HHsearch alignment for GI: 254781053 and conserved domain: PRK12779
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional.
Probab=99.95 E-value=6.5e-28 Score=221.70 Aligned_cols=278 Identities=24% Similarity=0.308 Sum_probs=186.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466)
T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~-YG-IPe--------------------------FRLP-K~I 358 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLR-YG-IPE--------------------------FRLP-NQL 358 (944)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-EC-CCC--------------------------CCCC-HHH
T ss_conf 679988576899999999977993399944787885589-55-876--------------------------6687-899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466)
T Consensus 359 -------V~~EI----~~l~~lGV~f~~n~~--V-Gk~~tl~eL---~~eGydAVfIg~GAg~p~~l~IpGE~L----~G 417 (944)
T PRK12779 359 -------IDDVV----EKIKLLGGRFVKNFV--V-GKTATLEDL---KAEGFWKIFVGTGAGLPTFMNVPGEHL----LG 417 (944)
T ss_pred -------HHHHH----HHHHHCCEEEEECCE--E-CCCCCHHHH---HHCCCCEEEEEECCCCCCCCCCCCCCC----CC
T ss_conf -------99999----999967839997856--4-776889999---768999899974788875689888777----68
Q ss_pred EEEECCCCC---C-------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCC
Q ss_conf 453057411---1-------------11133321012344543320132201220111000011-122122221122222
Q gi|254781053|r 161 IVSSTGALS---F-------------SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDKEIAAHCLK 223 (466)
Q Consensus 161 ~~t~~~~~~---l-------------~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~~~~~~~~~ 223 (466)
T Consensus 418 V~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EE----i-~ 492 (944)
T PRK12779 418 VMSANEFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----L-H 492 (944)
T ss_pred EEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHH----H-H
T ss_conf 2568999998643123566456864267898799989956699999998852987899984587658988999----9-8
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEE---EE---EEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEE-
Q ss_conf 222222223220023442014687216---99---972------------13321100000232045312103678400-
Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQV---VY---RST------------DDEPINIEADAVLVAAGRRPYTKGLGLEE- 284 (466)
Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v---~~---~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~- 284 (466)
T Consensus 493 hA~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpl-i-~~t~ 570 (944)
T PRK12779 493 HALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-M-KDAE 570 (944)
T ss_pred HHHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC-C-CCCC
T ss_conf 8985792899814966552446897788999998535898877897887779716977799999057899951-0-1368
Q ss_pred EECCCCCCCCCCCCC-CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC
Q ss_conf 001267642233377-633302684870243335434430001232012011122
Q gi|254781053|r 285 IGINIDHRGCIEIGG-QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ 338 (466)
Q Consensus 285 ~gi~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~ 338 (466)
T Consensus 571 p~L~~~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~ 625 (944)
T PRK12779 571 PGLKTNKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGE 625 (944)
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7730167851998855576677777633550245678988755459999998546