BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide
succinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(436 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 436
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/436 (100%), Positives = 436/436 (100%)
Query: 1 MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD 60
MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD
Sbjct: 1 MLTGIINNTGILEEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETD 60
Query: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120
KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI
Sbjct: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120
Query: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180
TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH
Sbjct: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180
Query: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240
KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN
Sbjct: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240
Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300
MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI
Sbjct: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300
Query: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360
GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY
Sbjct: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360
Query: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420
GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV
Sbjct: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420
Query: 421 RLKELLEDPERFILDL 436
RLKELLEDPERFILDL
Sbjct: 421 RLKELLEDPERFILDL 436
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 156 bits (394), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 207/434 (47%), Gaps = 30/434 (6%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M I +PSL ++ E + W+K+ G+ + G+IL E+ETDK +E S G + E+
Sbjct: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
Query: 79 VAKG-DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP--------- 128
V G + + I+ I D E I + P S N + + P
Sbjct: 62 VPAGTENIAVNS---PILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSK 117
Query: 129 ----HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGV 184
SP A +L E G+ S + G+G G+I+KSD+ IS + D ST+ S G+
Sbjct: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GL 175
Query: 185 FSRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR 243
I++ N+F K S E + +R+T+A RL+ ++ T + N+
Sbjct: 176 VDESIDANILNLFAKDSY------EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDN 229
Query: 244 IISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHI 300
++S+R +R ++ K+ KA + + ++ N + ++ + I
Sbjct: 230 LLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDI 289
Query: 301 GVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVY 360
VAV G+V P+IR AD+ +I++I E+ +L + A+ L + Q GT +ISN G+
Sbjct: 290 SVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGML 349
Query: 361 GSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLV 420
G ++NPPQS IL + +++ + ++ +I + +M LS DHR VDG A L
Sbjct: 350 GINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLA 409
Query: 421 RLKELLEDPERFIL 434
+ KE +E+P ++
Sbjct: 410 KFKEYIENPVWMLM 423
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M + +PSL ++ E + W K G+ ++ G+I+ E+ETDK +EV S G L ++
Sbjct: 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60
Query: 79 VAKG 82
G
Sbjct: 61 CPNG 64
>gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
[Candidatus Liberibacter asiaticus str. psy62]
Length = 171
Score = 30.0 bits (66), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFL 91
G V G+ L+ +E K + +P SGK+ +++V G +V YG L
Sbjct: 115 GNLVVEGQTLLIIEAMKTMNHIVAPCSGKVQDINVKDGQSVEYGDAL 161
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 26.2 bits (56), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 164 AISRSESSVDQSTVDSHK---KGVFSRI--INSASNIFEKSSVSEELSEERVKMSRLRQT 218
A + S + +D +TV S + KG++ I ++S S++ E V +E ++R Q
Sbjct: 326 APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQE----HYDVARRVQE 381
Query: 219 VAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIF-EKKHGIKLGFMGFFTKAASHVL 277
+ +R K Q+ AIL +++ R+R + F + + F G K S L
Sbjct: 382 ILQRYKSLQDIIAILGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVS--L 439
Query: 278 QE-IKGVNAEIDG--DHIVYKNYCHIG 301
+E I+G + G DH+ + +G
Sbjct: 440 EETIRGFKGLVQGEYDHLPELAFYMVG 466
Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESV-EIGEILVELETDKVTVEVPSP 69
T+I VP V EAT+G + IGE V + G I + ++K + PSP
Sbjct: 79 GTQITVP-----VGEATLGRIMNVIGEPVDDQGAI---ISSEKRAIHQPSP 121
>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62]
Length = 111
Score = 26.2 bits (56), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 71 SGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNS 109
SGK+ E V+KGD V +G + G +++ E+ + Q S
Sbjct: 60 SGKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQES 98
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 79 VAKGDTVTYGGFLGYI-----------VEIARDEDESIKQNSPNSTANGLP 118
V+KGD GG LG + VE+A ++E+ K N+ + LP
Sbjct: 753 VSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLP 803
>gi|254780630|ref|YP_003065043.1| ribonuclease PH [Candidatus Liberibacter asiaticus str. psy62]
Length = 242
Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 110 PNSTANGLPEITDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164
P ST N + G Q S ++I + S D+ G R I+ DV+ A
Sbjct: 67 PRSTGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQA 121
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGK-----EAVTFLVR--LKE 424
P S + K +E+ +DG I+IR ++Y+ +I+ GK + ++ + + E
Sbjct: 224 PYSSCVVTEKWEEK---KDGSILIRQVIYVERPSQKKIMLGKNGQNIKTISLEAKKEIAE 280
Query: 425 LLEDPERFIL 434
+LE P IL
Sbjct: 281 ILEQPVHLIL 290
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 287 IDGDHIVYKNYCHIGVAVG-TDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMR 345
ID D + +G+ V +G V +R ADK IV I + +LG + A + R
Sbjct: 1009 IDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTAR 1068
Query: 346 DLQN 349
L++
Sbjct: 1069 FLES 1072
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 176 TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKD 225
T+++H + + +I SASN + E +S + RQT+ K+L D
Sbjct: 885 TLENHSQAMLEKI--SASNTLVAKTFEECMSNILLSYDENRQTLDKKLSD 932
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.133 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,701
Number of Sequences: 1233
Number of extensions: 11062
Number of successful extensions: 32
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 18
length of query: 436
length of database: 328,796
effective HSP length: 77
effective length of query: 359
effective length of database: 233,855
effective search space: 83953945
effective search space used: 83953945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 40 (20.0 bits)