HHsearch alignment for GI: 254781053 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.99 E-value=3.5e-07 Score=70.80 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 333210123445433201322012201110000111221---------22221122222222222223220023442014
Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466)
Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466)
T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~d--- 269 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD--- 269 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC---
T ss_conf 99799968378999999999977990699815888898676448633389999999999999719858866794774---
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf 687216999721332110000023204531
Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466)
Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466)
T Consensus 270 -----itl-----~~L~~~yDAVflaiGa~ 289 (652)
T PRK12814 270 -----ITL-----EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred -----CCH-----HHHHHHCCEEEEEECCC
T ss_conf -----779-----99986589999975578