HHsearch alignment for GI: 254781053 and conserved domain: PTZ00318
>PTZ00318 NADH dehydrogenase; Provisional.
Probab=99.96 E-value=5e-31 Score=244.37 Aligned_cols=304 Identities=18% Similarity=0.274 Sum_probs=189.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466)
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~--------------------lF~PLL~qvA-------tGtLe~r~ 63 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHM--------------------VFTPLLPQTT-------TGTLEFRS 63 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCC--------------------CCCHHHHHHH-------HCCCCHHH
T ss_conf 85899997699999999738689828999999985--------------------0102167662-------05777577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCC---CCC-------CCCCCCCEEECCCCCCCCCC--
Q ss_conf 999999999987777787640043101100111002--2210235---752-------11232210000467665244--
Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVK---GSS-------SEETIEAKNIVIATGSEASG-- 148 (466)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~---~~~-------~~~~i~ad~iviATGs~p~~-- 148 (466)
T Consensus 64 I~~Pir~i~--------~~~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FG 135 (514)
T PTZ00318 64 VCEPITRIQ--------PALAKLPNRFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFN 135 (514)
T ss_pred EECCHHHHH--------HHHCCCCCEEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCC
T ss_conf 222178876--------765136745999999887121078999740124665444456636428878986786556789
Q ss_pred CCCCCCCCCCEEEEEECCCCCCC----------CCC-------C---CCCCCCCCCCCCCCCHHHHHCC-----------
Q ss_conf 45766532100245305741111----------113-------3---3210123445433201322012-----------
Q gi|254781053|r 149 LPGMSIDFDEQVIVSSTGALSFS----------SVP-------K---NLLVIGAGVIGLELGSVWTRLG----------- 197 (466)
Q Consensus 149 iP~~~~~~~~~~~~t~~~~~~l~----------~~P-------~---~ivIIGgG~ig~E~A~~~~~lG----------- 197 (466)
T Consensus 136 ipGv~E--~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l 213 (514)
T PTZ00318 136 VPGVEE--RAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSL 213 (514)
T ss_pred CCCHHH--HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 998798--466578899999999999999998507889978932420278977776203289999999998876428123
Q ss_pred ---CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf ---20111000011122122221122222222222223220023442014687216999721332110000023204531
Q gi|254781053|r 198 ---SCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466)
Q Consensus 198 ---~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466)
T Consensus 214 ~~~~~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~--~~~--v~~--~~G--e~i~~~tvVWtAGV~ 283 (514)
T PTZ00318 214 VPFCKVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVT--DKE--VFT--KSG--EVLPTGLVVWSTGVG 283 (514)
T ss_pred CCCCEEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEE--CCE--EEE--CCC--CEEECCEEEEECCCC
T ss_conf 010037886050-01210898999999999987894998362-89986--895--896--798--199866899915887
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCEE-----ECCCCEEECCCCC-----CCCCCCEECCCCCCEEECCCC----CC-
Q ss_conf 21036784000012676422333776333-----0268487024333-----543443000123201201112----22-
Q gi|254781053|r 275 PYTKGLGLEEIGINIDHRGCIEIGGQFQT-----SISTIYAIGDVVR-----GPMLAHKAEDEGIAVAEIISG----QK- 339 (466)
Q Consensus 275 Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g-----~~~l~~~A~~~g~~aa~~i~~----~~- 339 (466)
T Consensus 284 a~pl---~~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~~ 360 (514)
T PTZ00318 284 PSPL---TKALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKPM 360 (514)
T ss_pred CCCH---HHHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6703---6656886457983788998676788899997688423346789989993078999999999999998639998
Q ss_pred -CCCCCCCCCCCEEEHHHHHHHHHC
Q ss_conf -222233332210001445510014
Q gi|254781053|r 340 -GHVNYGIIPSVVYTHPEVASIGKT 363 (466)
Q Consensus 340 -~~~~~~~ip~~vft~peia~vGlt 363 (466)
T Consensus 361 ~~pF~Y~~~G-------smA~IG~~ 378 (514)
T PTZ00318 361 MAPFVYRSLG-------SMVSLGDN 378 (514)
T ss_pred CCCCEECCCC-------EEEEECCC
T ss_conf 9996134666-------47884684