HHsearch alignment for GI: 254781053 and conserved domain: COG1251
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion].
Probab=99.97 E-value=1.4e-31 Score=248.34 Aligned_cols=372 Identities=20% Similarity=0.291 Sum_probs=240.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf 31999989866899999999879---939999379971502513667370989999999999998667558164775328
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466)
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-----nY---------------~Ri-~Ls~-----vl~~~~~ 57 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-----NY---------------NRI-LLSS-----VLAGEKT 57 (793)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CC---------------CCE-EECC-----CCCCCCC
T ss_conf 04899924640267999998308655048995267776-----64---------------410-0000-----0289866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999999877777876400431011001-110022210235752112322100004676652444576653210
Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE 158 (466)
Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~ 158 (466)
T Consensus 58 ~edi-----------~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~-g~~~~YDkLilATGS~pfi~PiPG~d~~~ 125 (793)
T COG1251 58 AEDI-----------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-GRTVSYDKLIIATGSYPFILPIPGSDLPG 125 (793)
T ss_pred HHHH-----------HCCCHHHHHHCCCEEECCCEEEEECCCCCEEECCC-CCEEECCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 8887-----------60322058775918971880478516765688468-85840432787057655656789987787
Q ss_pred EEE-EEECCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 024-530574111---1113332101234454332013220122011100001112-21222211222222222222232
Q gi|254781053|r 159 QVI-VSSTGALSF---SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-NGMDKEIAAHCLKIMSKQGMNFQ 233 (466)
Q Consensus 159 ~~~-~t~~~~~~l---~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-~~~d~~~~~~~~~~l~~~gV~i~ 233 (466)
T Consensus 126 v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~ 205 (793)
T COG1251 126 VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVL 205 (793)
T ss_pred EEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 12783199999999998606885897551141678878874797348987336688976526889999999886060453
Q ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECC
Q ss_conf 20023442014687216999721332110000023204531210367840000126764223337763330268487024
Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGD 313 (466)
Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GD 313 (466)
T Consensus 206 l~~~t~ei~g~~~~~--~vr~~DG~--~i~ad~VV~a~GIrPn~el--a~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGE 277 (793)
T COG1251 206 LEKNTEEIVGEDKVE--GVRFADGT--EIPADLVVMAVGIRPNDEL--AKEAGLAVNR-G-IVVNDYMQTSDPDIYAVGE 277 (793)
T ss_pred CCCHHHHHHCCCCEE--EEEECCCC--CCCCEEEEEECCCCCCCHH--HHHCCCCCCC-C-EEECCCCCCCCCCEEEHHH
T ss_conf 132024564576403--67605687--3442069996230466176--7861766589-8-0563655556777665176
Q ss_pred CCCC----CCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCE-EEEEEEECCCCHH
Q ss_conf 3335----434430001232012011122222-223333221000144551001478886234665-8999960447034
Q gi|254781053|r 314 VVRG----PMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSY-KVGKFPFSANGRA 387 (466)
Q Consensus 314 v~g~----~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~~~~~~-~v~~~~~~~~~ra 387 (466)
T Consensus 278 cae~~g~~yGLVaP~yeqa~v~a~hl~~~~~~~y~-gsv~---stk------------LKv~Gvdl~S~GD~~e~~~~~~ 341 (793)
T COG1251 278 CAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYE-GSVT---STK------------LKVSGVDVFSAGDFQETEGAES 341 (793)
T ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCC-CCCC---HHH------------HCCCCCCEEECCCHHHCCCCCE
T ss_conf 89761844001268999999999875067444554-5542---454------------3155663330111322489944
Q ss_pred HH-CCCCCE-EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 41-889833-899999789986999999829988999999999987898789963
Q gi|254781053|r 388 RS-MNSIDG-FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLAR 440 (466)
Q Consensus 388 ~~-~~~~~g-~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~ 440 (466)
T Consensus 342 iv~~D~~~~iYKrlvL-~d-d~IvgavL~GDt~d-~-~~l~~li~~~~~~se~r~ 392 (793)
T COG1251 342 IVFRDEQRGIYKKLVL-KD-DKIVGAVLYGDTSD-G-GWLLDLILKGADISEIRD 392 (793)
T ss_pred EEEECCCCCCEEEEEE-EC-CEEEEEEEEEECCC-C-HHHHHHHHCCCCCCCCCH
T ss_conf 8986541130048998-68-90999999742365-2-479999862788643552