HHsearch alignment for GI: 254781053 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.93 E-value=4.7e-26 Score=208.18 Aligned_cols=289 Identities=25% Similarity=0.337 Sum_probs=182.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466)
T Consensus 212 yDVLvVGgGPAgaaAAIYaARKGiRTGl~a--erfGGQvldT~~-------------------IENf-I--sv~~teGpk 267 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG-------------------IENF-I--SVPETEGPK 267 (520)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCHHHHHH--HHHCCEECCCCC-------------------HHHE-E--CCCCCCCHH
T ss_conf 349998688631678999986121110015--651882000003-------------------3330-0--565454668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCC-CE
Q ss_conf 999999999987777787640043101100111002221023575211232210000467665244--457665321-00
Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFD-EQ 159 (466)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~-~~ 159 (466)
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra--~~l~~-a~--~~~~l~ev~l~nGa-vLkaktvIlstGArWRn~nvPGE~e~rnKGV 341 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRA--SKLEP-AA--VEGGLIEVELANGA-VLKARTVILATGARWRNMNVPGEDEYRNKGV 341 (520)
T ss_pred HHHHHHHHHHHCCCHHHHHHHH--HCCEE-CC--CCCCCEEEEECCCC-EECCCEEEEECCCCHHCCCCCCHHHHHHCCE
T ss_conf 9999999876468245533434--20201-57--88860799954783-5113169984276420089985688731782
Q ss_pred EEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHH
Q ss_conf 245-30574111111333210123445433201322012201110000111221222211222222222-2222322002
Q gi|254781053|r 160 VIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQLNSK 237 (466)
Q Consensus 160 ~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~~~~ 237 (466)
T Consensus 342 ayCPHCDGPL-F--~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ii~na~ 412 (520)
T COG3634 342 AYCPHCDGPL-F--KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTIITNAQ 412 (520)
T ss_pred EECCCCCCCC-C--CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH------HHHHHHHHHHCCCCCEEEECCE
T ss_conf 6688899865-1--79647998888612888876775555131121060321------5789999973279848982231
Q ss_pred HHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCC
Q ss_conf 34420146872-1699972-133211000002320453121036784000012676422333776333026848702433
Q gi|254781053|r 238 VSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV 315 (466)
Q Consensus 238 v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~ 315 (466)
T Consensus 413 Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-Vel~~rGEIivD~~g~T~vpGvFAAGD~T 489 (520)
T COG3634 413 TTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVFAAGDCT 489 (520)
T ss_pred EEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHH--HHCH-HHCCCCCCEEEECCCCCCCCCEEECCCCC
T ss_conf 46876477501132778536785467874015899703468167--6151-11176764788557876787235337535
Q ss_pred CCCC-CCCEECCCCCCEEE
Q ss_conf 3543-44300012320120
Q gi|254781053|r 316 RGPM-LAHKAEDEGIAVAE 333 (466)
Q Consensus 316 g~~~-l~~~A~~~g~~aa~ 333 (466)
T Consensus 490 ~~~yKQIIIamG~GA~AaL 508 (520)
T COG3634 490 TVPYKQIIIAMGEGAKASL 508 (520)
T ss_pred CCCCCEEEEEECCCCHHHH
T ss_conf 7741048998267513333