HHsearch alignment for GI: 254781053 and conserved domain: PRK12814

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.99  E-value=3.5e-07  Score=70.80  Aligned_cols=88  Identities=25%  Similarity=0.349  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             333210123445433201322012201110000111221---------22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
T Consensus       193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~d---  269 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD---  269 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC---
T ss_conf             99799968378999999999977990699815888898676448633389999999999999719858866794774---


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             687216999721332110000023204531
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
T Consensus       270 -----itl-----~~L~~~yDAVflaiGa~  289 (652)
T PRK12814        270 -----ITL-----EELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             -----CCH-----HHHHHHCCEEEEEECCC
T ss_conf             -----779-----99986589999975578