HHsearch alignment for GI: 254781053 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=99.97 E-value=4.8e-32 Score=251.77 Aligned_cols=273 Identities=24% Similarity=0.358 Sum_probs=190.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466)
Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466)
T Consensus 196 VAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm--lryGIP~--------------------------yRLP-k~v- 245 (652)
T PRK12814 196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM--MRYGIPR--------------------------FRLP-ESV- 245 (652)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH-
T ss_conf 999683789999999999779906998158888986--7644863--------------------------3389-999-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCCCCEEE
Q ss_conf 9999999987777787640043101100111002221023575211232210000467665-244--4576653210024
Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASG--LPGMSIDFDEQVI 161 (466)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~--iP~~~~~~~~~~~ 161 (466)
T Consensus 246 ------ld~E---I~-~i~~~GV~~~~n~~-vG~d--itl~----~L~~~yDAVflaiGa~~~r~L~ipGedl----~gV 304 (652)
T PRK12814 246 ------IDAD---IA-PLRAMGAEFRFNTV-FGRD--ITLE----ELQKEFDAVLLAVGAQKASKMGIPGEEL----PGV 304 (652)
T ss_pred ------HHHH---HH-HHHHCCCEEEEEEE-ECCC--CCHH----HHHHHCCEEEEEECCCCCCCCCCCCCCC----CCE
T ss_conf ------9999---99-99971985886679-4774--7799----9986589999975578774479888878----772
Q ss_pred EEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53057411------111133321012344543320132201220-111000011-1221222211222222222222232
Q gi|254781053|r 162 VSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNFQ 233 (466)
Q Consensus 162 ~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i~ 233 (466)
T Consensus 305 ~~avdfL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei----~e-A~eEGV~~~ 379 (652)
T PRK12814 305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EE-ALAEGVSLR 379 (652)
T ss_pred EEHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHH----HH-HHHCCCCEE
T ss_conf 7689999985269866678852486688138999999987489758998337633199986777----78-886798469
Q ss_pred CCHHHHHHHCCCCCCEEEEE-E---------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 20023442014687216999-7---------------2133211000002320453121036784000012676422333
Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYR-S---------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI 297 (466)
Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~-~---------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~v 297 (466)
T Consensus 380 ~l~~P~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~--~~~~~gl~~~~~G~i~v 457 (652)
T PRK12814 380 ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP--IAEAAGIGTSRNGTVKV 457 (652)
T ss_pred ECCCCEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCC--HHHCCCCCCCCCCCEEE
T ss_conf 7615589998689689999999996887889772456599669961788998458788833--22245863668998885
Q ss_pred C-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf 7-7633302684870243335434430001232012011
Q gi|254781053|r 298 G-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466)
Q Consensus 298 d-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466)
T Consensus 458 d~~t~~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~I 496 (652)
T PRK12814 458 DPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496 (652)
T ss_pred CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 888874399999989888768449999999999999999