BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (436 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 436 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/436 (100%), Positives = 436/436 (100%) Query: 1 MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD 60 MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD Sbjct: 1 MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD 60 Query: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120 KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI Sbjct: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120 Query: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH Sbjct: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180 Query: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN Sbjct: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240 Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI Sbjct: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300 Query: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY Sbjct: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360 Query: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV Sbjct: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420 Query: 421 RLKELLEDPERFILDL 436 RLKELLEDPERFILDL Sbjct: 421 RLKELLEDPERFILDL 436 >gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 156 bits (394), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 121/434 (27%), Positives = 207/434 (47%), Gaps = 30/434 (6%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M I +PSL ++ E + W+K+ G+ + G+IL E+ETDK +E S G + E+ Sbjct: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 Query: 79 VAKG-DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP--------- 128 V G + + I+ I D E I + P S N + + P Sbjct: 62 VPAGTENIAVNS---PILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSK 117 Query: 129 ----HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGV 184 SP A +L E G+ S + G+G G+I+KSD+ IS + D ST+ S G+ Sbjct: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GL 175 Query: 185 FSRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR 243 I++ N+F K S E + +R+T+A RL+ ++ T + N+ Sbjct: 176 VDESIDANILNLFAKDSY------EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDN 229 Query: 244 IISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300 ++S+R +R ++ K+ KA + + ++ N + ++ + I Sbjct: 230 LLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDI 289 Query: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360 VAV G+V P+IR AD+ +I++I E+ +L + A+ L + Q GT +ISN G+ Sbjct: 290 SVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGML 349 Query: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420 G ++NPPQS IL + +++ + ++ +I + +M LS DHR VDG A L Sbjct: 350 GINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLA 409 Query: 421 RLKELLEDPERFIL 434 + KE +E+P ++ Sbjct: 410 KFKEYIENPVWMLM 423 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M + +PSL ++ E + W K G+ ++ G+I+ E+ETDK +EV S G L ++ Sbjct: 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60 Query: 79 VAKG 82 G Sbjct: 61 CPNG 64 >gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 30.0 bits (66), Expect = 0.080, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFL 91 G V G+ L+ +E K + +P SGK+ +++V G +V YG L Sbjct: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 26.2 bits (56), Expect = 0.98, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 164 AISRSESSVDQSTVDSHK---KGVFSRI--INSASNIFEKSSVSEELSEERVKMSRLRQT 218 A + S + +D +TV S + KG++ I ++S S++ E V +E ++R Q Sbjct: 326 APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE----HYDVARRVQE 381 Query: 219 VAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIF-EKKHGIKLGFMGFFTKAASHVL 277 + +R K Q+ AIL +++ R+R + F + + F G K S L Sbjct: 382 ILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVS--L 439 Query: 278 QE-IKGVNAEIDG--DHIVYKNYCHIG 301 +E I+G + G DH+ + +G Sbjct: 440 EETIRGFKGLVQGEYDHLPELAFYMVG 466 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESV-EIGEILVELETDKVTVEVPSP 69 T+I VP V EAT+G + IGE V + G I + ++K + PSP Sbjct: 79 GTQITVP-----VGEATLGRIMNVIGEPVDDQGAI---ISSEKRAIHQPSP 121 >gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62] Length = 111 Score = 26.2 bits (56), Expect = 1.00, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 23/39 (58%) Query: 71 SGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNS 109 SGK+ E V+KGD V +G + G +++ E+ + Q S Sbjct: 60 SGKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQES 98 >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%) Query: 79 VAKGDTVTYGGFLGYI-----------VEIARDEDESIKQNSPNSTANGLP 118 V+KGD GG LG + VE+A ++E+ K N+ + LP Sbjct: 753 VSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLP 803 >gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 23/55 (41%) Query: 110 PNSTANGLPEITDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164 P ST N + G Q S ++I + S D+ G R I+ DV+ A Sbjct: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%) Query: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGK-----EAVTFLVR--LKE 424 P S + K +E+ +DG I+IR ++Y+ +I+ GK + ++ + + E Sbjct: 224 PYSSCVVTEKWEEK---KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280 Query: 425 LLEDPERFIL 434 +LE P IL Sbjct: 281 ILEQPVHLIL 290 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 287 IDGDHIVYKNYCHIGVAVG-TDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMR 345 ID D + +G+ V +G V +R ADK IV I + +LG + A + R Sbjct: 1009 IDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTAR 1068 Query: 346 DLQN 349 L++ Sbjct: 1069 FLES 1072 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 176 TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKD 225 T+++H + + +I SASN + E +S + RQT+ K+L D Sbjct: 885 TLENHSQAMLEKI--SASNTLVAKTFEECMSNILLSYDENRQTLDKKLSD 932 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.133 0.363 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,701 Number of Sequences: 1233 Number of extensions: 11062 Number of successful extensions: 32 Number of sequences better than 100.0: 17 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 18 length of query: 436 length of database: 328,796 effective HSP length: 77 effective length of query: 359 effective length of database: 233,855 effective search space: 83953945 effective search space used: 83953945 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 40 (20.0 bits)