HHsearch alignment for GI: 254781053 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.94 E-value=2.9e-27 Score=217.00 Aligned_cols=279 Identities=25% Similarity=0.352 Sum_probs=192.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466)
Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466)
T Consensus 146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGL--L------------------------tFGIP--sFKLd-K~V~ 196 (480)
T TIGR01318 146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL--L------------------------TFGIP--SFKLD-KAVL 196 (480)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--C------------------------CCCCC--CHHHH-HHHH
T ss_conf 899778860257999875178559997477030760--1------------------------36888--51102-7899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCCC---
Q ss_conf 99999999877777876400431011001110022210235752112322100004676652---444576653210---
Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA---SGLPGMSIDFDE--- 158 (466)
Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p---~~iP~~~~~~~~--- 158 (466)
T Consensus 197 ~~Rr-----------~if~~MGi~F~Ln~-Ev-G-rD~~l~----~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~AL 258 (480)
T TIGR01318 197 SRRR-----------EIFTAMGIEFKLNT-EV-G-RDISLD----DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKAL 258 (480)
T ss_pred HHHH-----------HHHHHCCCEEECCC-EE-E-CCCCHH----HHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 9999-----------99975892786581-65-0-325554----44311484896114334312877887742166642
Q ss_pred EEEE-EECCCCCCCC-----------C------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCC
Q ss_conf 0245-3057411111-----------1------3332101234454332013220122-01110000111-221222211
Q gi|254781053|r 159 QVIV-SSTGALSFSS-----------V------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIA 218 (466)
Q Consensus 159 ~~~~-t~~~~~~l~~-----------~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~ 218 (466)
T Consensus 259 PFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrr--- 335 (480)
T TIGR01318 259 PFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRR--- 335 (480)
T ss_pred HHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH---
T ss_conf 47766152123788877744677766774234776689858887525788999981776131266536778787755---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE------------------CCCCCCCEEEEEEECCCCEEEECCC
Q ss_conf 2222222222222322002344201468721699972------------------1332110000023204531210367
Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST------------------DDEPINIEADAVLVAAGRRPYTKGL 280 (466)
Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~------------------~g~~~~i~~D~vl~a~G~~Pn~~~l 280 (466)
T Consensus 336 -EV~N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p- 412 (480)
T TIGR01318 336 -EVAN-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP- 412 (480)
T ss_pred -HHCC-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC-
T ss_conf -5266-1111711321003158887788852335652356678677768777104786515146558971067898864-
Q ss_pred CCEEEECCCCCCCCCCCC-------CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf 840000126764223337-------76333026848702433354344300012320120111
Q gi|254781053|r 281 GLEEIGINIDHRGCIEIG-------GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 281 ~Le~~gi~~~~~G~I~vd-------~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 413 WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~ 475 (480)
T TIGR01318 413 WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGIL 475 (480)
T ss_pred HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf 445177556346327751345567765335688475167701467220006676689999999