HHsearch alignment for GI: 254781053 and conserved domain: PRK12770
>PRK12770 putative glutamate synthase subunit beta; Provisional.
Probab=97.73 E-value=4.1e-06 Score=63.01 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC----CC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 3321012344543320132201220111000011122----12-----22211222222222222232200234420146
Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN----GM-----DKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466)
Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~----~~-----d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466)
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~~ 97 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPPH 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCEE
T ss_conf 98999995588999999999789985999536969828998347976668899999999997097697320998502011
Q ss_pred --CCCEEEEEEECCCCCCCEEEEEEECCCC-EEEE
Q ss_conf --8721699972133211000002320453-1210
Q gi|254781053|r 246 --GKAQVVYRSTDDEPINIEADAVLVAAGR-RPYT 277 (466)
Q Consensus 246 --~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn~ 277 (466)
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~ 132 (350)
T PRK12770 98 EEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRK 132 (350)
T ss_pred EEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCC
T ss_conf 33032035776018987741899999658997735