HHsearch alignment for GI: 254781053 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=98.85 E-value=4.1e-08 Score=77.54 Aligned_cols=135 Identities=26% Similarity=0.462 Sum_probs=69.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCH-----H-HHHHHHHHHH-HHHHHHHHCCEE
Q ss_conf 93319999898668999999998799399993799-71502513667370-----9-8999999999-999866755816
Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPS-----K-ALLHASEMYS-HIAKEAGDLGIN 72 (466)
Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPs-----K-~l~~~a~~~~-~~~~~~~~~g~~ 72 (466)
T Consensus 5 ~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig-~---msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq 80 (621)
T PRK05192 5 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG-Q---MSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQ 80 (621)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE-E---EECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 879889989757999999999967996799965813115-8---604520367216576668775368999999887616
Q ss_pred C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf 4------77532899999999999998777778764-0043101100111-0-0222102-3575211232210000467
Q gi|254781053|r 73 I------ASCHLDLKKMMSYKKSIVESNTQGINFLL-KKNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIAT 142 (466)
Q Consensus 73 ~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviAT 142 (466)
T Consensus 81 ~r~LN~sKGpAv~~~RaQ~Dr~~Y----~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g-~~i~a~~vvltt 155 (621)
T PRK05192 81 FRMLNTSKGPAVRAPRAQADRKLY----RAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDG-LEFRAKAVVLTT 155 (621)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCC-EEEEEEEEEEEC
T ss_conf 876158888300673988859999----999999996499978998145799987999999996687-099852699831
Q ss_pred CC
Q ss_conf 66
Q gi|254781053|r 143 GS 144 (466)
Q Consensus 143 Gs 144 (466)
T Consensus 156 GT 157 (621)
T PRK05192 156 GT 157 (621)
T ss_pred CC
T ss_conf 56