HHsearch alignment for GI: 254781053 and conserved domain: TIGR01316
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=99.98 E-value=6.2e-33 Score=258.26 Aligned_cols=279 Identities=28% Similarity=0.410 Sum_probs=201.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466)
T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~-------------------------YGI--PefRLp-Ke 193 (462)
T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LA-------------------------YGI--PEFRLP-KE 193 (462)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE-------------------------ECC--CCCCCC-HH
T ss_conf 77999846821468899997479869999714899856-75-------------------------368--885487-57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCC--CCCCCCCCCCCE
Q ss_conf 99999999998777778764004310110011100222102357521123221000046766-524--445766532100
Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EAS--GLPGMSIDFDEQ 159 (466)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~--~iP~~~~~~~~~ 159 (466)
T Consensus 194 i~~~---E~--------k~LkklGv~fr~~~--lv-Gkt~TL~--eL~~~YGfDAVFIgtGAG~pkl~NipG~~L----~ 253 (462)
T TIGR01316 194 IVET---EV--------KKLKKLGVKFRTDY--LV-GKTVTLE--ELLEKYGFDAVFIGTGAGLPKLLNIPGEEL----K 253 (462)
T ss_pred HHHH---HH--------HHHHHCCEEEEECC--EE-CCCHHHH--HHHHHCCCCEEEEEECCCCCEECCCCCHHH----C
T ss_conf 8898---88--------87632663799443--75-0511288--888751970799950689870016784343----4
Q ss_pred EEEEECCCCC---------C--CCCC----CCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2453057411---------1--1113----3321012344543320132201220-111000011122122221122222
Q gi|254781053|r 160 VIVSSTGALS---------F--SSVP----KNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCLK 223 (466)
Q Consensus 160 ~~~t~~~~~~---------l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~~ 223 (466)
T Consensus 254 gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtRe----dmtAr~EEi~ 329 (462)
T TIGR01316 254 GVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTRE----DMTAREEEIK 329 (462)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC----CCHHHHHHHH
T ss_conf 002234688777776542366788756544768998785367877766645284236998854777----5136699999
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE--C----------------CCCCCCEEEEEEECCCCEEEECCCCCEEE
Q ss_conf 22222222322002344201468721699972--1----------------33211000002320453121036784000
Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST--D----------------DEPINIEADAVLVAAGRRPYTKGLGLEEI 285 (466)
Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~--~----------------g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~ 285 (466)
T Consensus 330 ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Np--i~~e~~ 407 (462)
T TIGR01316 330 HAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANP--IIAEDS 407 (462)
T ss_pred HHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCC--EEEECC
T ss_conf 885389289987421689865765189999885376881145781243049951788626599974589883--033067
Q ss_pred -ECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf -012676422333776333026848702433354344300012320120111
Q gi|254781053|r 286 -GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 286 -gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 408 r~lkt~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~ 459 (462)
T TIGR01316 408 RSLKTSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID 459 (462)
T ss_pred CEEEECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf 3333458865787476304767574267277458669985003568999874