNA- 285
+ T +VN+ +++++R + + +K K+ KAA+ L ++ VN+
Sbjct: 262 KQTIPHYYVTVDVNLDKLLALR---EKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSS 318
Query: 286 EIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMR 345
+D I + I VAV T GL+ P+I++AD + I ++ L ++AR G L
Sbjct: 319 WMDELVIRQLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPE 378
Query: 346 DLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM---HKIQERPIVEDGQIVIRPMMYLA 402
+ Q GTFT+SN G++G + + I+NPPQ+ IL + + + M +
Sbjct: 379 EFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVT 438
Query: 403 LSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
LS DHR+VDG A FL KE LE+PE +L
Sbjct: 439 LSADHRVVDGAVAARFLDEFKENLENPEFLLL 470
>gnl|CDD|35778 KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylase
(alpha-keto acid dehydrogenase E2 subunit) [Energy
production and conversion].
Length = 474
Score = 187 bits (477), Expect = 3e-48
Identities = 122/413 (29%), Positives = 209/413 (50%), Gaps = 15/413 (3%)
Query: 28 LGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTY 87
+GE + E TV W + G++VE + L E+++DK +V + S GK+ ++ + D
Sbjct: 72 IGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKV 131
Query: 88 G-GFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSASKLIAESGLSPSD 146
G + VE ++D E + SP + + + + +P+ +L E+G+ ++
Sbjct: 132 GKPLVDLEVEDSQDSPEDSDE-SPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAE 190
Query: 147 IKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELS 206
+ GTGK G++LK DV+ + + V + H AS+ E +
Sbjct: 191 VTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLE--------A 242
Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266
++ V + + + K + +A +E+N ++ +R K+ K+ GIKL FM
Sbjct: 243 DKTVPLRGFSRAMVKTMTEALKIPH-FGYVDEINCDSLVKLRQELKE-NAKERGIKLTFM 300
Query: 267 GFFTKAASHVLQEIKGVNAEID--GDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIV 324
FF KAAS L + VN+ D ++I+ K +IGVA+ T++GLVVP I++ ++I
Sbjct: 301 PFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIF 360
Query: 325 EIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQE 384
EI +E+ RL G LS DL GTFT+SN G G +SP++ PP+ I + +I++
Sbjct: 361 EIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEK 420
Query: 385 RPIVED-GQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
P G++ +M ++ S DHR++DG F + KE LE+P +L L
Sbjct: 421 VPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQL 473
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 96.3 bits (241), Expect = 1e-20
Identities = 36/74 (48%), Positives = 51/74 (68%)
Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
T+I +P LGES+ E T+ WL + G+SVE G++L E+ETDK TVEV +P +G L ++ V
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60
Query: 81 KGDTVTYGGFLGYI 94
+GDTV G + I
Sbjct: 61 EGDTVPVGQVIAVI 74
>gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine
residue binds biotin in one group and lipoic acid in
the other. Note that the model may not recognize the
Glycine cleavage system H proteins.
Length = 73
Score = 70.3 bits (173), Expect = 1e-12
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
T+I P +GESV E T WL ++G+ V+ G++L E+E K+ +E+P+PV+G + E+ V
Sbjct: 1 TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59
Query: 81 KGDTVTYGGFLGYI 94
+GDTV G L I
Sbjct: 60 EGDTVEVGDPLAKI 73
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent
carboxylases/decarboxylases, the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine
cleavage system (GCS). These domains transport CO2,
acyl, or methylamine, respectively, between components
of the complex/protein via a biotinyl or lipoyl group,
which is covalently attached to a highly conserved
lysine residue.
Length = 73
Score = 66.3 bits (162), Expect = 2e-11
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82
IL+P L + + + TV WLK++G+ V+ G++L E+E K T +V +P SG + ++ V +G
Sbjct: 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61
Query: 83 DTVTYGGFLGYI 94
V L I
Sbjct: 62 TKVEGDTPLVKI 73
>gnl|CDD|111687 pfam02817, E3_binding, e3 binding domain. This family represents a
small domain of the E2 subunit of 2-oxo-acid
dehydrogenases responsible for the binding of the E3
subunit.
Length = 39
Score = 50.1 bits (121), Expect = 1e-06
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 126 QMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMA 163
++ SP+A KL AE G+ S +KGTG G+I K DV+A
Sbjct: 2 RVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 46.6 bits (112), Expect = 1e-05
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
TV L + G+ VE G+ L LE K+ EV +PV+G + E+ V +GD V G
Sbjct: 9 TVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG 61
>gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 43.9 bits (103), Expect = 8e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 29 GESVNEATVGTWLK---EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85
G V VGT K E+G++V+ G+ L +E K+ E+ +P G + E+ V GD V
Sbjct: 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPV 129
Query: 86 TYGGFLGYI 94
YG L I
Sbjct: 130 EYGDPLAVI 138
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system
(GCS) found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of
4 different components (P-, H-, T- and L-proteins)
which catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine
from the P-protein (glycine dehydrogenase) to the
T-protein (aminomethyltransferase) via a lipoyl group,
attached to a completely conserved lysine residue.
Length = 96
Score = 39.4 bits (93), Expect = 0.002
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 40 WLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
L E+G V+ G+ +E+ K ++ SPVSG++ E
Sbjct: 35 ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVE 71
>gnl|CDD|30855 COG0509, GcvH, Glycine cleavage system H protein
(lipoate-binding) [Amino acid transport and
metabolism].
Length = 131
Score = 34.8 bits (80), Expect = 0.044
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
L E+G V+ GE L +E+ K +V +PVSG++ E
Sbjct: 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVE 81
>gnl|CDD|31909 COG1723, COG1723, Uncharacterized conserved protein [Function
unknown].
Length = 331
Score = 33.7 bits (77), Expect = 0.097
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 187 RIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR 243
+II +SN+F K ++S L++ VK+S ++V + + L+ +V++SR
Sbjct: 167 KIILRSSNVFTKLAISHALAQS-VKLSVFEESVDNTIDQTKPIPQELARTGKVSLSR 222
>gnl|CDD|110591 pfam01597, GCV_H, Glycine cleavage H-protein. This is a family
of glycine cleavage H-proteins, part of the glycine
cleavage multienzyme complex (GCV) found in bacteria
and the mitochondria of eukaryotes. GCV catalyses the
catabolism of glycine in eukaryotes. A lipoyl group is
attached to a completely conserved lysine residue. The
H protein shuttles the methylamine group of glycine
from the P protein to the T protein.
Length = 122
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
L E+G V+ GE L +E+ K EV +PVSG++ E++
Sbjct: 38 LPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEK 77
>gnl|CDD|35905 KOG0686, KOG0686, KOG0686, COP9 signalosome, subunit CSN1
[Posttranslational modification, protein turnover,
chaperones, Signal transduction mechanisms].
Length = 466
Score = 30.0 bits (67), Expect = 1.3
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 156 ILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRL 215
IL+S+++ I +DSH K +++R +S + FE+ + S+ K L
Sbjct: 381 ILESELLELI---LEGKISGRIDSHNKILYARDADSENATFERVLPMGKRSQLEAKALLL 437
Query: 216 RQTVAKR 222
R + K
Sbjct: 438 RAALLKN 444
>gnl|CDD|33063 COG3252, COG3252, Methenyltetrahydromethanopterin cyclohydrolase
[Coenzyme metabolism].
Length = 314
Score = 29.5 bits (66), Expect = 1.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANG 116
+PV+G + D V YGG + V+ + DE E + + P+S +
Sbjct: 211 APVAGDDLKAMGRTNDAVLYGGRVYLTVK-SEDELEDLVKAVPSSASED 258
>gnl|CDD|146907 pfam04499, SAPS, SIT4 phosphatase-associated protein. This family
includes a conserved region from a group of yeast
proteins that associate with the SIT4 phosphatase. This
association is required for SIT4's role in G1 cyclin
transcription and for bud formation. This family also
includes homologous regions from other eukaryotes.
Length = 380
Score = 29.1 bits (66), Expect = 2.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 223 LKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQ 278
D T IL E D F+ K G +LG+MG T A V++
Sbjct: 298 FTDCNLTQRILEGQKES-------------DEFQAKGGPRLGYMGHLTLIAEEVVK 340
>gnl|CDD|36297 KOG1081, KOG1081, KOG1081, Transcription factor NSD1 and related
SET domain proteins [Transcription].
Length = 463
Score = 28.4 bits (63), Expect = 4.0
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 173 DQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVA 220
+D+ KG +SR +N + ++ + + + RV + RQ A
Sbjct: 359 KDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEA 406
>gnl|CDD|38583 KOG3373, KOG3373, KOG3373, Glycine cleavage system H protein
(lipoate-binding) [Amino acid transport and metabolism].
Length = 172
Score = 27.7 bits (61), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD 83
L E+G V G+ +E+ K E+ SPVSG++ E++ +
Sbjct: 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129
>gnl|CDD|32524 COG2377, COG2377, Predicted molecular chaperone distantly related
to HSP70-fold metalloproteases [Posttranslational
modification, protein turnover, chaperones].
Length = 371
Score = 27.5 bits (61), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 129 HSPSASKLIAESGLSPSDIKGTGKRGQ 155
H+ + + L+AE GL P DI+ G GQ
Sbjct: 75 HAQAVAALLAEQGLLPRDIRAIGCHGQ 101
>gnl|CDD|111207 pfam02289, MCH, Cyclohydrolase (MCH). Methenyl
tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is
involved in methanogenesis in bacteria and archaea,
producing methane from carbon monoxide or carbon
dioxide.
Length = 312
Score = 27.4 bits (61), Expect = 7.6
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANG 116
+PV + D V YGG + V+ + + + +N P++T+
Sbjct: 210 APVHPDDLQAMGRTNDAVLYGGRVYLYVKSDDADLKELAENLPSTTSED 258
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.133 0.363
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,979,488
Number of extensions: 263249
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 588
Number of HSP's successfully gapped: 40
Length of query: 436
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 339
Effective length of database: 4,167,664
Effective search space: 1412838096
Effective search space used: 1412838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.5 bits)