HHsearch alignment for GI: 254781053 and conserved domain: PRK12770
>PRK12770 putative glutamate synthase subunit beta; Provisional.
Probab=100.00 E-value=7.3e-42 Score=323.24 Aligned_cols=291 Identities=24% Similarity=0.279 Sum_probs=185.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC-CCCHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775-32899
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASC-HLDLK 81 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~-~~d~~ 81 (466)
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~-~GG~~~~gi-p~~~~p~--~~~~~~~~~l~~~g~~~~~~~~v~-- 91 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPE-PGGLMVFGI-PEFRIPI--ERVREGVRELEELGVVFHTRTKVY-- 91 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEEEEE-CCCCCCH--HHHHHHHHHHHHHCCEEECCEEEE--
T ss_conf 9899999558899999999978998599953696-982899834-7976668--899999999997097697320998--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCC--CCCCCCCCC
Q ss_conf 999999999998777778764004310110011100222102357521123221000046766-52444--576653210
Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASGL--PGMSIDFDE 158 (466)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~i--P~~~~~~~~ 158 (466)
T Consensus 92 ---------------------~~--~~~~~~~----~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~l~ipG~~~~--- 141 (350)
T PRK12770 92 ---------------------CD--EPPHEEE----GDEFVEDFVSLEELVEEYDAVLIATGTWKSRKLGIPGENLP--- 141 (350)
T ss_pred ---------------------EE--CCEEEEE----CCEEEEEEEEHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC---
T ss_conf ---------------------50--2011330----32035776018987741899999658997735898874567---
Q ss_pred EEEEEECC-----------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 02453057-----------411111----133321012344543320132201220-11100001112212222112222
Q gi|254781053|r 159 QVIVSSTG-----------ALSFSS----VPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCL 222 (466)
Q Consensus 159 ~~~~t~~~-----------~~~l~~----~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~ 222 (466)
T Consensus 142 -gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~~----~~~~~~~~ 216 (350)
T PRK12770 142 -GVYSALEYLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTINE----APAGKYEI 216 (350)
T ss_pred -CEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHC----CCCCHHHH
T ss_conf -8086478787765343533553446655898899989864567999999975996899996665002----86189999
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEE----------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEE
Q ss_conf 22222222232200234420146872169997----------------21332110000023204531210367840000
Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRS----------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIG 286 (466)
Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~----------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g 286 (466)
T Consensus 217 ~~l~~~gv~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~--~~~~g 294 (350)
T PRK12770 217 ERLIERGVEFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPF--KKELG 294 (350)
T ss_pred HHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCH--HHHCC
T ss_conf 9999769889974522999827967899999988605666774553121374103105789999777788413--54159
Q ss_pred CCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf 12676422333776333026848702433354344300012320120111
Q gi|254781053|r 287 INIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 287 i~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 295 v~ld~~G~I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~ 344 (350)
T PRK12770 295 IELNRDGEIKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIH 344 (350)
T ss_pred EEECCCCEEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 12889981986989744899999801687888899999999999999999