HHsearch alignment for GI: 254781053 and conserved domain: TIGR01317

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.97  E-value=5e-30  Score=237.10  Aligned_cols=289  Identities=25%  Similarity=0.300  Sum_probs=182.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
T Consensus       153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGL------------L--------------~YGI--PnmKLdK~e~  204 (517)
T TIGR01317       153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGL------------L--------------RYGI--PNMKLDKEEI  204 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC------------C--------------CCCC--CCCCCCHHHH
T ss_conf             6899756757999999985358838997436788863------------0--------------2488--8743373889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEE--E------EECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCC
Q ss_conf             999999999877777876400431011001--1------1002221023575211232210000467665-244457665
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGS--A------RIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSI  154 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~--a------~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~  154 (466)
T Consensus       205 v~RRi-----------~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~--~~L~~~fDAVVLa~Ga~~pRDLpI~GR  271 (517)
T TIGR01317       205 VDRRI-----------DLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA--DELKEDFDAVVLATGATKPRDLPIPGR  271 (517)
T ss_pred             HHHHH-----------HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH--HHHHHHCCEEEEECCCCCCCCCCCCCC
T ss_conf             99999-----------99874784201783004653444200022342687--998714693898337886010355776


Q ss_pred             CCCCEEE----EEE-------CCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCC------
Q ss_conf             3210024----530-------5741111------1133321012344543320132201220-11100001112------
Q gi|254781053|r  155 DFDEQVI----VSS-------TGALSFS------SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTIL------  210 (466)
Q Consensus       155 ~~~~~~~----~t~-------~~~~~l~------~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll------  210 (466)
T Consensus       272 EL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~  351 (517)
T TIGR01317       272 ELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKD  351 (517)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf             64660378655467548560885366678873542286789975787562245632355435523025688877677278


Q ss_pred             ---CCCCCCCC-CCCCCCCCC-CC--CCCCCCHHHHHHHCCC-CCCE----------------EEEEEECCCCCCCEEEE
Q ss_conf             ---21222211-222222222-22--2232200234420146-8721----------------69997213321100000
Q gi|254781053|r  211 ---NGMDKEIA-AHCLKIMSK-QG--MNFQLNSKVSSVKKVK-GKAQ----------------VVYRSTDDEPINIEADA  266 (466)
Q Consensus       211 ---~~~d~~~~-~~~~~~l~~-~g--V~i~~~~~v~~i~~~~-~~~~----------------v~~~~~~g~~~~i~~D~  266 (466)
T Consensus       352 npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdL  430 (517)
T TIGR01317       352 NPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADL  430 (517)
T ss_pred             CCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHE
T ss_conf             648657511330266898985179560123-1001335676884487888899999877898288886079752011012


Q ss_pred             EEECCCCEE-EECCCCCEEEECCCCCCCCCC-CCCCCE---EECCC--CEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             232045312-103678400001267642233-377633---30268--4870243335434430001232012011
Q gi|254781053|r  267 VLVAAGRRP-YTKGLGLEEIGINIDHRGCIE-IGGQFQ---TSIST--IYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       267 vl~a~G~~P-n~~~l~Le~~gi~~~~~G~I~-vd~~~~---Ts~p~--IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
T Consensus       431 VLLAmGFvGPE~~G-lL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EGR~aA~aV  505 (517)
T TIGR01317       431 VLLAMGFVGPEQAG-LLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEGRKAARAV  505 (517)
T ss_pred             EEEECCCCCCCCCC-CHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             33202675764200-3144444437787466323677765887189726876248988037788888878999986