HHsearch alignment for GI: 254781053 and conserved domain: PRK12778
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional.
Probab=99.97 E-value=3.6e-31 Score=245.43 Aligned_cols=274 Identities=26% Similarity=0.324 Sum_probs=187.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466)
T Consensus 441 KVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~--L~yGIP~--------------------------fRLP--k- 489 (760)
T PRK12778 441 KVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGV--LKYGIPE--------------------------FRLP--N- 489 (760)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC--H-
T ss_conf 8999897789999999999779906998058888975--7654861--------------------------1087--8-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC---CCEEECCCCCCC-CCC--CCCCCCCCC
Q ss_conf 99999999987777787640043101100111002221023575211232---210000467665-244--457665321
Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI---EAKNIVIATGSE-ASG--LPGMSIDFD 157 (466)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i---~ad~iviATGs~-p~~--iP~~~~~~~ 157 (466)
T Consensus 490 -----~iv~~eI----~~l~~lGV~~~~n~~-v-G-kdit~------~eL~~egyDAVfla~Ga~~pr~l~IpGe~l--- 548 (760)
T PRK12778 490 -----KIVDVEI----ENLVKMGVTFEKDCI-V-G-KTISV------EELEEEGFKGIFVASGAGLPNFMNIPGENS--- 548 (760)
T ss_pred -----HHHHHHH----HHHHHCCCEEECCCE-E-C-CCCCH------HHHHHCCCCEEEEECCCCCCCCCCCCCCCC---
T ss_conf -----9999999----999864979989957-7-8-86899------999758899999940678775289998667---
Q ss_pred CEEEEEECCCCC---C-------C----CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 002453057411---1-------1----1133321012344543320132201220-111000011-1221222211222
Q gi|254781053|r 158 EQVIVSSTGALS---F-------S----SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHC 221 (466)
Q Consensus 158 ~~~~~t~~~~~~---l-------~----~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~ 221 (466)
T Consensus 549 -~gV~~a~eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~----~Ei 623 (760)
T PRK12778 549 -INIMSSNEYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARL----EEV 623 (760)
T ss_pred -CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCH----HHH
T ss_conf -785877999999764430266678742269889999997609999999998399869997037721199998----999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCE--EE---EEE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf 2222222222322002344201468721--69---997-------------21332110000023204531210367840
Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQ--VV---YRS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466)
Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~--v~---~~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466)
T Consensus 624 -~~A~eEGV~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~-~~ 701 (760)
T PRK12778 624 -KHAKEEGIEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVP-SS 701 (760)
T ss_pred -HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CC
T ss_conf -9998579889916897899977996699999999997553777888735659946999999999998689886521-13
Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf 00012676422333776333026848702433354344300012320120111
Q gi|254781053|r 284 EIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 284 ~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 702 ~~gl~~~~~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id 754 (760)
T PRK12778 702 IPGLELGRKGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMN 754 (760)
T ss_pred CCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66725779997883989634898999867867680599999999999999999