HHsearch alignment for GI: 254781053 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.94  E-value=2.9e-27  Score=217.00  Aligned_cols=279  Identities=25%  Similarity=0.352  Sum_probs=192.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
T Consensus       146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGL--L------------------------tFGIP--sFKLd-K~V~  196 (480)
T TIGR01318       146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL--L------------------------TFGIP--SFKLD-KAVL  196 (480)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--C------------------------CCCCC--CHHHH-HHHH
T ss_conf             899778860257999875178559997477030760--1------------------------36888--51102-7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCCC---
Q ss_conf             99999999877777876400431011001110022210235752112322100004676652---444576653210---
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA---SGLPGMSIDFDE---  158 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p---~~iP~~~~~~~~---  158 (466)
T Consensus       197 ~~Rr-----------~if~~MGi~F~Ln~-Ev-G-rD~~l~----~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~AL  258 (480)
T TIGR01318       197 SRRR-----------EIFTAMGIEFKLNT-EV-G-RDISLD----DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKAL  258 (480)
T ss_pred             HHHH-----------HHHHHCCCEEECCC-EE-E-CCCCHH----HHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             9999-----------99975892786581-65-0-325554----44311484896114334312877887742166642


Q ss_pred             EEEE-EECCCCCCCC-----------C------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCC
Q ss_conf             0245-3057411111-----------1------3332101234454332013220122-01110000111-221222211
Q gi|254781053|r  159 QVIV-SSTGALSFSS-----------V------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIA  218 (466)
Q Consensus       159 ~~~~-t~~~~~~l~~-----------~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~  218 (466)
T Consensus       259 PFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrr---  335 (480)
T TIGR01318       259 PFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRR---  335 (480)
T ss_pred             HHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH---
T ss_conf             47766152123788877744677766774234776689858887525788999981776131266536778787755---


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE------------------CCCCCCCEEEEEEECCCCEEEECCC
Q ss_conf             2222222222222322002344201468721699972------------------1332110000023204531210367
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST------------------DDEPINIEADAVLVAAGRRPYTKGL  280 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~------------------~g~~~~i~~D~vl~a~G~~Pn~~~l  280 (466)
T Consensus       336 -EV~N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p-  412 (480)
T TIGR01318       336 -EVAN-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP-  412 (480)
T ss_pred             -HHCC-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC-
T ss_conf             -5266-1111711321003158887788852335652356678677768777104786515146558971067898864-


Q ss_pred             CCEEEECCCCCCCCCCCC-------CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             840000126764223337-------76333026848702433354344300012320120111
Q gi|254781053|r  281 GLEEIGINIDHRGCIEIG-------GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       281 ~Le~~gi~~~~~G~I~vd-------~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
T Consensus       413 WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~  475 (480)
T TIGR01318       413 WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGIL  475 (480)
T ss_pred             HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf             445177556346327751345567765335688475167701467220006676689999999