HHsearch alignment for GI: 254781053 and conserved domain: COG0446
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].
Probab=99.96 E-value=6.7e-30 Score=236.18 Aligned_cols=386 Identities=24% Similarity=0.270 Sum_probs=254.1
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf 999989866899999999879--93999937997150-251366737098999999999999866755816477532899
Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG-TCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466)
Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GG-tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466)
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~----~~-~-------------------~~--~~~~~~~~ 54 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP----LS-L-------------------YV--GGGIASLE 54 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----CC-E-------------------EE--CCCCCCCH
T ss_conf 98982559999999999850777885999523544555576----23-0-------------------53--34423400
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999999999877777876400431011001-11002221023575211232210000467665244457665321002
Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466)
T Consensus 55 ~~~~~~-------~----~~-~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~yd~LvlatGa~~~~~~~~----~~~~ 116 (415)
T COG0446 55 DLRYPP-------R----FN-RATGIDVRTGTEVTSIDPENKVVLLDDG--EIEYDYLVLATGARPRPPPIS----DWEG 116 (415)
T ss_pred HHCCCC-------C----HH-HCCCEEECCCCEEEECCCHHCEEEECCC--CCCCCCEEECCCCCCCCCCCC----CCCC
T ss_conf 211564-------2----34-3167286036468722612356991587--072652588147655667754----2224
Q ss_pred EEEEC---CCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 45305---741111---1133321012344543320132201220111000011122122-2211222222222222232
Q gi|254781053|r 161 IVSST---GALSFS---SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMD-KEIAAHCLKIMSKQGMNFQ 233 (466)
Q Consensus 161 ~~t~~---~~~~l~---~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d-~~~~~~~~~~l~~~gV~i~ 233 (466)
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 196 (415)
T COG0446 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELL 196 (415)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 43246899998765356677739998934999999999987799389997566423311218899999999997294898
Q ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCCCCCCCEEE-CCCCEEE
Q ss_conf 20023442014687216999721332110000023204531210367840000-126764223337763330-2684870
Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIEIGGQFQTS-ISTIYAI 311 (466)
Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~vd~~~~Ts-~p~IyA~ 311 (466)
T Consensus 197 ~~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~vya~ 273 (415)
T COG0446 197 LGTKVVGVEGKGNTLVVER-VVGIDGEEIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAA 273 (415)
T ss_pred CCCEEEEEEECCCCEEEEE-EEEEEEEEECCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCEEEECCCCEECCCCEEEE
T ss_conf 2652699992586215544-566530352233698789757761015--4654440137872999824542166888980
Q ss_pred CCCCCCC----------CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCE--EEHHHHHHHHHCHHHHHHCCCCEEEEEE
Q ss_conf 2433354----------344300012320120111222222233332210--0014455100147888623466589999
Q gi|254781053|r 312 GDVVRGP----------MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVV--YTHPEVASIGKTEEQLKCEKKSYKVGKF 379 (466)
Q Consensus 312 GDv~g~~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~v--ft~peia~vGlte~~a~~~~~~~~v~~~ 379 (466)
T Consensus 274 GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~ 348 (415)
T COG0446 274 GDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVV 348 (415)
T ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC-CCCCCCEEEECCCEEEEEEEECCC--CEEEEE-EEEEE
T ss_conf 3320024432220123101244554300245540344-333-323451144047614677750355--223345-55664
Q ss_pred EECCCCHHHHCC-CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 604470344188-98338999997899869999998299889999999999878987899637843
Q gi|254781053|r 380 PFSANGRARSMN-SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHA 444 (466)
Q Consensus 380 ~~~~~~ra~~~~-~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~ 444 (466)
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (415)
T COG0446 349 SGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALDAI 412 (415)
T ss_pred CCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHHHHHCCCCHHHHHCCCC
T ss_conf 14565311126776433303541155210022101-36-888864455541010120021201002